Query psy969
Match_columns 106
No_of_seqs 107 out of 1006
Neff 4.6
Searched_HMMs 46136
Date Fri Aug 16 17:06:46 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy969.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/969hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK05283 deoxyribose-phosphate 100.0 3.5E-35 7.5E-40 232.0 9.8 96 3-105 152-248 (257)
2 KOG3981|consensus 99.9 6.3E-28 1.4E-32 192.5 6.9 97 3-104 213-310 (326)
3 COG0274 DeoC Deoxyribose-phosp 99.9 5.8E-27 1.3E-31 183.0 6.5 75 3-101 145-220 (228)
4 TIGR00126 deoC deoxyribose-pho 99.9 6.8E-24 1.5E-28 162.9 6.2 73 3-99 137-210 (211)
5 PRK00507 deoxyribose-phosphate 99.9 4.4E-23 9.5E-28 159.1 8.1 75 3-101 141-216 (221)
6 cd00959 DeoC 2-deoxyribose-5-p 99.8 2.7E-21 5.9E-26 145.2 6.6 67 3-93 136-203 (203)
7 PF01791 DeoC: DeoC/LacD famil 99.7 6E-17 1.3E-21 123.3 5.3 78 3-100 151-235 (236)
8 PRK07226 fructose-bisphosphate 98.6 1.4E-07 3E-12 73.7 6.8 69 3-100 165-236 (267)
9 TIGR01949 AroFGH_arch predicte 98.1 7.8E-06 1.7E-10 63.4 5.5 57 4-80 162-221 (258)
10 cd00945 Aldolase_Class_I Class 97.8 0.00013 2.8E-09 51.9 7.1 61 4-81 135-196 (201)
11 cd04738 DHOD_2_like Dihydrooro 97.5 0.00025 5.5E-09 57.0 5.5 35 42-81 270-304 (327)
12 PRK05286 dihydroorotate dehydr 97.1 0.0017 3.7E-08 52.7 6.3 73 4-81 231-313 (344)
13 cd00958 DhnA Class I fructose- 97.0 0.0034 7.3E-08 47.4 7.0 58 4-81 149-209 (235)
14 cd02810 DHOD_DHPD_FMN Dihydroo 96.6 0.0087 1.9E-07 46.4 6.7 35 42-81 233-267 (289)
15 cd02940 DHPD_FMN Dihydropyrimi 96.1 0.035 7.7E-07 44.0 7.7 35 42-81 242-276 (299)
16 PRK05848 nicotinate-nucleotide 95.9 0.032 6.8E-07 44.8 6.7 64 5-96 196-260 (273)
17 PTZ00314 inosine-5'-monophosph 95.7 0.035 7.5E-07 47.6 6.6 73 4-87 296-374 (495)
18 cd02809 alpha_hydroxyacid_oxid 95.5 0.079 1.7E-06 42.0 7.6 64 4-81 186-251 (299)
19 cd04739 DHOD_like Dihydroorota 95.4 0.095 2.1E-06 42.3 7.9 25 52-81 237-261 (325)
20 PF04131 NanE: Putative N-acet 95.3 0.11 2.3E-06 40.4 7.6 68 5-93 106-175 (192)
21 TIGR01036 pyrD_sub2 dihydrooro 95.3 0.081 1.8E-06 43.1 7.1 38 39-81 275-312 (335)
22 PF01180 DHO_dh: Dihydroorotat 95.2 0.056 1.2E-06 42.4 5.8 40 37-81 229-268 (295)
23 cd04741 DHOD_1A_like Dihydroor 95.1 0.052 1.1E-06 43.1 5.5 61 40-105 231-292 (294)
24 PRK07565 dihydroorotate dehydr 95.1 0.11 2.5E-06 41.7 7.4 35 40-81 229-263 (334)
25 cd00452 KDPG_aldolase KDPG and 95.1 0.082 1.8E-06 39.1 6.1 64 5-97 111-175 (190)
26 cd03332 LMO_FMN L-Lactate 2-mo 95.0 0.088 1.9E-06 44.2 6.7 66 4-83 267-334 (383)
27 cd02803 OYE_like_FMN_family Ol 94.9 0.11 2.4E-06 40.8 6.8 63 4-72 234-301 (327)
28 PRK07107 inosine 5-monophospha 94.9 0.12 2.6E-06 44.6 7.4 76 3-83 297-378 (502)
29 PLN02826 dihydroorotate dehydr 94.8 0.17 3.7E-06 42.7 8.0 36 41-81 330-365 (409)
30 PRK06843 inosine 5-monophospha 94.7 0.1 2.3E-06 44.1 6.3 71 4-87 208-286 (404)
31 cd04736 MDH_FMN Mandelate dehy 94.6 0.12 2.6E-06 43.1 6.4 64 4-83 250-315 (361)
32 TIGR03128 RuMP_HxlA 3-hexulose 94.3 0.27 5.9E-06 36.1 7.3 61 5-81 120-181 (206)
33 PLN02535 glycolate oxidase 94.3 0.19 4.1E-06 42.0 7.0 64 4-81 237-302 (364)
34 PLN02274 inosine-5'-monophosph 94.3 0.14 3.1E-06 44.1 6.5 70 4-84 303-378 (505)
35 COG0167 PyrD Dihydroorotate de 94.3 0.13 2.8E-06 42.2 5.9 39 40-83 229-267 (310)
36 PRK08385 nicotinate-nucleotide 94.1 0.24 5.3E-06 39.9 7.1 66 5-96 196-262 (278)
37 PRK05567 inosine 5'-monophosph 94.1 0.2 4.4E-06 42.5 6.9 70 4-83 283-357 (486)
38 PRK01130 N-acetylmannosamine-6 94.0 0.23 5.1E-06 37.2 6.4 71 4-93 132-204 (221)
39 TIGR01302 IMP_dehydrog inosine 93.9 0.17 3.7E-06 42.6 6.1 67 4-81 279-351 (450)
40 cd02922 FCB2_FMN Flavocytochro 93.9 0.3 6.6E-06 40.2 7.4 67 4-81 227-295 (344)
41 TIGR00736 nifR3_rel_arch TIM-b 93.9 0.13 2.9E-06 40.3 5.1 59 4-81 154-215 (231)
42 PRK07807 inosine 5-monophospha 93.9 0.18 3.9E-06 43.3 6.2 74 4-92 282-365 (479)
43 TIGR02708 L_lactate_ox L-lacta 93.7 0.3 6.6E-06 40.8 7.2 64 4-81 242-307 (367)
44 TIGR01037 pyrD_sub1_fam dihydr 93.7 0.38 8.2E-06 37.7 7.3 24 53-81 235-258 (300)
45 cd04737 LOX_like_FMN L-Lactate 93.7 0.21 4.6E-06 41.3 6.1 64 4-81 235-300 (351)
46 cd04733 OYE_like_2_FMN Old yel 93.6 0.43 9.3E-06 38.4 7.7 79 3-84 154-254 (338)
47 cd02932 OYE_YqiM_FMN Old yello 93.6 0.48 1E-05 38.0 7.9 79 3-84 159-259 (336)
48 cd04729 NanE N-acetylmannosami 93.4 0.45 9.7E-06 35.7 7.1 63 5-81 137-201 (219)
49 PRK02506 dihydroorotate dehydr 93.4 0.14 3.1E-06 41.1 4.6 36 41-81 230-265 (310)
50 cd02801 DUS_like_FMN Dihydrour 93.3 0.46 1E-05 35.2 6.9 56 4-73 144-204 (231)
51 PRK07428 nicotinate-nucleotide 93.2 0.48 1E-05 38.4 7.4 64 5-96 210-274 (288)
52 cd00381 IMPDH IMPDH: The catal 93.1 0.35 7.6E-06 39.2 6.4 69 4-83 149-223 (325)
53 cd02803 OYE_like_FMN_family Ol 92.9 0.66 1.4E-05 36.5 7.6 81 3-84 146-246 (327)
54 COG3010 NanE Putative N-acetyl 92.9 0.38 8.3E-06 38.3 6.2 61 6-81 142-204 (229)
55 cd02808 GltS_FMN Glutamate syn 92.7 0.52 1.1E-05 39.2 7.1 28 51-83 284-311 (392)
56 TIGR02151 IPP_isom_2 isopenten 92.7 0.45 9.8E-06 38.6 6.5 26 51-81 253-278 (333)
57 PF01729 QRPTase_C: Quinolinat 92.6 0.37 8E-06 36.0 5.6 64 5-96 94-158 (169)
58 PRK05437 isopentenyl pyrophosp 92.6 0.77 1.7E-05 37.7 7.8 26 51-81 260-285 (352)
59 cd04740 DHOD_1B_like Dihydroor 92.5 0.57 1.2E-05 36.6 6.7 25 52-81 231-255 (296)
60 PRK08318 dihydropyrimidine deh 92.4 0.8 1.7E-05 37.8 7.8 37 41-82 241-278 (420)
61 PRK08649 inosine 5-monophospha 92.4 0.79 1.7E-05 38.2 7.7 79 4-87 201-286 (368)
62 PF01070 FMN_dh: FMN-dependent 92.4 0.65 1.4E-05 38.3 7.2 64 4-81 239-304 (356)
63 PLN02979 glycolate oxidase 92.3 0.69 1.5E-05 38.9 7.4 64 4-81 237-302 (366)
64 PRK04180 pyridoxal biosynthesi 92.3 0.13 2.9E-06 42.1 3.1 20 57-81 210-229 (293)
65 PF01645 Glu_synthase: Conserv 92.2 0.27 5.8E-06 41.2 4.8 80 6-95 222-307 (368)
66 PRK07259 dihydroorotate dehydr 92.2 0.68 1.5E-05 36.4 6.8 25 52-81 234-258 (301)
67 cd04731 HisF The cyclase subun 92.1 0.65 1.4E-05 35.2 6.5 24 53-81 72-95 (243)
68 PLN02495 oxidoreductase, actin 92.1 0.55 1.2E-05 39.5 6.5 28 50-82 268-295 (385)
69 TIGR01306 GMP_reduct_2 guanosi 91.8 0.44 9.6E-06 39.2 5.5 69 4-83 151-224 (321)
70 cd02911 arch_FMN Archeal FMN-b 91.7 0.79 1.7E-05 35.5 6.7 73 4-103 158-231 (233)
71 TIGR01304 IMP_DH_rel_2 IMP deh 91.6 1.1 2.3E-05 37.6 7.7 70 5-81 203-279 (369)
72 PLN02493 probable peroxisomal 91.5 0.98 2.1E-05 37.9 7.4 64 4-81 238-303 (367)
73 PRK09140 2-dehydro-3-deoxy-6-p 91.4 0.93 2E-05 34.6 6.7 64 5-96 118-182 (206)
74 COG0106 HisA Phosphoribosylfor 91.3 0.5 1.1E-05 37.8 5.2 36 32-81 64-99 (241)
75 cd02811 IDI-2_FMN Isopentenyl- 91.2 1 2.3E-05 36.4 7.1 25 52-81 255-279 (326)
76 PRK05742 nicotinate-nucleotide 91.1 0.88 1.9E-05 36.6 6.5 60 5-95 203-263 (277)
77 TIGR00262 trpA tryptophan synt 90.9 1.3 2.9E-05 34.7 7.2 57 11-81 165-222 (256)
78 TIGR01768 GGGP-family geranylg 90.8 0.77 1.7E-05 36.1 5.8 48 15-81 156-203 (223)
79 PRK04128 1-(5-phosphoribosyl)- 90.7 0.77 1.7E-05 35.5 5.7 34 52-95 73-106 (228)
80 COG0069 GltB Glutamate synthas 90.5 0.8 1.7E-05 39.9 6.1 78 7-96 323-408 (485)
81 PRK07107 inosine 5-monophospha 90.4 0.86 1.9E-05 39.4 6.3 63 3-83 246-309 (502)
82 PF01884 PcrB: PcrB family; I 90.2 0.47 1E-05 37.5 4.2 39 33-81 167-206 (230)
83 cd01573 modD_like ModD; Quinol 89.8 1.5 3.3E-05 34.9 6.8 62 6-95 198-260 (272)
84 cd00331 IGPS Indole-3-glycerol 89.6 1.5 3.2E-05 32.8 6.3 67 5-93 135-203 (217)
85 PRK07455 keto-hydroxyglutarate 89.5 1.3 2.8E-05 33.2 5.9 62 6-96 120-183 (187)
86 TIGR01303 IMP_DH_rel_1 IMP deh 89.5 1.4 3E-05 37.9 6.8 64 4-83 280-354 (475)
87 TIGR00343 pyridoxal 5'-phospha 89.5 1.3 2.9E-05 36.3 6.4 24 53-81 198-223 (287)
88 cd04747 OYE_like_5_FMN Old yel 89.4 2 4.4E-05 35.5 7.5 80 3-84 149-253 (361)
89 PRK05458 guanosine 5'-monophos 89.4 0.85 1.8E-05 37.6 5.2 27 52-83 201-227 (326)
90 PRK14024 phosphoribosyl isomer 89.3 1.1 2.3E-05 34.6 5.4 24 53-81 76-99 (241)
91 cd04723 HisA_HisF Phosphoribos 89.3 2.3 5E-05 32.6 7.3 34 53-96 79-112 (233)
92 PRK13523 NADPH dehydrogenase N 88.9 2.7 5.9E-05 34.3 7.8 78 3-83 147-244 (337)
93 PRK11197 lldD L-lactate dehydr 88.9 2 4.4E-05 36.1 7.2 65 4-81 259-324 (381)
94 TIGR01769 GGGP geranylgeranylg 88.7 2 4.2E-05 33.3 6.5 57 5-81 141-200 (205)
95 cd01571 NAPRTase_B Nicotinate 88.6 1.2 2.7E-05 35.9 5.5 52 23-96 224-276 (302)
96 PRK07028 bifunctional hexulose 88.3 1.6 3.4E-05 36.3 6.1 61 5-82 125-186 (430)
97 cd04722 TIM_phosphate_binding 87.7 3.4 7.5E-05 28.4 6.7 26 51-81 169-194 (200)
98 PRK07896 nicotinate-nucleotide 87.7 2.7 5.9E-05 34.2 7.0 64 5-96 213-277 (289)
99 PRK00043 thiE thiamine-phospha 87.6 3.1 6.6E-05 30.3 6.7 62 5-81 118-183 (212)
100 PRK13587 1-(5-phosphoribosyl)- 87.6 2.2 4.8E-05 33.0 6.2 33 53-95 77-109 (234)
101 TIGR02129 hisA_euk phosphoribo 87.5 1.9 4.1E-05 34.5 5.9 30 52-94 76-105 (253)
102 PRK10605 N-ethylmaleimide redu 87.2 4.1 8.8E-05 33.5 7.9 76 3-84 164-267 (362)
103 PRK06552 keto-hydroxyglutarate 87.2 2.6 5.7E-05 32.4 6.4 62 5-96 123-186 (213)
104 TIGR00078 nadC nicotinate-nucl 86.9 3 6.5E-05 33.1 6.8 60 5-95 192-252 (265)
105 cd02931 ER_like_FMN Enoate red 86.8 4.2 9.1E-05 33.6 7.8 80 3-84 155-270 (382)
106 PRK08227 autoinducer 2 aldolas 86.5 2.9 6.2E-05 33.6 6.5 57 2-80 162-220 (264)
107 cd04730 NPD_like 2-Nitropropan 86.4 3.3 7.2E-05 30.8 6.4 24 53-81 157-180 (236)
108 PRK06852 aldolase; Validated 86.4 3.6 7.8E-05 33.8 7.1 65 2-80 192-259 (304)
109 cd04728 ThiG Thiazole synthase 86.1 4.2 9.1E-05 32.8 7.2 57 4-81 137-199 (248)
110 COG0107 HisF Imidazoleglycerol 86.0 1.2 2.6E-05 36.1 4.0 46 32-84 56-101 (256)
111 PRK07695 transcriptional regul 85.9 5.1 0.00011 29.6 7.2 63 5-81 109-172 (201)
112 PRK10415 tRNA-dihydrouridine s 85.8 3.3 7.1E-05 33.4 6.5 61 4-73 155-215 (321)
113 PRK04302 triosephosphate isome 85.8 2.6 5.7E-05 31.9 5.7 50 32-95 157-206 (223)
114 cd04727 pdxS PdxS is a subunit 85.7 2.8 6E-05 34.4 6.1 20 57-81 201-220 (283)
115 cd00956 Transaldolase_FSA Tran 85.6 2.9 6.3E-05 32.0 5.9 66 4-82 115-181 (211)
116 PRK02083 imidazole glycerol ph 85.6 2.7 5.9E-05 32.2 5.7 25 52-81 74-98 (253)
117 PRK14114 1-(5-phosphoribosyl)- 85.5 1.9 4.2E-05 33.7 5.0 32 53-94 74-105 (241)
118 PRK06096 molybdenum transport 85.5 4 8.6E-05 33.1 6.9 56 5-81 203-259 (284)
119 PF00478 IMPDH: IMP dehydrogen 85.3 2.6 5.7E-05 35.2 5.9 65 3-93 112-179 (352)
120 cd01572 QPRTase Quinolinate ph 85.0 3.3 7.2E-05 32.9 6.2 60 5-95 196-256 (268)
121 cd02812 PcrB_like PcrB_like pr 85.0 2.6 5.7E-05 32.9 5.4 24 53-81 176-199 (219)
122 PRK09016 quinolinate phosphori 84.7 4.8 0.0001 33.0 7.0 60 5-95 222-282 (296)
123 TIGR01334 modD putative molybd 84.6 4.4 9.6E-05 32.7 6.8 57 4-81 201-258 (277)
124 TIGR00735 hisF imidazoleglycer 84.6 3.2 6.9E-05 32.1 5.7 33 52-94 74-106 (254)
125 PRK09250 fructose-bisphosphate 84.6 3.6 7.8E-05 34.6 6.4 70 2-74 221-304 (348)
126 TIGR03151 enACPred_II putative 84.5 3.2 7E-05 33.4 6.0 63 5-81 123-185 (307)
127 PF00977 His_biosynth: Histidi 84.5 2.6 5.6E-05 32.3 5.1 33 53-95 74-106 (229)
128 PRK08072 nicotinate-nucleotide 84.4 4.2 9.1E-05 32.7 6.5 60 5-95 202-262 (277)
129 cd04734 OYE_like_3_FMN Old yel 84.4 6.2 0.00013 32.1 7.6 80 3-84 146-247 (343)
130 PRK00748 1-(5-phosphoribosyl)- 84.2 3.9 8.5E-05 30.5 6.0 32 53-94 75-106 (233)
131 cd02933 OYE_like_FMN Old yello 84.1 5.4 0.00012 32.5 7.1 81 3-85 157-260 (338)
132 TIGR00693 thiE thiamine-phosph 84.1 7.1 0.00015 28.3 7.1 61 6-81 111-175 (196)
133 PRK13585 1-(5-phosphoribosyl)- 84.1 5.4 0.00012 30.0 6.7 25 52-81 193-217 (241)
134 PRK11750 gltB glutamate syntha 83.9 3.2 7E-05 40.7 6.5 69 7-82 1016-1092(1485)
135 PRK00208 thiG thiazole synthas 83.9 7 0.00015 31.5 7.5 57 4-81 137-199 (250)
136 PLN02411 12-oxophytodienoate r 83.8 4.6 9.9E-05 33.6 6.7 76 3-83 170-277 (391)
137 cd02801 DUS_like_FMN Dihydrour 83.6 5.1 0.00011 29.6 6.3 79 3-83 72-155 (231)
138 cd02810 DHOD_DHPD_FMN Dihydroo 83.5 5.8 0.00013 30.7 6.8 77 4-84 117-194 (289)
139 cd04726 KGPDC_HPS 3-Keto-L-gul 83.4 5.3 0.00011 29.0 6.2 58 7-81 122-181 (202)
140 cd00564 TMP_TenI Thiamine mono 83.0 7.6 0.00017 27.3 6.8 60 5-81 109-173 (196)
141 cd02930 DCR_FMN 2,4-dienoyl-Co 83.0 8.5 0.00018 31.2 7.8 79 3-83 142-241 (353)
142 TIGR00875 fsa_talC_mipB fructo 82.8 5.5 0.00012 30.8 6.4 64 5-81 116-180 (213)
143 COG1646 Predicted phosphate-bi 82.8 2.8 6.2E-05 33.6 4.9 23 54-81 193-215 (240)
144 cd04731 HisF The cyclase subun 82.4 4.2 9.2E-05 30.8 5.6 63 5-81 156-218 (243)
145 TIGR01305 GMP_reduct_1 guanosi 82.3 5.9 0.00013 33.3 6.8 66 4-82 164-237 (343)
146 KOG1436|consensus 81.7 2.6 5.7E-05 35.8 4.5 38 40-82 319-356 (398)
147 TIGR00737 nifR3_yhdG putative 81.6 5 0.00011 31.9 5.9 59 5-73 154-213 (319)
148 PRK06843 inosine 5-monophospha 81.3 4.6 9.9E-05 34.4 5.9 60 3-83 157-219 (404)
149 cd04732 HisA HisA. Phosphorib 81.3 10 0.00022 28.2 7.2 24 53-81 74-97 (234)
150 PRK04169 geranylgeranylglycery 81.2 5.8 0.00013 31.2 6.1 22 55-81 187-208 (232)
151 PRK06559 nicotinate-nucleotide 81.1 7.3 0.00016 31.8 6.8 59 5-94 211-270 (290)
152 PRK08649 inosine 5-monophospha 81.0 4.4 9.6E-05 33.8 5.6 61 3-83 146-212 (368)
153 PRK00278 trpC indole-3-glycero 81.0 6.1 0.00013 31.0 6.2 27 57-93 216-242 (260)
154 TIGR03572 WbuZ glycosyl amidat 80.9 7.8 0.00017 29.1 6.5 63 5-81 160-222 (232)
155 TIGR01919 hisA-trpF 1-(5-phosp 80.8 4.3 9.3E-05 31.7 5.2 24 53-81 75-98 (243)
156 PRK06978 nicotinate-nucleotide 80.7 7.6 0.00016 31.8 6.8 53 5-81 219-272 (294)
157 PRK06015 keto-hydroxyglutarate 80.5 7.2 0.00016 30.1 6.3 61 4-87 22-85 (201)
158 cd00331 IGPS Indole-3-glycerol 80.1 5.1 0.00011 29.8 5.2 61 4-83 37-98 (217)
159 TIGR00007 phosphoribosylformim 80.0 9.2 0.0002 28.6 6.6 25 52-81 189-213 (230)
160 PRK01362 putative translaldola 79.9 8.7 0.00019 29.8 6.6 64 5-81 116-180 (214)
161 PRK08255 salicylyl-CoA 5-hydro 79.7 8.1 0.00018 34.6 7.2 77 3-85 556-657 (765)
162 PRK06543 nicotinate-nucleotide 79.5 8.6 0.00019 31.2 6.7 59 5-94 207-266 (281)
163 PRK13586 1-(5-phosphoribosyl)- 79.1 2.1 4.6E-05 33.2 3.0 31 54-94 75-105 (232)
164 TIGR00007 phosphoribosylformim 78.8 4.7 0.0001 30.1 4.7 25 50-81 72-96 (230)
165 PRK06106 nicotinate-nucleotide 78.5 9.6 0.00021 30.9 6.7 60 5-95 208-268 (281)
166 cd00381 IMPDH IMPDH: The catal 78.4 5.2 0.00011 32.4 5.2 63 3-84 98-161 (325)
167 PRK10550 tRNA-dihydrouridine s 78.2 7.5 0.00016 31.5 6.0 61 4-73 154-215 (312)
168 TIGR01182 eda Entner-Doudoroff 77.6 22 0.00047 27.5 8.1 61 4-87 26-89 (204)
169 PTZ00314 inosine-5'-monophosph 77.5 8.4 0.00018 33.2 6.4 61 3-83 245-307 (495)
170 PF09370 TIM-br_sig_trns: TIM- 77.4 7.2 0.00016 31.8 5.6 82 5-95 164-249 (268)
171 PRK13585 1-(5-phosphoribosyl)- 77.4 5.5 0.00012 30.0 4.8 24 53-81 77-100 (241)
172 PF03060 NMO: Nitronate monoox 76.9 11 0.00023 30.4 6.5 72 4-92 149-220 (330)
173 cd01568 QPRTase_NadC Quinolina 76.5 12 0.00026 29.6 6.6 62 5-95 195-257 (269)
174 KOG0538|consensus 76.3 16 0.00035 30.9 7.5 61 4-81 237-302 (363)
175 PRK07114 keto-hydroxyglutarate 76.1 15 0.00033 28.6 7.0 65 4-87 33-100 (222)
176 CHL00200 trpA tryptophan synth 76.0 18 0.00038 28.8 7.4 53 15-81 174-226 (263)
177 PF00478 IMPDH: IMP dehydrogen 76.0 5.2 0.00011 33.5 4.6 69 4-83 163-237 (352)
178 cd02929 TMADH_HD_FMN Trimethyl 75.7 19 0.00042 29.6 7.8 70 3-77 155-251 (370)
179 COG1304 idi Isopentenyl diphos 75.6 5.3 0.00012 33.4 4.6 28 49-81 270-297 (360)
180 PRK01033 imidazole glycerol ph 75.3 6.3 0.00014 30.7 4.7 25 52-81 74-98 (258)
181 PRK12653 fructose-6-phosphate 75.1 14 0.0003 28.8 6.5 63 6-81 119-182 (220)
182 PRK07114 keto-hydroxyglutarate 74.8 6.4 0.00014 30.8 4.6 31 52-94 158-189 (222)
183 cd04735 OYE_like_4_FMN Old yel 74.5 22 0.00048 28.9 7.8 79 3-84 149-253 (353)
184 TIGR00735 hisF imidazoleglycer 74.3 9.8 0.00021 29.4 5.5 58 5-72 162-219 (254)
185 TIGR01304 IMP_DH_rel_2 IMP deh 74.0 11 0.00024 31.6 6.0 60 4-83 148-213 (369)
186 PLN02446 (5-phosphoribosyl)-5- 73.6 10 0.00022 30.5 5.6 23 53-81 84-106 (262)
187 TIGR00734 hisAF_rel hisA/hisF 73.3 7.6 0.00016 29.7 4.6 25 52-81 184-208 (221)
188 PRK13523 NADPH dehydrogenase N 73.3 11 0.00024 30.7 5.9 20 53-72 276-295 (337)
189 COG1830 FbaB DhnA-type fructos 73.2 12 0.00026 30.5 5.9 58 3-80 171-231 (265)
190 PLN02274 inosine-5'-monophosph 71.4 12 0.00026 32.4 5.9 61 3-83 252-314 (505)
191 COG0042 tRNA-dihydrouridine sy 70.8 13 0.00028 30.3 5.6 57 4-73 158-219 (323)
192 PRK11815 tRNA-dihydrouridine s 70.5 11 0.00024 30.6 5.2 21 52-72 205-225 (333)
193 PRK12655 fructose-6-phosphate 70.2 19 0.0004 28.1 6.2 63 6-81 119-182 (220)
194 cd04735 OYE_like_4_FMN Old yel 70.2 16 0.00035 29.7 6.1 62 4-72 241-304 (353)
195 cd04742 NPD_FabD 2-Nitropropan 70.1 22 0.00048 30.5 7.1 33 52-89 219-251 (418)
196 cd04723 HisA_HisF Phosphoribos 70.0 13 0.00029 28.4 5.3 25 52-81 189-213 (233)
197 PRK01130 N-acetylmannosamine-6 69.9 13 0.00029 27.7 5.2 64 4-85 81-145 (221)
198 KOG2335|consensus 69.8 12 0.00026 31.7 5.4 57 4-73 161-224 (358)
199 PRK06552 keto-hydroxyglutarate 69.0 25 0.00055 27.0 6.7 62 4-87 31-97 (213)
200 COG1902 NemA NADH:flavin oxido 68.6 28 0.0006 29.1 7.2 78 3-82 154-254 (363)
201 cd04732 HisA HisA. Phosphorib 68.2 25 0.00054 26.1 6.4 25 52-81 190-214 (234)
202 PLN02617 imidazole glycerol ph 67.7 13 0.00028 32.7 5.3 25 52-81 314-349 (538)
203 PRK05437 isopentenyl pyrophosp 67.6 13 0.00028 30.5 5.1 47 34-85 170-216 (352)
204 PRK05718 keto-hydroxyglutarate 67.6 23 0.00051 27.3 6.2 62 4-88 33-97 (212)
205 CHL00162 thiG thiamin biosynth 67.5 27 0.00059 28.5 6.8 63 4-81 151-213 (267)
206 PF09043 Lys-AminoMut_A: D-Lys 67.5 8.4 0.00018 33.9 4.1 51 15-70 194-245 (509)
207 PLN02363 phosphoribosylanthran 67.4 8 0.00017 30.7 3.7 27 50-82 44-70 (256)
208 cd00516 PRTase_typeII Phosphor 67.1 21 0.00045 27.7 5.9 46 38-96 225-270 (281)
209 TIGR03572 WbuZ glycosyl amidat 67.1 28 0.00061 26.1 6.5 24 53-81 75-98 (232)
210 PRK13957 indole-3-glycerol-pho 65.5 22 0.00048 28.3 5.9 65 5-93 165-232 (247)
211 TIGR01302 IMP_dehydrog inosine 65.4 21 0.00046 30.1 6.1 60 3-83 228-290 (450)
212 cd00452 KDPG_aldolase KDPG and 65.1 13 0.00028 27.3 4.3 52 4-83 69-121 (190)
213 TIGR00742 yjbN tRNA dihydrouri 65.0 29 0.00062 28.2 6.6 51 32-83 105-158 (318)
