RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9688
(181 letters)
>2vj3_A Neurogenic locus notch homolog protein 1; transcription,
metal-binding, transmembrane, developmental protein,
notch signaling pathway; 2.60A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A
2rr2_A*
Length = 135
Score = 80.7 bits (200), Expect = 3e-20
Identities = 42/127 (33%), Positives = 60/127 (47%), Gaps = 12/127 (9%)
Query: 45 CLTDPCLGHGTCINRSDRYQCLCTPRYSGNNCEKDNGDCSSNPCLNDGVCVDEV------ 98
+PC G CIN ++C C Y+G CE D +C SNPC ND C+D++
Sbjct: 10 LGANPCEHAGKCINTLGSFECQCLQGYTGPRCEIDVNECVSNPCQNDATCLDQIGEFQCI 69
Query: 99 ----YKGRYWELPEIRDCTSNPCLNDCVCVDDGNLSFYCNCTEDFTGEYCQFENSAACVT 154
Y+G + E+ +C S+PCL++ C+D N F C C FTG CQ +
Sbjct: 70 CMPGYEGVHCEV-NTDECASSPCLHNGRCLDKIN-EFQCECPTGFTGHLCQVDLHHILDA 127
Query: 155 LNPCQNN 161
N+
Sbjct: 128 QKMVWNH 134
Score = 54.9 bits (133), Expect = 2e-10
Identities = 23/97 (23%), Positives = 41/97 (42%), Gaps = 16/97 (16%)
Query: 10 TLCESDINECETVKDVC-NYGICVNTNG-------------NGNSKVDHCLTDPCLGHGT 55
CE D+NEC + + C N C++ G + D C + PCL +G
Sbjct: 39 PRCEIDVNECVS--NPCQNDATCLDQIGEFQCICMPGYEGVHCEVNTDECASSPCLHNGR 96
Query: 56 CINRSDRYQCLCTPRYSGNNCEKDNGDCSSNPCLNDG 92
C+++ + +QC C ++G+ C+ D +
Sbjct: 97 CLDKINEFQCECPTGFTGHLCQVDLHHILDAQKMVWN 133
>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A
{Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L*
Length = 195
Score = 74.8 bits (184), Expect = 3e-17
Identities = 32/174 (18%), Positives = 48/174 (27%), Gaps = 14/174 (8%)
Query: 3 FKPISLSTLCESDINECETVKDVCNYGICVNTNGNGNSKVDHCLTDPCLGHGTCINRSDR 62
K L C + E ++V N N D C T PC G C +
Sbjct: 3 MKKGHLERECMEETCSYEEAREVFEDSDKTNEFWNKYKDGDQCETSPCQNQGKCKDGLGE 62
Query: 63 YQCLCTPRYSGNNCEKDNGD-CSSNPCLNDGVCVDEV----------YKGRYWELPEIRD 111
Y C C + G NCE CS + D C +E Y
Sbjct: 63 YTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGK-ACIP 121
Query: 112 CTSNPCLNDCVCVDDGNLSFYCNCTEDFTGEYCQFENSAACVTLNPCQNNATCV 165
PC + + + + ++ A +P +N +
Sbjct: 122 TGPYPCGKQTLERRKRS-VAQATSSSGEAPDSITWKPYDAADL-DPTENPFDLL 173
Score = 55.5 bits (134), Expect = 3e-10
Identities = 20/141 (14%), Positives = 30/141 (21%), Gaps = 25/141 (17%)
Query: 12 CESDINECETVKDVCNYGICVNTNGN--------------GNSKVDHCLTDPCLGHGTCI 57
D ++CET N G C + G C D C
Sbjct: 38 KYKDGDQCET-SPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCH 96
Query: 58 NRSDRYQCLCTPRYSGNNCEKDNGDCSSNPCLNDGVCVDEV----------YKGRYWELP 107
+ C C Y+ + K PC + +
Sbjct: 97 EEQNSVVCSCARGYTLADNGKACIPTGPYPCGKQTLERRKRSVAQATSSSGEAPDSITWK 156
Query: 108 EIRDCTSNPCLNDCVCVDDGN 128
+P N +D
Sbjct: 157 PYDAADLDPTENPFDLLDFNQ 177
Score = 47.1 bits (112), Expect = 3e-07
Identities = 20/125 (16%), Positives = 30/125 (24%), Gaps = 31/125 (24%)
Query: 45 CLTDPCLGHGTCINRSDRYQCLCTPRYSGNNCEKDNGDCSSNPCLNDGVCVDEVYKGRYW 104
L C+ + N KD C ++PC N G C D +
Sbjct: 7 HLERECMEETCSYEEAREVFEDSDKTNEFWNKYKDGDQCETSPCQNQGKCKDGLG----- 61
Query: 105 ELPEIRDCTSNPCLNDCVCVDDGNLSFYCNCTEDFTGEYCQFENSAACVTLNPCQNNATC 164
+ C C E F G+ C+ C + + C
Sbjct: 62 -------------------------EYTCTCLEGFEGKNCELFTRKLCSL-DNGDCDQFC 95
Query: 165 VASPG 169
Sbjct: 96 HEEQN 100
Score = 28.6 bits (64), Expect = 0.92
Identities = 15/67 (22%), Positives = 22/67 (32%), Gaps = 8/67 (11%)
Query: 110 RDCTSNPCLNDCVCVDDGNLSFYCNCTEDFTGEYCQFENSAACVTLNPCQNNATCVASPG 169
R+C C + + + + + C T +PCQN C G
Sbjct: 10 RECMEETCSYEEAR------EVFEDSDKTNEFWNKYKDGDQ-CET-SPCQNQGKCKDGLG 61
Query: 170 EKQITCL 176
E TCL
Sbjct: 62 EYTCTCL 68
>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD
finger, cell adhesion, innate immunity, extracellular MA
protein; HET: NGA NAG FUC; 2.60A {Homo sapiens}
Length = 143
Score = 68.6 bits (168), Expect = 2e-15
Identities = 32/150 (21%), Positives = 50/150 (33%), Gaps = 40/150 (26%)
Query: 43 DHCLTDPCLGHGTCINR--SDRYQCLCTPRYSGNNCEKD------------NGDCSSNPC 88
D C +PC G C+ + C C ++ NC G C+ NPC
Sbjct: 1 DICDPNPCENGGICLPGLADGSFSCECPDGFTDPNCSSVVEVASDEEEPTSAGPCTPNPC 60
Query: 89 LNDGVCVDEV-----------------YKGRYWELPEIRDCTSNPCLNDCVCVDDGNLSF 131
N G C + G + + I +C PC N +C D ++
Sbjct: 61 HNGGTCEISEAYRGDTFIGYVCKCPRGFNGIHCQH-NINECEVEPCKNGGICTDLVA-NY 118
Query: 132 YCNCTEDFTGEYCQFENSAACVTLNPCQNN 161
C C +F G CQ++ ++
Sbjct: 119 SCECPGEFMGRNCQYK-------GGGHHHH 141
Score = 51.3 bits (123), Expect = 6e-09
Identities = 29/113 (25%), Positives = 37/113 (32%), Gaps = 31/113 (27%)
Query: 82 DCSSNPCLNDGVCVDEVYKGRY-----------------------WELPEIRDCTSNPCL 118
C NPC N G+C+ + G + E CT NPC
Sbjct: 2 ICDPNPCENGGICLPGLADGSFSCECPDGFTDPNCSSVVEVASDEEEPTSAGPCTPNPCH 61
Query: 119 NDCVCVD------DGNLSFYCNCTEDFTGEYCQFENSAACVTLNPCQNNATCV 165
N C D + + C C F G +CQ N C PC+N C
Sbjct: 62 NGGTCEISEAYRGDTFIGYVCKCPRGFNGIHCQ-HNINECEV-EPCKNGGICT 112
Score = 37.4 bits (87), Expect = 7e-04
Identities = 17/77 (22%), Positives = 24/77 (31%), Gaps = 26/77 (33%)
Query: 10 TLCESDINECETVKDVCNYGICVNTNGNGNSKVDHCLTDPCLGHGTCINRSDRYQCLCTP 69
C+ +INECE +PC G C + Y C C
Sbjct: 91 IHCQHNINECE--------------------------VEPCKNGGICTDLVANYSCECPG 124
Query: 70 RYSGNNCEKDNGDCSSN 86
+ G NC+ G +
Sbjct: 125 EFMGRNCQYKGGGHHHH 141
>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain,
blood coagulation, polymorphism, glycoprotein,
hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB:
1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A*
1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B*
2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ...
Length = 134
Score = 65.4 bits (160), Expect = 3e-14
Identities = 32/163 (19%), Positives = 42/163 (25%), Gaps = 33/163 (20%)
Query: 3 FKPISLSTLCESDINECETVKDVCNYGICVNTNGNGNSKVDHCLTDPCLGHGTCINRSDR 62
K L C + E ++V N N D C T PC G C +
Sbjct: 3 MKKGHLERECMEETCSYEEAREVFEDSDKTNEFWNKYKDGDQCETSPCQNQGKCKDGLGE 62
Query: 63 YQCLCTPRYSGNNCEKD-NGDCSSNPCLNDGVCVDEVYKGRYWELPEIRDCTSNPCLNDC 121
Y C C + G NCE CS + D C +E
Sbjct: 63 YTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQN---------------------- 100
Query: 122 VCVDDGNLSFYCNCTEDFTGEYCQFENSAACVTLNPCQNNATC 164
S C+C +T + PC
Sbjct: 101 --------SVVCSCARGYTLADNG-KACIPTGP-YPCGKQTLE 133
Score = 54.6 bits (132), Expect = 2e-10
Identities = 21/125 (16%), Positives = 32/125 (25%), Gaps = 31/125 (24%)
Query: 45 CLTDPCLGHGTCINRSDRYQCLCTPRYSGNNCEKDNGDCSSNPCLNDGVCVDEVYKGRYW 104
L C+ + N KD C ++PC N G C D +
Sbjct: 7 HLERECMEETCSYEEAREVFEDSDKTNEFWNKYKDGDQCETSPCQNQGKCKDGLG----- 61
Query: 105 ELPEIRDCTSNPCLNDCVCVDDGNLSFYCNCTEDFTGEYCQFENSAACVTLNPCQNNATC 164
+ C C E F G+ C+ C +L+ + C
Sbjct: 62 -------------------------EYTCTCLEGFEGKNCELFTRKLC-SLDNGDCDQFC 95
Query: 165 VASPG 169
Sbjct: 96 HEEQN 100
>2c4f_L Coagulation factor VII precursor; blood coagulation, serine
protease, EGF, EGF-like domain, GLA, receptor enzyme,
glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG
GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1
g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L*
2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L*
1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L*
2flb_L* ...
