BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy969
(106 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q19264|DEOC_CAEEL Putative deoxyribose-phosphate aldolase OS=Caenorhabditis elegans
GN=F09E5.3 PE=3 SV=1
Length = 303
Score = 83.6 bits (205), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 38/75 (50%), Positives = 55/75 (73%)
Query: 29 NVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLF 88
N +MC+AIK +H+L+GKK+G KPAGGI T ++++ ++ LV +LG +WLN LF
Sbjct: 229 NATLEVAYVMCTAIKRWHELTGKKVGFKPAGGIKTVDEALSYVALVKDILGDEWLNPHLF 288
Query: 89 RIGASSLLNNILQEL 103
RIGASSLL++ L+ L
Sbjct: 289 RIGASSLLDDCLKGL 303
>sp|Q91YP3|DEOC_MOUSE Putative deoxyribose-phosphate aldolase OS=Mus musculus GN=Dera
PE=2 SV=1
Length = 318
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 42/99 (42%), Positives = 58/99 (58%), Gaps = 4/99 (4%)
Query: 9 FKGSNFRTLHGRGPDSTSYG----NVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTF 64
+K S + G TS G N I+M AI+ F +G K+G KPAGGI T
Sbjct: 203 YKASLVAMMAGSDFIKTSTGKETVNATFPVAIVMLRAIRDFFWKTGNKVGFKPAGGIRTA 262
Query: 65 EDSVRWIYLVLIMLGPDWLNKDLFRIGASSLLNNILQEL 103
++S+ W+ LV LG +WL DLFRIGASSLL++I +++
Sbjct: 263 KESLAWLSLVKEELGDEWLTPDLFRIGASSLLSDIERQI 301
>sp|Q9Y315|DEOC_HUMAN Putative deoxyribose-phosphate aldolase OS=Homo sapiens GN=DERA
PE=1 SV=2
Length = 318
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 41/99 (41%), Positives = 58/99 (58%), Gaps = 4/99 (4%)
Query: 9 FKGSNFRTLHGRGPDSTSYG----NVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTF 64
+K S + G TS G N I+M AI+ F +G KIG KPAGGI +
Sbjct: 203 YKASMIAMMAGSDFIKTSTGKETVNATFPVAIVMLRAIRDFFWKTGNKIGFKPAGGIRSA 262
Query: 65 EDSVRWIYLVLIMLGPDWLNKDLFRIGASSLLNNILQEL 103
+DS+ W+ LV LG +WL +LFRIGAS+LL++I +++
Sbjct: 263 KDSLAWLSLVKEELGDEWLKPELFRIGASTLLSDIERQI 301
>sp|Q3T0V9|DEOC_BOVIN Putative deoxyribose-phosphate aldolase OS=Bos taurus GN=DERA PE=2
SV=1
Length = 318
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 38/99 (38%), Positives = 57/99 (57%), Gaps = 4/99 (4%)
Query: 9 FKGSNFRTLHGRGPDSTSYG----NVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTF 64
+K S + G TS G N I+M AI+ F +G K+G KPAGGI +
Sbjct: 203 YKASMIAMMAGSDFIKTSTGKETVNATFPVAIVMLRAIRDFFWKTGNKVGFKPAGGIRSA 262
Query: 65 EDSVRWIYLVLIMLGPDWLNKDLFRIGASSLLNNILQEL 103
+DS+ W+ L+ LG +W+ +LFRIGAS+LL +I +++
Sbjct: 263 KDSLVWLSLIKEELGDEWMKPELFRIGASTLLADIERQI 301
>sp|Q8UJ09|DEOC_AGRT5 Deoxyribose-phosphate aldolase OS=Agrobacterium tumefaciens (strain
C58 / ATCC 33970) GN=deoC PE=3 SV=1
Length = 259
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 48/98 (48%), Gaps = 8/98 (8%)
Query: 10 KGSNFRTLHGRGPDSTSYGNVCNTCGI----IMCSAIKHFHKLSGKKIGLKPAGGISTFE 65
+ S G TS G V + IM AI+ S KK+G KPAGGI T E
Sbjct: 154 RASEIAIAEGADFIKTSTGKVAVNATLEAADIMLQAIRD----SKKKVGFKPAGGIGTVE 209