214 PRK02615 thiamine-phosphate py 64.8 30 0.00066 28.8 6.7 68 5-96 254-325 (347)
215 PRK12656 fructose-6-phosphate 64.7 41 0.00089 26.3 7.2 64 5-81 120-184 (222)
216 TIGR02151 IPP_isom_2 isopenten 64.3 21 0.00045 29.0 5.6 47 35-86 164-210 (333)
217 PRK08745 ribulose-phosphate 3- 64.3 33 0.00072 26.6 6.5 51 32-92 155-205 (223)
218 COG0269 SgbH 3-hexulose-6-phos 63.8 26 0.00057 27.7 5.9 78 4-99 73-154 (217)
219 PRK08662 nicotinate phosphorib 63.7 23 0.0005 29.2 5.9 21 51-72 260-280 (343)
220 PRK14024 phosphoribosyl isomer 63.6 24 0.00051 27.1 5.6 21 52-72 190-210 (241)
221 cd03316 MR_like Mandelate race 63.5 42 0.00091 26.6 7.1 30 52-83 191-220 (357)
222 cd04729 NanE N-acetylmannosami 63.4 16 0.00036 27.2 4.6 63 4-84 85-148 (219)
223 PF00218 IGPS: Indole-3-glycer 63.4 8.4 0.00018 30.7 3.1 67 5-93 172-240 (254)
224 PRK11815 tRNA-dihydrouridine s 63.3 16 0.00034 29.7 4.7 52 32-84 115-169 (333)
225 PF00724 Oxidored_FMN: NADH:fl 63.3 20 0.00042 29.0 5.3 71 3-74 154-245 (341)
226 TIGR01182 eda Entner-Doudoroff 63.3 16 0.00035 28.2 4.6 63 6-96 116-179 (204)
227 PRK01222 N-(5'-phosphoribosyl) 62.0 13 0.00028 28.3 3.9 43 54-102 4-50 (210)
228 PRK04128 1-(5-phosphoribosyl)- 61.9 8 0.00017 29.8 2.7 25 52-81 182-206 (228)
229 PRK05567 inosine 5'-monophosph 61.9 20 0.00044 30.5 5.4 20 59-83 275-294 (486)
230 PRK05096 guanosine 5'-monophos 61.7 19 0.00042 30.3 5.1 69 4-83 165-239 (346)
231 PRK13587 1-(5-phosphoribosyl)- 61.7 17 0.00036 28.1 4.5 25 52-81 192-216 (234)
232 cd04734 OYE_like_3_FMN Old yel 61.3 24 0.00053 28.6 5.5 20 53-72 286-305 (343)
233 PRK06015 keto-hydroxyglutarate 61.2 23 0.0005 27.3 5.1 49 6-72 112-163 (201)
234 PRK10550 tRNA-dihydrouridine s 61.2 19 0.00042 29.1 4.9 51 32-83 113-165 (312)
235 PRK13125 trpA tryptophan synth 61.2 36 0.00078 26.2 6.2 34 55-99 188-221 (244)
236 TIGR03128 RuMP_HxlA 3-hexulose 61.1 37 0.00079 24.8 6.0 61 4-83 69-130 (206)
237 cd04740 DHOD_1B_like Dihydroor 60.9 45 0.00098 25.9 6.8 70 4-83 108-183 (296)
238 PLN02716 nicotinate-nucleotide 60.9 27 0.00059 28.8 5.7 38 34-81 248-285 (308)
239 PRK01033 imidazole glycerol ph 60.6 33 0.00073 26.6 6.0 27 51-81 195-221 (258)
240 PTZ00095 40S ribosomal protein 60.4 8.4 0.00018 29.5 2.5 15 12-26 56-71 (169)
241 TIGR00737 nifR3_yhdG putative 60.1 35 0.00075 27.2 6.1 79 3-83 80-164 (319)
242 PRK08508 biotin synthase; Prov 60.0 46 0.00099 26.2 6.7 61 9-83 54-116 (279)
243 PRK00748 1-(5-phosphoribosyl)- 59.0 36 0.00078 25.3 5.8 20 53-72 191-210 (233)
244 TIGR02814 pfaD_fam PfaD family 58.7 19 0.00041 31.1 4.7 35 50-89 222-256 (444)
245 TIGR00742 yjbN tRNA dihydrouri 58.5 22 0.00049 28.8 4.9 21 52-72 195-215 (318)
246 COG2238 RPS19A Ribosomal prote 58.4 6.4 0.00014 29.6 1.6 15 12-26 32-47 (147)
247 PRK05718 keto-hydroxyglutarate 57.9 17 0.00037 28.0 3.9 53 4-83 80-132 (212)
248 COG2070 Dioxygenases related t 57.6 29 0.00062 28.6 5.4 78 4-92 140-219 (336)
249 PF01081 Aldolase: KDPG and KH 57.3 86 0.0019 24.0 8.1 60 4-86 26-88 (196)
250 COG0119 LeuA Isopropylmalate/h 56.9 27 0.00058 29.7 5.2 73 4-93 209-285 (409)
251 PRK07807 inosine 5-monophospha 56.8 36 0.00079 29.4 6.1 60 4-84 232-294 (479)
252 KOG2550|consensus 56.4 35 0.00075 30.1 5.8 72 4-101 256-330 (503)
253 COG0134 TrpC Indole-3-glycerol 56.2 35 0.00076 27.5 5.5 25 59-93 214-238 (254)
254 PRK13586 1-(5-phosphoribosyl)- 55.8 23 0.00051 27.4 4.4 22 55-81 192-213 (232)
255 cd02931 ER_like_FMN Enoate red 55.7 35 0.00075 28.2 5.6 20 53-72 306-325 (382)
256 PLN02591 tryptophan synthase 55.5 92 0.002 24.6 7.7 39 33-81 175-213 (250)
257 PRK06256 biotin synthase; Vali 55.1 31 0.00068 27.3 5.1 63 5-82 101-165 (336)
258 PRK13802 bifunctional indole-3 54.9 40 0.00086 30.7 6.2 34 49-93 208-242 (695)
259 PRK02083 imidazole glycerol ph 54.8 57 0.0012 24.9 6.4 26 52-81 197-222 (253)
260 cd02811 IDI-2_FMN Isopentenyl- 54.5 33 0.00072 27.7 5.2 46 34-84 162-207 (326)
261 TIGR01305 GMP_reduct_1 guanosi 54.4 57 0.0012 27.5 6.6 57 4-81 112-173 (343)
262 PLN02446 (5-phosphoribosyl)-5- 54.2 15 0.00032 29.6 3.1 23 51-73 206-228 (262)
263 PRK05096 guanosine 5'-monophos 53.7 49 0.0011 28.0 6.2 51 10-81 121-174 (346)
264 PRK07259 dihydroorotate dehydr 53.0 71 0.0015 25.0 6.8 75 4-83 110-186 (301)
265 PRK05692 hydroxymethylglutaryl 52.5 47 0.001 26.5 5.7 61 4-79 217-283 (287)
266 cd04737 LOX_like_FMN L-Lactate 51.8 30 0.00066 28.7 4.7 37 32-83 210-246 (351)
267 TIGR02708 L_lactate_ox L-lacta 51.5 30 0.00065 29.1 4.6 39 30-83 215-253 (367)
268 TIGR01163 rpe ribulose-phospha 51.4 37 0.00081 24.5 4.7 25 52-82 165-189 (210)
269 TIGR01306 GMP_reduct_2 guanosi 51.2 54 0.0012 27.1 6.0 26 53-83 137-162 (321)
270 PRK07188 nicotinate phosphorib 50.1 50 0.0011 27.6 5.7 49 32-93 263-312 (352)
271 PRK13813 orotidine 5'-phosphat 50.0 52 0.0011 24.3 5.3 67 4-94 132-200 (215)
272 cd02911 arch_FMN Archeal FMN-b 49.5 48 0.001 25.6 5.2 53 35-91 125-177 (233)
273 cd02808 GltS_FMN Glutamate syn 49.4 53 0.0011 27.3 5.7 42 37-83 200-242 (392)
274 cd08205 RuBisCO_IV_RLP Ribulos 48.8 87 0.0019 26.0 6.9 71 4-82 152-226 (367)
275 PF00977 His_biosynth: Histidi 48.8 30 0.00064 26.4 3.9 25 52-81 191-215 (229)
276 cd00405 PRAI Phosphoribosylant 48.7 16 0.00034 27.0 2.3 23 55-83 1-23 (203)
277 PRK09333 30S ribosomal protein 48.7 13 0.00028 27.9 1.9 15 12-26 32-47 (150)
278 PRK02714 O-succinylbenzoate sy 48.2 59 0.0013 26.0 5.7 44 36-81 120-163 (320)
279 PF05582 Peptidase_U57: YabG p 47.4 15 0.00033 30.2 2.3 51 2-63 207-274 (287)
280 PRK08091 ribulose-phosphate 3- 46.9 95 0.0021 24.4 6.5 50 32-91 163-212 (228)
281 cd00429 RPE Ribulose-5-phospha 46.4 38 0.00081 24.4 4.0 24 52-81 166-189 (211)
282 cd02932 OYE_YqiM_FMN Old yello 46.1 68 0.0015 25.7 5.8 20 53-72 291-310 (336)
283 TIGR01037 pyrD_sub1_fam dihydr 46.1 1.1E+02 0.0023 23.9 6.8 48 33-84 140-187 (300)
284 PRK09427 bifunctional indole-3 45.9 64 0.0014 27.8 5.8 66 5-93 173-240 (454)
285 COG0157 NadC Nicotinate-nucleo 45.3 67 0.0015 26.4 5.6 27 49-81 231-257 (280)
286 PF03932 CutC: CutC family; I 45.1 47 0.001 25.6 4.5 63 4-83 133-196 (201)
287 PTZ00411 transaldolase-like pr 45.0 1.5E+02 0.0031 24.8 7.6 31 43-81 220-250 (333)
288 PRK08005 epimerase; Validated 45.0 66 0.0014 24.9 5.3 32 54-91 165-196 (210)
289 PRK13111 trpA tryptophan synth 45.0 1.3E+02 0.0027 23.8 7.1 36 32-72 185-220 (258)
290 PRK07360 FO synthase subunit 2 44.8 1.1E+02 0.0024 25.0 6.9 65 4-83 100-177 (371)
291 COG5564 Predicted TIM-barrel e 44.7 47 0.001 27.1 4.6 79 4-94 169-254 (276)
292 TIGR01303 IMP_DH_rel_1 IMP deh 44.4 1.2E+02 0.0027 26.1 7.4 60 3-83 229-291 (475)
293 PRK13958 N-(5'-phosphoribosyl) 44.4 33 0.00072 26.0 3.6 22 55-82 3-24 (207)
294 cd03313 enolase Enolase: Enola 43.7 68 0.0015 26.8 5.6 52 32-83 213-282 (408)
295 cd04733 OYE_like_2_FMN Old yel 43.7 84 0.0018 25.2 6.0 21 52-72 292-312 (338)
296 PRK14114 1-(5-phosphoribosyl)- 42.6 42 0.00092 26.2 4.0 23 51-73 187-209 (241)
297 cd03319 L-Ala-DL-Glu_epimerase 42.5 97 0.0021 24.3 6.1 31 51-83 178-208 (316)
298 PRK07565 dihydroorotate dehydr 42.2 1.6E+02 0.0035 23.6 7.4 69 4-83 120-194 (334)
299 cd02933 OYE_like_FMN Old yello 41.2 81 0.0018 25.7 5.6 54 4-72 247-304 (338)
300 TIGR02129 hisA_euk phosphoribo 41.2 46 0.00099 26.7 4.0 22 51-72 200-221 (253)
301 PRK08883 ribulose-phosphate 3- 40.8 98 0.0021 23.8 5.7 43 32-84 151-193 (220)
302 cd02922 FCB2_FMN Flavocytochro 40.6 56 0.0012 26.9 4.6 37 32-83 202-238 (344)
303 KOG1606|consensus 40.3 42 0.0009 27.4 3.7 25 53-82 210-234 (296)
304 PLN02334 ribulose-phosphate 3- 39.8 42 0.00091 25.4 3.5 25 53-83 175-199 (229)
305 PRK12309 transaldolase/EF-hand 39.7 2E+02 0.0044 24.3 7.9 32 42-81 213-244 (391)
306 cd02930 DCR_FMN 2,4-dienoyl-Co 39.4 1.2E+02 0.0026 24.5 6.3 62 5-72 231-296 (353)
307 COG0106 HisA Phosphoribosylfor 39.1 57 0.0012 26.2 4.3 21 52-72 191-211 (241)
308 cd03329 MR_like_4 Mandelate ra 39.1 1E+02 0.0023 24.9 5.9 46 35-81 144-189 (368)
309 TIGR02855 spore_yabG sporulati 38.7 26 0.00056 28.9 2.3 19 2-20 206-228 (283)
310 COG0135 TrpF Phosphoribosylant 38.2 45 0.00097 25.9 3.5 24 53-82 2-25 (208)
311 PRK09722 allulose-6-phosphate 37.9 1.6E+02 0.0035 23.0 6.6 32 49-86 166-197 (229)
312 PRK13307 bifunctional formalde 37.9 96 0.0021 26.3 5.7 67 9-92 297-364 (391)
313 cd04736 MDH_FMN Mandelate dehy 37.8 58 0.0013 27.3 4.3 27 49-83 235-261 (361)
314 TIGR00734 hisAF_rel hisA/hisF 37.5 55 0.0012 25.0 3.8 19 54-72 79-97 (221)
315 cd08210 RLP_RrRLP Ribulose bis 37.3 2.4E+02 0.0051 23.6 7.8 73 4-82 147-221 (364)
316 PRK00230 orotidine 5'-phosphat 36.2 73 0.0016 24.4 4.4 20 78-97 199-218 (230)
317 COG0800 Eda 2-keto-3-deoxy-6-p 36.1 82 0.0018 24.8 4.6 31 52-88 64-95 (211)
318 PRK11840 bifunctional sulfur c 36.0 82 0.0018 26.4 4.9 36 32-81 238-273 (326)
319 TIGR00970 leuA_yeast 2-isoprop 35.9 99 0.0022 27.3 5.6 72 4-93 255-328 (564)
320 TIGR00640 acid_CoA_mut_C methy 35.9 1.6E+02 0.0034 20.9 8.4 76 4-103 46-123 (132)
321 PLN02460 indole-3-glycerol-pho 35.8 1.1E+02 0.0025 25.6 5.7 32 52-93 288-319 (338)
322 cd03332 LMO_FMN L-Lactate 2-mo 35.3 68 0.0015 27.1 4.3 37 32-83 242-278 (383)
323 cd02809 alpha_hydroxyacid_oxid 35.3 70 0.0015 25.3 4.2 29 47-83 169-197 (299)
324 COG1902 NemA NADH:flavin oxido 35.0 1.5E+02 0.0033 24.7 6.4 21 52-72 288-308 (363)
325 PF00697 PRAI: N-(5'phosphorib 34.7 42 0.0009 25.0 2.7 22 55-82 1-22 (197)
326 COG0036 Rpe Pentose-5-phosphat 34.4 2E+02 0.0044 22.8 6.6 37 52-94 169-205 (220)
327 PTZ00170 D-ribulose-5-phosphat 34.4 92 0.002 23.8 4.7 35 52-92 173-207 (228)
328 cd03319 L-Ala-DL-Glu_epimerase 34.4 83 0.0018 24.7 4.5 38 52-93 228-265 (316)
329 PF05690 ThiG: Thiazole biosyn 34.2 39 0.00085 27.4 2.6 25 59-83 70-94 (247)
330 TIGR01060 eno phosphopyruvate 34.0 1.5E+02 0.0032 25.0 6.2 52 32-83 213-283 (425)
331 COG4981 Enoyl reductase domain 33.8 74 0.0016 29.2 4.5 22 52-73 124-145 (717)
332 PRK00077 eno enolase; Provisio 33.4 1.3E+02 0.0027 25.4 5.7 52 32-83 216-282 (425)
333 cd03329 MR_like_4 Mandelate ra 32.8 1.2E+02 0.0026 24.5 5.3 35 47-83 184-220 (368)
334 PF01474 DAHP_synth_2: Class-I 32.6 1.3E+02 0.0028 26.3 5.6 54 32-99 272-329 (439)
335 PRK08255 salicylyl-CoA 5-hydro 32.5 1.4E+02 0.003 26.9 6.1 22 52-73 687-708 (765)
336 PF01645 Glu_synthase: Conserv 31.8 94 0.002 26.2 4.6 45 34-83 186-231 (368)
337 cd03321 mandelate_racemase Man 31.7 83 0.0018 25.3 4.2 29 51-81 158-186 (355)
338 PF01207 Dus: Dihydrouridine s 31.5 37 0.0008 27.2 2.1 60 4-72 144-203 (309)
339 PLN02321 2-isopropylmalate syn 31.4 1.6E+02 0.0035 26.6 6.2 78 4-93 305-384 (632)
340 PRK10415 tRNA-dihydrouridine s 31.4 1.9E+02 0.0041 23.3 6.2 78 4-83 83-166 (321)
341 cd04747 OYE_like_5_FMN Old yel 31.3 1.5E+02 0.0033 24.6 5.7 57 5-72 242-318 (361)
342 PRK14109 bifunctional glutamin 31.1 72 0.0016 30.0 4.2 42 32-74 349-392 (1007)
343 PRK05581 ribulose-phosphate 3- 30.9 1.1E+02 0.0024 22.3 4.5 24 53-82 171-194 (220)
344 cd03318 MLE Muconate Lactonizi 30.8 1.3E+02 0.0029 24.1 5.2 29 51-81 160-188 (365)
345 PRK08645 bifunctional homocyst 30.6 2.5E+02 0.0055 24.8 7.2 88 7-104 52-158 (612)
346 cd04728 ThiG Thiazole synthase 30.4 54 0.0012 26.5 2.9 44 59-104 70-114 (248)
347 cd00019 AP2Ec AP endonuclease 30.1 2.5E+02 0.0053 21.3 7.7 67 3-74 90-165 (279)
348 COG0149 TpiA Triosephosphate i 30.0 1.9E+02 0.0042 23.3 5.9 69 17-103 172-244 (251)
349 TIGR01919 hisA-trpF 1-(5-phosp 30.0 77 0.0017 24.6 3.6 22 51-72 192-213 (243)
350 cd04724 Tryptophan_synthase_al 29.7 2.6E+02 0.0056 21.5 7.7 37 52-100 187-223 (242)
351 PRK14057 epimerase; Provisiona 29.0 1.8E+02 0.0039 23.4 5.6 51 32-92 177-227 (254)
352 cd02940 DHPD_FMN Dihydropyrimi 29.0 2.9E+02 0.0063 21.8 6.9 45 36-84 154-198 (299)
353 PRK14567 triosephosphate isome 28.8 2.1E+02 0.0046 22.8 6.0 62 17-96 171-236 (253)
354 TIGR00676 fadh2 5,10-methylene 28.8 1.3E+02 0.0028 23.6 4.7 49 8-72 154-206 (272)
355 PRK09389 (R)-citramalate synth 28.8 1.9E+02 0.0041 25.0 6.1 73 4-93 204-278 (488)
356 cd04743 NPD_PKS 2-Nitropropane 28.7 2.1E+02 0.0046 23.7 6.1 69 4-72 116-185 (320)
357 PRK02901 O-succinylbenzoate sy 28.6 47 0.001 27.1 2.3 35 53-91 183-219 (327)
358 cd02929 TMADH_HD_FMN Trimethyl 28.5 2.1E+02 0.0046 23.5 6.1 21 53-73 290-310 (370)
359 TIGR00419 tim triosephosphate 28.4 1.7E+02 0.0036 22.5 5.2 60 17-95 143-202 (205)
360 cd04739 DHOD_like Dihydroorota 28.2 3.2E+02 0.0069 22.0 7.4 42 38-83 151-192 (325)
361 PF01985 CRS1_YhbY: CRS1 / Yhb 28.1 1.8E+02 0.0038 19.0 5.0 48 22-81 24-71 (84)
362 smart00052 EAL Putative diguan 28.1 2.1E+02 0.0046 20.4 5.5 62 9-84 166-229 (241)
363 cd00956 Transaldolase_FSA Tran 28.0 45 0.00098 25.4 2.0 28 59-91 107-134 (211)
364 PRK00208 thiG thiazole synthas 28.0 62 0.0013 26.2 2.8 25 59-83 70-94 (250)
365 PF11880 DUF3400: Domain of un 27.9 27 0.00058 21.5 0.6 15 70-84 15-29 (45)
366 PRK04180 pyridoxal biosynthesi 27.8 2.1E+02 0.0045 23.7 5.9 27 55-93 122-148 (293)
367 cd04727 pdxS PdxS is a subunit 27.0 2E+02 0.0043 23.7 5.6 55 4-82 80-135 (283)
368 cd00311 TIM Triosephosphate is 26.7 3.1E+02 0.0068 21.5 7.2 61 17-95 168-232 (242)
369 TIGR00343 pyridoxal 5'-phospha 26.1 1.3E+02 0.0028 24.9 4.4 28 54-93 114-141 (287)
370 TIGR00736 nifR3_rel_arch TIM-b 26.1 1.5E+02 0.0033 23.2 4.7 50 32-87 117-169 (231)
371 cd02071 MM_CoA_mut_B12_BD meth 25.6 2.2E+02 0.0048 19.3 7.5 78 4-104 43-121 (122)
372 COG0214 SNZ1 Pyridoxine biosyn 25.4 2.4E+02 0.0051 23.4 5.7 25 52-81 208-232 (296)
373 cd03316 MR_like Mandelate race 25.3 2.4E+02 0.0052 22.3 5.7 37 53-93 241-277 (357)
374 PRK11572 copper homeostasis pr 25.1 2.1E+02 0.0046 22.9 5.4 62 4-84 134-196 (248)
375 PLN02898 HMP-P kinase/thiamin- 24.9 3.3E+02 0.0071 23.1 6.8 59 5-80 404-466 (502)
376 TIGR03234 OH-pyruv-isom hydrox 24.9 3E+02 0.0064 20.5 7.8 66 4-74 90-167 (254)
377 PRK12656 fructose-6-phosphate 24.9 1.9E+02 0.0041 22.6 5.0 28 61-93 113-140 (222)
378 PRK05458 guanosine 5'-monophos 24.7 1.7E+02 0.0038 24.1 5.0 20 59-83 146-165 (326)
379 TIGR00677 fadh2_euk methylenet 24.7 1.8E+02 0.0039 23.2 4.9 14 8-21 158-172 (281)
380 cd03327 MR_like_2 Mandelate ra 24.5 3.7E+02 0.008 21.5 8.1 19 63-81 153-171 (341)
381 PRK11858 aksA trans-homoaconit 24.2 3.4E+02 0.0073 22.4 6.6 70 4-93 206-280 (378)
382 COG3618 Predicted metal-depend 24.2 2.2E+02 0.0048 23.3 5.4 31 50-80 192-228 (279)
383 PLN02540 methylenetetrahydrofo 24.0 1.9E+02 0.0042 25.9 5.4 53 8-73 166-219 (565)
384 PF08442 ATP-grasp_2: ATP-gras 23.9 58 0.0012 24.9 1.9 44 32-81 27-79 (202)
385 PRK12346 transaldolase A; Prov 23.8 3.2E+02 0.0068 22.6 6.3 32 42-81 208-239 (316)
386 PF08827 DUF1805: Domain of un 23.6 1E+02 0.0022 19.8 2.7 18 51-69 14-31 (59)
387 PF00682 HMGL-like: HMGL-like 23.6 3.1E+02 0.0067 20.3 5.8 46 32-80 136-181 (237)
388 COG2185 Sbm Methylmalonyl-CoA 23.4 2.6E+02 0.0057 20.7 5.3 39 34-81 79-117 (143)
389 PRK09427 bifunctional indole-3 23.4 64 0.0014 27.8 2.2 24 54-83 258-281 (454)
390 PRK09140 2-dehydro-3-deoxy-6-p 23.3 3.4E+02 0.0073 20.6 8.2 58 4-83 28-87 (206)
391 cd07940 DRE_TIM_IPMS 2-isoprop 23.2 2.7E+02 0.0058 21.5 5.5 31 49-79 156-186 (268)
392 PLN02979 glycolate oxidase 23.1 1.5E+02 0.0033 25.1 4.4 37 32-83 212-248 (366)
393 COG1391 GlnE Glutamine synthet 22.8 97 0.0021 29.6 3.4 45 32-80 309-356 (963)
394 cd00439 Transaldolase Transald 22.8 1.1E+02 0.0023 24.2 3.2 53 33-90 97-171 (252)
395 PLN02493 probable peroxisomal 22.7 1.7E+02 0.0037 24.6 4.6 38 31-83 212-249 (367)
396 PRK05269 transaldolase B; Prov 22.6 4.4E+02 0.0095 21.7 7.4 32 42-81 209-240 (318)
397 PRK08318 dihydropyrimidine deh 22.6 4.4E+02 0.0095 21.8 7.0 76 4-84 119-198 (420)
398 PRK06512 thiamine-phosphate py 22.4 3.6E+02 0.0078 20.6 6.6 24 52-81 164-187 (221)
399 cd06660 Aldo_ket_red Aldo-keto 22.4 3.4E+02 0.0074 20.3 6.4 69 4-84 35-112 (285)
400 PF00248 Aldo_ket_red: Aldo/ke 22.4 1.4E+02 0.003 22.5 3.7 72 4-84 23-101 (283)
401 PRK14847 hypothetical protein; 22.1 3.8E+02 0.0082 22.3 6.5 70 4-91 258-329 (333)
402 COG0502 BioB Biotin synthase a 22.0 1.5E+02 0.0032 24.9 4.0 65 3-83 92-158 (335)
403 KOG1799|consensus 21.8 1.2E+02 0.0025 26.5 3.5 25 52-81 356-380 (471)
404 PRK07157 acetate kinase; Provi 21.5 1.7E+02 0.0038 25.0 4.5 70 2-71 209-288 (400)
405 PRK12858 tagatose 1,6-diphosph 21.5 4.7E+02 0.01 21.7 7.8 70 3-80 189-268 (340)
406 cd07947 DRE_TIM_Re_CS Clostrid 21.2 1.7E+02 0.0038 23.3 4.2 35 4-41 221-257 (279)
407 cd07938 DRE_TIM_HMGL 3-hydroxy 21.1 4.2E+02 0.009 20.8 7.2 42 38-79 151-192 (274)
408 TIGR02313 HpaI-NOT-DapA 2,4-di 21.0 4.2E+02 0.0091 20.9 7.9 75 6-90 29-109 (294)
409 COG2022 ThiG Uncharacterized e 20.9 1E+02 0.0022 25.2 2.8 41 60-102 78-119 (262)
410 PRK09432 metF 5,10-methylenete 20.8 2.7E+02 0.0059 22.3 5.3 52 8-72 173-225 (296)
411 PRK11072 bifunctional glutamin 20.6 2E+02 0.0043 27.1 4.9 43 32-74 293-336 (943)
412 cd00952 CHBPH_aldolase Trans-o 20.5 4.5E+02 0.0097 20.9 6.9 42 49-91 74-118 (309)
413 PRK11840 bifunctional sulfur c 20.3 1.1E+02 0.0023 25.7 2.9 25 59-83 144-168 (326)
414 cd03315 MLE_like Muconate lact 20.3 3.5E+02 0.0075 20.6 5.6 36 53-92 181-216 (265)
No 1
>PRK05283 deoxyribose-phosphate aldolase; Provisional
Probab=100.00 E-value=3.5e-35 Score=232.01 Aligned_cols=96 Identities=34% Similarity=0.581 Sum_probs=90.8
Q ss_pred hhhHHHhhCCCc-ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969 3 RPRKVAFKGSNF-RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD 81 (106)
Q Consensus 3 ~~~iai~aGadF-KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~ 81 (106)
+|++|+++|||| ||||||++.||| +++|++|++.++++ ..++++||||||||||++||++||++++++||.+
T Consensus 152 a~~~a~~aGADFVKTSTGf~~~gAt-----~edv~lm~~~i~~~--~~~~~vgIKAsGGIrt~~~A~~~i~ag~~~lg~~ 224 (257)
T PRK05283 152 ASEIAIKAGADFIKTSTGKVPVNAT-----LEAARIMLEVIRDM--GVAKTVGFKPAGGVRTAEDAAQYLALADEILGAD 224 (257)
T ss_pred HHHHHHHhCCCEEEcCCCCCCCCCC-----HHHHHHHHHHHHhc--ccCCCeeEEccCCCCCHHHHHHHHHHHHHHhChh
Confidence 789999999999 999999999999 99999999999765 2467899999999999999999999999999999
Q ss_pred ccCCCceeEeccchHHHHHHHHhh
Q psy969 82 WLNKDLFRIGASSLLNNILQELEA 105 (106)
Q Consensus 82 w~~~~~~RiGtSs~~~~l~~~l~~ 105 (106)
|++|++||||+||++++|+++|+.