Length = 142
Score = 62.7 bits (153), Expect = 3e-13
Identities = 31/162 (19%), Positives = 45/162 (27%), Gaps = 28/162 (17%)
Query: 3 FKPISLSTLCESDINECETVKDVCNYGICVNTNGNGNSKVDHCLTDPCLGHGTCINRSDR 62
+P SL C+ + E +++ S D C + PC G+C ++
Sbjct: 8 LRPGSLERECKEEQCSFEEAREIFKDAERTKLFWISYSDGDQCASSPCQNGGSCKDQLQS 67
Query: 63 YQCLCTPRYSGNNCEKDNGDCSSNPCLNDGVCVDEVYKGRYWELPEIRDCTSNPCLNDCV 122
Y C C P + G NCE D N G
Sbjct: 68 YICFCLPAFEGRNCETHKDDQLICVNENGGCEQ--------------------------Y 101
Query: 123 CVDDGNLSFYCNCTEDFTGEYCQFENSAACVTLNPCQNNATC 164
C D C C E ++ + V PC
Sbjct: 102 CSDHTGTKRSCRCHEGYSLLADG-VSCTPTVE-YPCGKIPIL 141
>1x7a_L Coagulation factor IX, light chain; inhibition, blood
clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP:
g.3.11.1 g.3.11.1 PDB: 1pfx_L*
Length = 146
Score = 60.4 bits (147), Expect = 2e-12
Identities = 24/126 (19%), Positives = 36/126 (28%), Gaps = 32/126 (25%)
Query: 42 VDHCLTDPCLGHGTCINRSDRYQCLCTPRYSGNNCEKDNGDCSSNPCLNDGVCVDEVYKG 101
D C +PCL G C + + Y+C C + G NCE D N
Sbjct: 48 GDQCEPNPCLNGGLCKDDINSYECWCQVGFEGKNCELDATCNIKNGRCKQF--------- 98
Query: 102 RYWELPEIRDCTSNPCLNDCVCVDDGNLSFYCNCTEDFTGEYCQFENSAACVTLNPCQNN 161
C + C+CT + Q ++ V PC
Sbjct: 99 ---------------------CKTGADSKVLCSCTTGYRLAPDQ-KSCKPAVP-FPCGRV 135
Query: 162 ATCVAS 167
+ +
Sbjct: 136 SVSHSP 141
Score = 41.6 bits (98), Expect = 2e-05
Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 5/70 (7%)
Query: 108 EIRDCTSNPCLNDCVCVDDGNLSFYCNCTEDFTGEYCQFENSAACVTLNPCQNNATCVAS 167
+ C NPCLN +C DD N S+ C C F G+ C+ + + C N +
Sbjct: 47 DGDQCEPNPCLNGGLCKDDIN-SYECWCQVGFEGKNCELDAT--CNIKNGRCKQFCKTGA 103
Query: 168 PGEKQITCLC 177
++ C C
Sbjct: 104 DS--KVLCSC 111
>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular,
developmental protein, notch signaling pathway, EGF,
DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB:
2kb9_A
Length = 169
Score = 55.8 bits (135), Expect = 2e-10
Identities = 29/140 (20%), Positives = 45/140 (32%), Gaps = 23/140 (16%)
Query: 45 CLTDPCLGHGTCINRSDRYQCLCTPRYSGNNCEKDNGDCSSNPCLNDGVCVDEV------ 98
D GH C C + G C + C G C
Sbjct: 35 RPRDDFFGHYAC---DQNGNKTCMEGWMGPECNRA--ICRQGCSPKHGSCKLPGDCRCQY 89
Query: 99 -YKGRYWELPEIRDCTSNPCLNDCVCVDDGNLSFYCNCTEDFTGEYCQFENSAACVTLNP 157
++G Y + C +P +C + + C C ++ G+ C ++ C T P
Sbjct: 90 GWQGLYCD-----KCIPHPGCVHGICNE----PWQCLCETNWGGQLCD-KDLNYCGTHQP 139
Query: 158 CQNNATCVASPGEKQITCLC 177
C N TC + G + C C
Sbjct: 140 CLNGGTCS-NTGPDKYQCSC 158
Score = 51.6 bits (124), Expect = 7e-09
Identities = 25/111 (22%), Positives = 40/111 (36%), Gaps = 14/111 (12%)
Query: 42 VDHCLTDPCLGHGTCINRSDRYQCLCTPRYSGNNCEKDNGDCSSNPCLNDGVCVD----- 96
C HG+C C C + G C+ C +P G+C +
Sbjct: 65 RAICRQGCSPKHGSCK---LPGDCRCQYGWQGLYCD----KCIPHPGCVHGICNEPWQCL 117
Query: 97 --EVYKGRYWELPEIRDCTSNPCLNDCVCVDDGNLSFYCNCTEDFTGEYCQ 145
+ G+ + T PCLN C + G + C+C E ++G C+
Sbjct: 118 CETNWGGQLCDKDLNYCGTHQPCLNGGTCSNTGPDKYQCSCPEGYSGPNCE 168
Score = 47.4 bits (113), Expect = 2e-07
Identities = 21/126 (16%), Positives = 28/126 (22%), Gaps = 21/126 (16%)
Query: 45 CLTDPCLGHGTCINRSDRYQCLCTPRYSGNNCEKDNGDCSSNPCLNDGVCVDEVYK---- 100
+ HG+ R C Y G C K C D+
Sbjct: 2 RGSHHHHHHGSIEGR---SAVTCDDYYYGFGCNK---FCRPRDDFFGHYACDQNGNKTCM 55
Query: 101 -GRYWELPEIRDCTSNPCLNDCVCVDDGNLSFYCNCTEDFTGEYCQFENSAACVTLNPCQ 159
G C C G+ C C + G YC +P
Sbjct: 56 EGWMGPECNRAICRQGCSPKHGSCKLPGD----CRCQYGWQGLYCDKCIP------HPGC 105
Query: 160 NNATCV 165
+ C
Sbjct: 106 VHGICN 111
>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor
complex, blood coagulation, CL PAIR of basic residues,
disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A
{Homo sapiens}
Length = 317
Score = 57.0 bits (138), Expect = 2e-10
Identities = 22/128 (17%), Positives = 40/128 (31%), Gaps = 29/128 (22%)
Query: 43 DHCLTDPCLGHGTCINRSDRYQCLCTPRYSGNNCEKDNGDCSSNPCLNDGVCVDEVYKGR 102
C++ PCL +G+C + Y C C+P Y G+NCE +C
Sbjct: 6 SPCISQPCLHNGSCQDSIWGYTCTCSPGYEGSNCELAKNECHPERT-------------- 51
Query: 103 YWELPEIRDCTSNPCLNDCVCVDDGNLSFYCNCTEDFTGEYCQFENSAACVTLNPCQNNA 162
+ C + C+ G S+ C+C + + + +
Sbjct: 52 ------------DGCQHFCL---PGQESYTCSCAQGYRLGEDHKQCVPHDQCACGVLTSE 96
Query: 163 TCVASPGE 170
+
Sbjct: 97 KRAPDLQD 104
Score = 27.4 bits (61), Expect = 2.4
Identities = 8/49 (16%), Positives = 12/49 (24%)
Query: 40 SKVDHCLTDPCLGHGTCINRSDRYQCLCTPRYSGNNCEKDNGDCSSNPC 88
+K + C+ + Y C C Y K C
Sbjct: 42 AKNECHPERTDGCQHFCLPGQESYTCSCAQGYRLGEDHKQCVPHDQCAC 90
>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling
pathway, WNT antagonist, MO cancer, glycosaminoglycan;
HET: PCF NAG FUC SCR; 3.95A {Homo sapiens}
Length = 324
Score = 53.3 bits (128), Expect = 5e-09
Identities = 30/126 (23%), Positives = 42/126 (33%), Gaps = 26/126 (20%)
Query: 49 PCLGHGTCINRSDRYQCLCTPRYSGNNCEKDNGDCSSNPCLNDGVCVDEV-------YKG 101
C G C +R C C + G +CEK + C+N G+CV + G
Sbjct: 154 GCRNGGFCN---ERRICECPDGFHGPHCEKA---LCTPRCMNGGLCVTPGFCICPPGFYG 207
Query: 102 RYWELPEIRDCTSNPCLNDCVCVDDGNLSFYCNCTEDFTGEYCQFENSAACVTLNPCQNN 161
+ + S C N C G C C GE C+ PC+N
Sbjct: 208 VNCD----KANCSTTCFNGGTCFYPGK----CICPPGLEGEQCEI-----SKCPQPCRNG 254
Query: 162 ATCVAS 167
C+
Sbjct: 255 GKCIGK 260
Score = 50.6 bits (121), Expect = 4e-08
Identities = 25/124 (20%), Positives = 39/124 (31%), Gaps = 23/124 (18%)
Query: 45 CLTDPCLGHGTCINRSDRYQCLCTPRYSGNNCEKDNGDCSSNPCLNDGVCVDEV------ 98
+ C GTC +C+C P G CE PC N G C+ +
Sbjct: 214 NCSTTCFNGGTCFYP---GKCICPPGLEGEQCEI---SKCPQPCRNGGKCIGKSKCKCSK 267
Query: 99 -YKGRYWELPEIRDCTSNPCLNDCVCVDDGNLSFYCNCTEDFTGEYCQFENSAACVTLNP 157
Y+G + C C + C C E + G +C A+ +
Sbjct: 268 GYQGDLCS----KPVCEPGCGAHGTCHEPNK----CQCQEGWHGRHCNKRYEASL--IGT 317
Query: 158 CQNN 161
++
Sbjct: 318 KHHH 321
Score = 49.5 bits (118), Expect = 1e-07
Identities = 21/130 (16%), Positives = 35/130 (26%), Gaps = 23/130 (17%)
Query: 45 CLTDPCLGHGTCINRSDRYQCLCTPRYSGNNCEKDNGDCSSNPCLNDGVCVD-------E 97
+ + + + C++ C N G C + +
Sbjct: 115 GVAAFEVDVIVMNSEGNTILKTPQNAIFFKTCQQ---AECPGGCRNGGFCNERRICECPD 171
Query: 98 VYKGRYWELPEIRDCTSNPCLNDCVCVDDGNLSFYCNCTEDFTGEYCQFENSAACVTLNP 157
+ G + E + + C+N +CV G C C F G C
Sbjct: 172 GFHGPHCE----KALCTPRCMNGGLCVTPGF----CICPPGFYGVNCDK-----ANCSTT 218
Query: 158 CQNNATCVAS 167
C N TC
Sbjct: 219 CFNGGTCFYP 228
Score = 37.9 bits (88), Expect = 8e-04
Identities = 10/44 (22%), Positives = 15/44 (34%), Gaps = 3/44 (6%)
Query: 49 PCLGHGTCINRSDRYQCLCTPRYSGNNCEKDNGDCSSNPCLNDG 92