Query: 66 DSVRWIYLVLIMLGPDWLNKDLFRIGASSLLNNILQEL 103
D+ ++ L ++ P+W FR GAS +L+++L L
Sbjct: 210 DATLYLRLAETIMAPNWAMPSTFRFGASGVLDDVLNVL 247
>sp|B4EWA4|DEOC_PROMH Deoxyribose-phosphate aldolase OS=Proteus mirabilis (strain HI4320)
GN=deoC PE=3 SV=1
Length = 259
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 38/54 (70%)
Query: 50 GKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGASSLLNNILQEL 103
GK++G KPAGG+ T E++ +++ L ++G +W++ FR GASSLL N+L L
Sbjct: 195 GKEVGFKPAGGVRTAEEAAQYLALANRIMGDNWVDARHFRFGASSLLGNLLATL 248
>sp|C5BHJ2|DEOC_EDWI9 Deoxyribose-phosphate aldolase OS=Edwardsiella ictaluri (strain
93-146) GN=deoC PE=3 SV=1
Length = 259
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 51/94 (54%), Gaps = 8/94 (8%)
Query: 11 GSNF-RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVR 69
G++F +T G+ P N +M S I+ K++G KPAGG+ T ED+ +
Sbjct: 162 GADFIKTSTGKVP-----VNATLESAELMMSVIRDMG--VAKRVGFKPAGGVRTAEDAAQ 214
Query: 70 WIYLVLIMLGPDWLNKDLFRIGASSLLNNILQEL 103
++ L +LG W + FR GASSLL ++LQ L
Sbjct: 215 YLALADRLLGEGWADSRHFRFGASSLLASLLQTL 248
>sp|Q6LUH4|DEOC_PHOPR Deoxyribose-phosphate aldolase OS=Photobacterium profundum GN=deoC
PE=3 SV=1
Length = 257
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 49/94 (52%), Gaps = 8/94 (8%)
Query: 11 GSNF-RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVR 69
G++F +T G+ P N IM + IK K +G KPAGG+ T ED+
Sbjct: 160 GADFIKTSTGKVP-----VNATPEAAEIMLTVIKDMD--VAKTVGFKPAGGVRTAEDAQA 212
Query: 70 WIYLVLIMLGPDWLNKDLFRIGASSLLNNILQEL 103
++ + +LG DW + +R GASSLL N+L L
Sbjct: 213 FLAMADRILGGDWADNMHYRFGASSLLANLLHTL 246
>sp|B2VH50|DEOC_ERWT9 Deoxyribose-phosphate aldolase OS=Erwinia tasmaniensis (strain DSM
17950 / Et1/99) GN=deoC PE=3 SV=1
Length = 259
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 35/50 (70%)
Query: 51 KKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGASSLLNNIL 100
K++G KPAGG+ + +D+ ++ L +LGPDW + FR GASSLL ++L
Sbjct: 196 KQVGFKPAGGVRSADDAALYLKLADNILGPDWADARHFRFGASSLLASLL 245
>sp|A8H728|DEOC_SHEPA Deoxyribose-phosphate aldolase OS=Shewanella pealeana (strain ATCC
700345 / ANG-SQ1) GN=deoC PE=3 SV=1
Length = 257
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 32/53 (60%)
Query: 52 KIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGASSLLNNILQELE 104
K+G KPAGG+ E + ++ + +LG DW FR GASSLL N+L LE
Sbjct: 194 KVGFKPAGGVKDAEAAAEFLGVAARLLGDDWATPATFRFGASSLLTNLLHTLE 246
>sp|Q086G0|DEOC_SHEFN Deoxyribose-phosphate aldolase OS=Shewanella frigidimarina (strain
NCIMB 400) GN=deoC PE=3 SV=1
Length = 257
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 33/54 (61%)
Query: 51 KKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGASSLLNNILQELE 104
+ +G KPAGG+ + ++ L +LG DW+ FR GASSLLN++L LE
Sbjct: 193 RNVGFKPAGGVRDAAQTAEFLDLAARILGDDWVTPQTFRFGASSLLNSLLHTLE 246