T Consensus 225 ~~~~~~fR~G~Ssll~~~~~~~~~ 248 (257)
T PRK05283 225 WADARHFRFGASSLLASLLKTLGH 248 (257)
T ss_pred hcCcccEeeehHHhHHHHHHHHhc
Confidence 999999999999999999998864
No 2
>KOG3981|consensus
Probab=99.94 E-value=6.3e-28 Score=192.49 Aligned_cols=97 Identities=46% Similarity=0.859 Sum_probs=93.8
Q ss_pred hhhHHHhhCCCc-ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969 3 RPRKVAFKGSNF-RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD 81 (106)
Q Consensus 3 ~~~iai~aGadF-KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~ 81 (106)
++-+++.+|+|| |||||+..++|| ++....|+.+|++|+.+++++||+|++|||||.+||+.|+.+++++||.+
T Consensus 213 Asm~~mmAGsDFIKTSTGKEtVNAT-----lpVa~VM~~AI~~f~~~Tg~kvGfKPAGGiktv~dalaw~~LVke~LGde 287 (326)
T KOG3981|consen 213 ASMASMMAGSDFIKTSTGKETVNAT-----LPVAYVMCTAIKRFHELTGKKVGFKPAGGIKTVDDALAWVALVKEILGDE 287 (326)
T ss_pred HHHHHHHhcccceecCCccccccee-----chhHHHHHHHHHHHHHHhCCeeccccCCCcccHHHHHHHHHHHHHHhhhh
Confidence 567899999999 999999999999 99999999999999999999999999999999999999999999999999
Q ss_pred ccCCCceeEeccchHHHHHHHHh
Q psy969 82 WLNKDLFRIGASSLLNNILQELE 104 (106)
Q Consensus 82 w~~~~~~RiGtSs~~~~l~~~l~ 104 (106)
|++|..||||+|++++++++.|-
T Consensus 288 WL~PelFRiGAS~LLdDier~~~ 310 (326)
T KOG3981|consen 288 WLNPELFRIGASSLLDDIERGLR 310 (326)
T ss_pred hcCHHHhhcchHHhHHHHHHHHH
Confidence 99999999999999999988764
No 3
>COG0274 DeoC Deoxyribose-phosphate aldolase [Nucleotide transport and metabolism]
Probab=99.94 E-value=5.8e-27 Score=183.00 Aligned_cols=75 Identities=28% Similarity=0.354 Sum_probs=69.9
Q ss_pred hhhHHHhhCCCc-ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969 3 RPRKVAFKGSNF-RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD 81 (106)
Q Consensus 3 ~~~iai~aGadF-KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~ 81 (106)
+|++|+++|||| ||||||.+.||| +|++++|++.+ ++++||||||||||++||+.|++ +|+
T Consensus 145 A~~i~~~aGAdFVKTSTGf~~~gAT-----~edv~lM~~~v-------g~~vgvKaSGGIrt~eda~~~i~-----aga- 206 (228)
T COG0274 145 ACEIAIEAGADFVKTSTGFSAGGAT-----VEDVKLMKETV-------GGRVGVKASGGIRTAEDAKAMIE-----AGA- 206 (228)
T ss_pred HHHHHHHhCCCEEEcCCCCCCCCCC-----HHHHHHHHHHh-------ccCceeeccCCcCCHHHHHHHHH-----HhH-
Confidence 799999999999 999999999999 99999999986 79999999999999999999999 688
Q ss_pred ccCCCceeEeccchHHHHHH
Q psy969 82 WLNKDLFRIGASSLLNNILQ 101 (106)
Q Consensus 82 w~~~~~~RiGtSs~~~~l~~ 101 (106)
+|||+|++++++.+
T Consensus 207 ------~RiGtSs~v~i~~~ 220 (228)
T COG0274 207 ------TRIGTSSGVAILEG 220 (228)
T ss_pred ------HHhccccHHHHHHh
Confidence 79999999955443
No 4
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=99.89 E-value=6.8e-24 Score=162.94 Aligned_cols=73 Identities=32% Similarity=0.448 Sum_probs=68.5
Q ss_pred hhhHHHhhCCCc-ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969 3 RPRKVAFKGSNF-RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD 81 (106)
Q Consensus 3 ~~~iai~aGadF-KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~ 81 (106)
+|++++++|||| ||||||.+.|+| ++++++|++.+ +++++||+||||||++|+++|++ +|++
T Consensus 137 a~~ia~eaGADfvKTsTGf~~~gat-----~~dv~~m~~~v-------~~~v~IKaaGGirt~~~a~~~i~-----aGa~ 199 (211)
T TIGR00126 137 ACEICIDAGADFVKTSTGFGAGGAT-----VEDVRLMRNTV-------GDTIGVKASGGVRTAEDAIAMIE-----AGAS 199 (211)
T ss_pred HHHHHHHhCCCEEEeCCCCCCCCCC-----HHHHHHHHHHh-------ccCCeEEEeCCCCCHHHHHHHHH-----HhhH
Confidence 689999999999 999999999999 99999999886 46899999999999999999999 6995
Q ss_pred ccCCCceeEeccchHHHH
Q psy969 82 WLNKDLFRIGASSLLNNI 99 (106)
Q Consensus 82 w~~~~~~RiGtSs~~~~l 99 (106)
|||+|++.+++
T Consensus 200 -------riGts~~~~i~ 210 (211)
T TIGR00126 200 -------RIGASAGVAII 210 (211)
T ss_pred -------HhCcchHHHHh
Confidence 99999999875
No 5
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=99.89 E-value=4.4e-23 Score=159.10 Aligned_cols=75 Identities=25% Similarity=0.397 Sum_probs=70.1
Q ss_pred hhhHHHhhCCCc-ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969 3 RPRKVAFKGSNF-RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD 81 (106)
Q Consensus 3 ~~~iai~aGadF-KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~ 81 (106)
+|++|+++|+|| ||||||.+.|+| +++|++|++.+ +++++||+||||||++||++|++ +|++
T Consensus 141 a~~~~~~agadfIKTsTG~~~~gat-----~~~v~~m~~~~-------~~~~~IKasGGIrt~~~a~~~i~-----aGA~ 203 (221)
T PRK00507 141 ACEIAKEAGADFVKTSTGFSTGGAT-----VEDVKLMRETV-------GPRVGVKASGGIRTLEDALAMIE-----AGAT 203 (221)
T ss_pred HHHHHHHhCCCEEEcCCCCCCCCCC-----HHHHHHHHHHh-------CCCceEEeeCCcCCHHHHHHHHH-----cCcc
Confidence 689999999999 999999999999 99999999875 68999999999999999999999 7994
Q ss_pred ccCCCceeEeccchHHHHHH
Q psy969 82 WLNKDLFRIGASSLLNNILQ 101 (106)
Q Consensus 82 w~~~~~~RiGtSs~~~~l~~ 101 (106)
|||||++.+++.+
T Consensus 204 -------riGtS~~~~i~~~ 216 (221)
T PRK00507 204 -------RLGTSAGVAILKG 216 (221)
T ss_pred -------eEccCcHHHHHhc
Confidence 9999999998754
No 6
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=99.84 E-value=2.7e-21 Score=145.16 Aligned_cols=67 Identities=36% Similarity=0.550 Sum_probs=63.0
Q ss_pred hhhHHHhhCCCc-ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969 3 RPRKVAFKGSNF-RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD 81 (106)
Q Consensus 3 ~~~iai~aGadF-KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~ 81 (106)
+||+|+++|||| ||||||.+.++| ++++++|++.+ +.+++||+||||||++|+++|++ +|++
T Consensus 136 a~ria~e~GaD~IKTsTG~~~~~at-----~~~v~~~~~~~-------~~~v~ik~aGGikt~~~~l~~~~-----~g~~ 198 (203)
T cd00959 136 ACEIAIEAGADFIKTSTGFGPGGAT-----VEDVKLMKEAV-------GGRVGVKAAGGIRTLEDALAMIE-----AGAT 198 (203)
T ss_pred HHHHHHHhCCCEEEcCCCCCCCCCC-----HHHHHHHHHHh-------CCCceEEEeCCCCCHHHHHHHHH-----hChh
Confidence 689999999999 999999999999 99999999986 36799999999999999999999 6994
Q ss_pred ccCCCceeEecc
Q psy969 82 WLNKDLFRIGAS 93 (106)
Q Consensus 82 w~~~~~~RiGtS 93 (106)
|||+|
T Consensus 199 -------riG~s 203 (203)
T cd00959 199 -------RIGTS 203 (203)
T ss_pred -------hccCC
Confidence 99997
No 7
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=99.67 E-value=6e-17 Score=123.26 Aligned_cols=78 Identities=33% Similarity=0.422 Sum_probs=68.5
Q ss_pred hhhHHHhhCCCc-ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCC------CCHHHHHHHHHHHH
Q psy969 3 RPRKVAFKGSNF-RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGI------STFEDSVRWIYLVL 75 (106)
Q Consensus 3 ~~~iai~aGadF-KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGI------rt~~~a~~~i~l~~ 75 (106)
+|++++++|||| |||||+. .++| ++++++|++.++.+. .+++++||+|||| |++++|.++++
T Consensus 151 a~ria~e~GaD~vKt~tg~~-~~~t-----~~~~~~~~~~~~~~~--~p~~~~Vk~sGGi~~~~~~~~l~~a~~~i~--- 219 (236)
T PF01791_consen 151 AARIAAELGADFVKTSTGKP-VGAT-----PEDVELMRKAVEAAP--VPGKVGVKASGGIDAEDFLRTLEDALEFIE--- 219 (236)
T ss_dssp HHHHHHHTT-SEEEEE-SSS-SCSH-----HHHHHHHHHHHHTHS--STTTSEEEEESSSSHHHHHHSHHHHHHHHH---
T ss_pred HHHHHHHhCCCEEEecCCcc-cccc-----HHHHHHHHHHHHhcC--CCcceEEEEeCCCChHHHHHHHHHHHHHHH---
Confidence 689999999999 9999987 9999 999999999987541 3478999999999 99999999999
Q ss_pred hhCCCCccCCCceeEeccchHHHHH
Q psy969 76 IMLGPDWLNKDLFRIGASSLLNNIL 100 (106)
Q Consensus 76 ~~lGa~w~~~~~~RiGtSs~~~~l~ 100 (106)
+|++ |+|+|++.+++.
T Consensus 220 --aGa~-------~~G~~~Gr~i~q 235 (236)
T PF01791_consen 220 --AGAD-------RIGTSSGRNIWQ 235 (236)
T ss_dssp --TTHS-------EEEEEEHHHHHT
T ss_pred --cCCh-------hHHHHHHHHHHc
Confidence 7995 999999998764
No 8
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=98.59 E-value=1.4e-07 Score=73.70 Aligned_cols=69 Identities=17% Similarity=0.106 Sum_probs=51.1
Q ss_pred hhhHHHhhCCCc-ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCC--CHHHHHHHHHHHHhhCC
Q psy969 3 RPRKVAFKGSNF-RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGIS--TFEDSVRWIYLVLIMLG 79 (106)
Q Consensus 3 ~~~iai~aGadF-KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIr--t~~~a~~~i~l~~~~lG 79 (106)
+++++.+.|||| ||+ |. . ++++|.+.++ ..++.||++|||+ |++++++++..+.+ +|
T Consensus 165 a~~~a~e~GAD~vKt~--~~----~-------~~~~l~~~~~------~~~ipV~a~GGi~~~~~~~~l~~v~~~~~-aG 224 (267)
T PRK07226 165 AARVAAELGADIVKTN--YT----G-------DPESFREVVE------GCPVPVVIAGGPKTDTDREFLEMVRDAME-AG 224 (267)
T ss_pred HHHHHHHHCCCEEeeC--CC----C-------CHHHHHHHHH------hCCCCEEEEeCCCCCCHHHHHHHHHHHHH-cC
Confidence 478999999999 998 42 1 3566666543 2468999999999 99999999854433 68
Q ss_pred CCccCCCceeEeccchHHHHH
Q psy969 80 PDWLNKDLFRIGASSLLNNIL 100 (106)
Q Consensus 80 a~w~~~~~~RiGtSs~~~~l~ 100 (106)
+ . |+|.+.+++.
T Consensus 225 A-------~--Gis~gr~i~~ 236 (267)
T PRK07226 225 A-------A--GVAVGRNVFQ 236 (267)
T ss_pred C-------c--EEehhhhhhc
Confidence 7 2 7877776653
No 9
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=98.06 E-value=7.8e-06 Score=63.39 Aligned_cols=57 Identities=19% Similarity=0.084 Sum_probs=40.4
Q ss_pred hhHHHhhCCCc-ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCC--CHHHHHHHHHHHHhhCCC
Q psy969 4 PRKVAFKGSNF-RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGIS--TFEDSVRWIYLVLIMLGP 80 (106)
Q Consensus 4 ~~iai~aGadF-KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIr--t~~~a~~~i~l~~~~lGa 80 (106)
++.+.++|||| ||+. . . +++.|.+..+ ..++.||++|||+ |++++++++..+.+ +|+
T Consensus 162 ~~~a~~~GADyikt~~--~---~--------~~~~l~~~~~------~~~iPVva~GGi~~~~~~~~~~~i~~~~~-aGa 221 (258)
T TIGR01949 162 ARLGAELGADIVKTPY--T---G--------DIDSFRDVVK------GCPAPVVVAGGPKTNSDREFLQMIKDAME-AGA 221 (258)
T ss_pred HHHHHHHCCCEEeccC--C---C--------CHHHHHHHHH------hCCCcEEEecCCCCCCHHHHHHHHHHHHH-cCC
Confidence 67889999999 9973 1 1 3444554432 2458899999999 88999888843322 688
No 10
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=97.77 E-value=0.00013 Score=51.91 Aligned_cols=61 Identities=36% Similarity=0.531 Sum_probs=49.5
Q ss_pred hhHHHhhCCCc-ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969 4 PRKVAFKGSNF-RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD 81 (106)
Q Consensus 4 ~~iai~aGadF-KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~ 81 (106)
++++.+.|+|+ |+++|+.+.+.+ .+.++.+++.. ++++.|++.||+++++++.+++. +|++
T Consensus 135 ~~~~~~~g~~~iK~~~~~~~~~~~-----~~~~~~i~~~~-------~~~~~v~~~gg~~~~~~~~~~~~-----~Ga~ 196 (201)
T cd00945 135 ARIAAEAGADFIKTSTGFGGGGAT-----VEDVKLMKEAV-------GGRVGVKAAGGIKTLEDALAAIE-----AGAD 196 (201)
T ss_pred HHHHHHhCCCEEEeCCCCCCCCCC-----HHHHHHHHHhc-------ccCCcEEEECCCCCHHHHHHHHH-----hccc
Confidence 45667899999 999998777777 77777766542 44689999999999999999999 6874
No 11
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=97.45 E-value=0.00025 Score=56.97 Aligned_cols=35 Identities=37% Similarity=0.515 Sum_probs=28.0
Q ss_pred HHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969 42 IKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD 81 (106)
Q Consensus 42 i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~ 81 (106)
++++++..++++-|.++|||+|.+||.+++. +|++
T Consensus 270 v~~l~~~~~~~ipIi~~GGI~t~~da~e~l~-----aGAd 304 (327)
T cd04738 270 LRELYKLTGGKIPIIGVGGISSGEDAYEKIR-----AGAS 304 (327)
T ss_pred HHHHHHHhCCCCcEEEECCCCCHHHHHHHHH-----cCCC
Confidence 3333444566799999999999999999998 6985
No 12
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=97.06 E-value=0.0017 Score=52.72 Aligned_cols=73 Identities=16% Similarity=0.118 Sum_probs=45.1
Q ss_pred hhHHHhhCCCc-ccCCCCCCC-CC-------CCCCCC-chHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHH
Q psy969 4 PRKVAFKGSNF-RTLHGRGPD-ST-------SYGNVC-NTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYL 73 (106)
Q Consensus 4 ~~iai~aGadF-KTSTG~~~~-ga-------t~~~~~-~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l 73 (106)
++.+.++|+|+ ..+.++... +. .++..+ +..-.+-.+.++++++..++++-|.++|||+|.+||.+++.
T Consensus 231 a~~l~~~Gadgi~~~nt~~~~~~~~~~~~~~~~gg~SG~~~~~~~l~~v~~l~~~~~~~ipIig~GGI~s~eda~e~l~- 309 (344)
T PRK05286 231 ADLALEHGIDGVIATNTTLSRDGLKGLPNADEAGGLSGRPLFERSTEVIRRLYKELGGRLPIIGVGGIDSAEDAYEKIR- 309 (344)
T ss_pred HHHHHHhCCcEEEEeCCccccccccccccCCCCCCcccHHHHHHHHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHH-
Confidence 46678899999 655543110 00 000000 11112233445555555666799999999999999999998
Q ss_pred HHhhCCCC
Q psy969 74 VLIMLGPD 81 (106)
Q Consensus 74 ~~~~lGa~ 81 (106)
+|++
T Consensus 310 ----aGAd 313 (344)
T PRK05286 310 ----AGAS 313 (344)
T ss_pred ----cCCC
Confidence 6986
No 13
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=96.99 E-value=0.0034 Score=47.42 Aligned_cols=58 Identities=17% Similarity=0.144 Sum_probs=36.6
Q ss_pred hhHHHhhCCCc-ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCC--CCHHHHHHHHHHHHhhCCC
Q psy969 4 PRKVAFKGSNF-RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGI--STFEDSVRWIYLVLIMLGP 80 (106)
Q Consensus 4 ~~iai~aGadF-KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGI--rt~~~a~~~i~l~~~~lGa 80 (106)
++++.++|||| ||+ |. .. ++..+.+++. -++.|+++||| +|.+++++.+..+.+ .|+
T Consensus 149 ~~~a~~~GaD~Ik~~--~~---~~-----~~~~~~i~~~---------~~~pvv~~GG~~~~~~~~~l~~~~~~~~-~Ga 208 (235)
T cd00958 149 ARIGAELGADIVKTK--YT---GD-----AESFKEVVEG---------CPVPVVIAGGPKKDSEEEFLKMVYDAME-AGA 208 (235)
T ss_pred HHHHHHHCCCEEEec--CC---CC-----HHHHHHHHhc---------CCCCEEEeCCCCCCCHHHHHHHHHHHHH-cCC
Confidence 67899999999 995 21 13 3444443332 23558999998 788775555443332 788
Q ss_pred C
Q psy969 81 D 81 (106)
Q Consensus 81 ~ 81 (106)
+
T Consensus 209 ~ 209 (235)
T cd00958 209 A 209 (235)
T ss_pred c
Confidence 4
No 14
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=96.59 E-value=0.0087 Score=46.42 Aligned_cols=35 Identities=20% Similarity=0.288 Sum_probs=27.5
Q ss_pred HHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969 42 IKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD 81 (106)
Q Consensus 42 i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~ 81 (106)
+++.++..+.++-|-++|||+|.+++.+++. +|++
T Consensus 233 v~~i~~~~~~~ipiia~GGI~~~~da~~~l~-----~GAd 267 (289)
T cd02810 233 VARLAARLQLDIPIIGVGGIDSGEDVLEMLM-----AGAS 267 (289)
T ss_pred HHHHHHhcCCCCCEEEECCCCCHHHHHHHHH-----cCcc
Confidence 3344444544689999999999999999998 6885
No 15
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=96.08 E-value=0.035 Score=43.97 Aligned_cols=35 Identities=20% Similarity=0.533 Sum_probs=28.0
Q ss_pred HHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969 42 IKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD 81 (106)
Q Consensus 42 i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~ 81 (106)
+++.++..++++-|=+.|||+|.+|+.+++. +|++
T Consensus 242 v~~~~~~~~~~ipIig~GGI~~~~da~~~l~-----aGA~ 276 (299)
T cd02940 242 VSQIARAPEPGLPISGIGGIESWEDAAEFLL-----LGAS 276 (299)
T ss_pred HHHHHHhcCCCCcEEEECCCCCHHHHHHHHH-----cCCC
Confidence 3344444556788999999999999999998 7996
No 16
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=95.89 E-value=0.032 Score=44.79 Aligned_cols=64 Identities=20% Similarity=0.213 Sum_probs=47.3
Q ss_pred hHHHhhCCCc-ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCCcc
Q psy969 5 RKVAFKGSNF-RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWL 83 (106)
Q Consensus 5 ~iai~aGadF-KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~w~ 83 (106)
..|+++|+|+ .- .+-+ ++.++...+.++. ..+++.|=+|||| |.+++.+|.+ +|+|
T Consensus 196 ~~A~~~GaDiI~L------Dn~~-----~e~l~~~v~~~~~----~~~~~~ieAsGgI-t~~ni~~ya~-----~GvD-- 252 (273)
T PRK05848 196 KNAMNAGADIVMC------DNMS-----VEEIKEVVAYRNA----NYPHVLLEASGNI-TLENINAYAK-----SGVD-- 252 (273)
T ss_pred HHHHHcCCCEEEE------CCCC-----HHHHHHHHHHhhc----cCCCeEEEEECCC-CHHHHHHHHH-----cCCC--
Confidence 4678899999 72 2234 7776666654421 2367889999999 9999999999 7997
Q ss_pred CCCceeEeccchH
Q psy969 84 NKDLFRIGASSLL 96 (106)
Q Consensus 84 ~~~~~RiGtSs~~ 96 (106)
+|.++++.
T Consensus 253 -----~IsvG~l~ 260 (273)
T PRK05848 253 -----AISSGSLI 260 (273)
T ss_pred -----EEEeChhh
Confidence 77776643
No 17
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=95.69 E-value=0.035 Score=47.61 Aligned_cols=73 Identities=16% Similarity=0.180 Sum_probs=47.1
Q ss_pred hhHHHhhCCCc-ccCCCCCCCCCC-----CCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhh
Q psy969 4 PRKVAFKGSNF-RTLHGRGPDSTS-----YGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIM 77 (106)
Q Consensus 4 ~~iai~aGadF-KTSTG~~~~gat-----~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~ 77 (106)
++.++++|||| |.+.|-+...+| -+-|-..++....+..++ ..+-|=+.|||++..|+..-+.
T Consensus 296 a~~~~~aGad~I~vg~g~Gs~~~t~~~~~~g~p~~~ai~~~~~~~~~------~~v~vIadGGi~~~~di~kAla----- 364 (495)
T PTZ00314 296 AKNLIDAGADGLRIGMGSGSICITQEVCAVGRPQASAVYHVARYARE------RGVPCIADGGIKNSGDICKALA----- 364 (495)
T ss_pred HHHHHHcCCCEEEECCcCCcccccchhccCCCChHHHHHHHHHHHhh------cCCeEEecCCCCCHHHHHHHHH-----
Confidence 56789999999 976543322222 112224444444444432 3477889999999999999999
Q ss_pred CCCCccCCCc
Q psy969 78 LGPDWLNKDL 87 (106)
Q Consensus 78 lGa~w~~~~~ 87 (106)
+|++++--+.
T Consensus 365 ~GA~~Vm~G~ 374 (495)
T PTZ00314 365 LGADCVMLGS 374 (495)
T ss_pred cCCCEEEECc
Confidence 7997554333
No 18
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=95.51 E-value=0.079 Score=42.00 Aligned_cols=64 Identities=19% Similarity=0.182 Sum_probs=41.3
Q ss_pred hhHHHhhCCCc-ccC-CCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969 4 PRKVAFKGSNF-RTL-HGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD 81 (106)
Q Consensus 4 ~~iai~aGadF-KTS-TG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~ 81 (106)
++.+.++|+|+ -.+ +|-...... +.....+.+..+. .++++-|=++|||++..|+.+++. +|++
T Consensus 186 a~~a~~~G~d~I~v~~~gG~~~~~g-----~~~~~~l~~i~~~----~~~~ipvia~GGI~~~~d~~kal~-----lGAd 251 (299)
T cd02809 186 ALRAVDAGADGIVVSNHGGRQLDGA-----PATIDALPEIVAA----VGGRIEVLLDGGIRRGTDVLKALA-----LGAD 251 (299)
T ss_pred HHHHHHCCCCEEEEcCCCCCCCCCC-----cCHHHHHHHHHHH----hcCCCeEEEeCCCCCHHHHHHHHH-----cCCC
Confidence 46788999999 443 331111111 2334444433222 344688999999999999999998 7986
No 19
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=95.42 E-value=0.095 Score=42.27 Aligned_cols=25 Identities=36% Similarity=0.698 Sum_probs=22.9
Q ss_pred ceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969 52 KIGLKPAGGISTFEDSVRWIYLVLIMLGPD 81 (106)
Q Consensus 52 ~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~ 81 (106)
++-|=+.|||+|.+||.+++. +|++
T Consensus 237 ~ipIig~GGI~s~~Da~e~l~-----aGA~ 261 (325)
T cd04739 237 KASLAASGGVHDAEDVVKYLL-----AGAD 261 (325)
T ss_pred CCCEEEECCCCCHHHHHHHHH-----cCCC
Confidence 588889999999999999998 7996
No 20
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=95.32 E-value=0.11 Score=40.37 Aligned_cols=68 Identities=19% Similarity=0.223 Sum_probs=45.9
Q ss_pred hHHHhhCCCc--ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCCc
Q psy969 5 RKVAFKGSNF--RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDW 82 (106)
Q Consensus 5 ~iai~aGadF--KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~w 82 (106)
..|.++|+|| -|-.||.+.... =..|.+++.+..+ ..+-|=+=|+|.|+++|.+.++ +|+.
T Consensus 106 ~~A~~~G~D~I~TTLsGYT~~t~~----~~pD~~lv~~l~~-------~~~pvIaEGri~tpe~a~~al~-----~GA~- 168 (192)
T PF04131_consen 106 INAAELGFDIIGTTLSGYTPYTKG----DGPDFELVRELVQ-------ADVPVIAEGRIHTPEQAAKALE-----LGAH- 168 (192)
T ss_dssp HHHHHTT-SEEE-TTTTSSTTSTT----SSHHHHHHHHHHH-------TTSEEEEESS--SHHHHHHHHH-----TT-S-
T ss_pred HHHHHcCCCEEEcccccCCCCCCC----CCCCHHHHHHHHh-------CCCcEeecCCCCCHHHHHHHHh-----cCCe-
Confidence 4578899999 889998764332 1568888876542 2566889999999999999999 7984
Q ss_pred cCCCceeEecc
Q psy969 83 LNKDLFRIGAS 93 (106)
Q Consensus 83 ~~~~~~RiGtS 93 (106)
..-+|+.
T Consensus 169 ----aVVVGsA 175 (192)
T PF04131_consen 169 ----AVVVGSA 175 (192)
T ss_dssp ----EEEE-HH
T ss_pred ----EEEECcc
Confidence 4456664
No 21
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=95.26 E-value=0.081 Score=43.11 Aligned_cols=38 Identities=21% Similarity=0.308 Sum_probs=31.4
Q ss_pred HHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969 39 CSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD 81 (106)
Q Consensus 39 ~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~ 81 (106)
++.++++++..++++-|=++|||.|.+||.+++. +|++
T Consensus 275 l~~v~~~~~~~~~~ipiig~GGI~~~~da~e~l~-----aGA~ 312 (335)
T TIGR01036 275 TEIIRRLYAELQGRLPIIGVGGISSAQDALEKIR-----AGAS 312 (335)
T ss_pred HHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHH-----cCCc
Confidence 4455566666777899999999999999999999 7985
No 22
>PF01180 DHO_dh: Dihydroorotate dehydrogenase; InterPro: IPR012135 Dihydroorotate dehydrogenase (DHOD), also known as dihydroorotate oxidase, catalyses the fourth step in de novo pyrimidine biosynthesis, the stereospecific oxidation of (S)-dihydroorotate to orotate, which is the only redox reaction in this pathway. DHODs can be divided into two mains classes: class 1 cytosolic enzymes found primarily in Gram-positive bacteria, and class 2 membrane-associated enzymes found primarily in eukaryotic mitochondria and Gram-negative bacteria []. The class 1 DHODs can be further divided into subclasses 1A and 1B, which differ in their structural organisation and use of electron acceptors. The 1A enzyme is a homodimer of two PyrD subunits where each subunit forms a TIM barrel fold with a bound FMN cofactor located near the top of the barrel []. Fumarate is the natural electron acceptor for this enzyme. The 1B enzyme, in contrast is a heterotetramer composed of a central, FMN-containing, PyrD homodimer resembling the 1A homodimer, and two additional PyrK subunits which contain FAD and a 2Fe-2S cluster []. These additional groups allow the enzyme to use NAD(+) as its natural electron acceptor. The class 2 membrane-associated enzymes are monomers which have the FMN-containing TIM barrel domain found in the class 1 PyrD subunit, and an additional N-terminal alpha helical domain [, ]. These enzymes use respiratory quinones as the physiological electron acceptor. This entry represents the FMN-binding subunit common to all classes of dihydroorotate dehydrogenase.; GO: 0004152 dihydroorotate dehydrogenase activity, 0006222 UMP biosynthetic process, 0055114 oxidation-reduction process; PDB: 3GYE_A 3GZ3_A 3MHU_B 3MJY_A 3TQ0_A 2B4G_C 1EP3_A 1EP2_A 1EP1_A 3I6R_A ....
Probab=95.20 E-value=0.056 Score=42.43 Aligned_cols=40 Identities=25% Similarity=0.463 Sum_probs=31.2
Q ss_pred HHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969 37 IMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD 81 (106)
Q Consensus 37 lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~ 81 (106)
+-++.+++.++..++++-|=++|||.|.+||.+|+. +||+
T Consensus 229 ~aL~~V~~~~~~~~~~i~Iig~GGI~s~~da~e~l~-----aGA~ 268 (295)
T PF01180_consen 229 IALRWVRELRKALGQDIPIIGVGGIHSGEDAIEFLM-----AGAS 268 (295)
T ss_dssp HHHHHHHHHHHHTTTSSEEEEESS--SHHHHHHHHH-----HTES
T ss_pred HHHHHHHHHHhccccceEEEEeCCcCCHHHHHHHHH-----hCCC
Confidence 344556666777778899999999999999999999 6985
No 23
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=95.13 E-value=0.052 Score=43.15 Aligned_cols=61 Identities=18% Similarity=0.232 Sum_probs=38.4
Q ss_pred HHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCCccCCCceeEe-ccchHHHHHHHHhh
Q psy969 40 SAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIG-ASSLLNNILQELEA 105 (106)
Q Consensus 40 ~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~w~~~~~~RiG-tSs~~~~l~~~l~~ 105 (106)
+.+++.++..+.++-|=++|||.|.+||++++. +|++-+.-.+--+. --.....+.++|+.