C HGTC + +C C + G +C K +
Sbjct: 282 GCGAHGTCH---EPNKCQCQEGWHGRHCNKRYEASLIGTKHHHH 322
>1aut_L Activated protein C; serine proteinase, plasma calcium binding,
glycoprotein, HYD hydrolase inhibitor complex, blood
clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1
g.3.11.1 PDB: 3f6u_L*
Length = 114
Score = 49.3 bits (118), Expect = 2e-08
Identities = 22/102 (21%), Positives = 36/102 (35%), Gaps = 13/102 (12%)
Query: 42 VDHCLTDPCLGHGTCINRSDRYQCLCTPRYSGNNCEK--DNGDCSSNPCLNDGVCVDEV- 98
++H C GHGTCI+ + C C + G C++ +CS + C++EV
Sbjct: 14 LEHPCASLCCGHGTCIDGIGSFSCDCRSGWEGRFCQREVSFLNCSLDNGGCTHYCLEEVG 73
Query: 99 ---------YKGRYWELPEIRDCTSNPCLNDCVCVDDGNLSF 131
YK L + PC ++
Sbjct: 74 WRRCSCAPGYKLGDDLL-QCHPAVKFPCGRPWKRMEKKRSHL 114
Score = 46.6 bits (111), Expect = 2e-07
Identities = 15/101 (14%), Positives = 26/101 (25%), Gaps = 15/101 (14%)
Query: 12 CESDINECETVKDVCNYGICVNTNGN---------------GNSKVDHCLTDPCLGHGTC 56
C E C +G C++ G+ +C D C
Sbjct: 9 CLVLPLEHPCASLCCGHGTCIDGIGSFSCDCRSGWEGRFCQREVSFLNCSLDNGGCTHYC 68
Query: 57 INRSDRYQCLCTPRYSGNNCEKDNGDCSSNPCLNDGVCVDE 97
+ +C C P Y + PC +++
Sbjct: 69 LEEVGWRRCSCAPGYKLGDDLLQCHPAVKFPCGRPWKRMEK 109
Score = 37.8 bits (88), Expect = 3e-04
Identities = 16/71 (22%), Positives = 30/71 (42%), Gaps = 1/71 (1%)
Query: 105 ELPEIRDCTSNPCLNDCVCVDDGNLSFYCNCTEDFTGEYCQFENSAACVTLNPCQNNATC 164
+ + ++ C C+D SF C+C + G +CQ E S +L+ C
Sbjct: 10 LVLPLEHPCASLCCGHGTCIDGIG-SFSCDCRSGWEGRFCQREVSFLNCSLDNGGCTHYC 68
Query: 165 VASPGEKQITC 175
+ G ++ +C
Sbjct: 69 LEEVGWRRCSC 79
>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET:
NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A*
Length = 1245
Score = 46.4 bits (109), Expect = 2e-06
Identities = 22/143 (15%), Positives = 44/143 (30%), Gaps = 13/143 (9%)
Query: 6 ISLSTLCESDINECETVKDVCNYGICVNTNGNGNSKVDHCLTDPCLGHGTCINRSDRYQC 65
I + S ++ + + + G+ + CL G C D+ C
Sbjct: 154 IRDVRVQSSLALPVDSGEVKLDDEPPNSGGGSPCEAGEEGEGGVCLNGGVCSVVDDQAVC 213
Query: 66 LCT-PRYSGNNCEKDNGDCSSNPCLNDGVCVDEVYKGRYWELPEI----RDCTSNPCL-- 118
C+ + G +C + + + ++ C D EI + N +
Sbjct: 214 DCSRTGFRGKDCSQGKEEYIATFKGSEYFCYDLSQNPIQSSSDEITLSFKTLQRNGLMLH 273
Query: 119 ----NDCVCVD--DGNLSFYCNC 135
D V + +G +S N
Sbjct: 274 TGKSADYVNLALKNGAVSLVINL 296
Score = 37.9 bits (87), Expect = 0.001
Identities = 16/73 (21%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Query: 36 GNGNSKVDHCLTDPCLGHGTCINRSDRYQCLCTPR-YSGNNCEKDNGDCSSNPCLNDGVC 94
CL++PC +G C + +RY C C+ Y G +CE++ S + + +
Sbjct: 613 SCSRETAKPCLSNPCKNNGMCRDGWNRYVCDCSGTGYLGRSCEREATVLSYDGSMFMKIQ 672
Query: 95 VDEVYKGRYWELP 107
+ V ++
Sbjct: 673 LPVVMHTEAEDVS 685
Score = 36.0 bits (82), Expect = 0.006
Identities = 11/47 (23%), Positives = 17/47 (36%), Gaps = 1/47 (2%)
Query: 43 DHCLTDPCLGHGTCINRSDRYQCLCT-PRYSGNNCEKDNGDCSSNPC 88
C D C G C+ + D + C C+ +SG C +
Sbjct: 1018 TTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGTTYIFSKG 1064
Score = 32.1 bits (72), Expect = 0.091
Identities = 17/103 (16%), Positives = 30/103 (29%), Gaps = 2/103 (1%)
Query: 45 CLTDPCLGHGTCINRSDRYQCLCTPRYSGNNCEKDNGDCSSNPCLNDGVCVDEVYKGRYW 104
C+ D + G + + T + + C SNPC N+G+C D +
Sbjct: 585 CIRDLFID-GQSKDIRQMAEVQSTAGVKPSCSRETAKPCLSNPCKNNGMCRDG-WNRYVC 642
Query: 105 ELPEIRDCTSNPCLNDCVCVDDGNLSFYCNCTEDFTGEYCQFE 147
+ + V DG++ E
Sbjct: 643 DCSGTGYLGRSCEREATVLSYDGSMFMKIQLPVVMHTEAEDVS 685
Score = 31.4 bits (70), Expect = 0.18
Identities = 7/66 (10%), Positives = 15/66 (22%), Gaps = 3/66 (4%)
Query: 112 CTSNPCLNDCVCVDDGNLSFYCNCTEDFTGEYCQFENSAACVTLNPCQNNATCVASPGEK 171
+ + + + + + +G E C N C +
Sbjct: 153 WIRDVRVQSSLALPVDSGEVKLDDEPPNSGGGSPCEAGEEGEG-GVCLNGGVCSVVDDQ- 210
Query: 172 QITCLC 177
C C
Sbjct: 211 -AVCDC 215
Score = 30.2 bits (67), Expect = 0.37
Identities = 8/24 (33%), Positives = 11/24 (45%)
Query: 73 GNNCEKDNGDCSSNPCLNDGVCVD 96
CE + C + C N GVC+
Sbjct: 1010 ERGCEGPSTTCQEDSCSNQGVCLQ 1033
>1edm_B Factor IX; epidermal growth factor, EGF, calcium- binding,
EGF-like domain, structure and function, coagulation
factor; 1.50A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ixa_A
Length = 39
Score = 40.5 bits (96), Expect = 5e-06
Identities = 14/36 (38%), Positives = 21/36 (58%)
Query: 42 VDHCLTDPCLGHGTCINRSDRYQCLCTPRYSGNNCE 77
D C ++PCL G+C + + Y+C C + G NCE
Sbjct: 3 GDQCESNPCLNGGSCKDDINSYECWCPFGFEGKNCE 38
Score = 35.9 bits (84), Expect = 3e-04
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 108 EIRDCTSNPCLNDCVCVDDGNLSFYCNCTEDFTGEYCQF 146
+ C SNPCLN C DD N S+ C C F G+ C+
Sbjct: 2 DGDQCESNPCLNGGSCKDDIN-SYECWCPFGFEGKNCEL 39
>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation,
neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos
taurus}
Length = 410
Score = 42.3 bits (99), Expect = 3e-05
Identities = 11/47 (23%), Positives = 17/47 (36%), Gaps = 1/47 (2%)
Query: 43 DHCLTDPCLGHGTCINRSDRYQCLCT-PRYSGNNCEKDNGDCSSNPC 88
C D C G C+ + D + C C+ +SG C +
Sbjct: 186 TTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGTTYIFSKG 232
Score = 35.8 bits (82), Expect = 0.005
Identities = 11/42 (26%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
Query: 112 CTSNPCLNDCVCVDDGNLSFYCNCTE-DFTGEYCQFENSAAC 152
C + C N VC+ + F C+C+ F+G C +
Sbjct: 188 CQEDSCSNQGVCLQQWD-GFSCDCSMTSFSGPLCNDPGTTYI 228
Score = 31.1 bits (70), Expect = 0.16
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 74 NNCEKDNGDCSSNPCLNDGVCVDE 97
CE + C + C N GVC+ +
Sbjct: 179 RGCEGPSTTCQEDSCSNQGVCLQQ 202
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion,
pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo
sapiens} PDB: 3k71_B* 3k72_B*
Length = 687
Score = 41.6 bits (97), Expect = 6e-05
Identities = 18/101 (17%), Positives = 28/101 (27%), Gaps = 15/101 (14%)
Query: 49 PCLGHGTCINRSDRYQCLCTPRYSGNNCEKDNGDCSSNPCLNDGVCVD-----EVYKGRY 103
C G G C C C Y C++ +PC C + + G+
Sbjct: 567 ECSGRGRCRC----NVCECHSGYQLPLCQE--CPGCPSPCGKYISCAECLKFEKGPFGKN 620
Query: 104 WELPEIRDCTSNPCLNDCVCVDDGNLSFYCNCTEDFTGEYC 144
SN + C + + C +T E
Sbjct: 621 CSAACPGLQLSNNPVKGRTCKERDS----EGCWVAYTLEQQ 657
Score = 33.1 bits (75), Expect = 0.045
Identities = 32/187 (17%), Positives = 45/187 (24%), Gaps = 31/187 (16%)
Query: 6 ISLSTLCESDINECETVKDVCNYGICVNTNGNGNSKVDHCLTDPCLGHGTCINRSDRYQC 65
++ + + + + V + C G G C
Sbjct: 393 VTATECIQEQSFVIRALGFTDIVTVQVLPQCECRCRDQSRDRSLCHGKGFLEC----GIC 448
Query: 66 LCTPRYSGNNCEKDNG-------------DCSSNPCLNDGVCVD--------EVYKGRYW 104