>sp|A4W698|DEOC_ENT38 Deoxyribose-phosphate aldolase OS=Enterobacter sp. (strain 638)
GN=deoC PE=3 SV=1
Length = 259
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 35/53 (66%)
Query: 51 KKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGASSLLNNILQEL 103
K +G KPAGG+ T ED+ +++ + + G DW + +R GASSLL ++L+ L
Sbjct: 196 KTVGFKPAGGVRTAEDAQQFLAIADDLFGADWADSRHYRFGASSLLASLLKTL 248
>sp|Q8EHK4|DEOC_SHEON Deoxyribose-phosphate aldolase OS=Shewanella oneidensis (strain
MR-1) GN=deoC PE=3 SV=1
Length = 256
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 34/53 (64%)
Query: 52 KIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGASSLLNNILQELE 104
K+G KPAGG+ + ++ + +LG DW++ FR GASSLLN++L LE
Sbjct: 193 KVGFKPAGGVRDAAQAAEFLGVAERILGADWVSPRTFRFGASSLLNSLLHTLE 245
>sp|Q0HLF0|DEOC_SHESM Deoxyribose-phosphate aldolase OS=Shewanella sp. (strain MR-4)
GN=deoC PE=3 SV=1
Length = 256
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 34/53 (64%)
Query: 52 KIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGASSLLNNILQELE 104
K+G KPAGG+ + ++ + +LG DW++ FR GASSLLN++L LE
Sbjct: 193 KVGFKPAGGVRDAAQAAEFLGVAERILGADWVSPRTFRFGASSLLNSLLHTLE 245
>sp|Q0HXQ4|DEOC_SHESR Deoxyribose-phosphate aldolase OS=Shewanella sp. (strain MR-7)
GN=deoC PE=3 SV=1
Length = 256
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 34/53 (64%)
Query: 52 KIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGASSLLNNILQELE 104
K+G KPAGG+ + ++ + +LG DW++ FR GASSLLN++L LE
Sbjct: 193 KVGFKPAGGVRDAAQAAEFLGVAERILGADWVSPRTFRFGASSLLNSLLHTLE 245
>sp|A0KU07|DEOC_SHESA Deoxyribose-phosphate aldolase OS=Shewanella sp. (strain ANA-3)
GN=deoC PE=3 SV=1
Length = 256
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 34/53 (64%)
Query: 52 KIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGASSLLNNILQELE 104
K+G KPAGG+ + ++ + +LG DW++ FR GASSLLN++L LE
Sbjct: 193 KVGFKPAGGVRDAAQAAEFLGVAERILGADWVSPRTFRFGASSLLNSLLHTLE 245
>sp|A3N123|DEOC_ACTP2 Deoxyribose-phosphate aldolase OS=Actinobacillus pleuropneumoniae
serotype 5b (strain L20) GN=deoC PE=3 SV=1
Length = 258
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 2/58 (3%)
Query: 37 IMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGASS 94
IM I+ + ++G K AGG+ T E++ +++ L +LG DW+N D FR GASS
Sbjct: 183 IMLETIRDLN--VADRVGFKAAGGVKTAEEAAQYLALAQEILGHDWVNSDHFRFGASS 238
>sp|B3H1P7|DEOC_ACTP7 Deoxyribose-phosphate aldolase OS=Actinobacillus pleuropneumoniae
serotype 7 (strain AP76) GN=deoC PE=3 SV=1
Length = 258
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 2/58 (3%)
Query: 37 IMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGASS 94
IM I+ + ++G K AGG+ T E++ +++ L +LG DW+N D FR GASS
Sbjct: 183 IMLETIRDLN--VADRVGFKAAGGVKTAEEAAQYLALAQEILGHDWVNSDHFRFGASS 238
>sp|B8CKI4|DEOC_SHEPW Deoxyribose-phosphate aldolase OS=Shewanella piezotolerans (strain