T Consensus 231 ~~v~~~~~~~~~~ipIig~GGI~s~~da~e~l~-----aGA~~Vqv~ta~~~~gp~~~~~i~~~L~~ 292 (294)
T cd04741 231 GNVRTFRRLLPSEIQIIGVGGVLDGRGAFRMRL-----AGASAVQVGTALGKEGPKVFARIEKELED 292 (294)
T ss_pred HHHHHHHHhcCCCCCEEEeCCCCCHHHHHHHHH-----cCCCceeEchhhhhcCchHHHHHHHHHHh
Confidence 334444555666788999999999999999998 79963322222221 12234455556553
No 24
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=95.10 E-value=0.11 Score=41.71 Aligned_cols=35 Identities=20% Similarity=0.280 Sum_probs=26.8
Q ss_pred HHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969 40 SAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD 81 (106)
Q Consensus 40 ~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~ 81 (106)
+.+.+.++.. ++-|=++|||+|.+||.+++. +|++
T Consensus 229 ~~v~~~~~~~--~ipIig~GGI~s~~Da~e~l~-----aGA~ 263 (334)
T PRK07565 229 RWIAILSGRV--GADLAATTGVHDAEDVIKMLL-----AGAD 263 (334)
T ss_pred HHHHHHHhhc--CCCEEEECCCCCHHHHHHHHH-----cCCC
Confidence 3444444433 577889999999999999998 7986
No 25
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=95.07 E-value=0.082 Score=39.14 Aligned_cols=64 Identities=16% Similarity=0.355 Sum_probs=43.5
Q ss_pred hHHHhhCCCc-ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCCcc
Q psy969 5 RKVAFKGSNF-RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWL 83 (106)
Q Consensus 5 ~iai~aGadF-KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~w~ 83 (106)
..|.++|+|| |- |-..... ++-++.+++. -+.+-+=++||| |.+.+.+|++ +|+
T Consensus 111 ~~A~~~Gad~i~~---~p~~~~g-----~~~~~~l~~~--------~~~~p~~a~GGI-~~~n~~~~~~-----~G~--- 165 (190)
T cd00452 111 MQALELGADIVKL---FPAEAVG-----PAYIKALKGP--------FPQVRFMPTGGV-SLDNAAEWLA-----AGV--- 165 (190)
T ss_pred HHHHHCCCCEEEE---cCCcccC-----HHHHHHHHhh--------CCCCeEEEeCCC-CHHHHHHHHH-----CCC---
Confidence 4577899999 85 2111112 3333333321 135889999999 9999999999 798
Q ss_pred CCCceeEeccchHH
Q psy969 84 NKDLFRIGASSLLN 97 (106)
Q Consensus 84 ~~~~~RiGtSs~~~ 97 (106)
..++.++.+.
T Consensus 166 ----~~v~v~s~i~ 175 (190)
T cd00452 166 ----VAVGGGSLLP 175 (190)
T ss_pred ----EEEEEchhcc
Confidence 5888888753
No 26
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=94.99 E-value=0.088 Score=44.18 Aligned_cols=66 Identities=17% Similarity=0.153 Sum_probs=44.2
Q ss_pred hhHHHhhCCCc-ccC-CCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969 4 PRKVAFKGSNF-RTL-HGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD 81 (106)
Q Consensus 4 ~~iai~aGadF-KTS-TG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~ 81 (106)
++.++++|+|+ .-| .|=...... +..+..+.+..+ .+++++-|=++||||+-.|+.+-+. ||++
T Consensus 267 A~~a~~~G~d~I~vsnhGGr~~d~~-----~~t~~~L~ei~~----~~~~~~~vi~dGGIr~G~Dv~KALa-----LGA~ 332 (383)
T cd03332 267 ARRAVEAGVDGVVVSNHGGRQVDGS-----IAALDALPEIVE----AVGDRLTVLFDSGVRTGADIMKALA-----LGAK 332 (383)
T ss_pred HHHHHHCCCCEEEEcCCCCcCCCCC-----cCHHHHHHHHHH----HhcCCCeEEEeCCcCcHHHHHHHHH-----cCCC
Confidence 46789999999 444 331111112 344455444432 2466788999999999999999999 7997
Q ss_pred cc
Q psy969 82 WL 83 (106)
Q Consensus 82 w~ 83 (106)
.+
T Consensus 333 ~v 334 (383)
T cd03332 333 AV 334 (383)
T ss_pred EE
Confidence 43
No 27
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=94.93 E-value=0.11 Score=40.85 Aligned_cols=63 Identities=17% Similarity=0.052 Sum_probs=37.8
Q ss_pred hhHHHhhCCCc-ccCCCCCCCCCCCC----CCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHH
Q psy969 4 PRKVAFKGSNF-RTLHGRGPDSTSYG----NVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIY 72 (106)
Q Consensus 4 ~~iai~aGadF-KTSTG~~~~gat~~----~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~ 72 (106)
++.+.+.|+|| ..+.|+........ .+-......+. .++ +.. ++-|-+.|||+|.+++.++++
T Consensus 234 a~~l~~~G~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~-~ir---~~~--~iPVi~~Ggi~t~~~a~~~l~ 301 (327)
T cd02803 234 AKALEEAGVDALHVSGGSYESPPPIIPPPYVPEGYFLELAE-KIK---KAV--KIPVIAVGGIRDPEVAEEILA 301 (327)
T ss_pred HHHHHHcCCCEEEeCCCCCcccccccCCCCCCcchhHHHHH-HHH---HHC--CCCEEEeCCCCCHHHHHHHHH
Confidence 45667789999 88888643211100 00011222222 222 222 477899999999999999999
No 28
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=94.90 E-value=0.12 Score=44.60 Aligned_cols=76 Identities=22% Similarity=0.241 Sum_probs=52.6
Q ss_pred hhhHHHhhCCCc-ccCCCCCCCCCCC-----CCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHh
Q psy969 3 RPRKVAFKGSNF-RTLHGRGPDSTSY-----GNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLI 76 (106)
Q Consensus 3 ~~~iai~aGadF-KTSTG~~~~gat~-----~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~ 76 (106)
.++.++++|||| |-+-|=+..-+|- +-|=..++....++.++|.+..+.++-|=+-||||+.-|...-+.
T Consensus 297 ~a~~li~aGAd~I~vg~g~Gs~c~tr~~~~~g~~~~~ai~~~~~a~~~~~~~~g~~~~viadgGir~~gdi~KAla---- 372 (502)
T PRK07107 297 GFRYLAEAGADFVKVGIGGGSICITREQKGIGRGQATALIEVAKARDEYFEETGVYIPICSDGGIVYDYHMTLALA---- 372 (502)
T ss_pred HHHHHHHcCCCEEEECCCCCcCcccccccCCCccHHHHHHHHHHHHHHHHhhcCCcceEEEcCCCCchhHHHHHHH----
Confidence 356789999999 9877644222221 111134566666666556555676788999999999999888888
Q ss_pred hCCCCcc
Q psy969 77 MLGPDWL 83 (106)
Q Consensus 77 ~lGa~w~ 83 (106)
+|++++
T Consensus 373 -~GA~~v 378 (502)
T PRK07107 373 -MGADFI 378 (502)
T ss_pred -cCCCee
Confidence 798754
No 29
>PLN02826 dihydroorotate dehydrogenase
Probab=94.82 E-value=0.17 Score=42.68 Aligned_cols=36 Identities=31% Similarity=0.455 Sum_probs=29.9
Q ss_pred HHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969 41 AIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD 81 (106)
Q Consensus 41 ~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~ 81 (106)
.+++.++..++++-|=..|||.|.+||.++|. +||+
T Consensus 330 ~v~~l~~~~~~~ipIIgvGGI~sg~Da~e~i~-----AGAs 365 (409)
T PLN02826 330 VLREMYRLTRGKIPLVGCGGVSSGEDAYKKIR-----AGAS 365 (409)
T ss_pred HHHHHHHHhCCCCcEEEECCCCCHHHHHHHHH-----hCCC
Confidence 34445555677899999999999999999999 7996
No 30
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=94.66 E-value=0.1 Score=44.15 Aligned_cols=71 Identities=24% Similarity=0.222 Sum_probs=45.2
Q ss_pred hhHHHhhCCCc-ccCCCCCCCCC--C-----CCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHH
Q psy969 4 PRKVAFKGSNF-RTLHGRGPDST--S-----YGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVL 75 (106)
Q Consensus 4 ~~iai~aGadF-KTSTG~~~~ga--t-----~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~ 75 (106)
++.++++|||+ +- |++|.+. | -+.|=..++..+.+.++ ...+-|=+.|||++..|+.+.+.
T Consensus 208 a~~l~~aGaD~I~v--G~g~Gs~c~tr~~~g~g~p~ltai~~v~~~~~------~~~vpVIAdGGI~~~~Di~KALa--- 276 (404)
T PRK06843 208 ALDLISVGADCLKV--GIGPGSICTTRIVAGVGVPQITAICDVYEVCK------NTNICIIADGGIRFSGDVVKAIA--- 276 (404)
T ss_pred HHHHHHcCCCEEEE--CCCCCcCCcceeecCCCCChHHHHHHHHHHHh------hcCCeEEEeCCCCCHHHHHHHHH---
Confidence 45688899999 93 6655431 0 01111334444444432 23467889999999999999999
Q ss_pred hhCCCCccCCCc
Q psy969 76 IMLGPDWLNKDL 87 (106)
Q Consensus 76 ~~lGa~w~~~~~ 87 (106)
+|++.+--+.
T Consensus 277 --lGA~aVmvGs 286 (404)
T PRK06843 277 --AGADSVMIGN 286 (404)
T ss_pred --cCCCEEEEcc
Confidence 7997554333
No 31
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=94.56 E-value=0.12 Score=43.11 Aligned_cols=64 Identities=13% Similarity=0.033 Sum_probs=42.5
Q ss_pred hhHHHhhCCCc-ccCC-CCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969 4 PRKVAFKGSNF-RTLH-GRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD 81 (106)
Q Consensus 4 ~~iai~aGadF-KTST-G~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~ 81 (106)
++.+++.|+|+ ..|. |...-... +..+..+.+..+. .+ +-|=+.||||+..|+..-+. +|++
T Consensus 250 a~~a~~~G~d~I~VSnhGGrqld~~-----~~~~~~L~ei~~~----~~--~~vi~dGGIr~g~Dv~KALa-----LGA~ 313 (361)
T cd04736 250 AKRCIELGADGVILSNHGGRQLDDA-----IAPIEALAEIVAA----TY--KPVLIDSGIRRGSDIVKALA-----LGAN 313 (361)
T ss_pred HHHHHHCCcCEEEECCCCcCCCcCC-----ccHHHHHHHHHHH----hC--CeEEEeCCCCCHHHHHHHHH-----cCCC
Confidence 46789999999 6553 32211111 2245555554322 22 67889999999999999999 7997
Q ss_pred cc
Q psy969 82 WL 83 (106)
Q Consensus 82 w~ 83 (106)
.+
T Consensus 314 aV 315 (361)
T cd04736 314 AV 315 (361)
T ss_pred EE
Confidence 43
No 32
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=94.32 E-value=0.27 Score=36.14 Aligned_cols=61 Identities=20% Similarity=0.264 Sum_probs=40.0
Q ss_pred hHHHhhCCCc-ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969 5 RKVAFKGSNF-RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD 81 (106)
Q Consensus 5 ~iai~aGadF-KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~ 81 (106)
+.+.+.|+|| +..+||...... ..-++.++.+++.+ +.+-|=+.||| +.+.+.++++ .|++
T Consensus 120 ~~~~~~g~d~v~~~pg~~~~~~~--~~~~~~i~~l~~~~--------~~~~i~v~GGI-~~~n~~~~~~-----~Ga~ 181 (206)
T TIGR03128 120 KELKELGADYIGVHTGLDEQAKG--QNPFEDLQTILKLV--------KEARVAVAGGI-NLDTIPDVIK-----LGPD 181 (206)
T ss_pred HHHHHcCCCEEEEcCCcCcccCC--CCCHHHHHHHHHhc--------CCCcEEEECCc-CHHHHHHHHH-----cCCC
Confidence 4456779999 998887532221 11144555555432 23456668999 8899999998 7986
No 33
>PLN02535 glycolate oxidase
Probab=94.31 E-value=0.19 Score=41.95 Aligned_cols=64 Identities=17% Similarity=0.164 Sum_probs=44.2
Q ss_pred hhHHHhhCCCc--ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969 4 PRKVAFKGSNF--RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD 81 (106)
Q Consensus 4 ~~iai~aGadF--KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~ 81 (106)
++.++++|+|+ -+.+|-...+.+ +..+..+.+..+ ..+.++-|=++||||+..|+.+.+. +|++
T Consensus 237 A~~a~~~GvD~I~vsn~GGr~~d~~-----~~t~~~L~ev~~----av~~~ipVi~dGGIr~g~Dv~KALa-----lGA~ 302 (364)
T PLN02535 237 AIKAVEVGVAGIIVSNHGARQLDYS-----PATISVLEEVVQ----AVGGRVPVLLDGGVRRGTDVFKALA-----LGAQ 302 (364)
T ss_pred HHHHHhcCCCEEEEeCCCcCCCCCC-----hHHHHHHHHHHH----HHhcCCCEEeeCCCCCHHHHHHHHH-----cCCC
Confidence 46789999999 555652222223 444444444332 2356788999999999999999999 7996
No 34
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=94.30 E-value=0.14 Score=44.13 Aligned_cols=70 Identities=21% Similarity=0.202 Sum_probs=46.1
Q ss_pred hhHHHhhCCCc-ccCCCCCCCCCCC-----CCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhh
Q psy969 4 PRKVAFKGSNF-RTLHGRGPDSTSY-----GNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIM 77 (106)
Q Consensus 4 ~~iai~aGadF-KTSTG~~~~gat~-----~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~ 77 (106)
++.++++|||+ |.+-|-+....|. +.|=+.++..+.+..++ .++-|=+.|||++..|+.+-+.
T Consensus 303 a~~a~~aGaD~i~vg~g~G~~~~t~~~~~~g~~~~~~i~~~~~~~~~------~~vpVIadGGI~~~~di~kAla----- 371 (505)
T PLN02274 303 AQNLIQAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVASIAAQ------HGVPVIADGGISNSGHIVKALT----- 371 (505)
T ss_pred HHHHHHcCcCEEEECCCCCccccCccccccCCCcccHHHHHHHHHHh------cCCeEEEeCCCCCHHHHHHHHH-----
Confidence 46788999999 9874322222221 11113466666555432 3477889999999999999999
Q ss_pred CCCCccC
Q psy969 78 LGPDWLN 84 (106)
Q Consensus 78 lGa~w~~ 84 (106)
+|++.+-
T Consensus 372 ~GA~~V~ 378 (505)
T PLN02274 372 LGASTVM 378 (505)
T ss_pred cCCCEEE
Confidence 7997443
No 35
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=94.27 E-value=0.13 Score=42.20 Aligned_cols=39 Identities=28% Similarity=0.408 Sum_probs=32.7
Q ss_pred HHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCCcc
Q psy969 40 SAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWL 83 (106)
Q Consensus 40 ~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~w~ 83 (106)
+.++++|+..++++-|=..|||.|.+||.++|. +||+-+
T Consensus 229 ~~v~~l~~~~~~~ipIIGvGGI~s~~DA~E~i~-----aGA~~v 267 (310)
T COG0167 229 RVVAELYKRLGGDIPIIGVGGIETGEDALEFIL-----AGASAV 267 (310)
T ss_pred HHHHHHHHhcCCCCcEEEecCcCcHHHHHHHHH-----cCCchh
Confidence 345666777888999999999999999999999 798643
No 36
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=94.11 E-value=0.24 Score=39.90 Aligned_cols=66 Identities=23% Similarity=0.225 Sum_probs=47.9
Q ss_pred hHHHhhCCCc-ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCCcc
Q psy969 5 RKVAFKGSNF-RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWL 83 (106)
Q Consensus 5 ~iai~aGadF-KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~w~ 83 (106)
..++++|+|. . -- +-+ +++++...+.+++.. .++++.+=+|||| |.+...+|.+ .|+|
T Consensus 196 ~~a~~agaDiI~-LD-----n~~-----~e~l~~~v~~l~~~~--~~~~~~leaSGGI-~~~ni~~yA~-----tGvD-- 254 (278)
T PRK08385 196 LKAAKAGADIIM-LD-----NMT-----PEEIREVIEALKREG--LRERVKIEVSGGI-TPENIEEYAK-----LDVD-- 254 (278)
T ss_pred HHHHHcCcCEEE-EC-----CCC-----HHHHHHHHHHHHhcC--cCCCEEEEEECCC-CHHHHHHHHH-----cCCC--
Confidence 4677889987 4 22 225 777777766554320 1368999999999 9999999999 7997
Q ss_pred CCCceeEeccchH
Q psy969 84 NKDLFRIGASSLL 96 (106)
Q Consensus 84 ~~~~~RiGtSs~~ 96 (106)
.|.+|++.
T Consensus 255 -----~Is~galt 262 (278)
T PRK08385 255 -----VISLGALT 262 (278)
T ss_pred -----EEEeChhh
Confidence 88887653
No 37
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=94.09 E-value=0.2 Score=42.50 Aligned_cols=70 Identities=21% Similarity=0.221 Sum_probs=42.6
Q ss_pred hhHHHhhCCCc-ccCCCCCCCC--CCC--CCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhC
Q psy969 4 PRKVAFKGSNF-RTLHGRGPDS--TSY--GNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIML 78 (106)
Q Consensus 4 ~~iai~aGadF-KTSTG~~~~g--at~--~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~l 78 (106)
++.++++|||+ +. |++|.. .|- -.+=..++..+.+..+.. ....+-|=+.||||+..|+..-+. +
T Consensus 283 a~~l~~aGad~i~v--g~g~gs~~~~r~~~~~g~p~~~~~~~~~~~~---~~~~~~viadGGi~~~~di~kAla-----~ 352 (486)
T PRK05567 283 ARALIEAGADAVKV--GIGPGSICTTRIVAGVGVPQITAIADAAEAA---KKYGIPVIADGGIRYSGDIAKALA-----A 352 (486)
T ss_pred HHHHHHcCCCEEEE--CCCCCccccceeecCCCcCHHHHHHHHHHHh---ccCCCeEEEcCCCCCHHHHHHHHH-----h
Confidence 45788999999 95 443321 000 000023444444443221 123577889999999999999999 7
Q ss_pred CCCcc
Q psy969 79 GPDWL 83 (106)
Q Consensus 79 Ga~w~ 83 (106)
|++.+
T Consensus 353 GA~~v 357 (486)
T PRK05567 353 GASAV 357 (486)
T ss_pred CCCEE
Confidence 98743
No 38
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=93.98 E-value=0.23 Score=37.22 Aligned_cols=71 Identities=18% Similarity=0.152 Sum_probs=41.7
Q ss_pred hhHHHhhCCCc-cc-CCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969 4 PRKVAFKGSNF-RT-LHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD 81 (106)
Q Consensus 4 ~~iai~aGadF-KT-STG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~ 81 (106)
.+.+.+.|+|| .+ +.|+...... .-..+..++.+. + +.. ++-|=++|||+|.+++.++++ +|++
T Consensus 132 ~~~a~~~G~d~i~~~~~g~t~~~~~---~~~~~~~~i~~i-~---~~~--~iPvia~GGI~t~~~~~~~l~-----~Gad 197 (221)
T PRK01130 132 GLAAQKLGFDFIGTTLSGYTEETKK---PEEPDFALLKEL-L---KAV--GCPVIAEGRINTPEQAKKALE-----LGAH 197 (221)
T ss_pred HHHHHHcCCCEEEcCCceeecCCCC---CCCcCHHHHHHH-H---HhC--CCCEEEECCCCCHHHHHHHHH-----CCCC
Confidence 35678899999 76 4454321100 002233333322 2 222 345668999999999999999 6875
Q ss_pred ccCCCceeEecc
Q psy969 82 WLNKDLFRIGAS 93 (106)
Q Consensus 82 w~~~~~~RiGtS 93 (106)
..-+|++
T Consensus 198 -----gV~iGsa 204 (221)
T PRK01130 198 -----AVVVGGA 204 (221)
T ss_pred -----EEEEchH
Confidence 3455543
No 39
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=93.90 E-value=0.17 Score=42.57 Aligned_cols=67 Identities=22% Similarity=0.162 Sum_probs=41.5
Q ss_pred hhHHHhhCCCc-ccCCCCCCCCCCC-----CCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhh
Q psy969 4 PRKVAFKGSNF-RTLHGRGPDSTSY-----GNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIM 77 (106)
Q Consensus 4 ~~iai~aGadF-KTSTG~~~~gat~-----~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~ 77 (106)
++.++++|||| |++-|-+....|- +-|=...+....++.+ ...+-|=+.|||++..|+..-++
T Consensus 279 a~~l~~aGad~i~vg~g~G~~~~t~~~~~~g~p~~~~i~~~~~~~~------~~~vpviadGGi~~~~di~kAla----- 347 (450)
T TIGR01302 279 AKALIDAGADGLRVGIGPGSICTTRIVAGVGVPQITAVYDVAEYAA------QSGIPVIADGGIRYSGDIVKALA----- 347 (450)
T ss_pred HHHHHHhCCCEEEECCCCCcCCccceecCCCccHHHHHHHHHHHHh------hcCCeEEEeCCCCCHHHHHHHHH-----
Confidence 56789999999 9864322111110 0000223333333332 23477889999999999999999
Q ss_pred CCCC
Q psy969 78 LGPD 81 (106)
Q Consensus 78 lGa~ 81 (106)
+|++
T Consensus 348 ~GA~ 351 (450)
T TIGR01302 348 AGAD 351 (450)
T ss_pred cCCC
Confidence 7986
No 40
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=93.89 E-value=0.3 Score=40.20 Aligned_cols=67 Identities=18% Similarity=0.107 Sum_probs=43.0
Q ss_pred hhHHHhhCCCc--ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969 4 PRKVAFKGSNF--RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD 81 (106)
Q Consensus 4 ~~iai~aGadF--KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~ 81 (106)
.+.+.++|+|+ -..+|-.....+ +.-+..+.+. .++.+..++++-|=++||||+-.|+.+.+. ||++
T Consensus 227 A~~a~~~G~d~I~vsnhgG~~~d~~-----~~~~~~L~~i-~~~~~~~~~~~~vi~~GGIr~G~Dv~kala-----LGA~ 295 (344)
T cd02922 227 AVLAAEYGVDGIVLSNHGGRQLDTA-----PAPIEVLLEI-RKHCPEVFDKIEVYVDGGVRRGTDVLKALC-----LGAK 295 (344)
T ss_pred HHHHHHcCCCEEEEECCCcccCCCC-----CCHHHHHHHH-HHHHHHhCCCceEEEeCCCCCHHHHHHHHH-----cCCC
Confidence 45788999999 555551111111 2233333322 232223456788999999999999999999 7996
No 41
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=93.87 E-value=0.13 Score=40.29 Aligned_cols=59 Identities=12% Similarity=0.030 Sum_probs=39.2
Q ss_pred hhHHHhhCCCc-ccCCCCCCCC--CCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCC
Q psy969 4 PRKVAFKGSNF-RTLHGRGPDS--TSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGP 80 (106)
Q Consensus 4 ~~iai~aGadF-KTSTG~~~~g--at~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa 80 (106)
++.+.++|+|+ .=..++ ++. +. .+.++.++++ . +.+-|=+.|||+|.+||++|++ .|+
T Consensus 154 a~~l~~aGad~i~Vd~~~-~g~~~a~-----~~~I~~i~~~-------~-~~ipIIgNGgI~s~eda~e~l~-----~GA 214 (231)
T TIGR00736 154 ALNLVDDGFDGIHVDAMY-PGKPYAD-----MDLLKILSEE-------F-NDKIIIGNNSIDDIESAKEMLK-----AGA 214 (231)
T ss_pred HHHHHHcCCCEEEEeeCC-CCCchhh-----HHHHHHHHHh-------c-CCCcEEEECCcCCHHHHHHHHH-----hCC
Confidence 56788999999 433333 322 33 4444444433 2 2355778999999999999998 588
Q ss_pred C
Q psy969 81 D 81 (106)
Q Consensus 81 ~ 81 (106)
+
T Consensus 215 d 215 (231)
T TIGR00736 215 D 215 (231)
T ss_pred C
Confidence 5
No 42
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=93.86 E-value=0.18 Score=43.26 Aligned_cols=74 Identities=11% Similarity=0.039 Sum_probs=46.7
Q ss_pred hhHHHhhCCCc-c---------cCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHH
Q psy969 4 PRKVAFKGSNF-R---------TLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYL 73 (106)
Q Consensus 4 ~~iai~aGadF-K---------TSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l 73 (106)
++-++++|||+ | |.-++. +.+ ..+...+.+..+..+ ...+-|=+-|||++..|+...+.
T Consensus 282 a~~l~~aGad~v~vgig~gsictt~~~~--~~~-----~p~~~av~~~~~~~~---~~~~~via~ggi~~~~~~~~al~- 350 (479)
T PRK07807 282 TRDLVEAGADIVKVGVGPGAMCTTRMMT--GVG-----RPQFSAVLECAAAAR---ELGAHVWADGGVRHPRDVALALA- 350 (479)
T ss_pred HHHHHHcCCCEEEECccCCccccccccc--CCc-----hhHHHHHHHHHHHHH---hcCCcEEecCCCCCHHHHHHHHH-
Confidence 45678999999 9 333332 233 334444444332111 22477889999999999999999
Q ss_pred HHhhCCCCccCCCceeEec
Q psy969 74 VLIMLGPDWLNKDLFRIGA 92 (106)
Q Consensus 74 ~~~~lGa~w~~~~~~RiGt 92 (106)
+|++++--+..-.|+
T Consensus 351 ----~ga~~v~~g~~~ag~ 365 (479)
T PRK07807 351 ----AGASNVMIGSWFAGT 365 (479)
T ss_pred ----cCCCeeeccHhhccC
Confidence 798765444433333
No 43
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=93.73 E-value=0.3 Score=40.83 Aligned_cols=64 Identities=13% Similarity=0.069 Sum_probs=44.1
Q ss_pred hhHHHhhCCCc--ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969 4 PRKVAFKGSNF--RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD 81 (106)
Q Consensus 4 ~~iai~aGadF--KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~ 81 (106)
.+.+.++|+|. -+.+|-...... +.++..+.+..+ ..++++-|=++||||+..|+.+.+. +|++
T Consensus 242 a~~a~~~Gvd~I~VS~HGGrq~~~~-----~a~~~~L~ei~~----av~~~i~vi~dGGIr~g~Dv~KaLa-----lGAd 307 (367)
T TIGR02708 242 ADRALKAGASGIWVTNHGGRQLDGG-----PAAFDSLQEVAE----AVDKRVPIVFDSGVRRGQHVFKALA-----SGAD 307 (367)
T ss_pred HHHHHHcCcCEEEECCcCccCCCCC-----CcHHHHHHHHHH----HhCCCCcEEeeCCcCCHHHHHHHHH-----cCCC
Confidence 46788999997 677773211112 233444443322 2466799999999999999999999 7986
No 44
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=93.67 E-value=0.38 Score=37.71 Aligned_cols=24 Identities=33% Similarity=0.733 Sum_probs=21.6
Q ss_pred eeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969 53 IGLKPAGGISTFEDSVRWIYLVLIMLGPD 81 (106)
Q Consensus 53 vgiKaaGGIrt~~~a~~~i~l~~~~lGa~ 81 (106)
+-|=+.|||+|.+||.+++. .|++
T Consensus 235 ipvi~~GGI~s~~da~~~l~-----~GAd 258 (300)
T TIGR01037 235 IPIIGVGGITSFEDALEFLM-----AGAS 258 (300)
T ss_pred CCEEEECCCCCHHHHHHHHH-----cCCC
Confidence 67888999999999999998 6886
No 45
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=93.67 E-value=0.21 Score=41.35 Aligned_cols=64 Identities=11% Similarity=0.045 Sum_probs=42.0
Q ss_pred hhHHHhhCCCc--ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969 4 PRKVAFKGSNF--RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD 81 (106)
Q Consensus 4 ~~iai~aGadF--KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~ 81 (106)
.+.+.++|+|+ -..+|-...... +..+..+.+ ..+..++++-|=++||||+..|+.+.+. +|++
T Consensus 235 A~~a~~~G~d~I~vsnhGGr~ld~~-----~~~~~~l~~----i~~a~~~~i~vi~dGGIr~g~Di~kaLa-----lGA~ 300 (351)
T cd04737 235 ADVAINAGADGIWVSNHGGRQLDGG-----PASFDSLPE----IAEAVNHRVPIIFDSGVRRGEHVFKALA-----SGAD 300 (351)
T ss_pred HHHHHHcCCCEEEEeCCCCccCCCC-----chHHHHHHH----HHHHhCCCCeEEEECCCCCHHHHHHHHH-----cCCC
Confidence 46789999999 444541111111 223333332 2233466899999999999999999999 7986
No 46
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=93.61 E-value=0.43 Score=38.37 Aligned_cols=79 Identities=19% Similarity=0.236 Sum_probs=53.4
Q ss_pred hhhHHHhhCCCc-ccCCC--C------CCC----CCCCCCCCch-HHHHHHHHHHHHhhhcCC--ceeEeec------CC
Q psy969 3 RPRKVAFKGSNF-RTLHG--R------GPD----STSYGNVCNT-CGIIMCSAIKHFHKLSGK--KIGLKPA------GG 60 (106)
Q Consensus 3 ~~~iai~aGadF-KTSTG--~------~~~----gat~~~~~~~-~v~lm~~~i~~~~~~~~~--~vgiKaa------GG 60 (106)
+++.|.++|.|. --.-| | +|. .-.||-. +| ..+.+++.|++.++..++ .|+||.+ +|
T Consensus 154 aA~ra~~aGfDgVeih~a~gyLl~qFlsp~~N~R~D~yGGs-lenR~rf~~EiI~aIR~avG~d~~v~vris~~~~~~~g 232 (338)
T cd04733 154 AARLAQEAGFDGVQIHAAHGYLLSQFLSPLTNKRTDEYGGS-LENRARLLLEIYDAIRAAVGPGFPVGIKLNSADFQRGG 232 (338)
T ss_pred HHHHHHHcCCCEEEEchhhhhHHHHhcCCcCCCCCccCCCC-HHHHHHHHHHHHHHHHHHcCCCCeEEEEEcHHHcCCCC
Confidence 467788899998 54333 2 221 0112111 44 477888888888887875 5999998 56
Q ss_pred CCCHHHHHHHHHHHHhhCCCCccC
Q psy969 61 ISTFEDSVRWIYLVLIMLGPDWLN 84 (106)
Q Consensus 61 Irt~~~a~~~i~l~~~~lGa~w~~ 84 (106)
. |.+++++++...++ +|.+|++
T Consensus 233 ~-~~eea~~ia~~Le~-~Gvd~ie 254 (338)
T cd04733 233 F-TEEDALEVVEALEE-AGVDLVE 254 (338)
T ss_pred C-CHHHHHHHHHHHHH-cCCCEEE
Confidence 5 78999999887655 6889875
No 47
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=93.60 E-value=0.48 Score=38.00 Aligned_cols=79 Identities=19% Similarity=0.274 Sum_probs=53.0
Q ss_pred hhhHHHhhCCCc-ccCC--CC------CC----CCCCCCCCCch-HHHHHHHHHHHHhhhcCC--ceeEeec------CC
Q psy969 3 RPRKVAFKGSNF-RTLH--GR------GP----DSTSYGNVCNT-CGIIMCSAIKHFHKLSGK--KIGLKPA------GG 60 (106)
Q Consensus 3 ~~~iai~aGadF-KTST--G~------~~----~gat~~~~~~~-~v~lm~~~i~~~~~~~~~--~vgiKaa------GG 60 (106)
+++.|.++|.|. +-.- || +| ..-.||.. ++ ..+.+.+.+++.++.+++ .|+||.+ +|
T Consensus 159 aA~~a~~aGfDgVei~~~~gyLl~qFlsp~~N~R~D~yGgs-l~nr~rf~~eiv~aIR~~vG~d~~v~vri~~~~~~~~g 237 (336)
T cd02932 159 AARRAVEAGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYGGS-LENRMRFLLEVVDAVRAVWPEDKPLFVRISATDWVEGG 237 (336)
T ss_pred HHHHHHHcCCCEEEEccccccHHHHhcCCccCCCCcccCCC-HHHHhHHHHHHHHHHHHHcCCCceEEEEEcccccCCCC
Confidence 467888999999 6543 43 11 11112211 33 477777777777777854 6999988 55
Q ss_pred CCCHHHHHHHHHHHHhhCCCCccC
Q psy969 61 ISTFEDSVRWIYLVLIMLGPDWLN 84 (106)
Q Consensus 61 Irt~~~a~~~i~l~~~~lGa~w~~ 84 (106)
. +.+++++++...++ +|.+|++
T Consensus 238 ~-~~~e~~~ia~~Le~-~gvd~ie 259 (336)
T cd02932 238 W-DLEDSVELAKALKE-LGVDLID 259 (336)
T ss_pred C-CHHHHHHHHHHHHH-cCCCEEE
Confidence 5 68999999887765 6899986
No 48
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=93.45 E-value=0.45 Score=35.74 Aligned_cols=63 Identities=21% Similarity=0.236 Sum_probs=38.1
Q ss_pred hHHHhhCCCc-cc-CCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969 5 RKVAFKGSNF-RT-LHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD 81 (106)
Q Consensus 5 ~iai~aGadF-KT-STG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~ 81 (106)
+.+.+.|+|| ++ +.|+.+.... .. ..+...+.+ ++ +.. ++-|=+.|||+|.+++.++++ +|++
T Consensus 137 ~~a~~~G~d~i~~~~~g~t~~~~~--~~-~~~~~~l~~-i~---~~~--~ipvia~GGI~~~~~~~~~l~-----~Gad 201 (219)
T cd04729 137 LNAAKLGFDIIGTTLSGYTEETAK--TE-DPDFELLKE-LR---KAL--GIPVIAEGRINSPEQAAKALE-----LGAD 201 (219)
T ss_pred HHHHHcCCCEEEccCccccccccC--CC-CCCHHHHHH-HH---Hhc--CCCEEEeCCCCCHHHHHHHHH-----CCCC
Confidence 4677889999 75 4565332111 00 112333222 22 222 355668999999999999999 6885
No 49
>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed
Probab=93.43 E-value=0.14 Score=41.10 Aligned_cols=36 Identities=22% Similarity=0.361 Sum_probs=29.8
Q ss_pred HHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969 41 AIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD 81 (106)
Q Consensus 41 ~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~ 81 (106)
.+.+.++..++++-|=++|||.|.+||.+|+. +|++
T Consensus 230 ~v~~~~~~~~~~ipIig~GGI~s~~da~e~i~-----aGA~ 265 (310)
T PRK02506 230 NVRAFYQRLNPSIQIIGTGGVKTGRDAFEHIL-----CGAS 265 (310)
T ss_pred HHHHHHHhcCCCCCEEEECCCCCHHHHHHHHH-----cCCC
Confidence 34455556677899999999999999999998 7996
No 50
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=93.30 E-value=0.46 Score=35.22 Aligned_cols=56 Identities=20% Similarity=0.230 Sum_probs=36.3
Q ss_pred hhHHHhhCCCcccCCCCCC-----CCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHH
Q psy969 4 PRKVAFKGSNFRTLHGRGP-----DSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYL 73 (106)
Q Consensus 4 ~~iai~aGadFKTSTG~~~-----~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l 73 (106)
++...++|+||-|-++... .+.. .+.++.+++ ..++-|.+.|||+|++++.++++.