C Y G NCE D +S C G CV +V +
Sbjct: 449 RCDTGYIGKNCECQTQGRSSQELEGSCRKDNNSIICSGLGDCVCGQCLCHTSDVPGKLIY 508
Query: 105 ELPEIRDCTSNPCLNDCVCVDDGNLSFY---CNCTEDFTGEYCQFENS---AACVTLNPC 158
D + N VC G + C C F G CQ E + C
Sbjct: 509 GQYCECDTINCERYNGQVCGGPGRGLCFCGKCRCHPGFEGSACQCERTTEGCLNPRRVEC 568
Query: 159 QNNATCV 165
C
Sbjct: 569 SGRGRCR 575
Score = 30.8 bits (69), Expect = 0.22
Identities = 14/89 (15%), Positives = 21/89 (23%), Gaps = 10/89 (11%)
Query: 45 CLTDPCLGHGTCINRSDRYQCLCTPRYSGNNCEKD-NGDCSSNPCLNDGVCV----DEVY 99
PC + +C G NC G SN + C + +
Sbjct: 595 GCPSPCGKYISCAEC-----LKFEKGPFGKNCSAACPGLQLSNNPVKGRTCKERDSEGCW 649
Query: 100 KGRYWELPEIRDCTSNPCLNDCVCVDDGN 128
E + D CV +
Sbjct: 650 VAYTLEQQDGMDRYLIYVDESRECVAGPD 678
Score = 27.8 bits (61), Expect = 2.6
Identities = 14/131 (10%), Positives = 28/131 (21%), Gaps = 7/131 (5%)
Query: 47 TDPCLGHGTCINRSDRYQCLCTPRYSGNNCEKDNGDCSSNPCLNDGVCVDEVYKGRYWEL 106
T G C + + C ++ D V V + +
Sbjct: 369 THRNQPRGDCDGVQINVPITFQVKVTATECIQEQSFVIRALGFTDIVTVQVLPQCECRC- 427
Query: 107 PEIRDCTSNPCLNDCVCVDDGNLSFYCNCTEDFTGEYCQFENSAACVTLNPCQNNATCVA 166
+ + C C C + G+ C+ + +
Sbjct: 428 -RDQSRDRSLCHGKGFLECG-----ICRCDTGYIGKNCECQTQGRSSQELEGSCRKDNNS 481
Query: 167 SPGEKQITCLC 177
C+C
Sbjct: 482 IICSGLGDCVC 492
>1tpg_A T-plasminogen activator F1-G; plasminogen activation; NMR {Homo
sapiens} SCOP: g.3.11.1 g.27.1.1 PDB: 1tpm_A 1tpn_A
Length = 91
Score = 38.6 bits (90), Expect = 1e-04
Identities = 9/49 (18%), Positives = 14/49 (28%), Gaps = 1/49 (2%)
Query: 55 TCINRSDRYQCLCTPRYSGNNCEKDNGDCSSNPCLNDGVCVDEVYKGRY 103
+ + C C + CS C N G C +Y +
Sbjct: 24 PVLRSNRVEYCWCNSGRAQC-HSVPVKSCSEPRCFNGGTCQQALYFSDF 71
Score = 33.2 bits (76), Expect = 0.008
Identities = 12/46 (26%), Positives = 17/46 (36%), Gaps = 2/46 (4%)
Query: 36 GNGNSKVDHCLTDPCLGHGTCIN--RSDRYQCLCTPRYSGNNCEKD 79
+ V C C GTC + C C ++G +CE D
Sbjct: 42 QCHSVPVKSCSEPRCFNGGTCQQALYFSDFVCQCPEGFAGKSCEID 87
Score = 30.9 bits (70), Expect = 0.066
Identities = 13/55 (23%), Positives = 15/55 (27%), Gaps = 3/55 (5%)
Query: 123 CVDDGNLSFYCNCTEDFTGEYCQFENSAACVTLNPCQNNATCVASPGEKQITCLC 177
V N YC C C +C C N TC + C C
Sbjct: 24 PVLRSNRVEYCWCNSGRAQ--CHSVPVKSCSE-PRCFNGGTCQQALYFSDFVCQC 75
>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET:
NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B*
Length = 423
Score = 40.5 bits (94), Expect = 1e-04
Identities = 28/154 (18%), Positives = 42/154 (27%), Gaps = 24/154 (15%)
Query: 45 CLTDPCLGHGTCINRSDRYQCLCTPRYSGNNCEKD-----NGDCSSNPCLNDGVCVDEV- 98
L C+ +G C + +C+C P + G CEK G C C V
Sbjct: 200 HLCTACMNNGVCHEDT--GECICPPGFMGRTCEKACELHTFGRTCKERCSGQEGCKSYVF 257
Query: 99 -------------YKGRYWELPEIRDCTSNPCLNDCVCVDDG--NLSFYCNCTEDFTGEY 143
+KG C C C + + C C+ + G
Sbjct: 258 CLPDPYGCSCATGWKGLQCNEACHPGFYGPDCKLRCSCNNGEMCDRFQGCLCSPGWQGLQ 317
Query: 144 CQFENSAACVTLNPCQNNATCVASPGEKQITCLC 177
C+ E T + G+ C
Sbjct: 318 CEREGIPRM-TPKIVDLPDHIEVNSGKFNPICKA 350
Score = 38.5 bits (89), Expect = 6e-04
Identities = 20/155 (12%), Positives = 34/155 (21%), Gaps = 21/155 (13%)
Query: 45 CLTDPCLGHGTCINR----SDRYQCLCTPRYSGNNCEKDNGDCSSNP-------CLNDGV 93
+ C G C + D Y C C + G C + P C N +
Sbjct: 241 TCKERCSGQEGCKSYVFCLPDPYGCSCATGWKGLQCNEACHPGFYGPDCKLRCSCNNGEM 300
Query: 94 CVDEV-------YKGRYWELPEIRDCTSNPCLNDCVCVDDGNLSFYCNCTEDFTGEYCQF 146
C ++G E I T + N +G
Sbjct: 301 CDRFQGCLCSPGWQGLQCEREGIPRMTPKIVDLPDHIEVNSG---KFNPICKASGWPLPT 357
Query: 147 ENSAACVTLNPCQNNATCVASPGEKQITCLCLKEV 181
V + + + + +
Sbjct: 358 NEEMTLVKPDGTVLHPKDFNHTDHFSVAIFTIHRI 392
Score = 32.4 bits (73), Expect = 0.074
Identities = 18/132 (13%), Positives = 39/132 (29%), Gaps = 17/132 (12%)
Query: 53 HGTCINRSDRYQCLCTPRYSGNNCEKDNGDCSSNPCLNDGVCVDEVYKGRYWELPEIR-- 110
+G+ I+ R++ + + + S + + + +
Sbjct: 136 NGSFIHSVPRHEVPDILEVHLPHAQPQDAGVYSARYIGGNLFTSAFTRLIVRRCEAQKWG 195
Query: 111 ---DCTSNPCLNDCVCVDDGNLSFYCNCTEDFTGEYCQ---------FENSAACVTLNPC 158
+ C+N+ VC +D + C C F G C+ C C
Sbjct: 196 PECNHLCTACMNNGVCHED---TGECICPPGFMGRTCEKACELHTFGRTCKERCSGQEGC 252
Query: 159 QNNATCVASPGE 170
++ C+ P
Sbjct: 253 KSYVFCLPDPYG 264
>1g1t_A E-selectin; EGF, adhesion molecule, SLEX, immune system, membrane
protein; HET: SIA GAL MAG FUC; 1.50A {Homo sapiens}
SCOP: d.169.1.1 g.3.11.1 PDB: 1esl_A
Length = 157
Score = 37.0 bits (86), Expect = 0.001
Identities = 14/38 (36%), Positives = 18/38 (47%)
Query: 41 KVDHCLTDPCLGHGTCINRSDRYQCLCTPRYSGNNCEK 78
C C GHG C+ + Y C C P +SG CE+
Sbjct: 118 YTAACTNTSCSGHGECVETINNYTCKCDPGFSGLKCEQ 155
Score = 29.3 bits (66), Expect = 0.45
Identities = 11/39 (28%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 108 EIRDCTSNPCLNDCVCVDDGNLSFYCNCTEDFTGEYCQF 146
CT+ C CV+ N ++ C C F+G C+
Sbjct: 118 YTAACTNTSCSGHGECVETIN-NYTCKCDPGFSGLKCEQ 155
>1g1s_A P-selectin; selectin, lectin, EGF, sulphated, SLEX, immune system,
membr protein; HET: TYS SIA GAL NAG FUC NGA; 1.90A {Homo
sapiens} SCOP: d.169.1.1 g.3.11.1 PDB: 1g1r_A* 1g1q_A*
1fsb_A
Length = 162
Score = 36.3 bits (84), Expect = 0.002
Identities = 12/43 (27%), Positives = 14/43 (32%)
Query: 41 KVDHCLTDPCLGHGTCINRSDRYQCLCTPRYSGNNCEKDNGDC 83
C C G C+ Y C C P + G CE D
Sbjct: 118 YTASCQDMSCSKQGECLETIGNYTCSCYPGFYGPECEYVRDDD 160
Score = 27.8 bits (62), Expect = 1.3
Identities = 8/42 (19%), Positives = 15/42 (35%), Gaps = 1/42 (2%)
Query: 108 EIRDCTSNPCLNDCVCVDDGNLSFYCNCTEDFTGEYCQFENS 149
C C C++ ++ C+C F G C++
Sbjct: 118 YTASCQDMSCSKQGECLETIG-NYTCSCYPGFYGPECEYVRD 158
>3cfw_A L-selectin; EGF, cell adhesion, EGF-like domain, glycoprotein,
membrane, sushi, transmembrane; HET: NAG MAN BMA; 2.20A
{Homo sapiens}
Length = 164
Score = 36.3 bits (84), Expect = 0.002
Identities = 12/37 (32%), Positives = 15/37 (40%)
Query: 41 KVDHCLTDPCLGHGTCINRSDRYQCLCTPRYSGNNCE 77
C C GHG C+ + Y C C Y G C+
Sbjct: 118 YTASCQPWSCSGHGECVEIINNYTCNCDVGYYGPQCQ 154
Score = 28.2 bits (63), Expect = 1.0
Identities = 12/39 (30%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Query: 108 EIRDCTSNPCLNDCVCVDDGNLSFYCNCTEDFTGEYCQF 146
C C CV+ N ++ CNC + G CQF
Sbjct: 118 YTASCQPWSCSGHGECVEIIN-NYTCNCDVGYYGPQCQF 155
>3nt1_A Prostaglandin-endoperoxide synthase 2; prostaglandin H2 synthase,
cyclooxygenase-2, naproxen, oxido; HET: NAG BOG NPS HEM;
1.73A {Mus musculus} PDB: 3ln1_A* 3mqe_A* 3ln0_A*
3ntb_A* 3q7d_A* 1pxx_A* 3pgh_A* 1cx2_A* 4cox_A* 5cox_A*
6cox_A* 3qh0_A* 3qmo_A* 4e1g_A* 3olu_A* 3olt_A* 3hs5_A*
3hs6_A* 3hs7_A* 3krk_A* ...