WP3 / JCM 13877) GN=deoC PE=3 SV=1
Length = 257
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 37/80 (46%)
Query: 25 TSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLN 84
TS G V + + K+G KPAGG+ + ++ + +LG DW
Sbjct: 167 TSTGKVAVNATLEAAEIMMTVISEKNTKVGFKPAGGVKDAAAAAEFLGVAARLLGDDWAT 226
Query: 85 KDLFRIGASSLLNNILQELE 104
FR GASSLL N+L LE
Sbjct: 227 PATFRFGASSLLTNLLHTLE 246
>sp|B0TQ91|DEOC_SHEHH Deoxyribose-phosphate aldolase OS=Shewanella halifaxensis (strain
HAW-EB4) GN=deoC PE=3 SV=1
Length = 257
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 31/53 (58%)
Query: 52 KIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGASSLLNNILQELE 104
K+G KPAGG+ + ++ + +LG DW FR GASSLL N+L LE
Sbjct: 194 KVGFKPAGGVKDAAAAAEFLGVAARLLGDDWATPATFRFGASSLLTNLLHTLE 246
>sp|B0BPV4|DEOC_ACTPJ Deoxyribose-phosphate aldolase OS=Actinobacillus pleuropneumoniae
serotype 3 (strain JL03) GN=deoC PE=3 SV=1
Length = 258
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Query: 37 IMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGASS 94
IM I+ ++G K AGG+ T E++ +++ L +LG DW+N D FR GASS
Sbjct: 183 IMLETIRDLK--VADRVGFKAAGGVKTAEEAAQYLALAQEILGHDWVNSDHFRFGASS 238
>sp|A1RH87|DEOC_SHESW Deoxyribose-phosphate aldolase OS=Shewanella sp. (strain W3-18-1)
GN=deoC PE=3 SV=1
Length = 256
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 34/53 (64%)
Query: 52 KIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGASSLLNNILQELE 104
++G KPAGG+ + ++ + +LG DW++ FR GASSLLN++L LE
Sbjct: 193 QVGFKPAGGVRDAAQAAEFLGVAERILGADWVSPRTFRFGASSLLNSLLHTLE 245
>sp|A4Y9A8|DEOC_SHEPC Deoxyribose-phosphate aldolase OS=Shewanella putrefaciens (strain
CN-32 / ATCC BAA-453) GN=deoC PE=3 SV=1
Length = 256
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 34/53 (64%)
Query: 52 KIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGASSLLNNILQELE 104
++G KPAGG+ + ++ + +LG DW++ FR GASSLLN++L LE
Sbjct: 193 QVGFKPAGGVRDAAQAAEFLGVAERILGADWVSPRTFRFGASSLLNSLLHTLE 245
>sp|A3D7J4|DEOC_SHEB5 Deoxyribose-phosphate aldolase OS=Shewanella baltica (strain OS155
/ ATCC BAA-1091) GN=deoC PE=3 SV=1
Length = 256
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 34/53 (64%)
Query: 52 KIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGASSLLNNILQELE 104
++G KPAGG+ + ++ + +LG DW++ FR GASSLLN++L LE
Sbjct: 193 QVGFKPAGGVRDAAQAAEFLGVAERILGADWVSPRTFRFGASSLLNSLLHTLE 245
>sp|A9KZ80|DEOC_SHEB9 Deoxyribose-phosphate aldolase OS=Shewanella baltica (strain OS195)
GN=deoC PE=3 SV=1
Length = 256
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 34/53 (64%)
Query: 52 KIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGASSLLNNILQELE 104
++G KPAGG+ + ++ + +LG DW++ FR GASSLLN++L LE
Sbjct: 193 QVGFKPAGGVRDAAQAAEFLGVAERILGADWVSPRTFRFGASSLLNSLLHTLE 245