T Consensus 144 ~~~l~~~Gvd~i~v~~~~~~~~~~~~~~-----~~~~~~i~~---------~~~ipvi~~Ggi~~~~d~~~~l~~ 204 (231)
T cd02801 144 AKALEDAGASALTVHGRTREQRYSGPAD-----WDYIAEIKE---------AVSIPVIANGDIFSLEDALRCLEQ 204 (231)
T ss_pred HHHHHHhCCCEEEECCCCHHHcCCCCCC-----HHHHHHHHh---------CCCCeEEEeCCCCCHHHHHHHHHh
Confidence 3456678999933333321 1233 344444332 246889999999999999999983
No 51
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=93.21 E-value=0.48 Score=38.36 Aligned_cols=64 Identities=16% Similarity=0.157 Sum_probs=47.7
Q ss_pred hHHHhhCCCc-ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCCcc
Q psy969 5 RKVAFKGSNF-RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWL 83 (106)
Q Consensus 5 ~iai~aGadF-KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~w~ 83 (106)
+.|+++|||+ .=- +-+ +++++...+.+++ ..+++-+=+|||| |.+.+.+|.+ .|+|
T Consensus 210 ~eA~~~GaD~I~LD------n~~-----~e~l~~av~~~~~----~~~~i~leAsGGI-t~~ni~~ya~-----tGvD-- 266 (288)
T PRK07428 210 QEALEYGADIIMLD------NMP-----VDLMQQAVQLIRQ----QNPRVKIEASGNI-TLETIRAVAE-----TGVD-- 266 (288)
T ss_pred HHHHHcCCCEEEEC------CCC-----HHHHHHHHHHHHh----cCCCeEEEEECCC-CHHHHHHHHH-----cCCC--
Confidence 3577889999 532 345 7777776665543 2467899999999 7999999998 7996
Q ss_pred CCCceeEeccchH
Q psy969 84 NKDLFRIGASSLL 96 (106)
Q Consensus 84 ~~~~~RiGtSs~~ 96 (106)
+|-+|++.
T Consensus 267 -----~Isvgsl~ 274 (288)
T PRK07428 267 -----YISSSAPI 274 (288)
T ss_pred -----EEEEchhh
Confidence 88777654
No 52
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=93.06 E-value=0.35 Score=39.19 Aligned_cols=69 Identities=23% Similarity=0.223 Sum_probs=39.3
Q ss_pred hhHHHhhCCCc-ccCCCCCCCCCC-----CCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhh
Q psy969 4 PRKVAFKGSNF-RTLHGRGPDSTS-----YGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIM 77 (106)
Q Consensus 4 ~~iai~aGadF-KTSTG~~~~gat-----~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~ 77 (106)
++.++++|||| +..-|=+....+ .+.|-...+..+.++.++ .++-|=++|||++..++.+.+.
T Consensus 149 A~~l~~aGaD~I~vg~g~G~~~~t~~~~g~g~p~~~~i~~v~~~~~~------~~vpVIA~GGI~~~~di~kAla----- 217 (325)
T cd00381 149 ARDLIDAGADGVKVGIGPGSICTTRIVTGVGVPQATAVADVAAAARD------YGVPVIADGGIRTSGDIVKALA----- 217 (325)
T ss_pred HHHHHhcCCCEEEECCCCCcCcccceeCCCCCCHHHHHHHHHHHHhh------cCCcEEecCCCCCHHHHHHHHH-----
Confidence 45688999999 852110000001 011112233333333321 1355669999999999999999
Q ss_pred CCCCcc
Q psy969 78 LGPDWL 83 (106)
Q Consensus 78 lGa~w~ 83 (106)
+|++.+
T Consensus 218 ~GA~~V 223 (325)
T cd00381 218 AGADAV 223 (325)
T ss_pred cCCCEE
Confidence 798744
No 53
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=92.90 E-value=0.66 Score=36.47 Aligned_cols=81 Identities=17% Similarity=0.250 Sum_probs=52.4
Q ss_pred hhhHHHhhCCCc---ccCCCC------CCC----CCCCCCCCchHHHHHHHHHHHHhhhcCC--ceeEeecCC-----CC
Q psy969 3 RPRKVAFKGSNF---RTLHGR------GPD----STSYGNVCNTCGIIMCSAIKHFHKLSGK--KIGLKPAGG-----IS 62 (106)
Q Consensus 3 ~~~iai~aGadF---KTSTG~------~~~----gat~~~~~~~~v~lm~~~i~~~~~~~~~--~vgiKaaGG-----Ir 62 (106)
+++.|.++|.|. .-..|| .|. .-.||..-....+++++.+++.++..++ .+++|.+.. --
T Consensus 146 aA~~a~~aGfDgveih~~~gyL~~qFlsp~~n~R~d~yGgs~enr~r~~~eii~avr~~~g~d~~i~vris~~~~~~~g~ 225 (327)
T cd02803 146 AARRAKEAGFDGVEIHGAHGYLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVREAVGPDFPVGVRLSADDFVPGGL 225 (327)
T ss_pred HHHHHHHcCCCEEEEcchhhhHHHHhcCccccCCCcccCCCHHHHHHHHHHHHHHHHHHcCCCceEEEEechhccCCCCC
Confidence 567888999999 445565 221 1112222123477777777777777754 699999852 14
Q ss_pred CHHHHHHHHHHHHhhCCCCccC
Q psy969 63 TFEDSVRWIYLVLIMLGPDWLN 84 (106)
Q Consensus 63 t~~~a~~~i~l~~~~lGa~w~~ 84 (106)
+.++++++++..++ +|.+|++
T Consensus 226 ~~~e~~~la~~l~~-~G~d~i~ 246 (327)
T cd02803 226 TLEEAIEIAKALEE-AGVDALH 246 (327)
T ss_pred CHHHHHHHHHHHHH-cCCCEEE
Confidence 78888888776543 6899873
No 54
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=92.86 E-value=0.38 Score=38.29 Aligned_cols=61 Identities=16% Similarity=0.087 Sum_probs=47.4
Q ss_pred HHHhhCCCc--ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969 6 KVAFKGSNF--RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD 81 (106)
Q Consensus 6 iai~aGadF--KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~ 81 (106)
-|..+|+|| -|-.||...+.+ |=.+|..+|++.. ..++-+=|=|.+.|+++|.+-++ +|+.
T Consensus 142 ~a~~~G~D~IGTTLsGYT~~~~~---~~~pDf~lvk~l~-------~~~~~vIAEGr~~tP~~Ak~a~~-----~Ga~ 204 (229)
T COG3010 142 NAHKLGFDIIGTTLSGYTGYTEK---PTEPDFQLVKQLS-------DAGCRVIAEGRYNTPEQAKKAIE-----IGAD 204 (229)
T ss_pred HHHHcCCcEEecccccccCCCCC---CCCCcHHHHHHHH-------hCCCeEEeeCCCCCHHHHHHHHH-----hCCe
Confidence 467789999 889999764433 2255788877653 36778889999999999999999 6984
No 55
>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.
Probab=92.74 E-value=0.52 Score=39.17 Aligned_cols=28 Identities=29% Similarity=0.482 Sum_probs=24.9
Q ss_pred CceeEeecCCCCCHHHHHHHHHHHHhhCCCCcc
Q psy969 51 KKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWL 83 (106)
Q Consensus 51 ~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~w~ 83 (106)
.++-|=++|||+|..|+.+.+. +|++++
T Consensus 284 ~~i~viasGGI~~g~Dv~kala-----LGAd~V 311 (392)
T cd02808 284 DRVSLIASGGLRTGADVAKALA-----LGADAV 311 (392)
T ss_pred CCCeEEEECCCCCHHHHHHHHH-----cCCCee
Confidence 4688889999999999999999 799854
No 56
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.
Probab=92.66 E-value=0.45 Score=38.57 Aligned_cols=26 Identities=31% Similarity=0.388 Sum_probs=23.4
Q ss_pred CceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969 51 KKIGLKPAGGISTFEDSVRWIYLVLIMLGPD 81 (106)
Q Consensus 51 ~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~ 81 (106)
.++-|=++||||+.+++.+.+. +|++
T Consensus 253 ~~ipVIasGGI~~~~di~kaLa-----lGAd 278 (333)
T TIGR02151 253 PDAPIIASGGLRTGLDVAKAIA-----LGAD 278 (333)
T ss_pred CCCeEEEECCCCCHHHHHHHHH-----hCCC
Confidence 4578889999999999999999 6986
No 57
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=92.63 E-value=0.37 Score=36.02 Aligned_cols=64 Identities=19% Similarity=0.242 Sum_probs=45.1
Q ss_pred hHHHhhCCCc-ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCCcc
Q psy969 5 RKVAFKGSNF-RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWL 83 (106)
Q Consensus 5 ~iai~aGadF-KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~w~ 83 (106)
+.|+++|+|. .==+ -+ +++++-..+.++. .++++.|=+|||| |.+...+|.+ .|.|
T Consensus 94 ~ea~~~g~d~I~lD~------~~-----~~~~~~~v~~l~~----~~~~v~ie~SGGI-~~~ni~~ya~-----~gvD-- 150 (169)
T PF01729_consen 94 EEALEAGADIIMLDN------MS-----PEDLKEAVEELRE----LNPRVKIEASGGI-TLENIAEYAK-----TGVD-- 150 (169)
T ss_dssp HHHHHTT-SEEEEES-------C-----HHHHHHHHHHHHH----HTTTSEEEEESSS-STTTHHHHHH-----TT-S--
T ss_pred HHHHHhCCCEEEecC------cC-----HHHHHHHHHHHhh----cCCcEEEEEECCC-CHHHHHHHHh-----cCCC--
Confidence 4577888888 4222 25 7787777776654 3678999999999 5678888888 7986
Q ss_pred CCCceeEeccchH
Q psy969 84 NKDLFRIGASSLL 96 (106)
Q Consensus 84 ~~~~~RiGtSs~~ 96 (106)
.|+++++.
T Consensus 151 -----~isvg~~~ 158 (169)
T PF01729_consen 151 -----VISVGSLT 158 (169)
T ss_dssp -----EEEECHHH
T ss_pred -----EEEcChhh
Confidence 88777653
No 58
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=92.56 E-value=0.77 Score=37.68 Aligned_cols=26 Identities=27% Similarity=0.399 Sum_probs=23.2
Q ss_pred CceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969 51 KKIGLKPAGGISTFEDSVRWIYLVLIMLGPD 81 (106)
Q Consensus 51 ~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~ 81 (106)
.++-|=++||||+..|+.+++. +|++
T Consensus 260 ~~ipvia~GGI~~~~dv~k~l~-----~GAd 285 (352)
T PRK05437 260 PDLPIIASGGIRNGLDIAKALA-----LGAD 285 (352)
T ss_pred CCCeEEEECCCCCHHHHHHHHH-----cCCC
Confidence 3577889999999999999999 7986
No 59
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=92.46 E-value=0.57 Score=36.58 Aligned_cols=25 Identities=28% Similarity=0.553 Sum_probs=22.3
Q ss_pred ceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969 52 KIGLKPAGGISTFEDSVRWIYLVLIMLGPD 81 (106)
Q Consensus 52 ~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~ 81 (106)
++-|=+.|||+|.+++.+++. +|++
T Consensus 231 ~ipii~~GGI~~~~da~~~l~-----~GAd 255 (296)
T cd04740 231 EIPIIGVGGIASGEDALEFLM-----AGAS 255 (296)
T ss_pred CCCEEEECCCCCHHHHHHHHH-----cCCC
Confidence 467888999999999999998 7986
No 60
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=92.45 E-value=0.8 Score=37.84 Aligned_cols=37 Identities=22% Similarity=0.447 Sum_probs=27.2
Q ss_pred HHHHHhhhcC-CceeEeecCCCCCHHHHHHHHHHHHhhCCCCc
Q psy969 41 AIKHFHKLSG-KKIGLKPAGGISTFEDSVRWIYLVLIMLGPDW 82 (106)
Q Consensus 41 ~i~~~~~~~~-~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~w 82 (106)
.|++.++..+ +++-|=++|||.|.+||.+|+. +|++-
T Consensus 241 ~v~~~~~~~~~~~ipIig~GGI~s~~da~e~i~-----aGA~~ 278 (420)
T PRK08318 241 MVAEIARDPETRGLPISGIGGIETWRDAAEFIL-----LGAGT 278 (420)
T ss_pred HHHHHHhccccCCCCEEeecCcCCHHHHHHHHH-----hCCCh
Confidence 3334444343 3677888999999999999998 79963
No 61
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=92.37 E-value=0.79 Score=38.20 Aligned_cols=79 Identities=22% Similarity=0.172 Sum_probs=45.5
Q ss_pred hhHHHhhCCCc-ccCCCCCCCCCCC-----CCCCchHHHHHHHHHHHHhhhc-CCceeEeecCCCCCHHHHHHHHHHHHh
Q psy969 4 PRKVAFKGSNF-RTLHGRGPDSTSY-----GNVCNTCGIIMCSAIKHFHKLS-GKKIGLKPAGGISTFEDSVRWIYLVLI 76 (106)
Q Consensus 4 ~~iai~aGadF-KTSTG~~~~gat~-----~~~~~~~v~lm~~~i~~~~~~~-~~~vgiKaaGGIrt~~~a~~~i~l~~~ 76 (106)
++.++++|||. +-+-|-+....|. +-|.+..+....++.++|.+.. +..+-|=++|||++..|+.+-+.
T Consensus 201 A~~l~~aGAD~V~VG~G~Gs~~~t~~~~g~g~p~~~ai~~~~~a~~~~l~~~~~~~vpVIAdGGI~~~~diakAla---- 276 (368)
T PRK08649 201 ALHLMRTGAAGVLVGIGPGAACTSRGVLGIGVPMATAIADVAAARRDYLDETGGRYVHVIADGGIGTSGDIAKAIA---- 276 (368)
T ss_pred HHHHHHcCCCEEEECCCCCcCCCCcccCCCCcCHHHHHHHHHHHHHHhhhhhcCCCCeEEEeCCCCCHHHHHHHHH----
Confidence 45577899999 8753321111110 1222223333333323332222 23588889999999999999999
Q ss_pred hCCCCccCCCc
Q psy969 77 MLGPDWLNKDL 87 (106)
Q Consensus 77 ~lGa~w~~~~~ 87 (106)
+|++.+.=+.
T Consensus 277 -lGAd~Vm~Gs 286 (368)
T PRK08649 277 -CGADAVMLGS 286 (368)
T ss_pred -cCCCeecccc
Confidence 7998654443
No 62
>PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related. These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A ....
Probab=92.36 E-value=0.65 Score=38.32 Aligned_cols=64 Identities=19% Similarity=0.139 Sum_probs=39.9
Q ss_pred hhHHHhhCCCc--ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969 4 PRKVAFKGSNF--RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD 81 (106)
Q Consensus 4 ~~iai~aGadF--KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~ 81 (106)
.+.+.++|+|. -..+|--.-.-. +..+..+.+..+ ..++++-|=++||||+-.|+...+. ||++
T Consensus 239 a~~~~~~G~~~i~vs~hGGr~~d~~-----~~~~~~L~~i~~----~~~~~~~i~~dgGir~g~Dv~kala-----LGA~ 304 (356)
T PF01070_consen 239 AKRAVDAGVDGIDVSNHGGRQLDWG-----PPTIDALPEIRA----AVGDDIPIIADGGIRRGLDVAKALA-----LGAD 304 (356)
T ss_dssp HHHHHHTT-SEEEEESGTGTSSTTS------BHHHHHHHHHH----HHTTSSEEEEESS--SHHHHHHHHH-----TT-S
T ss_pred HHHHHhcCCCEEEecCCCcccCccc-----cccccccHHHHh----hhcCCeeEEEeCCCCCHHHHHHHHH-----cCCC
Confidence 46788999998 555652211111 334444443322 2478999999999999999999999 7996
No 63
>PLN02979 glycolate oxidase
Probab=92.35 E-value=0.69 Score=38.95 Aligned_cols=64 Identities=17% Similarity=0.135 Sum_probs=43.8
Q ss_pred hhHHHhhCCCc--ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969 4 PRKVAFKGSNF--RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD 81 (106)
Q Consensus 4 ~~iai~aGadF--KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~ 81 (106)
++.++++|+|+ -...|-...... +..+..+.+..+ ..++++-|=++||||+-.|+..-+. ||++
T Consensus 237 A~~a~~~Gvd~I~VsnhGGrqld~~-----p~t~~~L~ei~~----~~~~~~~Vi~dGGIr~G~Di~KALA-----LGAd 302 (366)
T PLN02979 237 ARIAIQAGAAGIIVSNHGARQLDYV-----PATISALEEVVK----ATQGRIPVFLDGGVRRGTDVFKALA-----LGAS 302 (366)
T ss_pred HHHHHhcCCCEEEECCCCcCCCCCc-----hhHHHHHHHHHH----HhCCCCeEEEeCCcCcHHHHHHHHH-----cCCC
Confidence 46789999999 555552222222 333444444322 2466788999999999999999999 7996
No 64
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=92.33 E-value=0.13 Score=42.14 Aligned_cols=20 Identities=45% Similarity=0.647 Sum_probs=18.5
Q ss_pred ecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969 57 PAGGISTFEDSVRWIYLVLIMLGPD 81 (106)
Q Consensus 57 aaGGIrt~~~a~~~i~l~~~~lGa~ 81 (106)
+.|||.|++++..+++ +|++
T Consensus 210 AeGGI~TPedaa~vme-----~GAd 229 (293)
T PRK04180 210 AAGGIATPADAALMMQ-----LGAD 229 (293)
T ss_pred EeCCCCCHHHHHHHHH-----hCCC
Confidence 7799999999999999 7986
No 65
>PF01645 Glu_synthase: Conserved region in glutamate synthase; InterPro: IPR002932 Ferredoxin-dependent glutamate synthases have been implicated in a number of functions including photorespiration in Arabidopsis where they may also play a role in primary nitrogen assimilation in roots []. This region is expressed as a seperate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.; GO: 0015930 glutamate synthase activity, 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0006537 glutamate biosynthetic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.
Probab=92.17 E-value=0.27 Score=41.22 Aligned_cols=80 Identities=24% Similarity=0.321 Sum_probs=41.5
Q ss_pred HHHhhCCCcccCCCCC-CCCCCC----CCCCchHHHHHHHHHHHHhh-hcCCceeEeecCCCCCHHHHHHHHHHHHhhCC
Q psy969 6 KVAFKGSNFRTLHGRG-PDSTSY----GNVCNTCGIIMCSAIKHFHK-LSGKKIGLKPAGGISTFEDSVRWIYLVLIMLG 79 (106)
Q Consensus 6 iai~aGadFKTSTG~~-~~gat~----~~~~~~~v~lm~~~i~~~~~-~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lG 79 (106)
.+.++|+||-|=-|.. ..|++. .++-+.-...+.++-+.+.+ ...++|-+=++||++|..|+...+. ||
T Consensus 222 ~~~~ag~D~ItIDG~~GGTGAap~~~~d~~GlP~~~~l~~a~~~L~~~glr~~V~Li~sGgl~t~~dv~kala-----LG 296 (368)
T PF01645_consen 222 GAAKAGADFITIDGAEGGTGAAPLTSMDHVGLPTEYALARAHQALVKNGLRDRVSLIASGGLRTGDDVAKALA-----LG 296 (368)
T ss_dssp HHHHTT-SEEEEE-TT---SSEECCHHHHC---HHHHHHHHHHHHHCTT-CCCSEEEEESS--SHHHHHHHHH-----CT
T ss_pred hhhhccCCEEEEeCCCCCCCCCchhHHhhCCCcHHHHHHHHHHHHHHcCCCCceEEEEeCCccCHHHHHHHHh-----cC
Confidence 3778999995555543 234441 11111123333333322221 1356799999999999999999999 89
Q ss_pred CCccCCCceeEeccch
Q psy969 80 PDWLNKDLFRIGASSL 95 (106)
Q Consensus 80 a~w~~~~~~RiGtSs~ 95 (106)
+| .+-||+..+
T Consensus 297 AD-----~v~igt~~l 307 (368)
T PF01645_consen 297 AD-----AVYIGTAAL 307 (368)
T ss_dssp -S-----EEE-SHHHH
T ss_pred CC-----eeEecchhh
Confidence 96 344555443
No 66
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=92.15 E-value=0.68 Score=36.37 Aligned_cols=25 Identities=36% Similarity=0.619 Sum_probs=22.1
Q ss_pred ceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969 52 KIGLKPAGGISTFEDSVRWIYLVLIMLGPD 81 (106)
Q Consensus 52 ~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~ 81 (106)
++-|=+.|||+|.++|.+++. +|++
T Consensus 234 ~ipvi~~GGI~~~~da~~~l~-----aGAd 258 (301)
T PRK07259 234 DIPIIGMGGISSAEDAIEFIM-----AGAS 258 (301)
T ss_pred CCCEEEECCCCCHHHHHHHHH-----cCCC
Confidence 467888999999999999998 6886
No 67
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=92.15 E-value=0.65 Score=35.23 Aligned_cols=24 Identities=42% Similarity=0.674 Sum_probs=21.2
Q ss_pred eeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969 53 IGLKPAGGISTFEDSVRWIYLVLIMLGPD 81 (106)
Q Consensus 53 vgiKaaGGIrt~~~a~~~i~l~~~~lGa~ 81 (106)
+-|=+.|||++.+++.++++ .|++
T Consensus 72 ~pv~~~GGI~s~~d~~~~l~-----~G~~ 95 (243)
T cd04731 72 IPLTVGGGIRSLEDARRLLR-----AGAD 95 (243)
T ss_pred CCEEEeCCCCCHHHHHHHHH-----cCCc
Confidence 56779999999999999998 6875
No 68
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=92.08 E-value=0.55 Score=39.48 Aligned_cols=28 Identities=32% Similarity=0.463 Sum_probs=24.0
Q ss_pred CCceeEeecCCCCCHHHHHHHHHHHHhhCCCCc
Q psy969 50 GKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDW 82 (106)
Q Consensus 50 ~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~w 82 (106)
..++-|=..|||.|.+||.+||. +||+-
T Consensus 268 ~~~ipIiGvGGI~s~~Da~e~i~-----aGAs~ 295 (385)
T PLN02495 268 PEDRSLSGIGGVETGGDAAEFIL-----LGADT 295 (385)
T ss_pred cCCCcEEEECCCCCHHHHHHHHH-----hCCCc
Confidence 34577889999999999999999 79963
No 69
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=91.76 E-value=0.44 Score=39.24 Aligned_cols=69 Identities=17% Similarity=0.138 Sum_probs=41.8
Q ss_pred hhHHHhhCCCc-ccCCCCCCCCCCCC----CCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhC
Q psy969 4 PRKVAFKGSNF-RTLHGRGPDSTSYG----NVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIML 78 (106)
Q Consensus 4 ~~iai~aGadF-KTSTG~~~~gat~~----~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~l 78 (106)
++.++++|||. +-|-|=+....|.. ......+..+.+ ..+.. ++-|=+.||||+..|+.+.+. +
T Consensus 151 a~~l~~aGad~I~V~~G~G~~~~tr~~~g~g~~~~~l~ai~e----v~~a~--~~pVIadGGIr~~~Di~KALa-----~ 219 (321)
T TIGR01306 151 VRELENAGADATKVGIGPGKVCITKIKTGFGTGGWQLAALRW----CAKAA--RKPIIADGGIRTHGDIAKSIR-----F 219 (321)
T ss_pred HHHHHHcCcCEEEECCCCCccccceeeeccCCCchHHHHHHH----HHHhc--CCeEEEECCcCcHHHHHHHHH-----c
Confidence 56788999999 97755222111100 000112222222 22222 477889999999999999999 7
Q ss_pred CCCcc
Q psy969 79 GPDWL 83 (106)
Q Consensus 79 Ga~w~ 83 (106)
|++.+
T Consensus 220 GAd~V 224 (321)
T TIGR01306 220 GASMV 224 (321)
T ss_pred CCCEE
Confidence 98743
No 70
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=91.74 E-value=0.79 Score=35.50 Aligned_cols=73 Identities=11% Similarity=0.132 Sum_probs=46.9
Q ss_pred hhHHHhhCCCc-ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCCc
Q psy969 4 PRKVAFKGSNF-RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDW 82 (106)
Q Consensus 4 ~~iai~aGadF-KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~w 82 (106)
++.+.++|+|+ --++++....+. .+.+.+ .+ .++-|=+.|||.|.+|+.++++ .|++
T Consensus 158 a~~l~~aG~d~ihv~~~~~g~~ad--------~~~I~~----i~----~~ipVIgnGgI~s~eda~~~l~-----~GaD- 215 (233)
T cd02911 158 ARLIEKAGADIIHVDAMDPGNHAD--------LKKIRD----IS----TELFIIGNNSVTTIESAKEMFS-----YGAD- 215 (233)
T ss_pred HHHHHHhCCCEEEECcCCCCCCCc--------HHHHHH----hc----CCCEEEEECCcCCHHHHHHHHH-----cCCC-
Confidence 46678899999 666766432233 333332 21 3466778999999999999998 5875
Q ss_pred cCCCceeEeccchHHHHHHHH
Q psy969 83 LNKDLFRIGASSLLNNILQEL 103 (106)
Q Consensus 83 ~~~~~~RiGtSs~~~~l~~~l 103 (106)
..-||.. ..+-+.++|
T Consensus 216 ----~VmiGR~-~~p~~~~~~ 231 (233)
T cd02911 216 ----MVSVARA-SLPENIEWL 231 (233)
T ss_pred ----EEEEcCC-CCchHHHHh
Confidence 4456665 444444444
No 71
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=91.64 E-value=1.1 Score=37.58 Aligned_cols=70 Identities=21% Similarity=0.185 Sum_probs=42.8
Q ss_pred hHHHhhCCCc-ccCCCCCCCCCCC-----CCCCchHHHHHHHHHHHHhhhcC-CceeEeecCCCCCHHHHHHHHHHHHhh
Q psy969 5 RKVAFKGSNF-RTLHGRGPDSTSY-----GNVCNTCGIIMCSAIKHFHKLSG-KKIGLKPAGGISTFEDSVRWIYLVLIM 77 (106)
Q Consensus 5 ~iai~aGadF-KTSTG~~~~gat~-----~~~~~~~v~lm~~~i~~~~~~~~-~~vgiKaaGGIrt~~~a~~~i~l~~~~ 77 (106)
+.++++|+|+ .-++|=. ..+. +-|=.+.+.-..++.++|.+..+ +.+-|=++|||++..|+.+.+.