Length = 587
Score = 36.6 bits (84), Expect = 0.003
Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 112 CTSNPCLNDCVCVDDGNLSFYCNCTE-DFTGEYCQF 146
C SNPC N C+ G + C+CT F GE C
Sbjct: 4 CCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENCTT 39
Score = 34.7 bits (79), Expect = 0.013
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 45 CLTDPCLGHGTCINR-SDRYQCLCTP-RYSGNNCEK 78
C ++PC G C++ D+Y+C CT + G NC
Sbjct: 4 CCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENCTT 39
Score = 27.0 bits (59), Expect = 4.2
Identities = 8/13 (61%), Positives = 9/13 (69%)
Query: 83 CSSNPCLNDGVCV 95
C SNPC N G C+
Sbjct: 4 CCSNPCQNRGECM 16
Score = 26.6 bits (58), Expect = 6.0
Identities = 11/22 (50%), Positives = 12/22 (54%), Gaps = 1/22 (4%)
Query: 156 NPCQNNATCVASPGEKQITCLC 177
NPCQN C+ S G Q C C
Sbjct: 7 NPCQNRGECM-STGFDQYKCDC 27
>2f83_A Coagulation factor XI; protease, apple domain, hydrolase; HET: NAG;
2.87A {Homo sapiens} PDB: 2j8j_A 2j8l_A
Length = 625
Score = 36.7 bits (85), Expect = 0.003
Identities = 10/126 (7%), Positives = 20/126 (15%), Gaps = 12/126 (9%)
Query: 29 GICVNTNGNGNSKVDHCLTDPCLGHGTCINRSDRYQCLCTPRYSGNNCEKDNGDCSSN-- 86
+C+ L + + C + +
Sbjct: 253 NLCLLKTSESGLPSTRIKKSKALSGFSLQSCRHSIPVFCHSSFYHDTDFLGEELDIVAAK 312
Query: 87 -------PCLNDGVCVDEVYKGRYWELPEIRDCTSNPCLNDCVCVDDGNLSFYCNCTEDF 139
C N C Y + L + +
Sbjct: 313 SHEACQKLCTNAVRCQFFTYTPAQA---SCNEGKGKCYLKLSSNGSPTKILHGRGGISGY 369
Query: 140 TGEYCQ 145
T C+
Sbjct: 370 TLRLCK 375
>1q4g_A Prostaglandin G/H synthase 1; cyclooxygenase, non-steroidal
anti-inflammatory drug, peroxi prostaglandin synthase,
EGF-like domain; HET: BOG NAG NDG BMA MAN BFL HEM; 2.00A
{Ovis aries} SCOP: a.93.1.2 g.3.11.1 PDB: 1diy_A*
2ayl_A* 3kk6_A* 3n8v_A* 3n8w_A* 3n8x_A* 3n8y_A* 3n8z_A*
2oyu_P* 2oye_P* 1eqg_A* 1cqe_A* 1eqh_A* 1igz_A* 1igx_A*
1fe2_A* 1pge_A* 1pgf_A* 1pgg_A* 3n8w_B* ...
Length = 553
Score = 36.2 bits (83), Expect = 0.004
Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 112 CTSNPCLNDCVCVDDGNLSFYCNCTE-DFTGEYCQF 146
C PC + +CV G + C+CT ++G C
Sbjct: 5 CCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNCTI 40
Score = 36.2 bits (83), Expect = 0.004
Identities = 18/39 (46%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Query: 42 VDHCLTDPCLGHGTCINR-SDRYQCLCTPR-YSGNNCEK 78
V+ C PC G C+ DRYQC CT YSG NC
Sbjct: 2 VNPCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNCTI 40
Score = 27.3 bits (60), Expect = 3.5
Identities = 6/13 (46%), Positives = 8/13 (61%)
Query: 83 CSSNPCLNDGVCV 95
C PC + G+CV
Sbjct: 5 CCYYPCQHQGICV 17
Score = 26.5 bits (58), Expect = 5.6
Identities = 8/22 (36%), Positives = 10/22 (45%), Gaps = 1/22 (4%)
Query: 156 NPCQNNATCVASPGEKQITCLC 177
PCQ+ CV G + C C
Sbjct: 8 YPCQHQGICV-RFGLDRYQCDC 28
>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease
mutation, craniosynostosis, extracellular matrix,
fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens}
Length = 147
Score = 35.0 bits (81), Expect = 0.005
Identities = 21/129 (16%), Positives = 38/129 (29%), Gaps = 6/129 (4%)
Query: 42 VDHCLTDPCLGHGTCINRSDRYQCLCTPRYSGNNCEKDNGDCSSNPCLNDGVCVDEVYKG 101
+D C + PC +G C N + C C+ + + + + C +
Sbjct: 4 IDECESSPC-INGVCKNSPGSFICECSSESTLDPTKTICIETIKGTCWQTVIDGRCEINI 62
Query: 102 RYWELPEIRDCTSNPCLNDCVCVDDGNLSFYCNCTEDFTGEYCQF-ENSAACVTLNPCQN 160
L + C+S C C + ++ E+ C
Sbjct: 63 NGATLKS-QCCSSLGAAWGSPCTLC---QVDPICGKGYSRIKGTQCEDIDECEVFPGVCK 118
Query: 161 NATCVASPG 169
N CV + G
Sbjct: 119 NGLCVNTRG 127
Score = 26.5 bits (59), Expect = 4.0
Identities = 13/22 (59%), Positives = 15/22 (68%)
Query: 15 DINECETVKDVCNYGICVNTNG 36
DI+ECE VC G+CVNT G
Sbjct: 106 DIDECEVFPGVCKNGLCVNTRG 127
>1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein,
repeat, signal, multigene family, disease mutation,
matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1
g.3.11.1 PDB: 1emo_A
Length = 82
Score = 33.7 bits (78), Expect = 0.005
Identities = 23/83 (27%), Positives = 33/83 (39%), Gaps = 19/83 (22%)
Query: 15 DINECETVKDVCNYGICVNTNG------------NGNS--KVDHCLTDPCLGHGTCINRS 60
D++EC+ DVC +G C+NT+G GN D C G+GTC N
Sbjct: 4 DMDECKE-PDVCKHGQCINTDGSYRCECPFGYILAGNECVDTDECSVGNPCGNGTCKNVI 62
Query: 61 DRYQCLCTPRYSGNNCEKDNGDC 83
++C C + C
Sbjct: 63 GGFECTCEEGFEPG----PMMTC 81
>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB
domain, disease mutation, extracellular matrix,
polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A
Length = 162
Score = 35.0 bits (81), Expect = 0.005
Identities = 18/101 (17%), Positives = 24/101 (23%), Gaps = 16/101 (15%)
Query: 14 SDINECETVKDVCNYGICVNTNG-------------NGNSKVDHCLTDPCLGHGTCINRS 60
+D+NEC + G CVNT G + C +
Sbjct: 1 TDVNECLDPTTCIS-GNCVNTPGSYICDCPPDFELNPTRVGCVDTRSGNCYLDIRPRGDN 59
Query: 61 DRYQCLCTPRY--SGNNCEKDNGDCSSNPCLNDGVCVDEVY 99
C S +C G PC Y
Sbjct: 60 GDTACSNEIGVGVSKASCCCSLGKAWGTPCEMCPAVNTSEY 100
Score = 25.4 bits (56), Expect = 9.1
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 15 DINECETVKDVCNYGICVNTNG 36
DI+EC+ + +C G C+NT G
Sbjct: 121 DIDECQELPGLCQGGKCINTFG 142
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane,
secreted, protease, PALM hydrolase, developmental
protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo
sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Length = 463
Score = 35.7 bits (82), Expect = 0.006
Identities = 14/55 (25%), Positives = 20/55 (36%), Gaps = 4/55 (7%)
Query: 25 VCNYGICVNTNGNGNSKVDHCLTDP-CLGHGTCINRSDRYQCLCTPRYSGNNCEK 78
G C + G +P C G C+ + +CLC Y G CE+
Sbjct: 404 CTPTGKCCCSPGWEGDFCRTAKCEPACRHGGVCVRPN---KCLCKKGYLGPQCEQ 455
>3nxp_A Prethrombin-1; allostery, blood coagulation, hydro kringle, serine
protease, zymogen; HET: NAG; 2.20A {Homo sapiens}
Length = 424
Score = 35.2 bits (81), Expect = 0.008
Identities = 19/134 (14%), Positives = 31/134 (23%), Gaps = 16/134 (11%)
Query: 49 PCLGHGTCINRSDRYQCLCTPRYSGNNCEKDNGDCSSNPCLNDGVCVDEVYKGRYWELPE 108
PCL + ++ N C N + V+ + +