>sp|A6WRB8|DEOC_SHEB8 Deoxyribose-phosphate aldolase OS=Shewanella baltica (strain OS185)
GN=deoC PE=3 SV=1
Length = 256
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 34/53 (64%)
Query: 52 KIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGASSLLNNILQELE 104
++G KPAGG+ + ++ + +LG DW++ FR GASSLLN++L LE
Sbjct: 193 QVGFKPAGGVRDAAQAAEFLGVAERILGADWVSPRTFRFGASSLLNSLLHTLE 245
>sp|B8E6P4|DEOC_SHEB2 Deoxyribose-phosphate aldolase OS=Shewanella baltica (strain OS223)
GN=deoC PE=3 SV=1
Length = 256
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 34/53 (64%)
Query: 52 KIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGASSLLNNILQELE 104
++G KPAGG+ + ++ + +LG DW++ FR GASSLLN++L LE
Sbjct: 193 QVGFKPAGGVRDAAQAAEFLGVAERILGADWVSPRTFRFGASSLLNSLLHTLE 245
>sp|Q7VMS9|DEOC_HAEDU Deoxyribose-phosphate aldolase OS=Haemophilus ducreyi (strain
35000HP / ATCC 700724) GN=deoC PE=3 SV=1
Length = 258
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 2/58 (3%)
Query: 37 IMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGASS 94
IM I+ + +K+G K AGG+ T E++ +++ L +LG DW+N FR GASS
Sbjct: 183 IMLETIRDLN--VAEKVGFKAAGGVKTTEEAEQYLALAKTILGEDWVNSAHFRFGASS 238
>sp|B1KRP8|DEOC_SHEWM Deoxyribose-phosphate aldolase OS=Shewanella woodyi (strain ATCC
51908 / MS32) GN=deoC PE=3 SV=1
Length = 257
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 31/53 (58%)
Query: 52 KIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGASSLLNNILQELE 104
K+G KPAGG+ + ++ L +LG DW FR GASSLL N+L LE
Sbjct: 194 KVGFKPAGGVRDAAAAGEFLGLAARLLGDDWATPATFRFGASSLLVNLLHTLE 246
>sp|A3QGT3|DEOC_SHELP Deoxyribose-phosphate aldolase OS=Shewanella loihica (strain ATCC
BAA-1088 / PV-4) GN=deoC PE=3 SV=1
Length = 257
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 31/53 (58%)
Query: 52 KIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGASSLLNNILQELE 104
K+G KPAGG+ + ++ + +LG W FR GASSLLNN+L LE
Sbjct: 194 KVGFKPAGGVRDAAAAEEFLGVAERLLGKGWATPRTFRFGASSLLNNLLHTLE 246
>sp|B8F671|DEOC_HAEPS Deoxyribose-phosphate aldolase OS=Haemophilus parasuis serovar 5
(strain SH0165) GN=deoC PE=3 SV=1
Length = 259
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 29/42 (69%)
Query: 53 IGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGASS 94
+G K AGG+ T E++ +++ L +LG DW+N+ FR GASS
Sbjct: 197 VGFKAAGGVKTTEEAEQYLALTAEILGQDWINQAHFRFGASS 238
>sp|A8FYQ9|DEOC_SHESH Deoxyribose-phosphate aldolase OS=Shewanella sediminis (strain
HAW-EB3) GN=deoC PE=3 SV=1
Length = 257
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 31/53 (58%)
Query: 52 KIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGASSLLNNILQELE 104
K+G KPAGG+ + ++ L +LG +W FR GASSLL N+L LE
Sbjct: 194 KVGFKPAGGVRDAAAAGEFLGLAARLLGDEWATPRTFRFGASSLLINLLHTLE 246
>sp|Q7N932|DEOC_PHOLL Deoxyribose-phosphate aldolase OS=Photorhabdus luminescens subsp.