T Consensus 203 ~~~~~aGaDgV~~G~gg~--~~~~~~lg~~~p~~~ai~d~~~a~~~~~~e~g~r~vpVIAdGGI~tg~di~kAlA----- 275 (369)
T TIGR01304 203 LHLMRTGAAGVIVGPGGA--NTTRLVLGIEVPMATAIADVAAARRDYLDETGGRYVHVIADGGIETSGDLVKAIA----- 275 (369)
T ss_pred HHHHHcCCCEEEECCCCC--cccccccCCCCCHHHHHHHHHHHHHHHHHhcCCCCceEEEeCCCCCHHHHHHHHH-----
Confidence 4567789999 7222110 0110 01102234444444455555565 3588899999999999999999
Q ss_pred CCCC
Q psy969 78 LGPD 81 (106)
Q Consensus 78 lGa~ 81 (106)
+|++
T Consensus 276 lGAd 279 (369)
T TIGR01304 276 CGAD 279 (369)
T ss_pred cCCC
Confidence 7986
No 72
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=91.53 E-value=0.98 Score=37.86 Aligned_cols=64 Identities=17% Similarity=0.135 Sum_probs=43.4
Q ss_pred hhHHHhhCCCc--ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969 4 PRKVAFKGSNF--RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD 81 (106)
Q Consensus 4 ~~iai~aGadF--KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~ 81 (106)
++.++++|+|. -..+|=...... +..+..+.+..+ ..++++-|=++||||+-.|+..-+. ||++
T Consensus 238 A~~a~~~Gvd~I~VsnhGGrqld~~-----~~t~~~L~ei~~----av~~~~~vi~dGGIr~G~Dv~KALA-----LGA~ 303 (367)
T PLN02493 238 ARIAIQAGAAGIIVSNHGARQLDYV-----PATISALEEVVK----ATQGRIPVFLDGGVRRGTDVFKALA-----LGAS 303 (367)
T ss_pred HHHHHHcCCCEEEECCCCCCCCCCc-----hhHHHHHHHHHH----HhCCCCeEEEeCCcCcHHHHHHHHH-----cCCC
Confidence 45789999999 544542211111 333444444332 2467788999999999999999999 7996
No 73
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=91.41 E-value=0.93 Score=34.61 Aligned_cols=64 Identities=14% Similarity=0.117 Sum_probs=43.9
Q ss_pred hHHHhhCCCc-ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCCcc
Q psy969 5 RKVAFKGSNF-RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWL 83 (106)
Q Consensus 5 ~iai~aGadF-KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~w~ 83 (106)
..+.+.|+|| |= |-..... ++.++.+++. .++.+-+=+.||| +.+.+.+|++ +|++
T Consensus 118 ~~A~~~Gad~vk~---Fpa~~~G-----~~~l~~l~~~-------~~~~ipvvaiGGI-~~~n~~~~~~-----aGa~-- 174 (206)
T PRK09140 118 FAALRAGAQALKL---FPASQLG-----PAGIKALRAV-------LPPDVPVFAVGGV-TPENLAPYLA-----AGAA-- 174 (206)
T ss_pred HHHHHcCCCEEEE---CCCCCCC-----HHHHHHHHhh-------cCCCCeEEEECCC-CHHHHHHHHH-----CCCe--
Confidence 3577889999 93 3212233 4455555433 2335889999999 8899999999 7995
Q ss_pred CCCceeEeccchH
Q psy969 84 NKDLFRIGASSLL 96 (106)
Q Consensus 84 ~~~~~RiGtSs~~ 96 (106)
.++.+|.+
T Consensus 175 -----~vav~s~l 182 (206)
T PRK09140 175 -----GFGLGSAL 182 (206)
T ss_pred -----EEEEehHh
Confidence 88766654
No 74
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=91.27 E-value=0.5 Score=37.78 Aligned_cols=36 Identities=19% Similarity=0.221 Sum_probs=28.0
Q ss_pred chHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969 32 NTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD 81 (106)
Q Consensus 32 ~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~ 81 (106)
.+.++-|++. -.+-|-.-|||||.+++..|++ +|.+
T Consensus 64 ~~~i~~i~~~---------~~~~vQvGGGIRs~~~v~~ll~-----~G~~ 99 (241)
T COG0106 64 LEAIKEILEA---------TDVPVQVGGGIRSLEDVEALLD-----AGVA 99 (241)
T ss_pred HHHHHHHHHh---------CCCCEEeeCCcCCHHHHHHHHH-----CCCC
Confidence 5666666654 2455666799999999999999 7986
No 75
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=91.18 E-value=1 Score=36.37 Aligned_cols=25 Identities=32% Similarity=0.438 Sum_probs=23.0
Q ss_pred ceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969 52 KIGLKPAGGISTFEDSVRWIYLVLIMLGPD 81 (106)
Q Consensus 52 ~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~ 81 (106)
++-|=++||||+..|+.+.+. +|++
T Consensus 255 ~ipIiasGGIr~~~dv~kal~-----lGAd 279 (326)
T cd02811 255 DLPLIASGGIRNGLDIAKALA-----LGAD 279 (326)
T ss_pred CCcEEEECCCCCHHHHHHHHH-----hCCC
Confidence 688999999999999999999 6986
No 76
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=91.14 E-value=0.88 Score=36.63 Aligned_cols=60 Identities=17% Similarity=0.078 Sum_probs=44.8
Q ss_pred hHHHhhCCCc-ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCCcc
Q psy969 5 RKVAFKGSNF-RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWL 83 (106)
Q Consensus 5 ~iai~aGadF-KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~w~ 83 (106)
+.|.++|+|| .-. +-+ ++.++...+.+ ++++-+=+|||| |.+.+.+|.+ .|++
T Consensus 203 ~eA~~~gaD~I~LD------~~~-----~e~l~~~v~~~-------~~~i~leAsGGI-t~~ni~~~a~-----tGvD-- 256 (277)
T PRK05742 203 RQALAAGADIVMLD------ELS-----LDDMREAVRLT-------AGRAKLEASGGI-NESTLRVIAE-----TGVD-- 256 (277)
T ss_pred HHHHHcCCCEEEEC------CCC-----HHHHHHHHHHh-------CCCCcEEEECCC-CHHHHHHHHH-----cCCC--
Confidence 4577889999 542 345 77666655443 367889999999 6999999999 7996
Q ss_pred CCCceeEeccch
Q psy969 84 NKDLFRIGASSL 95 (106)
Q Consensus 84 ~~~~~RiGtSs~ 95 (106)
.|.+|++
T Consensus 257 -----~Isvg~l 263 (277)
T PRK05742 257 -----YISIGAM 263 (277)
T ss_pred -----EEEEChh
Confidence 7777664
No 77
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=90.86 E-value=1.3 Score=34.74 Aligned_cols=57 Identities=21% Similarity=0.148 Sum_probs=34.4
Q ss_pred CCCc-ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969 11 GSNF-RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD 81 (106)
Q Consensus 11 GadF-KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~ 81 (106)
|..| -|++|+...... ..+++....+.+++ ..+.++ =+-|||+|.+++.++++ +|+|
T Consensus 165 gfiy~vs~~G~TG~~~~----~~~~~~~~i~~lr~---~~~~pi--~vgfGI~~~e~~~~~~~-----~GAD 222 (256)
T TIGR00262 165 GFVYLVSRAGVTGARNR----AASALNELVKRLKA---YSAKPV--LVGFGISKPEQVKQAID-----AGAD 222 (256)
T ss_pred CCEEEEECCCCCCCccc----CChhHHHHHHHHHh---hcCCCE--EEeCCCCCHHHHHHHHH-----cCCC
Confidence 4556 787777533211 13333333333333 234444 45789999999999999 7886
No 78
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=90.82 E-value=0.77 Score=36.07 Aligned_cols=48 Identities=19% Similarity=0.184 Sum_probs=32.7
Q ss_pred ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969 15 RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD 81 (106)
Q Consensus 15 KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~ 81 (106)
--|.|++ .+.+ ++.++.+++.. +.+-|=.-|||||.+|+.++++ +|++
T Consensus 156 E~gs~~g-~~v~-----~e~i~~v~~~~--------~~~pl~vGGGIrs~e~a~~l~~-----aGAD 203 (223)
T TIGR01768 156 EAGSGAP-EPVP-----PELVAEVKKVL--------DKARLFVGGGIRSVEKAREMAE-----AGAD 203 (223)
T ss_pred EecCCCC-CCcC-----HHHHHHHHHHc--------CCCCEEEecCCCCHHHHHHHHH-----cCCC
Confidence 3455553 3355 56676666542 1355555899999999999999 6986
No 79
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=90.73 E-value=0.77 Score=35.47 Aligned_cols=34 Identities=21% Similarity=0.381 Sum_probs=27.1
Q ss_pred ceeEeecCCCCCHHHHHHHHHHHHhhCCCCccCCCceeEeccch
Q psy969 52 KIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGASSL 95 (106)
Q Consensus 52 ~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~w~~~~~~RiGtSs~ 95 (106)
.+-|=++|||||.+|+.++++ +|++ ..-||+...
T Consensus 73 ~~pv~~gGGIrs~edv~~l~~-----~G~~-----~vivGtaa~ 106 (228)
T PRK04128 73 GLKVQVGGGLRTYESIKDAYE-----IGVE-----NVIIGTKAF 106 (228)
T ss_pred CCCEEEcCCCCCHHHHHHHHH-----CCCC-----EEEECchhc
Confidence 466789999999999999999 6885 335687655
No 80
>COG0069 GltB Glutamate synthase domain 2 [Amino acid transport and metabolism]
Probab=90.45 E-value=0.8 Score=39.93 Aligned_cols=78 Identities=23% Similarity=0.199 Sum_probs=47.9
Q ss_pred HHhhCCCcccCCCCC-CCCCCC-------CCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhC
Q psy969 7 VAFKGSNFRTLHGRG-PDSTSY-------GNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIML 78 (106)
Q Consensus 7 ai~aGadFKTSTG~~-~~gat~-------~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~l 78 (106)
+.+++|||-|=.|+. ..||+. |.|=...+..--+.+... ...+++.|=++||+||..|+..-+. |
T Consensus 323 vakA~AD~I~IdG~~GGTGAsP~~~~~~~GiP~e~glae~~q~L~~~--glRd~v~l~~~Ggl~Tg~DVaka~a-----L 395 (485)
T COG0069 323 VAKAGADVITIDGADGGTGASPLTSIDHAGIPWELGLAETHQTLVLN--GLRDKVKLIADGGLRTGADVAKAAA-----L 395 (485)
T ss_pred hhhccCCEEEEcCCCCcCCCCcHhHhhcCCchHHHHHHHHHHHHHHc--CCcceeEEEecCCccCHHHHHHHHH-----h
Confidence 678999996666763 345551 111111122222222211 1357899999999999999999988 7
Q ss_pred CCCccCCCceeEeccchH
Q psy969 79 GPDWLNKDLFRIGASSLL 96 (106)
Q Consensus 79 Ga~w~~~~~~RiGtSs~~ 96 (106)
|+|| |-|||-.++
T Consensus 396 GAd~-----v~~gTa~li 408 (485)
T COG0069 396 GADA-----VGFGTAALV 408 (485)
T ss_pred Ccch-----hhhchHHHH
Confidence 9974 455554443
No 81
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=90.41 E-value=0.86 Score=39.37 Aligned_cols=63 Identities=13% Similarity=0.143 Sum_probs=41.0
Q ss_pred hhhHHHhhCCCc-ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969 3 RPRKVAFKGSNF-RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD 81 (106)
Q Consensus 3 ~~~iai~aGadF-KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~ 81 (106)
+++..+++|+|+ --. ..++.+ .- +.+.|+..++..+.++-|++ |-|-|.++|+.+++ +|++
T Consensus 246 ra~~Lv~aGvd~i~vd---~a~g~~-----~~----~~~~i~~ir~~~~~~~~V~a-GnV~t~e~a~~li~-----aGAd 307 (502)
T PRK07107 246 RVPALVEAGADVLCID---SSEGYS-----EW----QKRTLDWIREKYGDSVKVGA-GNVVDREGFRYLAE-----AGAD 307 (502)
T ss_pred HHHHHHHhCCCeEeec---Cccccc-----HH----HHHHHHHHHHhCCCCceEEe-ccccCHHHHHHHHH-----cCCC
Confidence 466788899999 311 122232 11 12333333333555688888 99999999999999 7998
Q ss_pred cc
Q psy969 82 WL 83 (106)
Q Consensus 82 w~ 83 (106)
++
T Consensus 308 ~I 309 (502)
T PRK07107 308 FV 309 (502)
T ss_pred EE
Confidence 64
No 82
>PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P). This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B.
Probab=90.24 E-value=0.47 Score=37.53 Aligned_cols=39 Identities=26% Similarity=0.243 Sum_probs=27.5
Q ss_pred hHH-HHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969 33 TCG-IIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD 81 (106)
Q Consensus 33 ~~v-~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~ 81 (106)
.++ ..|.++.+.. ..+-+=..|||||.++|.++.+ .|+|
T Consensus 167 ~~v~~~v~~~~~~~-----~~~~LivGGGIrs~e~A~~~~~-----aGAD 206 (230)
T PF01884_consen 167 GPVPEEVIAAVKKL-----SDIPLIVGGGIRSPEQAREMAE-----AGAD 206 (230)
T ss_dssp S-HHHHHHHHHHHS-----SSSEEEEESS--SHHHHHHHHC-----TTSS
T ss_pred CCccHHHHHHHHhc-----CCccEEEeCCcCCHHHHHHHHH-----CCCC
Confidence 344 6666655432 5677888899999999999999 7997
No 83
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=89.84 E-value=1.5 Score=34.90 Aligned_cols=62 Identities=19% Similarity=0.196 Sum_probs=42.7
Q ss_pred HHHhhCCCc-ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCCccC
Q psy969 6 KVAFKGSNF-RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLN 84 (106)
Q Consensus 6 iai~aGadF-KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~w~~ 84 (106)
.|.++|+|| +-.+= . +++++.+.+.++. ..+++-+=++||| +.+.+.+|.+ .|++
T Consensus 198 ~A~~~gaD~I~ld~~------~-----p~~l~~~~~~~~~----~~~~i~i~AsGGI-~~~ni~~~~~-----~Gvd--- 253 (272)
T cd01573 198 AAAEAGADILQLDKF------S-----PEELAELVPKLRS----LAPPVLLAAAGGI-NIENAAAYAA-----AGAD--- 253 (272)
T ss_pred HHHHcCCCEEEECCC------C-----HHHHHHHHHHHhc----cCCCceEEEECCC-CHHHHHHHHH-----cCCc---
Confidence 467889999 75532 2 4455544444432 1246889999999 8999999999 7996
Q ss_pred CCceeEeccch
Q psy969 85 KDLFRIGASSL 95 (106)
Q Consensus 85 ~~~~RiGtSs~ 95 (106)
.|..|+.
T Consensus 254 ----~I~vsai 260 (272)
T cd01573 254 ----ILVTSAP 260 (272)
T ss_pred ----EEEEChh
Confidence 6655543
No 84
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=89.64 E-value=1.5 Score=32.76 Aligned_cols=67 Identities=25% Similarity=0.133 Sum_probs=40.0
Q ss_pred hHHHhhCCCc--ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCCc
Q psy969 5 RKVAFKGSNF--RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDW 82 (106)
Q Consensus 5 ~iai~aGadF--KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~w 82 (106)
+.+.+.|+|| -|++-.. .. ..+...+.+..+ ..+..+-|=+.|||++.+++.++++ +|++
T Consensus 135 ~~~~~~g~~~i~~t~~~~~---~~-----~~~~~~~~~l~~----~~~~~~pvia~gGI~s~edi~~~~~-----~Ga~- 196 (217)
T cd00331 135 ERALALGAKIIGINNRDLK---TF-----EVDLNTTERLAP----LIPKDVILVSESGISTPEDVKRLAE-----AGAD- 196 (217)
T ss_pred HHHHHcCCCEEEEeCCCcc---cc-----CcCHHHHHHHHH----hCCCCCEEEEEcCCCCHHHHHHHHH-----cCCC-
Confidence 4567789999 5533211 11 223344433322 2234466677899999999999999 6875
Q ss_pred cCCCceeEecc
Q psy969 83 LNKDLFRIGAS 93 (106)
Q Consensus 83 ~~~~~~RiGtS 93 (106)
..-+|++
T Consensus 197 ----gvivGsa 203 (217)
T cd00331 197 ----AVLIGES 203 (217)
T ss_pred ----EEEECHH
Confidence 3445554
No 85
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=89.52 E-value=1.3 Score=33.15 Aligned_cols=62 Identities=24% Similarity=0.329 Sum_probs=40.9
Q ss_pred HHHhhCCCc-ccCCCCCCCCCCCCCCC-chHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCCcc
Q psy969 6 KVAFKGSNF-RTLHGRGPDSTSYGNVC-NTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWL 83 (106)
Q Consensus 6 iai~aGadF-KTSTG~~~~gat~~~~~-~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~w~ 83 (106)
.|.+.|+|| |- | |. .+ ++ ++-++.++.. . +.+-|=|.||| |.+.+.+|++ +|+
T Consensus 120 ~A~~~Gadyv~~---F-pt-~~---~~G~~~l~~~~~~-------~-~~ipvvaiGGI-~~~n~~~~l~-----aGa--- 174 (187)
T PRK07455 120 TAWQAGASCVKV---F-PV-QA---VGGADYIKSLQGP-------L-GHIPLIPTGGV-TLENAQAFIQ-----AGA--- 174 (187)
T ss_pred HHHHCCCCEEEE---C-cC-Cc---ccCHHHHHHHHhh-------C-CCCcEEEeCCC-CHHHHHHHHH-----CCC---
Confidence 466789999 95 4 32 11 11 3333333322 1 35789999999 7799999999 798
Q ss_pred CCCceeEeccchH
Q psy969 84 NKDLFRIGASSLL 96 (106)
Q Consensus 84 ~~~~~RiGtSs~~ 96 (106)
.-++.+|.+
T Consensus 175 ----~~vav~s~i 183 (187)
T PRK07455 175 ----IAVGLSGQL 183 (187)
T ss_pred ----eEEEEehhc
Confidence 478777654
No 86
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=89.51 E-value=1.4 Score=37.87 Aligned_cols=64 Identities=11% Similarity=0.035 Sum_probs=41.3
Q ss_pred hhHHHhhCCCc-c--------cCCCCC-CCC-CCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHH
Q psy969 4 PRKVAFKGSNF-R--------TLHGRG-PDS-TSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIY 72 (106)
Q Consensus 4 ~~iai~aGadF-K--------TSTG~~-~~g-at~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~ 72 (106)
++.++++|||+ | +.|-.. ..| .+ ...+....+++++ ..+-|=|.||||+..|...-+.
T Consensus 280 ~~~l~~~G~d~i~vg~g~Gs~~ttr~~~~~g~~~-----~~a~~~~~~~~~~------~~~~viadGgi~~~~di~kala 348 (475)
T TIGR01303 280 VRDLLEAGANIIKVGVGPGAMCTTRMMTGVGRPQ-----FSAVLECAAEARK------LGGHVWADGGVRHPRDVALALA 348 (475)
T ss_pred HHHHHHhCCCEEEECCcCCccccCccccCCCCch-----HHHHHHHHHHHHH------cCCcEEEeCCCCCHHHHHHHHH
Confidence 45678999999 9 222211 111 22 3344444444432 2477889999999999999999
Q ss_pred HHHhhCCCCcc
Q psy969 73 LVLIMLGPDWL 83 (106)
Q Consensus 73 l~~~~lGa~w~ 83 (106)
+|++++
T Consensus 349 -----~GA~~v 354 (475)
T TIGR01303 349 -----AGASNV 354 (475)
T ss_pred -----cCCCEE
Confidence 799754
No 87
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=89.50 E-value=1.3 Score=36.27 Aligned_cols=24 Identities=33% Similarity=0.545 Sum_probs=20.4
Q ss_pred eeEe--ecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969 53 IGLK--PAGGISTFEDSVRWIYLVLIMLGPD 81 (106)
Q Consensus 53 vgiK--aaGGIrt~~~a~~~i~l~~~~lGa~ 81 (106)
+-|= +.|||.|++++..+++ +|++
T Consensus 198 iPVV~fAiGGI~TPedAa~~me-----lGAd 223 (287)
T TIGR00343 198 LPVVNFAAGGVATPADAALMMQ-----LGAD 223 (287)
T ss_pred CCEEEeccCCCCCHHHHHHHHH-----cCCC
Confidence 4444 7899999999999999 7986
No 88
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=89.45 E-value=2 Score=35.52 Aligned_cols=80 Identities=15% Similarity=0.100 Sum_probs=53.1
Q ss_pred hhhHHHhhCCCc---ccCCCCC------C----CCCCCCCCCch-HHHHHHHHHHHHhhhcCC--ceeEeecC-------
Q psy969 3 RPRKVAFKGSNF---RTLHGRG------P----DSTSYGNVCNT-CGIIMCSAIKHFHKLSGK--KIGLKPAG------- 59 (106)
Q Consensus 3 ~~~iai~aGadF---KTSTG~~------~----~gat~~~~~~~-~v~lm~~~i~~~~~~~~~--~vgiKaaG------- 59 (106)
+++.|.++|.|. .-..||- | ..--||.. ++ ..+++++.++..++.+++ .|+||.++
T Consensus 149 AA~~a~~aGfDgVeih~ahGyLl~qFLSp~~N~RtDeYGGs-lenR~Rf~~eii~air~~vG~d~~v~vRis~~~~~~~~ 227 (361)
T cd04747 149 AAADARRLGFDGIELHGAHGYLIDQFFWAGTNRRADGYGGS-LAARSRFAAEVVKAIRAAVGPDFPIILRFSQWKQQDYT 227 (361)
T ss_pred HHHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCC-HHHHHHHHHHHHHHHHHHcCCCCeEEEEECcccccccc
Confidence 567888899998 4455531 1 11112211 44 588888888888888864 59999995
Q ss_pred --CCCCHHHHHHHHHHHHhhCCCCccC
Q psy969 60 --GISTFEDSVRWIYLVLIMLGPDWLN 84 (106)
Q Consensus 60 --GIrt~~~a~~~i~l~~~~lGa~w~~ 84 (106)
|-.|+++..+++...++ +|.++++
T Consensus 228 ~~~g~~~~e~~~~~~~l~~-~gvd~i~ 253 (361)
T cd04747 228 ARLADTPDELEALLAPLVD-AGVDIFH 253 (361)
T ss_pred cCCCCCHHHHHHHHHHHHH-cCCCEEE
Confidence 12688888888776544 5877653
No 89
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=89.35 E-value=0.85 Score=37.58 Aligned_cols=27 Identities=26% Similarity=0.404 Sum_probs=23.2
Q ss_pred ceeEeecCCCCCHHHHHHHHHHHHhhCCCCcc
Q psy969 52 KIGLKPAGGISTFEDSVRWIYLVLIMLGPDWL 83 (106)
Q Consensus 52 ~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~w~ 83 (106)
++-|=+.|||++..|+.+.+. +|++.+
T Consensus 201 ~ipVIAdGGI~~~~Di~KaLa-----~GA~aV 227 (326)
T PRK05458 201 RKPIIADGGIRTHGDIAKSIR-----FGATMV 227 (326)
T ss_pred CCCEEEeCCCCCHHHHHHHHH-----hCCCEE
Confidence 366789999999999999999 698744
No 90
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=89.30 E-value=1.1 Score=34.61 Aligned_cols=24 Identities=21% Similarity=0.206 Sum_probs=21.2
Q ss_pred eeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969 53 IGLKPAGGISTFEDSVRWIYLVLIMLGPD 81 (106)
Q Consensus 53 vgiKaaGGIrt~~~a~~~i~l~~~~lGa~ 81 (106)
+-|=+.|||||+|++..+++ +|++
T Consensus 76 ~pv~vgGGirs~edv~~~l~-----~Ga~ 99 (241)
T PRK14024 76 VKVELSGGIRDDESLEAALA-----TGCA 99 (241)
T ss_pred CCEEEcCCCCCHHHHHHHHH-----CCCC
Confidence 55668999999999999999 7996
No 91
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=89.26 E-value=2.3 Score=32.61 Aligned_cols=34 Identities=29% Similarity=0.622 Sum_probs=26.6
Q ss_pred eeEeecCCCCCHHHHHHHHHHHHhhCCCCccCCCceeEeccchH
Q psy969 53 IGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGASSLL 96 (106)
Q Consensus 53 vgiKaaGGIrt~~~a~~~i~l~~~~lGa~w~~~~~~RiGtSs~~ 96 (106)
+.+=+-||||+++++.+|++ +|++ ..-|||+..-
T Consensus 79 ~~v~vgGGir~~edv~~~l~-----~Ga~-----~viigt~~~~ 112 (233)
T cd04723 79 LGLWVDGGIRSLENAQEWLK-----RGAS-----RVIVGTETLP 112 (233)
T ss_pred CCEEEecCcCCHHHHHHHHH-----cCCC-----eEEEcceecc
Confidence 55668899999999999999 7974 3346877643
No 92
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=88.93 E-value=2.7 Score=34.27 Aligned_cols=78 Identities=17% Similarity=0.250 Sum_probs=53.1
Q ss_pred hhhHHHhhCCCc-cc--CCCC------CC----CCCCCCCCCch-HHHHHHHHHHHHhhhcCCceeEeecC------CCC
Q psy969 3 RPRKVAFKGSNF-RT--LHGR------GP----DSTSYGNVCNT-CGIIMCSAIKHFHKLSGKKIGLKPAG------GIS 62 (106)
Q Consensus 3 ~~~iai~aGadF-KT--STG~------~~----~gat~~~~~~~-~v~lm~~~i~~~~~~~~~~vgiKaaG------GIr 62 (106)
+++.|.++|.|. -= ..|| +| ..-.||.. ++ ..+++++.++..++..+..++||.+. |+
T Consensus 147 aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~RtD~yGGs-lenR~Rf~~eii~~ir~~~~~~v~vRis~~d~~~~G~- 224 (337)
T PRK13523 147 AAVRAKEAGFDVIEIHGAHGYLINEFLSPLSNKRTDEYGGS-PENRYRFLREIIDAVKEVWDGPLFVRISASDYHPGGL- 224 (337)
T ss_pred HHHHHHHcCCCEEEEccccchHHHHhcCCccCCcCCCCCCC-HHHHHHHHHHHHHHHHHhcCCCeEEEecccccCCCCC-
Confidence 467788899998 43 4443 12 11222222 44 58888888888877777789999986 43
Q ss_pred CHHHHHHHHHHHHhhCCCCcc
Q psy969 63 TFEDSVRWIYLVLIMLGPDWL 83 (106)
Q Consensus 63 t~~~a~~~i~l~~~~lGa~w~ 83 (106)
+.++++++++..++ .|.||+
T Consensus 225 ~~~e~~~i~~~l~~-~gvD~i 244 (337)
T PRK13523 225 TVQDYVQYAKWMKE-QGVDLI 244 (337)
T ss_pred CHHHHHHHHHHHHH-cCCCEE
Confidence 68888888877655 688875
No 93
>PRK11197 lldD L-lactate dehydrogenase; Provisional
Probab=88.93 E-value=2 Score=36.14 Aligned_cols=65 Identities=18% Similarity=0.112 Sum_probs=42.1
Q ss_pred hhHHHhhCCCc-ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969 4 PRKVAFKGSNF-RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD 81 (106)
Q Consensus 4 ~~iai~aGadF-KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~ 81 (106)
++.+++.|+|. .-|.- +|.. -...+..+..+.+..+ ..+.++-|=++||||+-.|+..-+. ||++
T Consensus 259 A~~a~~~Gvd~I~Vs~h---GGr~-~d~~~~t~~~L~~i~~----a~~~~~~vi~dGGIr~g~Di~KALa-----LGA~ 324 (381)
T PRK11197 259 ARDAVRFGADGIVVSNH---GGRQ-LDGVLSSARALPAIAD----AVKGDITILADSGIRNGLDVVRMIA-----LGAD 324 (381)
T ss_pred HHHHHhCCCCEEEECCC---CCCC-CCCcccHHHHHHHHHH----HhcCCCeEEeeCCcCcHHHHHHHHH-----cCcC
Confidence 46789999999 65531 1222 0011333343333322 2356789999999999999999999 7986
No 94
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=88.68 E-value=2 Score=33.25 Aligned_cols=57 Identities=19% Similarity=0.194 Sum_probs=38.8
Q ss_pred hHHHhhCCCc---ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969 5 RKVAFKGSNF---RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD 81 (106)
Q Consensus 5 ~iai~aGadF---KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~ 81 (106)
..+-..|+++ .-++|+. ...+ ++-++.+++.+ ++-+=.-|||||.+++.++++ .|+|
T Consensus 141 ~aa~~~G~~~i~Le~~sGa~-~~v~-----~e~i~~Vk~~~---------~~Pv~vGGGIrs~e~a~~l~~-----~GAD 200 (205)
T TIGR01769 141 LAAKYFGMKWVYLEAGSGAS-YPVN-----PETISLVKKAS---------GIPLIVGGGIRSPEIAYEIVL-----AGAD 200 (205)
T ss_pred HHHHHcCCCEEEEEcCCCCC-CCCC-----HHHHHHHHHhh---------CCCEEEeCCCCCHHHHHHHHH-----cCCC
Confidence 3445668886 5667773 3345 56566665542 355667799999999999988 5775
No 95
>cd01571 NAPRTase_B Nicotinate phosphoribosyltransferase (NAPRTase), subgroup B. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products.