Sbjct: 35 PCLAWASAQAKALSKHQDFN----------SAVQLVENFCRNPDGDEEGVWCYVAGKPGD 84
Query: 109 IRDCTSNPCLNDCVCVDDGNLSFYCNCTEDF----TGEYCQFENSAACVTLNP-CQNNAT 163
C N C + G+ + T EY F N A + C
Sbjct: 85 FGYCDLNYCEEAV-EEETGDGLDEDSDRAIEGATATSEYQTFFNPATFGSGEADCGLRPL 143
Query: 164 CVASPGEKQITCLC 177
E +
Sbjct: 144 FEKKSLEDKTEREL 157
>1z6c_A Vitamin K-dependent protein S; EGF module, blood clotting; NMR
{Homo sapiens}
Length = 87
Score = 33.0 bits (76), Expect = 0.009
Identities = 18/72 (25%), Positives = 26/72 (36%), Gaps = 18/72 (25%)
Query: 15 DINECETVKDVCNYGICVNTNG------------NGNSK----VDHCLTDPCLGHGTCIN 58
D++EC +C +C N G N SK +D C + C C+N
Sbjct: 2 DVDECSLKPSICGTAVCKNIPGDFECECPEGYRYNLKSKSCEDIDECSENMC--AQLCVN 59
Query: 59 RSDRYQCLCTPR 70
Y C C +
Sbjct: 60 YPGGYTCYCDGK 71
>1lmj_A Fibrillin 1; EGF, calcium, microfibril, neonatal, marfan
syndrome, connective tissue, extracellular matrix,
structural protein; NMR {Homo sapiens} SCOP: g.3.11.1
g.3.11.1
Length = 86
Score = 32.6 bits (75), Expect = 0.011
Identities = 24/79 (30%), Positives = 32/79 (40%), Gaps = 18/79 (22%)
Query: 14 SDINECETVKDVCNYGICVNTNGN----------GNSK-------VDHCLTDPCL-GHGT 55
+DI+EC D+C G CVNT G+ +D C DP L G
Sbjct: 1 TDIDECRISPDLCGRGQCVNTPGDFECKCDEGYESGFMMMKNCMDIDECQRDPLLCRGGV 60
Query: 56 CINRSDRYQCLCTPRYSGN 74
C N Y+C C P + +
Sbjct: 61 CHNTEGSYRCECPPGHQLS 79
>2ygo_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling
pathway, WNT antagonist, MO cancer, glycosaminoglycan;
HET: MLY PCF NAG; 1.85A {Homo sapiens} PDB: 2ygp_A*
Length = 188
Score = 34.1 bits (77), Expect = 0.014
Identities = 16/118 (13%), Positives = 31/118 (26%), Gaps = 8/118 (6%)
Query: 28 YGICVNTNGNGNSKVDHCLTDPCLGHGTCINRSDRYQCLCTPRYSGNNCEKDNGDCSSNP 87
Y + + D + P LG + C G +
Sbjct: 70 YEFLSLRSLDXGIMADPTVNVPLLGTVPHXASVVQVGFPCLGXQDGVAAFE----VDVIV 125
Query: 88 CLNDGVCVDEVYKGRYWELPEIRDCTSNPCLNDCVCVDDGNLSFYCNCTEDFTGEYCQ 145
++G + + + + C N C + C C + F G +C+
Sbjct: 126 MNSEGNTILXTPQNAIFFKTCQQAECPGGCRNGGFCNERRI----CECPDGFHGPHCE 179
>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo
sapiens}
Length = 426
Score = 34.4 bits (78), Expect = 0.014
Identities = 20/116 (17%), Positives = 33/116 (28%), Gaps = 13/116 (11%)
Query: 38 GNSKVDHCLTDPCLGHG-TCINRSDRYQCLCTPRYSGNNCEKDNGDCSSNPCLNDGVCVD 96
S + C H C+ + + C C +G +C K + P G +
Sbjct: 287 AISDIKVRGRCKCNLHATVCVYDNSKLTCECEHNTTGPDCGKCKKNYQGRPWSP-GSYLP 345
Query: 97 EV-------YKGRYWELPEIRDCTSNPCLNDCVCVDDGNLSFYCNCTEDFTGEYCQ 145
+ D C N C ++ C C +TG C+
Sbjct: 346 IPKGAANACIPSISSIGTNVCDNELLHCQNGGTCHNNVR----CLCPAAYTGILCE 397
Score = 32.1 bits (72), Expect = 0.093
Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 3/48 (6%)
Query: 31 CVNTNGNGNSKVDHCLTDPCLGHGTCINRSDRYQCLCTPRYSGNNCEK 78
C+ + + + V C GTC N +CLC Y+G CEK
Sbjct: 354 CIPSISSIGTNVCDNELLHCQNGGTCHN---NVRCLCPAAYTGILCEK 398
Score = 26.3 bits (57), Expect = 7.3
Identities = 9/60 (15%), Positives = 18/60 (30%)
Query: 86 NPCLNDGVCVDEVYKGRYWELPEIRDCTSNPCLNDCVCVDDGNLSFYCNCTEDFTGEYCQ 145
P + + + ++ + +I+ C N C C + TG C
Sbjct: 268 RPAVGEIFVDELHLARYFYAISDIKVRGRCKCNLHATVCVYDNSKLTCECEHNTTGPDCG 327
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell
adhesion, DI mutation, glycoprotein, HOST-virus
interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo
sapiens} PDB: 3ije_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Length = 690
Score = 34.3 bits (78), Expect = 0.016
Identities = 27/145 (18%), Positives = 37/145 (25%), Gaps = 26/145 (17%)
Query: 43 DHCLTDPCLGHGTCINRSDRYQCLCTPRYSGNNCEKDNGDC------------SSNPCLN 90
+ G+GT C C P + G+ CE D C
Sbjct: 442 EPNSHRCNNGNGTFEC----GVCRCGPGWLGSQCECSEEDYRPSQQDECSPREGQPVCSQ 497
Query: 91 DGVCVDEV------YKGRYWELPEIRDCTSNPCLNDCVCVDDGN-LSFYCNCTEDFTGEY 143
G C+ G+ D S +C G C C D+TG Y
Sbjct: 498 RGECLCGQCVCHSSDFGKITGKYCECDDFSCVRYKGEMCSGHGQCSCGDCLCDSDWTGYY 557
Query: 144 CQF---ENSAACVTLNPCQNNATCV 165
C ++ C C
Sbjct: 558 CNCTTRTDTCMSSNGLLCSGRGKCE 582
Score = 30.4 bits (68), Expect = 0.31
Identities = 21/108 (19%), Positives = 33/108 (30%), Gaps = 20/108 (18%)
Query: 49 PCLGHGTCINRSDRYQCLCT-PRYSGNNCEKDNGDCSSNPCLNDGVCVD--EVYKGRYWE 105
C G G C C+C P G+ CEK + C CV+ + +G +
Sbjct: 574 LCSGRGKCEC----GSCVCIQPGSYGDTCEKC--PTCPDACTFKKECVECKKFDRGALHD 627
Query: 106 LPEIRDCTSNPCLNDCVCVDDGNLSFYCNCTEDFTGEYCQFENSAACV 153
+ C ++ V C ++N CV
Sbjct: 628 EN----TCNRYCRDEIESVK-------ELKDTGKDAVNCTYKNEDDCV 664
>1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY
acidic protein fold, fibronectin type III fold, hormone-
growth factor complex; NMR {Homo sapiens}
Length = 680
Score = 33.4 bits (75), Expect = 0.039
Identities = 15/80 (18%), Positives = 23/80 (28%), Gaps = 4/80 (5%)
Query: 45 CLTDPCLGHGTCINRSDRYQCLCTPRYSGNNCEKDNGDC--SSNPCLNDGVCVDEVYKGR 102
C + Y+CL + + GDC CV+
Sbjct: 73 LRKHQCQSFCEPLFPKKSYECLTSCEFLKYILLVKQGDCPAPEKASGFAAACVESCEVDN 132
Query: 103 YWELPEIRDCTSNPCLNDCV 122
E ++ C SN C + C
Sbjct: 133 --ECSGVKKCCSNGCGHTCQ 150
>2e26_A Reelin, reeler protein; signaling protein; HET: NAG BMA; 2.00A {Mus
musculus} PDB: 3a7q_A*
Length = 725
Score = 31.9 bits (71), Expect = 0.11
Identities = 17/113 (15%), Positives = 29/113 (25%), Gaps = 4/113 (3%)
Query: 48 DPCLGHGTCINRSDRYQCLCTPRYSGNNCEKDNGDCSSNPCLNDGVCVDEVYKGRYWELP 107
D C GHG C+ C+C ++ G C++ + N
Sbjct: 539 DMCSGHGRCVQG----SCVCDEQWGGLYCDEPETSLPTQLKDNFNRAPSNQNWLTVSGGK 594
Query: 108 EIRDCTSNPCLNDCVCVDDGNLSFYCNCTEDFTGEYCQFENSAACVTLNPCQN 160
C + + E+ QF C+ +N
Sbjct: 595 LSTVCGAVASGLALHFSGGCSRLLVTVDLNLTNAEFIQFYFMYGCLITPSNRN 647
Score = 26.5 bits (57), Expect = 5.5
Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 8/69 (11%)
Query: 14 SDINECETVKDVCNYGICVNTNGNGNSKVDHCLTDP-----CLGHGTCINRSDRYQCLCT 68
++ C +V+ G + +D+ P C GHG+CIN + +C+C
Sbjct: 151 GKLHLCGSVRFRWYQGFYPAGSQPVTWAIDNVYIGPQCEEMCYGHGSCINGT---KCICD 207
Query: 69 PRYSGNNCE 77
P YSG C+
Sbjct: 208 PGYSGPTCK 216
>1egf_A Epidermal growth factor; NMR {Mus musculus} SCOP: g.3.11.1 PDB:
1epg_A 1eph_A 1epi_A 1epj_A 3egf_A 1gk5_A
Length = 53