laumondii (strain TT01) GN=deoC PE=3 SV=1
Length = 259
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 35/54 (64%), Gaps = 1/54 (1%)
Query: 42 IKHFHKLS-GKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGASS 94
+K H++ G+ +G KPAGG+ T E++ +++ L ++G W++ FR GASS
Sbjct: 186 MKVIHEMGVGETVGFKPAGGVRTAEEAAQYLALADHIMGDKWVDARHFRFGASS 239
>sp|A7MGB0|DEOC_CROS8 Deoxyribose-phosphate aldolase OS=Cronobacter sakazakii (strain
ATCC BAA-894) GN=deoC PE=3 SV=1
Length = 259
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 26/42 (61%)
Query: 50 GKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIG 91
K +G KPAGG+ T ED+ +++ + +LG DW + +R G
Sbjct: 195 AKTVGFKPAGGVRTAEDAAKYLAVADELLGADWADARHYRFG 236
>sp|C3LQC2|DEOC_VIBCM Deoxyribose-phosphate aldolase OS=Vibrio cholerae serotype O1
(strain M66-2) GN=deoC PE=3 SV=1
Length = 259
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 27/43 (62%)
Query: 50 GKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGA 92
K +G KPAGG+ T ED+ +++ + +LG DW + +R GA
Sbjct: 194 AKTVGFKPAGGVRTAEDAQQYLAMADEILGGDWADSRHYRFGA 236
>sp|Q9KPL7|DEOC_VIBCH Deoxyribose-phosphate aldolase OS=Vibrio cholerae serotype O1
(strain ATCC 39315 / El Tor Inaba N16961) GN=deoC PE=3
SV=1
Length = 259
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 27/43 (62%)
Query: 50 GKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGA 92
K +G KPAGG+ T ED+ +++ + +LG DW + +R GA
Sbjct: 194 AKTVGFKPAGGVRTAEDAQQYLAMADEILGGDWADSRHYRFGA 236
>sp|A5F5S6|DEOC_VIBC3 Deoxyribose-phosphate aldolase OS=Vibrio cholerae serotype O1
(strain ATCC 39541 / Ogawa 395 / O395) GN=deoC PE=3 SV=1
Length = 259
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 27/43 (62%)
Query: 50 GKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGA 92
K +G KPAGG+ T ED+ +++ + +LG DW + +R GA
Sbjct: 194 AKTVGFKPAGGVRTAEDAQQYLAMADEILGGDWADSRHYRFGA 236
>sp|B5FA98|DEOC_VIBFM Deoxyribose-phosphate aldolase OS=Vibrio fischeri (strain MJ11)
GN=deoC PE=3 SV=1
Length = 258
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 8/83 (9%)
Query: 11 GSNF-RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVR 69
G+NF +T G+ P N +M I+ K +G KPAGG+ T ED+
Sbjct: 160 GANFIKTSTGKVP-----VNATPEYARMMLEVIRDMD--VAKTVGFKPAGGVRTAEDAQA 212
Query: 70 WIYLVLIMLGPDWLNKDLFRIGA 92
++ + +LG DW + +R GA
Sbjct: 213 YLAMADEILGDDWADNMHYRFGA 235
>sp|Q66EW0|DEOC2_YERPS Deoxyribose-phosphate aldolase 2 OS=Yersinia pseudotuberculosis
serotype I (strain IP32953) GN=deoC2 PE=3 SV=1
Length = 265
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 26/42 (61%)
Query: 50 GKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIG 91
G+ +G KPAGG+ T ED+ +++ L ++G W + FR G
Sbjct: 201 GETVGFKPAGGVRTAEDAAQFLQLADQLMGEGWADARHFRFG 242
>sp|Q8ZIQ4|DEOC2_YERPE Deoxyribose-phosphate aldolase 2 OS=Yersinia pestis GN=deoC2 PE=3
SV=1
Length = 265
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 26/42 (61%)
Query: 50 GKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIG 91
G+ +G KPAGG+ T ED+ +++ L ++G W + FR G
Sbjct: 201 GETVGFKPAGGVRTAEDAAQFLQLADQLMGEGWADARHFRFG 242
>sp|Q5E7J7|DEOC_VIBF1 Deoxyribose-phosphate aldolase OS=Vibrio fischeri (strain ATCC
700601 / ES114) GN=deoC PE=3 SV=1
Length = 258
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 8/83 (9%)
Query: 11 GSNF-RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVR 69
G+NF +T G+ P N +M I+ K +G KPAGG+ T ED+
Sbjct: 160 GANFIKTSTGKVP-----VNATPEYARMMLEVIRDMD--VAKTVGFKPAGGVRTAEDAQA 212
Query: 70 WIYLVLIMLGPDWLNKDLFRIGA 92
++ + +LG DW + +R GA
Sbjct: 213 YLAMADDILGGDWADNMHYRFGA 235
>sp|Q7MI38|DEOC2_VIBVY Deoxyribose-phosphate aldolase 2 OS=Vibrio vulnificus (strain
YJ016) GN=deoC2 PE=3 SV=1
Length = 258
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 27/43 (62%)