Probab=88.61 E-value=1.2 Score=35.87 Aligned_cols=52 Identities=19% Similarity=0.183 Sum_probs=41.0
Q ss_pred CCCCCCCCCchHHHHHHHHHHHHhhhcC-CceeEeecCCCCCHHHHHHHHHHHHhhCCCCccCCCceeEeccchH
Q psy969 23 DSTSYGNVCNTCGIIMCSAIKHFHKLSG-KKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGASSLL 96 (106)
Q Consensus 23 ~gat~~~~~~~~v~lm~~~i~~~~~~~~-~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~w~~~~~~RiGtSs~~ 96 (106)
.|.+ ++.++.++++++. .+ +++.|=+|||| |.+.+.+|.+ .|.| .||.++++
T Consensus 224 ~G~~-----~~~~~~~~~~l~~----~g~~~~~ieaSGgI-~~~~i~~~a~-----~gvD-------~isvGs~~ 276 (302)
T cd01571 224 RGVF-----RYLIREVRWALDI----RGYKHVKIFVSGGL-DEEDIKELED-----VGVD-------AFGVGTAI 276 (302)
T ss_pred CCCH-----HHHHHHHHHHHHh----CCCCCeEEEEeCCC-CHHHHHHHHH-----cCCC-------EEECCccc
Confidence 4567 8888888888754 33 67899999999 9999999999 7886 77766543
No 96
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=88.27 E-value=1.6 Score=36.29 Aligned_cols=61 Identities=15% Similarity=0.160 Sum_probs=38.5
Q ss_pred hHHHhhCCCc-ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCCc
Q psy969 5 RKVAFKGSNF-RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDW 82 (106)
Q Consensus 5 ~iai~aGadF-KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~w 82 (106)
+.+.+.|+|| +...||...... +.....+++..+ .. .+-|=+.||| +.+.+.++++ .|++.
T Consensus 125 ~~a~~~GaD~I~~~pg~~~~~~~-----~~~~~~l~~l~~----~~--~iPI~a~GGI-~~~n~~~~l~-----aGAdg 186 (430)
T PRK07028 125 VELEELGVDYINVHVGIDQQMLG-----KDPLELLKEVSE----EV--SIPIAVAGGL-DAETAAKAVA-----AGADI 186 (430)
T ss_pred HHHHhcCCCEEEEEeccchhhcC-----CChHHHHHHHHh----hC--CCcEEEECCC-CHHHHHHHHH-----cCCCE
Confidence 4567889999 988887421111 222333333221 11 2567789999 6889999999 79863
No 97
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=87.70 E-value=3.4 Score=28.40 Aligned_cols=26 Identities=35% Similarity=0.540 Sum_probs=22.3
Q ss_pred CceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969 51 KKIGLKPAGGISTFEDSVRWIYLVLIMLGPD 81 (106)
Q Consensus 51 ~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~ 81 (106)
.++-|=++|||++.+++.++++ .|++
T Consensus 169 ~~~pi~~~GGi~~~~~~~~~~~-----~Gad 194 (200)
T cd04722 169 SKVPVIAGGGINDPEDAAEALA-----LGAD 194 (200)
T ss_pred CCCCEEEECCCCCHHHHHHHHH-----hCCC
Confidence 4567888999999999999999 5885
No 98
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=87.68 E-value=2.7 Score=34.16 Aligned_cols=64 Identities=16% Similarity=0.204 Sum_probs=44.6
Q ss_pred hHHHhhCCCc-ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCCcc
Q psy969 5 RKVAFKGSNF-RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWL 83 (106)
Q Consensus 5 ~iai~aGadF-KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~w~ 83 (106)
+.++++|+|. .= .+-+ ++.++...+.+++ ..+++-|=+|||| |.+.+.+|.+ +|+|
T Consensus 213 ~eal~~gaDiI~L------Dnm~-----~e~vk~av~~~~~----~~~~v~ieaSGGI-~~~ni~~yA~-----tGvD-- 269 (289)
T PRK07896 213 DEVLAEGAELVLL------DNFP-----VWQTQEAVQRRDA----RAPTVLLESSGGL-TLDTAAAYAE-----TGVD-- 269 (289)
T ss_pred HHHHHcCCCEEEe------CCCC-----HHHHHHHHHHHhc----cCCCEEEEEECCC-CHHHHHHHHh-----cCCC--
Confidence 3466778887 41 1344 6666665554432 3578999999999 5788899999 7997
Q ss_pred CCCceeEeccchH
Q psy969 84 NKDLFRIGASSLL 96 (106)
Q Consensus 84 ~~~~~RiGtSs~~ 96 (106)
.|.+|++.
T Consensus 270 -----~Is~galt 277 (289)
T PRK07896 270 -----YLAVGALT 277 (289)
T ss_pred -----EEEeChhh
Confidence 88777643
No 99
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=87.64 E-value=3.1 Score=30.31 Aligned_cols=62 Identities=19% Similarity=0.110 Sum_probs=36.8
Q ss_pred hHHHhhCCCc-ccCCCCCCCCCCCC--CCC-chHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCC
Q psy969 5 RKVAFKGSNF-RTLHGRGPDSTSYG--NVC-NTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGP 80 (106)
Q Consensus 5 ~iai~aGadF-KTSTG~~~~gat~~--~~~-~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa 80 (106)
+.+.+.|+|| +-+.-| |.....+ .+- ++.++.+++. . +++-|=+.||| +.+++.++++ +|+
T Consensus 118 ~~a~~~gaD~v~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~-------~-~~~~v~a~GGI-~~~~i~~~~~-----~Ga 182 (212)
T PRK00043 118 AAALAAGADYVGVGPIF-PTPTKKDAKAPQGLEGLREIRAA-------V-GDIPIVAIGGI-TPENAPEVLE-----AGA 182 (212)
T ss_pred HHHhHcCCCEEEECCcc-CCCCCCCCCCCCCHHHHHHHHHh-------c-CCCCEEEECCc-CHHHHHHHHH-----cCC
Confidence 4566789999 866433 2221100 000 2334444332 2 23778899999 6899999999 788
Q ss_pred C
Q psy969 81 D 81 (106)
Q Consensus 81 ~ 81 (106)
+
T Consensus 183 ~ 183 (212)
T PRK00043 183 D 183 (212)
T ss_pred C
Confidence 6
No 100
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=87.56 E-value=2.2 Score=32.98 Aligned_cols=33 Identities=18% Similarity=0.363 Sum_probs=26.3
Q ss_pred eeEeecCCCCCHHHHHHHHHHHHhhCCCCccCCCceeEeccch
Q psy969 53 IGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGASSL 95 (106)
Q Consensus 53 vgiKaaGGIrt~~~a~~~i~l~~~~lGa~w~~~~~~RiGtSs~ 95 (106)
+-|=+-|||||+|++..+++ +|++ ..-|||...
T Consensus 77 ~pi~vGGGIrs~e~v~~~l~-----~Ga~-----kvvigt~a~ 109 (234)
T PRK13587 77 KDIEVGGGIRTKSQIMDYFA-----AGIN-----YCIVGTKGI 109 (234)
T ss_pred CeEEEcCCcCCHHHHHHHHH-----CCCC-----EEEECchHh
Confidence 56778899999999999999 7985 334677654
No 101
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=87.52 E-value=1.9 Score=34.54 Aligned_cols=30 Identities=27% Similarity=0.531 Sum_probs=24.9
Q ss_pred ceeEeecCCCCCHHHHHHHHHHHHhhCCCCccCCCceeEeccc
Q psy969 52 KIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGASS 94 (106)
Q Consensus 52 ~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~w~~~~~~RiGtSs 94 (106)
.+.|=+.||||+ +++..|++ +|++ |++-+|
T Consensus 76 ~~~v~vGGGIr~-e~v~~~l~-----aGa~-------rVvIGS 105 (253)
T TIGR02129 76 PGGLQVGGGIND-TNAQEWLD-----EGAS-------HVIVTS 105 (253)
T ss_pred CCCEEEeCCcCH-HHHHHHHH-----cCCC-------EEEECc
Confidence 377888999998 99999999 7996 765554
No 102
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=87.25 E-value=4.1 Score=33.53 Aligned_cols=76 Identities=16% Similarity=0.140 Sum_probs=51.9
Q ss_pred hhhHHHhhCCCc---ccCCCCC------C--------CCCCCCCCCch-HHHHHHHHHHHHhhhcCC-ceeEeecC----
Q psy969 3 RPRKVAFKGSNF---RTLHGRG------P--------DSTSYGNVCNT-CGIIMCSAIKHFHKLSGK-KIGLKPAG---- 59 (106)
Q Consensus 3 ~~~iai~aGadF---KTSTG~~------~--------~gat~~~~~~~-~v~lm~~~i~~~~~~~~~-~vgiKaaG---- 59 (106)
+++.|.+||.|. --..||- | .|-+ +| -.++++|.+++.++..++ .|++|.|+
T Consensus 164 AA~rA~~AGfDGVEIh~ahGyLl~qFLSp~~N~RtDeYGGs-----lENR~Rf~~Eiv~aVr~~vg~~~igvRis~~~~~ 238 (362)
T PRK10605 164 AIANAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGS-----VENRARLVLEVVDAGIAEWGADRIGIRISPLGTF 238 (362)
T ss_pred HHHHHHHcCCCEEEEcccccchHHHhcCCcCCCCCCcCCCc-----HHHHHHHHHHHHHHHHHHcCCCeEEEEECCcccc
Confidence 577899999999 4466643 1 1334 55 388888888888777764 69999974
Q ss_pred -CC---CCHHH-HHHHHHHHHhhCCCCccC
Q psy969 60 -GI---STFED-SVRWIYLVLIMLGPDWLN 84 (106)
Q Consensus 60 -GI---rt~~~-a~~~i~l~~~~lGa~w~~ 84 (106)
++ .+.++ +++++...++ .|.|+++
T Consensus 239 ~~~~~G~~~~e~~~~~~~~L~~-~giD~i~ 267 (362)
T PRK10605 239 NNVDNGPNEEADALYLIEQLGK-RGIAYLH 267 (362)
T ss_pred ccCCCCCCHHHHHHHHHHHHHH-cCCCEEE
Confidence 12 46666 7888776654 5777764
No 103
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=87.23 E-value=2.6 Score=32.44 Aligned_cols=62 Identities=18% Similarity=0.322 Sum_probs=42.1
Q ss_pred hHHHhhCCCc-ccCCCCCCCC-CCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCCc
Q psy969 5 RKVAFKGSNF-RTLHGRGPDS-TSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDW 82 (106)
Q Consensus 5 ~iai~aGadF-KTSTG~~~~g-at~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~w 82 (106)
..|.++|+|| |= | |.+ .. ++.++.++.. . +.+-+=+.|||. .+.+.+|++ +|++
T Consensus 123 ~~A~~~Gad~vkl---F-Pa~~~G-----~~~ik~l~~~-------~-p~ip~~atGGI~-~~N~~~~l~-----aGa~- 178 (213)
T PRK06552 123 VTALEAGSEIVKL---F-PGSTLG-----PSFIKAIKGP-------L-PQVNVMVTGGVN-LDNVKDWFA-----AGAD- 178 (213)
T ss_pred HHHHHcCCCEEEE---C-CcccCC-----HHHHHHHhhh-------C-CCCEEEEECCCC-HHHHHHHHH-----CCCc-
Confidence 3577899999 94 3 322 22 4445544432 2 457788999998 799999999 7985
Q ss_pred cCCCceeEeccchH
Q psy969 83 LNKDLFRIGASSLL 96 (106)
Q Consensus 83 ~~~~~~RiGtSs~~ 96 (106)
-++.+|.+
T Consensus 179 ------~vavgs~l 186 (213)
T PRK06552 179 ------AVGIGGEL 186 (213)
T ss_pred ------EEEEchHH
Confidence 77776544
No 104
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=86.94 E-value=3 Score=33.13 Aligned_cols=60 Identities=18% Similarity=0.217 Sum_probs=42.7
Q ss_pred hHHHhhCCCc-ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCCcc
Q psy969 5 RKVAFKGSNF-RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWL 83 (106)
Q Consensus 5 ~iai~aGadF-KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~w~ 83 (106)
+.|.++|||| --.+ -+ ++.++...+.+ +.++-|=++||| |.+.+.+|.+ .|++
T Consensus 192 ~~A~~~gaDyI~ld~------~~-----~e~lk~~v~~~-------~~~ipi~AsGGI-~~~ni~~~a~-----~Gvd-- 245 (265)
T TIGR00078 192 EEAAEAGADIIMLDN------MK-----PEEIKEAVQLL-------KGRVLLEASGGI-TLDNLEEYAE-----TGVD-- 245 (265)
T ss_pred HHHHHcCCCEEEECC------CC-----HHHHHHHHHHh-------cCCCcEEEECCC-CHHHHHHHHH-----cCCC--
Confidence 4577889999 5422 33 55555555443 344789999999 6999999999 7996
Q ss_pred CCCceeEeccch
Q psy969 84 NKDLFRIGASSL 95 (106)
Q Consensus 84 ~~~~~RiGtSs~ 95 (106)
.|.+|..
T Consensus 246 -----~Isvgai 252 (265)
T TIGR00078 246 -----VISSGAL 252 (265)
T ss_pred -----EEEeCHH
Confidence 8877654
No 105
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=86.79 E-value=4.2 Score=33.58 Aligned_cols=80 Identities=14% Similarity=0.118 Sum_probs=54.5
Q ss_pred hhhHHHhhCCCc-cc--CC-CCC------C----CCCCCCCCCch-HHHHHHHHHHHHhhhcCC--ceeEeecC------
Q psy969 3 RPRKVAFKGSNF-RT--LH-GRG------P----DSTSYGNVCNT-CGIIMCSAIKHFHKLSGK--KIGLKPAG------ 59 (106)
Q Consensus 3 ~~~iai~aGadF-KT--ST-G~~------~----~gat~~~~~~~-~v~lm~~~i~~~~~~~~~--~vgiKaaG------ 59 (106)
+++.|.++|.|. -= .. ||- | ..-.||.. +| ..+++++.+++.++.+++ .|++|.+.
T Consensus 155 AA~ra~~AGfDgVEih~ah~GyLl~qFLSp~~N~RtDeyGGs-lenR~rf~~eii~~vr~~~g~~f~v~vri~~~~~~~~ 233 (382)
T cd02931 155 SAVIAKEAGFDGVEIHAVHEGYLLDQFTISLFNKRTDKYGGS-LENRLRFAIEIVEEIKARCGEDFPVSLRYSVKSYIKD 233 (382)
T ss_pred HHHHHHHcCCCEEEEeccccChHHHHhcCCccCCCCCcCCCC-HHHHhHHHHHHHHHHHHhcCCCceEEEEEechhhccc
Confidence 567888999999 32 35 862 1 11112221 44 588888888888888875 69999883
Q ss_pred -------------CCCCHHHHHHHHHHHHhhCCCCccC
Q psy969 60 -------------GISTFEDSVRWIYLVLIMLGPDWLN 84 (106)
Q Consensus 60 -------------GIrt~~~a~~~i~l~~~~lGa~w~~ 84 (106)
|--|++++++++++.++ +|.||++
T Consensus 234 ~~~~~~~~~~~~~~g~~~e~~~~~~~~l~~-~gvD~l~ 270 (382)
T cd02931 234 LRQGALPGEEFQEKGRDLEEGLKAAKILEE-AGYDALD 270 (382)
T ss_pred cccccccccccccCCCCHHHHHHHHHHHHH-hCCCEEE
Confidence 12478999888887655 4888873
No 106
>PRK08227 autoinducer 2 aldolase; Validated
Probab=86.52 E-value=2.9 Score=33.58 Aligned_cols=57 Identities=19% Similarity=0.150 Sum_probs=37.2
Q ss_pred chhhHHHhhCCCc-ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCC-CHHHHHHHHHHHHhhCC
Q psy969 2 GRPRKVAFKGSNF-RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGIS-TFEDSVRWIYLVLIMLG 79 (106)
Q Consensus 2 ~~~~iai~aGadF-KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIr-t~~~a~~~i~l~~~~lG 79 (106)
.++|++.+.|||| ||.= | - +-+.+.++ ..++-|=.+||=+ +.++.+++++-+.+ .|
T Consensus 162 ~aaRiaaELGADiVK~~y-------~-----~---~~f~~vv~------a~~vPVviaGG~k~~~~~~L~~v~~ai~-aG 219 (264)
T PRK08227 162 LATRIAAEMGAQIIKTYY-------V-----E---EGFERITA------GCPVPIVIAGGKKLPERDALEMCYQAID-EG 219 (264)
T ss_pred HHHHHHHHHcCCEEecCC-------C-----H---HHHHHHHH------cCCCcEEEeCCCCCCHHHHHHHHHHHHH-cC
Confidence 3789999999999 9752 1 1 23344443 2456777999998 44556666665544 56
Q ss_pred C
Q psy969 80 P 80 (106)
Q Consensus 80 a 80 (106)
+
T Consensus 220 a 220 (264)
T PRK08227 220 A 220 (264)
T ss_pred C
Confidence 5
No 107
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=86.37 E-value=3.3 Score=30.77 Aligned_cols=24 Identities=33% Similarity=0.400 Sum_probs=20.2
Q ss_pred eeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969 53 IGLKPAGGISTFEDSVRWIYLVLIMLGPD 81 (106)
Q Consensus 53 vgiKaaGGIrt~~~a~~~i~l~~~~lGa~ 81 (106)
+-|=++|||++.+++.+++. .|++
T Consensus 157 ~Pvi~~GGI~~~~~v~~~l~-----~Gad 180 (236)
T cd04730 157 IPVIAAGGIADGRGIAAALA-----LGAD 180 (236)
T ss_pred CCEEEECCCCCHHHHHHHHH-----cCCc
Confidence 44557999999999999998 6885
No 108
>PRK06852 aldolase; Validated
Probab=86.37 E-value=3.6 Score=33.78 Aligned_cols=65 Identities=20% Similarity=0.285 Sum_probs=39.9
Q ss_pred chhhHHHhhCCCc-ccC-CCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCC-HHHHHHHHHHHHhhC
Q psy969 2 GRPRKVAFKGSNF-RTL-HGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGIST-FEDSVRWIYLVLIML 78 (106)
Q Consensus 2 ~~~~iai~aGadF-KTS-TG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt-~~~a~~~i~l~~~~l 78 (106)
.++|++.+.|||| ||. |+- .+. .+.+.+.+++.. -+++.|=.|||=++ .++.+++++-+.+..
T Consensus 192 ~aaRiaaELGADIVKv~y~~~--~~~-------g~~e~f~~vv~~-----~g~vpVviaGG~k~~~~e~L~~v~~ai~~a 257 (304)
T PRK06852 192 GAAGVAACLGADFVKVNYPKK--EGA-------NPAELFKEAVLA-----AGRTKVVCAGGSSTDPEEFLKQLYEQIHIS 257 (304)
T ss_pred HHHHHHHHHcCCEEEecCCCc--CCC-------CCHHHHHHHHHh-----CCCCcEEEeCCCCCCHHHHHHHHHHHHHHc
Confidence 3689999999999 985 221 111 123344444431 24688889999985 455666666544446
Q ss_pred CC
Q psy969 79 GP 80 (106)
Q Consensus 79 Ga 80 (106)
|+
T Consensus 258 Ga 259 (304)
T PRK06852 258 GA 259 (304)
T ss_pred CC
Confidence 76
No 109
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=86.11 E-value=4.2 Score=32.77 Aligned_cols=57 Identities=18% Similarity=0.169 Sum_probs=39.8
Q ss_pred hhHHHhhCCCc-cc-----CCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhh
Q psy969 4 PRKVAFKGSNF-RT-----LHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIM 77 (106)
Q Consensus 4 ~~iai~aGadF-KT-----STG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~ 77 (106)
++...++|+++ -+ .||. +-.+ ++-++.+++. .++-|=+-|||.|.+||.+.++
T Consensus 137 ar~l~~~G~~~vmPlg~pIGsg~--Gi~~-----~~~I~~I~e~---------~~vpVI~egGI~tpeda~~Ame----- 195 (248)
T cd04728 137 AKRLEDAGCAAVMPLGSPIGSGQ--GLLN-----PYNLRIIIER---------ADVPVIVDAGIGTPSDAAQAME----- 195 (248)
T ss_pred HHHHHHcCCCEeCCCCcCCCCCC--CCCC-----HHHHHHHHHh---------CCCcEEEeCCCCCHHHHHHHHH-----
Confidence 45667789999 54 2332 1223 5566655543 3466778899999999999999
Q ss_pred CCCC
Q psy969 78 LGPD 81 (106)
Q Consensus 78 lGa~ 81 (106)
+|++
T Consensus 196 lGAd 199 (248)
T cd04728 196 LGAD 199 (248)
T ss_pred cCCC
Confidence 7996
No 110
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=86.00 E-value=1.2 Score=36.09 Aligned_cols=46 Identities=22% Similarity=0.295 Sum_probs=31.9
Q ss_pred chHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCCccC
Q psy969 32 NTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLN 84 (106)
Q Consensus 32 ~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~w~~ 84 (106)
.+.=..|.+.+++..+. --+-+=+.|||||.+++.+++. +|+|.++
T Consensus 56 ~~gr~~~~~vv~r~A~~--vfiPltVGGGI~s~eD~~~ll~-----aGADKVS 101 (256)
T COG0107 56 SEGRETMLDVVERVAEQ--VFIPLTVGGGIRSVEDARKLLR-----AGADKVS 101 (256)
T ss_pred cccchhHHHHHHHHHhh--ceeeeEecCCcCCHHHHHHHHH-----cCCCeee
Confidence 33344555555544222 2467788999999999999999 7998543
No 111
>PRK07695 transcriptional regulator TenI; Provisional
Probab=85.95 E-value=5.1 Score=29.61 Aligned_cols=63 Identities=16% Similarity=0.085 Sum_probs=36.7
Q ss_pred hHHHhhCCCc-ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969 5 RKVAFKGSNF-RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD 81 (106)
Q Consensus 5 ~iai~aGadF-KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~ 81 (106)
+.+.+.|+|| --+.-|.+ ....+.+ +.....+.+..+ . -++-|=+.||| +.+++.++++ +|++
T Consensus 109 ~~a~~~Gadyi~~g~v~~t-~~k~~~~-~~g~~~l~~~~~----~--~~ipvia~GGI-~~~~~~~~~~-----~Ga~ 172 (201)
T PRK07695 109 IQAEKNGADYVVYGHVFPT-DCKKGVP-ARGLEELSDIAR----A--LSIPVIAIGGI-TPENTRDVLA-----AGVS 172 (201)
T ss_pred HHHHHcCCCEEEECCCCCC-CCCCCCC-CCCHHHHHHHHH----h--CCCCEEEEcCC-CHHHHHHHHH-----cCCC
Confidence 4466789999 65543321 1110000 223344443322 1 24667799999 9999999998 7985
No 112
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=85.79 E-value=3.3 Score=33.44 Aligned_cols=61 Identities=15% Similarity=0.030 Sum_probs=36.2
Q ss_pred hhHHHhhCCCcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHH
Q psy969 4 PRKVAFKGSNFRTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYL 73 (106)
Q Consensus 4 ~~iai~aGadFKTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l 73 (106)
++.+.++|+|+-|-+|....+--++..-.+.++.+++. -++-|=++|||+|.+++.++++.
T Consensus 155 a~~le~~G~d~i~vh~rt~~~~~~G~a~~~~i~~ik~~---------~~iPVI~nGgI~s~~da~~~l~~ 215 (321)
T PRK10415 155 AQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRAVKQK---------VSIPVIANGDITDPLKARAVLDY 215 (321)
T ss_pred HHHHHHhCCCEEEEecCccccccCCCcChHHHHHHHHh---------cCCcEEEeCCCCCHHHHHHHHhc
Confidence 34567789998555553321111111113333333322 24678889999999999999974
No 113
>PRK04302 triosephosphate isomerase; Provisional
Probab=85.77 E-value=2.6 Score=31.92 Aligned_cols=50 Identities=22% Similarity=0.164 Sum_probs=36.4
Q ss_pred chHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCCccCCCceeEeccch
Q psy969 32 NTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGASSL 95 (106)
Q Consensus 32 ~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~w~~~~~~RiGtSs~ 95 (106)
++.+..+.+.++++ ..++-|=+-|||++.+++..+.+ .|++ .+-+|+..+
T Consensus 157 ~~~i~~~~~~ir~~----~~~~pvi~GggI~~~e~~~~~~~-----~gad-----GvlVGsa~l 206 (223)
T PRK04302 157 PEVVEDAVEAVKKV----NPDVKVLCGAGISTGEDVKAALE-----LGAD-----GVLLASGVV 206 (223)
T ss_pred HHHHHHHHHHHHhc----cCCCEEEEECCCCCHHHHHHHHc-----CCCC-----EEEEehHHh
Confidence 77777777777643 23456666799999999999998 6774 566777654
No 114
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=85.72 E-value=2.8 Score=34.37 Aligned_cols=20 Identities=40% Similarity=0.632 Sum_probs=18.5
Q ss_pred ecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969 57 PAGGISTFEDSVRWIYLVLIMLGPD 81 (106)
Q Consensus 57 aaGGIrt~~~a~~~i~l~~~~lGa~ 81 (106)
+-|||.|.+++..+++ +|++
T Consensus 201 AeGGI~Tpena~~v~e-----~GAd 220 (283)
T cd04727 201 AAGGVATPADAALMMQ-----LGAD 220 (283)
T ss_pred EeCCCCCHHHHHHHHH-----cCCC
Confidence 7899999999999999 7985
No 115
>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases. FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.
Probab=85.61 E-value=2.9 Score=31.99 Aligned_cols=66 Identities=15% Similarity=0.078 Sum_probs=41.4
Q ss_pred hhHHHhhCCCc-ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCCc
Q psy969 4 PRKVAFKGSNF-RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDW 82 (106)
Q Consensus 4 ~~iai~aGadF-KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~w 82 (106)
+..|+++||+| ---.|.. ...+..-.+.++-|.+.++ ..+-+..|-++ |+|+.+|+.+.+. +|++.
T Consensus 115 a~~Aa~AGA~yvsP~vgR~---~~~g~dg~~~i~~i~~~~~----~~~~~tkil~A-s~r~~~ei~~a~~-----~Gad~ 181 (211)
T cd00956 115 ALLAAKAGATYVSPFVGRI---DDLGGDGMELIREIRTIFD----NYGFDTKILAA-SIRNPQHVIEAAL-----AGADA 181 (211)
T ss_pred HHHHHHcCCCEEEEecChH---hhcCCCHHHHHHHHHHHHH----HcCCCceEEec-ccCCHHHHHHHHH-----cCCCE
Confidence 45789999999 4444432 1111111334444444433 33557788876 5999999999888 79974
No 116
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=85.55 E-value=2.7 Score=32.24 Aligned_cols=25 Identities=40% Similarity=0.578 Sum_probs=21.8
Q ss_pred ceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969 52 KIGLKPAGGISTFEDSVRWIYLVLIMLGPD 81 (106)
Q Consensus 52 ~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~ 81 (106)
.+-|=+.|||||.+++.++++ .|++
T Consensus 74 ~ipv~~~GGi~s~~~~~~~l~-----~Ga~ 98 (253)
T PRK02083 74 FIPLTVGGGIRSVEDARRLLR-----AGAD 98 (253)
T ss_pred CCCEEeeCCCCCHHHHHHHHH-----cCCC
Confidence 366788999999999999999 6875
No 117
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=85.53 E-value=1.9 Score=33.68 Aligned_cols=32 Identities=16% Similarity=0.199 Sum_probs=25.0
Q ss_pred eeEeecCCCCCHHHHHHHHHHHHhhCCCCccCCCceeEeccc
Q psy969 53 IGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGASS 94 (106)
Q Consensus 53 vgiKaaGGIrt~~~a~~~i~l~~~~lGa~w~~~~~~RiGtSs 94 (106)
.-|=.-|||||.+++..+++ +|++ ..-|||..
T Consensus 74 ~~v~vGGGIrs~e~~~~~l~-----~Ga~-----rvvigT~a 105 (241)
T PRK14114 74 EHIQIGGGIRSLDYAEKLRK-----LGYR-----RQIVSSKV 105 (241)
T ss_pred CcEEEecCCCCHHHHHHHHH-----CCCC-----EEEECchh
Confidence 35677899999999999999 7985 22367754
No 118
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=85.46 E-value=4 Score=33.11 Aligned_cols=56 Identities=14% Similarity=0.086 Sum_probs=41.8
Q ss_pred hHHHhhCCCc-ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969 5 RKVAFKGSNF-RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD 81 (106)
Q Consensus 5 ~iai~aGadF-KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~ 81 (106)
+.++++|||. .= .+-+ +++++...+.+++ ..+++.+=+|||| |++.+.+|.. .|.|
T Consensus 203 ~ea~~agaDiI~L------Dn~~-----~e~l~~av~~~~~----~~~~~~leaSGGI-~~~ni~~yA~-----tGvD 259 (284)
T PRK06096 203 IAALRAQPDVLQL------DKFS-----PQQATEIAQIAPS----LAPHCTLSLAGGI-NLNTLKNYAD-----CGIR 259 (284)
T ss_pred HHHHHcCCCEEEE------CCCC-----HHHHHHHHHHhhc----cCCCeEEEEECCC-CHHHHHHHHh-----cCCC
Confidence 4577889998 52 3455 7777777665532 2468899999999 5889999999 7997
No 119
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=85.26 E-value=2.6 Score=35.22 Aligned_cols=65 Identities=25% Similarity=0.355 Sum_probs=40.9
Q ss_pred hhhHHHhhCCCc---ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCC
Q psy969 3 RPRKVAFKGSNF---RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLG 79 (106)
Q Consensus 3 ~~~iai~aGadF---KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lG 79 (106)
+.+..+++|+|+ -+++|.. +.+.-+.+.|++. . +++-|= +|.|-|.+.|+.|++ +|
T Consensus 112 r~~~L~~agvD~ivID~a~g~s-----------~~~~~~ik~ik~~---~-~~~~vi-aGNV~T~e~a~~L~~-----aG 170 (352)
T PF00478_consen 112 RAEALVEAGVDVIVIDSAHGHS-----------EHVIDMIKKIKKK---F-PDVPVI-AGNVVTYEGAKDLID-----AG 170 (352)
T ss_dssp HHHHHHHTT-SEEEEE-SSTTS-----------HHHHHHHHHHHHH---S-TTSEEE-EEEE-SHHHHHHHHH-----TT
T ss_pred HHHHHHHcCCCEEEccccCccH-----------HHHHHHHHHHHHh---C-CCceEE-ecccCCHHHHHHHHH-----cC
Confidence 456678899999 7788753 2333333344332 3 366665 599999999999999 79
Q ss_pred CCccCCCceeEecc
Q psy969 80 PDWLNKDLFRIGAS 93 (106)
Q Consensus 80 a~w~~~~~~RiGtS 93 (106)
+| ..|+|..