Score = 28.2 bits (63), Expect = 0.29
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 107 PEIRDCTSNPCLNDCVCVDDGNL-SFYCNCTEDFTGEYCQFEN 148
P CLN VC+ +L S+ CNC ++G+ CQ +
Sbjct: 4 PGCPSSYDGYCLNGGVCMHIESLDSYTCNCVIGYSGDRCQTRD 46
Score = 27.1 bits (60), Expect = 0.68
Identities = 14/43 (32%), Positives = 16/43 (37%), Gaps = 2/43 (4%)
Query: 37 NGNSKVDHCLTDPCLGHGTC--INRSDRYQCLCTPRYSGNNCE 77
N CL G C I D Y C C YSG+ C+
Sbjct: 1 NSYPGCPSSYDGYCLNGGVCMHIESLDSYTCNCVIGYSGDRCQ 43
>4fbr_A Lectin, myxobacterial hemagglutinin; beta-barrel, HIV-inactivating,
carbohydrate binding protein; 1.60A {Myxococcus xanthus}
PDB: 4fbv_A*
Length = 267
Score = 30.1 bits (67), Expect = 0.35
Identities = 14/138 (10%), Positives = 31/138 (22%), Gaps = 17/138 (12%)
Query: 45 CLTDPCLGHGTCINRSDRYQCLCTPRYSGNNCEKDNGD------CSSNPCLNDGVCVDEV 98
++ G + + Y + + D S+ P + GV V
Sbjct: 102 AVSIKSNDGGKTLTGTTTYNGEGPIGFKSEVTDGDTYSVENQWGGSAAPWHSGGVWVLGT 161
Query: 99 YKGRYWELPEIRDCTSNPCLNDCVCVDDGNLSFYCNCTEDFTGEYCQFENSAACVTLN-- 156
+ + + L+ G +++ F G +
Sbjct: 162 RGKQNVINVDAKSNDGGKTLS-------GTMTYNGEGPIGFRGTLTSPDTYTVENQWGGS 214
Query: 157 --PCQNNATCVASPGEKQ 172
P + Q
Sbjct: 215 TAPWNPGGFWMIGARNGQ 232
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G,
beta-propeller, protein binding; 3.30A {Rattus
norvegicus}
Length = 386
Score = 29.0 bits (64), Expect = 0.79
Identities = 17/125 (13%), Positives = 28/125 (22%), Gaps = 9/125 (7%)
Query: 42 VDHCLTDPCLGHGTCINRSDRYQCLCTPRYSGNNCEKDNGDCSSNPCLNDGVC--VDEVY 99
++C + C QC C Y + D N C +G C
Sbjct: 3 EENCNVNNGGCAQKCQMIRGAVQCTCHTGYRLTEDGRTCQDV--NECAEEGYCSQGCTNS 60
Query: 100 KGRYWELPEIRDCTSNPCLNDCVCVDDGNLSFYCNCTEDFTGEYCQFENSAACVTLNPCQ 159
+G + C + L + + + L
Sbjct: 61 EGAFQC-----WCEAGYELRPDRRSCKALGPEPVLLFANRIDIRQVLPHRSEYTLLLNNL 115
Query: 160 NNATC 164
NA
Sbjct: 116 ENAIA 120
>3ltf_D Protein spitz; receptor-ligand complex ectodomain cysteine rich
domain EGF ATP-binding, kinase, nucleotide-binding,
receptor; HET: NAG MAN; 3.20A {Drosophila melanogaster}
Length = 58
Score = 26.8 bits (59), Expect = 0.86
Identities = 10/41 (24%), Positives = 16/41 (39%), Gaps = 3/41 (7%)
Query: 111 DCTSNPCLNDCVCV---DDGNLSFYCNCTEDFTGEYCQFEN 148
+ CLND C + C C F G+ C+++
Sbjct: 10 TFDAWYCLNDAHCFAVKIADLPVYSCECAIGFMGQRCEYKE 50
Score = 24.5 bits (53), Expect = 5.8
Identities = 12/45 (26%), Positives = 14/45 (31%), Gaps = 4/45 (8%)
Query: 47 TDPCLGHGTC----INRSDRYQCLCTPRYSGNNCEKDNGDCSSNP 87
CL C I Y C C + G CE D + P
Sbjct: 13 AWYCLNDAHCFAVKIADLPVYSCECAIGFMGQRCEYKEIDNTYLP 57
>1nql_B Epidermal growth factor; cell surface receptor, tyrosine kinase,
glycoprotein, endoso growth factor, auto-inhibition;
HET: NAG BMA; 2.80A {Homo sapiens} SCOP: g.3.11.1 PDB:
1ivo_C* 2kv4_A 1jl9_A 1p9j_A 3njp_C*
Length = 53
Score = 26.7 bits (59), Expect = 0.86
Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 111 DCTSNPCLNDCVCVDDGNL-SFYCNCTEDFTGEYCQF 146
CL+D VC+ L + CNC + GE CQ+
Sbjct: 8 LSHDGYCLHDGVCMYIEALDKYACNCVVGYIGERCQY 44
Score = 25.6 bits (56), Expect = 2.3
Identities = 14/43 (32%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Query: 37 NGNSKVDHCLTDPCLGHGTC--INRSDRYQCLCTPRYSGNNCE 77
N +S+ CL G C I D+Y C C Y G C+
Sbjct: 1 NSDSECPLSHDGYCLHDGVCMYIEALDKYACNCVVGYIGERCQ 43
>2pe4_A Hyaluronidase-1; hyaluronan, EGF-like domain, hydrolase; HET: NAG
BMA MAN; 2.00A {Homo sapiens}
Length = 424
Score = 28.4 bits (63), Expect = 1.3
Identities = 14/81 (17%), Positives = 23/81 (28%), Gaps = 10/81 (12%)
Query: 75 NCEKDNGDCSSNPCLNDGVCV-DEVYKGRYWELP----EIRDCTSNPCLNDCVCVDDGNL 129
N CS C G CV + L I+ L+ + +
Sbjct: 331 NVTSGALLCSQALCSGHGRCVRRTSHPKALLLLNPASFSIQLTPGGGPLSLRGALSLEDQ 390
Query: 130 S-----FYCNCTEDFTGEYCQ 145
+ F C C + +C+
Sbjct: 391 AQMAVEFKCRCYPGWQAPWCE 411
>1gl4_A Nidogen-1, entactin; immunoglobulin-like domain, extracellular
matrix; HET: EPE; 2.0A {Mus musculus} SCOP: d.22.1.2
g.3.11.5 PDB: 1h4u_A
Length = 285
Score = 28.2 bits (62), Expect = 1.4
Identities = 11/68 (16%), Positives = 20/68 (29%), Gaps = 3/68 (4%)
Query: 47 TDPCLGHGTCINRSDRYQCLCTPRYSGNNCEKDNGDCSSNPCLNDGVCVDEVYKGRYWEL 106
C H C + + + C C Y+GN +P +G ++ G
Sbjct: 12 RHQCSVHAECRDYATGFCCRCVANYTGNG---RQCVAEGSPQRVNGKVKGRIFVGSSQVP 68
Query: 107 PEIRDCTS 114
+
Sbjct: 69 VVFENTDL 76
>4deq_A Neuropilin-1, vascular endothelial growth factor; coagulation
factor domain, heparin binding domain, angiogene protein
binding-cytokine complex; 2.65A {Homo sapiens} PDB:
1kmx_A 1vgh_A 2vgh_A
Length = 218
Score = 27.7 bits (61), Expect = 1.7
Identities = 10/61 (16%), Positives = 21/61 (34%), Gaps = 2/61 (3%)
Query: 28 YGICVNTNGNGNSKVDHCLTDPCLGHGTCINRSDRYQCLCTPRYSGNNCEKDNGDCSSNP 87
YG + +G+ PC + D C C+ + + + C+ + +
Sbjct: 153 YGCKITDYVDGSG--SGSPCGPCSERRKHLFVQDPQTCKCSCKNTDSRCKARQLELNERT 210
Query: 88 C 88
C
Sbjct: 211 C 211
>2ddu_A Reelin; beta-jelly-roll, signaling protein; 2.05A {Mus musculus}
Length = 387
Score = 28.1 bits (61), Expect = 1.7
Identities = 14/79 (17%), Positives = 25/79 (31%), Gaps = 11/79 (13%)
Query: 16 INECETVKDVCNYGICVNTNGNGNSKVDHCLTDPCLGHGTCINRSDRYQCLCTPRYSGNN 75
I E + K+V +G+ + C GHG CI+ C C Y+
Sbjct: 171 IQESSSQKNVPPFGLD-------GVYISEPCPSYCSGHGDCISG----VCFCDLGYTAAQ 219
Query: 76 CEKDNGDCSSNPCLNDGVC 94
+ + + +
Sbjct: 220 GTCVSNTPNHSEMFDRFEG 238
>2kl7_A Fibulin-4; secreted, calcium, disease mutation, disulfide bond,
EGF- like domain, glycoprotein, polymorphism,
structural genomics, PSI-2; NMR {Homo sapiens}
Length = 71
Score = 25.8 bits (56), Expect = 2.7
Identities = 10/24 (41%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Query: 14 SDINECETVKDVCNYGI-CVNTNG 36
SD+NEC T+ + C + C+N G
Sbjct: 1 SDVNECLTIPEACKGEMKCINHYG 24
>2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG
FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB:
2hor_A* 1lk9_A*
Length = 427
Score = 27.6 bits (61), Expect = 2.8
Identities = 11/42 (26%), Positives = 17/42 (40%), Gaps = 4/42 (9%)
Query: 49 PCLGHGTC----INRSDRYQCLCTPRYSGNNCEKDNGDCSSN 86