Query: 50 GKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGA 92
+K+G KPAGG+ T ED+ ++ + +LG +W + +R GA
Sbjct: 193 AEKVGFKPAGGVRTAEDAAAYLAMADDILGSEWADNMHYRFGA 235
>sp|A8G9H6|DEOC_SERP5 Deoxyribose-phosphate aldolase OS=Serratia proteamaculans (strain
568) GN=deoC PE=3 SV=1
Length = 259
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 25/42 (59%)
Query: 50 GKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIG 91
K +G KPAGG+ T ED++ ++ L +LG W + FR G
Sbjct: 195 AKTVGFKPAGGVRTAEDALHYLQLADRILGEGWADARHFRFG 236
>sp|Q8DBT2|DEOC_VIBVU Deoxyribose-phosphate aldolase OS=Vibrio vulnificus (strain CMCP6)
GN=deoC PE=3 SV=1
Length = 258
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 27/43 (62%)
Query: 50 GKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGA 92
+K+G KPAGG+ T ED+ ++ + +LG +W + +R GA
Sbjct: 193 AEKVGFKPAGGVRTAEDAAAYLAMADDILGSEWADNMHYRFGA 235
>sp|B6ENG3|DEOC_ALISL Deoxyribose-phosphate aldolase OS=Aliivibrio salmonicida (strain
LFI1238) GN=deoC PE=3 SV=1
Length = 258
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 26/43 (60%)
Query: 50 GKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGA 92
K +G KPAGG+ T ED+ ++ + +LG DW + +R GA
Sbjct: 193 AKTVGFKPAGGVRTAEDAQAYLAMADDILGGDWADNMHYRFGA 235
>sp|B7LXU3|DEOC_ECO8A Deoxyribose-phosphate aldolase OS=Escherichia coli O8 (strain IAI1)
GN=deoC PE=3 SV=1
Length = 259
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 25/41 (60%)
Query: 51 KKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIG 91
K +G KPAGG+ T ED+ +++ + + G DW + +R G
Sbjct: 196 KTVGFKPAGGVRTAEDAQKYLAIADELFGADWADARHYRFG 236
>sp|Q3YU12|DEOC_SHISS Deoxyribose-phosphate aldolase OS=Shigella sonnei (strain Ss046)
GN=deoC PE=3 SV=1
Length = 259
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 25/41 (60%)
Query: 51 KKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIG 91
K +G KPAGG+ T ED+ +++ + + G DW + +R G
Sbjct: 196 KTVGFKPAGGVRTAEDAQKYLAIADELFGADWADARHYRFG 236
>sp|Q327L5|DEOC_SHIDS Deoxyribose-phosphate aldolase OS=Shigella dysenteriae serotype 1
(strain Sd197) GN=deoC PE=3 SV=1
Length = 259
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 25/41 (60%)
Query: 51 KKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIG 91
K +G KPAGG+ T ED+ +++ + + G DW + +R G
Sbjct: 196 KTVGFKPAGGVRTAEDAQKYLAIADELFGADWADARHYRFG 236
>sp|B7LNS1|DEOC_ESCF3 Deoxyribose-phosphate aldolase OS=Escherichia fergusonii (strain
ATCC 35469 / DSM 13698 / CDC 0568-73) GN=deoC PE=3 SV=1
Length = 259
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 25/41 (60%)
Query: 51 KKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIG 91
K +G KPAGG+ T ED+ +++ + + G DW + +R G
Sbjct: 196 KTVGFKPAGGVRTAEDAQKYLAIADELFGADWADARHYRFG 236
>sp|B6I6M8|DEOC_ECOSE Deoxyribose-phosphate aldolase OS=Escherichia coli (strain SE11)
GN=deoC PE=3 SV=1
Length = 259
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 25/41 (60%)
Query: 51 KKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIG 91
K +G KPAGG+ T ED+ +++ + + G DW + +R G
Sbjct: 196 KTVGFKPAGGVRTAEDAQKYLAIADELFGADWADARHYRFG 236
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.141 0.443
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,668,772
Number of Sequences: 539616
Number of extensions: 1563539
Number of successful extensions: 3053
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 2951
Number of HSP's gapped (non-prelim): 103
length of query: 106
length of database: 191,569,459
effective HSP length: 75
effective length of query: 31
effective length of database: 151,098,259
effective search space: 4684046029
effective search space used: 4684046029
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)