C HG I +C C Y+G +C + CS++
Sbjct: 19 NCSEHGRAFLDGIISEGSPKCECNTCYTGPDCSEKIQGCSAD 60
>4dur_A Plasminogen, serine protease; fibrinolysis, hydrolase; HET: NAG GAL
SIA; 2.45A {Homo sapiens} PDB: 4a5t_S* 4duu_A 2feb_A
Length = 791
Score = 27.7 bits (61), Expect = 2.8
Identities = 13/90 (14%), Positives = 18/90 (20%), Gaps = 7/90 (7%)
Query: 61 DRYQCLCTPRYSGNNCEKDNGDCSSNPCLNDGVCVDEVYKGRYWELPEIRDCTSNPCLND 120
D C C N C V +
Sbjct: 301 DENYCRNPDGKRAPWCHTTNSQVRWEYCKIPSCDSSPVSTEQLAP------TAPPELTPV 354
Query: 121 CVCVDDGNLSFY-CNCTEDFTGEYCQFENS 149
G+ Y + TG+ CQ +S
Sbjct: 355 VQDCYHGDGQSYRGTSSTTTTGKKCQSWSS 384
>3ca7_A Protein spitz; argos, EGF, developmental protein, differentiation,
EGF-like domain, endoplasmic reticulum, glycoprotein,
golgi apparatus; 1.50A {Drosophila melanogaster} PDB:
3c9a_C 3ltg_D
Length = 52
Score = 25.3 bits (55), Expect = 2.9
Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 3/35 (8%)
Query: 117 CLNDCVCV---DDGNLSFYCNCTEDFTGEYCQFEN 148
CLND C + C C F G+ C+++
Sbjct: 16 CLNDAHCFAVKIADLPVYSCECAIGFMGQRCEYKE 50
>1hae_A Heregulin-alpha; growth factor; NMR {Homo sapiens} SCOP: g.3.11.1
PDB: 1haf_A 1hre_A 1hrf_A
Length = 63
Score = 25.5 bits (55), Expect = 3.4
Identities = 9/40 (22%), Positives = 12/40 (30%), Gaps = 4/40 (10%)
Query: 110 RDCTSNPCLNDCVC----VDDGNLSFYCNCTEDFTGEYCQ 145
+ C+N C + C C FTG C
Sbjct: 7 AEKEKTFCVNGGECFMVKDLSNPSRYLCKCQPGFTGARCT 46
Score = 24.3 bits (52), Expect = 9.7
Identities = 10/38 (26%), Positives = 15/38 (39%), Gaps = 5/38 (13%)
Query: 45 CLTDPCLGHGTC-----INRSDRYQCLCTPRYSGNNCE 77
C+ G C ++ RY C C P ++G C
Sbjct: 9 KEKTFCVNGGECFMVKDLSNPSRYLCKCQPGFTGARCT 46
>1ivy_A Human protective protein; carboxypeptidase, serine
carboxypeptidase, protective protei glycoprotein,
zymogen; HET: NAG NDG; 2.20A {Homo sapiens} SCOP:
c.69.1.5
Length = 452
Score = 27.1 bits (60), Expect = 3.6
Identities = 15/122 (12%), Positives = 31/122 (25%), Gaps = 14/122 (11%)
Query: 17 NECETVKDVCNYGICVNTNGNGNSKVDHC--LTDPCLG--HGTCINRSDRYQCLCTPRYS 72
+++ C N N + + C + +N + Y S
Sbjct: 203 RLWSSLQTHCCSQNKCNFYDNKDLE---CVTNLQEVARIVGNSGLNIYNLYAPCAGGVPS 259
Query: 73 GNNCEKDNGDCSSNPCLNDGVCVDEVYKGRYWELPEIRDCTSNPCLNDCVCVDDGNLSFY 132
EKD + + + ++ + + D C + S Y
Sbjct: 260 HFRYEKDTVVVQDLGNIFTRLPLKRMWHQALLR-------SGDKVRMDPPCTNTTAASTY 312
Query: 133 CN 134
N
Sbjct: 313 LN 314
>3tbd_A Netrin-G2, laminet-2; laminin N-terminal domain, domain VI,
LE-domain, N neuronal cell adhesion molecule, netrin G
ligand 2, nervous system; HET: NAG; 1.80A {Homo sapiens}
PDB: 3zyg_A* 3zyi_B*
Length = 338
Score = 26.8 bits (58), Expect = 4.9
Identities = 11/42 (26%), Positives = 15/42 (35%), Gaps = 1/42 (2%)
Query: 38 GNSKVDHCLTDPCLGHG-TCINRSDRYQCLCTPRYSGNNCEK 78
S ++ C H C R QC C +G +C K
Sbjct: 260 AISNIEVIGRCKCNLHANLCSMREGSLQCECEHNTTGPDCGK 301
>3p5b_L Low density lipoprotein receptor variant; B-propellor,
convertase, hydrolase-lipid binding P complex; 3.30A
{Homo sapiens} PDB: 3p5c_L
Length = 400
Score = 26.3 bits (57), Expect = 6.3
Identities = 9/52 (17%), Positives = 16/52 (30%), Gaps = 3/52 (5%)
Query: 43 DHCLTDPCLGHGTCINRSDRYQCLCTPRYSGNNCEKDNGDCSSNPCLNDGVC 94
+ CL + C + Y+CLC + + C + C
Sbjct: 1 NECLDNNGGCSHVCNDLKIGYECLCPDGF---QLVAQRRCEDIDECQDPDTC 49
>3v4v_B Integrin beta-7; cell adhesion, madcam-1, membrane; HET: NAG BMA
MAN 0DU; 3.10A {Homo sapiens} PDB: 3v4p_B*
Length = 503
Score = 26.4 bits (57), Expect = 7.0
Identities = 8/34 (23%), Positives = 9/34 (26%), Gaps = 4/34 (11%)
Query: 50 CLGHGTCINRSDRYQCLCTPRYSGNNCEKDNGDC 83
G G C C P G CE +
Sbjct: 470 SDGQGHLQCG----VCSCAPGRLGRLCESRGLEN 499
>3f1s_B Vitamin K-dependent protein Z; PZ, ZPI, complex, serpin, protease
inhibitor, protease, GLYC secreted, serine protease
inhibitor, blood coagulation; HET: FLC NAG; 2.30A {Homo
sapiens}
Length = 283
Score = 25.8 bits (57), Expect = 7.9
Identities = 10/66 (15%), Positives = 14/66 (21%), Gaps = 2/66 (3%)
Query: 38 GNSKVDHCLTDPCLGHGTCINRSDRYQCLCTPRYSGNNCEKDNGDCSSNPCLNDGVCVDE 97
++ TD C C+ + Y C C Y K C
Sbjct: 1 AKNECHPERTDGC--QHFCLPGQESYTCSCAQGYRLGEDHKQCVPHDQCACGVLTSEKRA 58
Query: 98 VYKGRY 103
Sbjct: 59 PDLQDL 64
>3g5c_A ADAM 22; alpha/beta fold, cross-linked domain, cell adhesion,
cleavag of basic residues, EGF-like domain,
glycoprotein, membrane, phosphoprotein; HET: NAG; 2.36A
{Homo sapiens}
Length = 510
Score = 25.9 bits (56), Expect = 8.2
Identities = 12/64 (18%), Positives = 21/64 (32%), Gaps = 4/64 (6%)
Query: 25 VCNYGICVNTNGNGNSK-VDHCLTDPCLGHGTCINRSDRYQCLCTPRYSGNNCEKDNGDC 83
+C C+ S + C G+G C N +C+C + G++C
Sbjct: 430 MCLEHRCLPVASFNFSTCLSSKEGTICSGNGVCSNEL---KCVCNRHWIGSDCNTYFPHN 486
Query: 84 SSNP 87
Sbjct: 487 DDAK 490
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex,
beta propeller, cholesterol clearance, PCSK
autocatalytic cleavage; 7.01A {Homo sapiens}
Length = 791
Score = 26.0 bits (56), Expect = 9.8
Identities = 16/128 (12%), Positives = 31/128 (24%)
Query: 50 CLGHGTCINRSDRYQCLCTPRYSGNNCEKDNGDCSSNPCLNDGVCVDEVYKGRYWELPEI 109
C C + SD C +N + C+ + +C D +I
Sbjct: 293 CNMARDCRDWSDEPIKECGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDI 352
Query: 110 RDCTSNPCLNDCVCVDDGNLSFYCNCTEDFTGEYCQFENSAACVTLNPCQNNATCVASPG 169
+C + +G C + + L + +
Sbjct: 353 DECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLD 412
Query: 170 EKQITCLC 177
+ T L
Sbjct: 413 RSEYTSLI 420
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.137 0.475
Gapped
Lambda K H
0.267 0.0548 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,702,972
Number of extensions: 156162
Number of successful extensions: 1337
Number of sequences better than 10.0: 1
Number of HSP's gapped: 718
Number of HSP's successfully gapped: 375
Length of query: 181
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 93
Effective length of database: 4,244,745
Effective search space: 394761285
Effective search space used: 394761285
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.0 bits)