T Consensus 171 ad-----~vkVGiG 179 (352)
T PF00478_consen 171 AD-----AVKVGIG 179 (352)
T ss_dssp -S-----EEEESSS
T ss_pred CC-----EEEEecc
Confidence 85 5677643
No 120
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=85.05 E-value=3.3 Score=32.88 Aligned_cols=60 Identities=20% Similarity=0.222 Sum_probs=43.1
Q ss_pred hHHHhhCCCc-ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCCcc
Q psy969 5 RKVAFKGSNF-RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWL 83 (106)
Q Consensus 5 ~iai~aGadF-KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~w~ 83 (106)
+.|.++|||| --.. -+ ++.++-..+.+ +.++-|=++||| |.+.+.+|.+ .|++
T Consensus 196 ~~A~~~gaDyI~ld~------~~-----~e~l~~~~~~~-------~~~ipi~AiGGI-~~~ni~~~a~-----~Gvd-- 249 (268)
T cd01572 196 KEALEAGADIIMLDN------MS-----PEELREAVALL-------KGRVLLEASGGI-TLENIRAYAE-----TGVD-- 249 (268)
T ss_pred HHHHHcCCCEEEECC------cC-----HHHHHHHHHHc-------CCCCcEEEECCC-CHHHHHHHHH-----cCCC--
Confidence 4567889999 6432 24 66666555443 336889999999 6999999999 7996
Q ss_pred CCCceeEeccch
Q psy969 84 NKDLFRIGASSL 95 (106)
Q Consensus 84 ~~~~~RiGtSs~ 95 (106)
.|.++++
T Consensus 250 -----~Iav~sl 256 (268)
T cd01572 250 -----YISVGAL 256 (268)
T ss_pred -----EEEEEee
Confidence 7776654
No 121
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=84.96 E-value=2.6 Score=32.93 Aligned_cols=24 Identities=29% Similarity=0.306 Sum_probs=20.4
Q ss_pred eeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969 53 IGLKPAGGISTFEDSVRWIYLVLIMLGPD 81 (106)
Q Consensus 53 vgiKaaGGIrt~~~a~~~i~l~~~~lGa~ 81 (106)
+-|=.-|||||.+||.++++ +|++
T Consensus 176 ~pl~vGGGIrs~e~a~~l~~-----aGAD 199 (219)
T cd02812 176 TPLIVGGGIRSGEQAKEMAE-----AGAD 199 (219)
T ss_pred CCEEEeCCCCCHHHHHHHHH-----cCCC
Confidence 44556899999999999999 7986
No 122
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=84.74 E-value=4.8 Score=32.98 Aligned_cols=60 Identities=17% Similarity=0.156 Sum_probs=41.7
Q ss_pred hHHHhhCCCc-ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCCcc
Q psy969 5 RKVAFKGSNF-RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWL 83 (106)
Q Consensus 5 ~iai~aGadF-KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~w~ 83 (106)
+.++++|+|. .= .+-+ +++++...+.+ ++++-|=+|||| |++.+.+|.+ .|+|
T Consensus 222 ~ea~~~gaDiI~L------Dn~s-----~e~~~~av~~~-------~~~~~ieaSGGI-~~~ni~~yA~-----tGVD-- 275 (296)
T PRK09016 222 DQALKAGADIIML------DNFT-----TEQMREAVKRT-------NGRALLEVSGNV-TLETLREFAE-----TGVD-- 275 (296)
T ss_pred HHHHHcCCCEEEe------CCCC-----hHHHHHHHHhh-------cCCeEEEEECCC-CHHHHHHHHh-----cCCC--
Confidence 4567788887 52 2234 66555554433 468999999999 5788999988 7997
Q ss_pred CCCceeEeccch
Q psy969 84 NKDLFRIGASSL 95 (106)
Q Consensus 84 ~~~~~RiGtSs~ 95 (106)
.|.+|++
T Consensus 276 -----~Is~gal 282 (296)
T PRK09016 276 -----FISVGAL 282 (296)
T ss_pred -----EEEeCcc
Confidence 7766653
No 123
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=84.64 E-value=4.4 Score=32.68 Aligned_cols=57 Identities=21% Similarity=0.181 Sum_probs=41.8
Q ss_pred hhHHHhhCCCc-ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969 4 PRKVAFKGSNF-RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD 81 (106)
Q Consensus 4 ~~iai~aGadF-KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~ 81 (106)
.+.++++|+|. . -. +-+ +++++...+.+++ ..+++.|=+|||| +.+.+.+|.. .|+|
T Consensus 201 a~ea~~~GaDiI~-lD-----n~~-----~e~l~~~v~~l~~----~~~~~~leasGGI-~~~ni~~ya~-----~GvD 258 (277)
T TIGR01334 201 ALTVLQASPDILQ-LD-----KFT-----PQQLHHLHERLKF----FDHIPTLAAAGGI-NPENIADYIE-----AGID 258 (277)
T ss_pred HHHHHHcCcCEEE-EC-----CCC-----HHHHHHHHHHHhc----cCCCEEEEEECCC-CHHHHHHHHh-----cCCC
Confidence 34677889998 4 22 345 7777766666542 2578899999999 5888999998 7997
No 124
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=84.58 E-value=3.2 Score=32.08 Aligned_cols=33 Identities=30% Similarity=0.451 Sum_probs=25.6
Q ss_pred ceeEeecCCCCCHHHHHHHHHHHHhhCCCCccCCCceeEeccc
Q psy969 52 KIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGASS 94 (106)
Q Consensus 52 ~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~w~~~~~~RiGtSs 94 (106)
.+-|=+.||||+.+++.+++. +|++ ..-+|++.
T Consensus 74 ~~pv~~~GGi~s~~d~~~~~~-----~Ga~-----~vivgt~~ 106 (254)
T TIGR00735 74 FIPLTVGGGIKSIEDVDKLLR-----AGAD-----KVSINTAA 106 (254)
T ss_pred CCCEEEECCCCCHHHHHHHHH-----cCCC-----EEEEChhH
Confidence 366788999999999999999 6885 23456654
No 125
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=84.56 E-value=3.6 Score=34.57 Aligned_cols=70 Identities=13% Similarity=0.059 Sum_probs=38.6
Q ss_pred chhhHHHhhCCCc-ccC-CC----CCCC-----C-CCCC-CCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCC-HHHH
Q psy969 2 GRPRKVAFKGSNF-RTL-HG----RGPD-----S-TSYG-NVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGIST-FEDS 67 (106)
Q Consensus 2 ~~~~iai~aGadF-KTS-TG----~~~~-----g-at~~-~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt-~~~a 67 (106)
.+++++.+.|||+ ||. || |... - .-|+ ..-....+.++.+++.- .-+++.|=.|||=++ .++.
T Consensus 221 ~AaRiaaELGADIVKv~yp~~~~~f~~v~~~~~~~~~~~~~~~~~~~~~~~~~V~ac---~ag~vpVviAGG~k~~~~e~ 297 (348)
T PRK09250 221 QANHLAATIGADIIKQKLPTNNGGYKAINFGKTDDRVYSKLTSDHPIDLVRYQVANC---YMGRRGLINSGGASKGEDDL 297 (348)
T ss_pred HHHHHHHHHcCCEEEecCCCChhhHHHhhcccccccccccccccchHHHHHHHHHhh---ccCCceEEEeCCCCCCHHHH
Confidence 3789999999999 986 32 1110 0 0000 00012345555554321 134789999999994 4555
Q ss_pred HHHHHHH
Q psy969 68 VRWIYLV 74 (106)
Q Consensus 68 ~~~i~l~ 74 (106)
++++.-+
T Consensus 298 L~~v~~a 304 (348)
T PRK09250 298 LDAVRTA 304 (348)
T ss_pred HHHHHHH
Confidence 5555543
No 126
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=84.52 E-value=3.2 Score=33.36 Aligned_cols=63 Identities=17% Similarity=0.200 Sum_probs=40.8
Q ss_pred hHHHhhCCCcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969 5 RKVAFKGSNFRTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD 81 (106)
Q Consensus 5 ~iai~aGadFKTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~ 81 (106)
+.+.++|+|+-.-+|+...|-+ + ...+..++.+..+. . ++-|=++|||.+.+++.+++. +|++
T Consensus 123 ~~a~~~GaD~Ivv~g~eagGh~-g--~~~~~~ll~~v~~~----~--~iPviaaGGI~~~~~~~~al~-----~GA~ 185 (307)
T TIGR03151 123 KRMEKAGADAVIAEGMESGGHI-G--ELTTMALVPQVVDA----V--SIPVIAAGGIADGRGMAAAFA-----LGAE 185 (307)
T ss_pred HHHHHcCCCEEEEECcccCCCC-C--CCcHHHHHHHHHHH----h--CCCEEEECCCCCHHHHHHHHH-----cCCC
Confidence 5678899999444555433322 0 02244554443321 2 366889999999999999998 6986
No 127
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=84.49 E-value=2.6 Score=32.29 Aligned_cols=33 Identities=36% Similarity=0.599 Sum_probs=24.4
Q ss_pred eeEeecCCCCCHHHHHHHHHHHHhhCCCCccCCCceeEeccch
Q psy969 53 IGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGASSL 95 (106)
Q Consensus 53 vgiKaaGGIrt~~~a~~~i~l~~~~lGa~w~~~~~~RiGtSs~ 95 (106)
+-|=+-||||+.+++.++++ +|++ ..-|||...
T Consensus 74 ~~i~vgGGIrs~ed~~~ll~-----~Ga~-----~Vvigt~~~ 106 (229)
T PF00977_consen 74 IPIQVGGGIRSIEDAERLLD-----AGAD-----RVVIGTEAL 106 (229)
T ss_dssp SEEEEESSE-SHHHHHHHHH-----TT-S-----EEEESHHHH
T ss_pred ccEEEeCccCcHHHHHHHHH-----hCCC-----EEEeChHHh
Confidence 77778899999999999999 7985 234666544
No 128
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=84.39 E-value=4.2 Score=32.70 Aligned_cols=60 Identities=20% Similarity=0.161 Sum_probs=42.5
Q ss_pred hHHHhhCCCc-ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCCcc
Q psy969 5 RKVAFKGSNF-RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWL 83 (106)
Q Consensus 5 ~iai~aGadF-KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~w~ 83 (106)
+.+.+.|+|| --. +-+ ++.++..++.+ +.++-|=|+||| |.+.+.+|.+ .|++
T Consensus 202 ~~A~~~gaDyI~lD------~~~-----~e~l~~~~~~~-------~~~i~i~AiGGI-t~~ni~~~a~-----~Gvd-- 255 (277)
T PRK08072 202 REAVAAGADIIMFD------NRT-----PDEIREFVKLV-------PSAIVTEASGGI-TLENLPAYGG-----TGVD-- 255 (277)
T ss_pred HHHHHcCCCEEEEC------CCC-----HHHHHHHHHhc-------CCCceEEEECCC-CHHHHHHHHH-----cCCC--
Confidence 3567889999 441 244 77666665543 345667799999 8999999999 7996
Q ss_pred CCCceeEeccch
Q psy969 84 NKDLFRIGASSL 95 (106)
Q Consensus 84 ~~~~~RiGtSs~ 95 (106)
.|-+|++
T Consensus 256 -----~IAvg~l 262 (277)
T PRK08072 256 -----YISLGFL 262 (277)
T ss_pred -----EEEEChh
Confidence 6655553
No 129
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=84.36 E-value=6.2 Score=32.07 Aligned_cols=80 Identities=16% Similarity=0.268 Sum_probs=51.5
Q ss_pred hhhHHHhhCCCc---ccCCCC------CCCC----CCCCCCCch-HHHHHHHHHHHHhhhcCC--ceeEeecCCC-----
Q psy969 3 RPRKVAFKGSNF---RTLHGR------GPDS----TSYGNVCNT-CGIIMCSAIKHFHKLSGK--KIGLKPAGGI----- 61 (106)
Q Consensus 3 ~~~iai~aGadF---KTSTG~------~~~g----at~~~~~~~-~v~lm~~~i~~~~~~~~~--~vgiKaaGGI----- 61 (106)
+++.|.++|.|+ --..|| +|.- -.||.. ++ ..+++++.++..++.++. .++||.+.--
T Consensus 146 AA~ra~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGs-lenR~r~~~eiv~~ir~~vg~~~~v~iRl~~~~~~~~G 224 (343)
T cd04734 146 AARRCQAGGLDGVELQAAHGHLIDQFLSPLTNRRTDEYGGS-LENRMRFLLEVLAAVRAAVGPDFIVGIRISGDEDTEGG 224 (343)
T ss_pred HHHHHHHcCCCEEEEccccchHHHHhhCCCcCCCCCcCCCC-HHHHhHHHHHHHHHHHHHcCCCCeEEEEeehhhccCCC
Confidence 567888999998 344465 3311 112221 44 478888888888887765 4788886411
Q ss_pred CCHHHHHHHHHHHHhhCC-CCccC
Q psy969 62 STFEDSVRWIYLVLIMLG-PDWLN 84 (106)
Q Consensus 62 rt~~~a~~~i~l~~~~lG-a~w~~ 84 (106)
-|.++.++++++.++ +| .+|++
T Consensus 225 ~~~~e~~~~~~~l~~-~G~vd~i~ 247 (343)
T cd04734 225 LSPDEALEIAARLAA-EGLIDYVN 247 (343)
T ss_pred CCHHHHHHHHHHHHh-cCCCCEEE
Confidence 367888888776655 56 78764
No 130
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=84.21 E-value=3.9 Score=30.47 Aligned_cols=32 Identities=25% Similarity=0.390 Sum_probs=24.2
Q ss_pred eeEeecCCCCCHHHHHHHHHHHHhhCCCCccCCCceeEeccc
Q psy969 53 IGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGASS 94 (106)
Q Consensus 53 vgiKaaGGIrt~~~a~~~i~l~~~~lGa~w~~~~~~RiGtSs 94 (106)
+-|=+.||||+.+|+.++++ +|++ ..-+|++.
T Consensus 75 ~pv~~~GGI~~~ed~~~~~~-----~Ga~-----~vilg~~~ 106 (233)
T PRK00748 75 IPVQVGGGIRSLETVEALLD-----AGVS-----RVIIGTAA 106 (233)
T ss_pred CCEEEcCCcCCHHHHHHHHH-----cCCC-----EEEECchH
Confidence 44556899999999999999 6885 23456654
No 131
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=84.10 E-value=5.4 Score=32.47 Aligned_cols=81 Identities=11% Similarity=0.087 Sum_probs=52.3
Q ss_pred hhhHHHhhCCCc-cc--CCCCC------C----CCCCCCCCCch-HHHHHHHHHHHHhhhcCC-ceeEeecCC-----C-
Q psy969 3 RPRKVAFKGSNF-RT--LHGRG------P----DSTSYGNVCNT-CGIIMCSAIKHFHKLSGK-KIGLKPAGG-----I- 61 (106)
Q Consensus 3 ~~~iai~aGadF-KT--STG~~------~----~gat~~~~~~~-~v~lm~~~i~~~~~~~~~-~vgiKaaGG-----I- 61 (106)
+++.|.++|.|. -= ..||- | ..-.||-. ++ ..+++++.+++.++.++. .|+||.++. +
T Consensus 157 aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~R~D~yGGs-lenR~rf~~eii~air~~vg~d~v~vRis~~~~~~~~~ 235 (338)
T cd02933 157 AARNAIEAGFDGVEIHGANGYLIDQFLRDGSNKRTDEYGGS-IENRARFLLEVVDAVAEAIGADRVGIRLSPFGTFNDMG 235 (338)
T ss_pred HHHHHHHcCCCEEEEccccchhHHHhcCCccCCCCCcCCCc-HHHhhhHHHHHHHHHHHHhCCCceEEEECccccCCCCC
Confidence 567888999999 43 45532 1 11112211 44 578888888888777765 799999842 1
Q ss_pred --CCHHHHHHHHHHHHhhCCCCccCC
Q psy969 62 --STFEDSVRWIYLVLIMLGPDWLNK 85 (106)
Q Consensus 62 --rt~~~a~~~i~l~~~~lGa~w~~~ 85 (106)
.+.++.+++++..++ .|.|+++-
T Consensus 236 ~~~~~ee~~~~~~~l~~-~g~d~i~v 260 (338)
T cd02933 236 DSDPEATFSYLAKELNK-RGLAYLHL 260 (338)
T ss_pred CCCCHHHHHHHHHHHHH-cCCcEEEE
Confidence 377888888776544 37777643
No 132
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=84.09 E-value=7.1 Score=28.31 Aligned_cols=61 Identities=16% Similarity=0.181 Sum_probs=36.3
Q ss_pred HHHhhCCCc-ccCCCCCC---CCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969 6 KVAFKGSNF-RTLHGRGP---DSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD 81 (106)
Q Consensus 6 iai~aGadF-KTSTG~~~---~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~ 81 (106)
.+.+.|+|| +.++=|.+ ++.+ . +.....+.+..+. . +++-|=+.||| +.+++.++++ +|++
T Consensus 111 ~a~~~g~dyi~~~~v~~t~~k~~~~--~--~~g~~~l~~~~~~----~-~~~pv~a~GGI-~~~~~~~~~~-----~G~~ 175 (196)
T TIGR00693 111 EAEAEGADYIGFGPIFPTPTKKDPA--P--PAGVELLREIAAT----S-IDIPIVAIGGI-TLENAAEVLA-----AGAD 175 (196)
T ss_pred HHhHcCCCEEEECCccCCCCCCCCC--C--CCCHHHHHHHHHh----c-CCCCEEEECCc-CHHHHHHHHH-----cCCC
Confidence 466789999 86543321 1111 0 1134444433321 1 24678899999 5899999988 6885
No 133
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=84.06 E-value=5.4 Score=30.02 Aligned_cols=25 Identities=24% Similarity=0.387 Sum_probs=21.6
Q ss_pred ceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969 52 KIGLKPAGGISTFEDSVRWIYLVLIMLGPD 81 (106)
Q Consensus 52 ~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~ 81 (106)
.+-|=++|||+|++++.++.+ +|++
T Consensus 193 ~iPvia~GGI~~~~di~~~~~-----~Ga~ 217 (241)
T PRK13585 193 DIPVIASGGVTTLDDLRALKE-----AGAA 217 (241)
T ss_pred CCCEEEeCCCCCHHHHHHHHH-----cCCC
Confidence 467889999999999999877 6885
No 134
>PRK11750 gltB glutamate synthase subunit alpha; Provisional
Probab=83.89 E-value=3.2 Score=40.66 Aligned_cols=69 Identities=25% Similarity=0.177 Sum_probs=41.3
Q ss_pred HHhhCCCcccCCCC-CCCCCCC-------CCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhC
Q psy969 7 VAFKGSNFRTLHGR-GPDSTSY-------GNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIML 78 (106)
Q Consensus 7 ai~aGadFKTSTG~-~~~gat~-------~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~l 78 (106)
+.++||||-|=.|. +..||+. |-|=...+....+++... ....+|-|=++||++|..|+...+. |
T Consensus 1016 vaka~aD~I~IdG~~GGTGAap~~~~~~~GlP~e~gL~~~~~~L~~~--glR~rv~l~a~Ggl~t~~Dv~kA~a-----L 1088 (1485)
T PRK11750 1016 VAKAYADLITISGYDGGTGASPLTSVKYAGSPWELGLAETHQALVAN--GLRHKIRLQVDGGLKTGLDVIKAAI-----L 1088 (1485)
T ss_pred hhhcCCCEEEEeCCCCCcccccHHHHhhCCccHHHHHHHHHHHHHhc--CCCcceEEEEcCCcCCHHHHHHHHH-----c
Confidence 46789999444443 3445551 111111122222222211 1356899999999999999999998 7
Q ss_pred CCCc
Q psy969 79 GPDW 82 (106)
Q Consensus 79 Ga~w 82 (106)
||||
T Consensus 1089 GAd~ 1092 (1485)
T PRK11750 1089 GAES 1092 (1485)
T ss_pred CCcc
Confidence 9973
No 135
>PRK00208 thiG thiazole synthase; Reviewed
Probab=83.85 E-value=7 Score=31.54 Aligned_cols=57 Identities=18% Similarity=0.154 Sum_probs=39.7
Q ss_pred hhHHHhhCCCc-cc-----CCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhh
Q psy969 4 PRKVAFKGSNF-RT-----LHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIM 77 (106)
Q Consensus 4 ~~iai~aGadF-KT-----STG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~ 77 (106)
++...++|+|+ -+ .||. +-.+ ++.++.+++. .++-|=+-|||.|.+||.+.++
T Consensus 137 ak~l~~~G~~~vmPlg~pIGsg~--gi~~-----~~~i~~i~e~---------~~vpVIveaGI~tpeda~~Ame----- 195 (250)
T PRK00208 137 AKRLEEAGCAAVMPLGAPIGSGL--GLLN-----PYNLRIIIEQ---------ADVPVIVDAGIGTPSDAAQAME----- 195 (250)
T ss_pred HHHHHHcCCCEeCCCCcCCCCCC--CCCC-----HHHHHHHHHh---------cCCeEEEeCCCCCHHHHHHHHH-----
Confidence 45567789999 54 3442 1234 5556655543 3466778899999999999999
Q ss_pred CCCC
Q psy969 78 LGPD 81 (106)
Q Consensus 78 lGa~ 81 (106)
+|++
T Consensus 196 lGAd 199 (250)
T PRK00208 196 LGAD 199 (250)
T ss_pred cCCC
Confidence 7996
No 136
>PLN02411 12-oxophytodienoate reductase
Probab=83.75 E-value=4.6 Score=33.64 Aligned_cols=76 Identities=9% Similarity=0.034 Sum_probs=51.6
Q ss_pred hhhHHHhhCCCc---ccCCCCC------C--------CCCCCCCCCch-HHHHHHHHHHHHhhhcCC-ceeEeecCC---
Q psy969 3 RPRKVAFKGSNF---RTLHGRG------P--------DSTSYGNVCNT-CGIIMCSAIKHFHKLSGK-KIGLKPAGG--- 60 (106)
Q Consensus 3 ~~~iai~aGadF---KTSTG~~------~--------~gat~~~~~~~-~v~lm~~~i~~~~~~~~~-~vgiKaaGG--- 60 (106)
+++.|.+||.|. .-.+||- | .|-+ +| -.++++|.|++.++.+++ .|+||.|+.
T Consensus 170 AA~rA~~AGFDGVEIH~AhGYLl~QFLSp~tN~RtDeYGGS-----lENR~RF~lEIi~aVr~~vg~d~vgvRiS~~~~~ 244 (391)
T PLN02411 170 AALNAIRAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGS-----IENRCRFLMQVVQAVVSAIGADRVGVRVSPAIDH 244 (391)
T ss_pred HHHHHHHcCCCEEEEccccchHHHHhCCCccCCCCCcCCCC-----HHHHhHHHHHHHHHHHHHcCCCeEEEEEcccccc
Confidence 567899999999 5677752 1 1334 45 388888888888888764 699999952
Q ss_pred -----CCCHHHHHHHHHHHHhh---C--CCCcc
Q psy969 61 -----ISTFEDSVRWIYLVLIM---L--GPDWL 83 (106)
Q Consensus 61 -----Irt~~~a~~~i~l~~~~---l--Ga~w~ 83 (106)
-.+.++.+.+.+..+.+ . |.+++
T Consensus 245 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~vd~i 277 (391)
T PLN02411 245 LDATDSDPLNLGLAVVERLNKLQLQNGSKLAYL 277 (391)
T ss_pred cCCCCCcchhhHHHHHHHHHHHHhhcCCCeEEE
Confidence 23456677777666553 3 36765
No 137
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=83.57 E-value=5.1 Score=29.61 Aligned_cols=79 Identities=13% Similarity=0.058 Sum_probs=47.8
Q ss_pred hhhHHHhhCCCc-ccCCCCCCC----CCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhh
Q psy969 3 RPRKVAFKGSNF-RTLHGRGPD----STSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIM 77 (106)
Q Consensus 3 ~~~iai~aGadF-KTSTG~~~~----gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~ 77 (106)
+++.+.++|+|. .=.-|- |. .-.||+.-..+.+++.+.++++++..+..+.+|...|....+++.++++..++
T Consensus 72 aa~~~~~aG~d~ieln~g~-p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~~~~v~vk~r~~~~~~~~~~~~~~~l~~- 149 (231)
T cd02801 72 AAKIVEELGADGIDLNMGC-PSPKVTKGGAGAALLKDPELVAEIVRAVREAVPIPVTVKIRLGWDDEEETLELAKALED- 149 (231)
T ss_pred HHHHHHhcCCCEEEEeCCC-CHHHHhCCCeeehhcCCHHHHHHHHHHHHHhcCCCEEEEEeeccCCchHHHHHHHHHHH-
Confidence 456677778888 544331 11 00111111345677777777776667778999988777554467676665544
Q ss_pred CCCCcc
Q psy969 78 LGPDWL 83 (106)
Q Consensus 78 lGa~w~ 83 (106)
+|.+++
T Consensus 150 ~Gvd~i 155 (231)
T cd02801 150 AGASAL 155 (231)
T ss_pred hCCCEE
Confidence 588876
No 138
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=83.55 E-value=5.8 Score=30.69 Aligned_cols=77 Identities=17% Similarity=0.101 Sum_probs=43.0
Q ss_pred hhHHHhhCCCc-ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCCc
Q psy969 4 PRKVAFKGSNF-RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDW 82 (106)
Q Consensus 4 ~~iai~aGadF-KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~w 82 (106)
++.+.++|+|+ --.-+ .|. ...+.....+-+.+.+.+++.++.++..+.+|.++++ +.++..++.+.++ -+|+++
T Consensus 117 a~~~~~~G~d~ielN~~-cP~-~~~~~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~~-~~~~~~~~a~~l~-~~Gad~ 192 (289)
T cd02810 117 ARKIERAGAKALELNLS-CPN-VGGGRQLGQDPEAVANLLKAVKAAVDIPLLVKLSPYF-DLEDIVELAKAAE-RAGADG 192 (289)
T ss_pred HHHHHHhCCCEEEEEcC-CCC-CCCCcccccCHHHHHHHHHHHHHccCCCEEEEeCCCC-CHHHHHHHHHHHH-HcCCCE
Confidence 56677889998 43332 221 1101111224455555555555556678999998875 4555555554432 279998
Q ss_pred cC
Q psy969 83 LN 84 (106)
Q Consensus 83 ~~ 84 (106)
++
T Consensus 193 i~ 194 (289)
T cd02810 193 LT 194 (289)
T ss_pred EE
Confidence 74
No 139
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=83.43 E-value=5.3 Score=28.99 Aligned_cols=58 Identities=16% Similarity=0.123 Sum_probs=36.1
Q ss_pred HHhhCCCc-ccCCCCCCCCCCCCCCC-chHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969 7 VAFKGSNF-RTLHGRGPDSTSYGNVC-NTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD 81 (106)
Q Consensus 7 ai~aGadF-KTSTG~~~~gat~~~~~-~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~ 81 (106)
+...|+|| +...+|.+... +.++ ++.++.+++. ..+-|=+.|||+ .+++.++++ .|++
T Consensus 122 ~~~~~~d~v~~~~~~~~~~~--~~~~~~~~i~~~~~~---------~~~~i~~~GGI~-~~~i~~~~~-----~Gad 181 (202)
T cd04726 122 LLKLGVDIVILHRGIDAQAA--GGWWPEDDLKKVKKL---------LGVKVAVAGGIT-PDTLPEFKK-----AGAD 181 (202)
T ss_pred HHHCCCCEEEEcCccccccc--CCCCCHHHHHHHHhh---------cCCCEEEECCcC-HHHHHHHHh-----cCCC
Confidence 55679999 88655532211 1111 2233333211 457788999996 999999999 7996
No 140
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=83.02 E-value=7.6 Score=27.32 Aligned_cols=60 Identities=13% Similarity=0.112 Sum_probs=35.9
Q ss_pred hHHHhhCCCc-ccCCCCCC---CCC-CCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCC
Q psy969 5 RKVAFKGSNF-RTLHGRGP---DST-SYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLG 79 (106)
Q Consensus 5 ~iai~aGadF-KTSTG~~~---~ga-t~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lG 79 (106)
+.+.+.|+|+ .-++-|-. .+. . +.....+.+..+ . ..+-|=+.|||. .+++.++++ +|
T Consensus 109 ~~~~~~g~d~i~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~-~-----~~~pv~a~GGi~-~~~i~~~~~-----~G 171 (196)
T cd00564 109 LRAEELGADYVGFGPVFPTPTKPGAGP-----PLGLELLREIAE-L-----VEIPVVAIGGIT-PENAAEVLA-----AG 171 (196)
T ss_pred HHHhhcCCCEEEECCccCCCCCCCCCC-----CCCHHHHHHHHH-h-----CCCCEEEECCCC-HHHHHHHHH-----cC
Confidence 3456679999 76654421 111 2 233344433221 1 346677899995 789999998 68
Q ss_pred CC
Q psy969 80 PD 81 (106)
Q Consensus 80 a~ 81 (106)
++
T Consensus 172 a~ 173 (196)
T cd00564 172 AD 173 (196)
T ss_pred CC
Confidence 86
No 141
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=82.99 E-value=8.5 Score=31.19 Aligned_cols=79 Identities=18% Similarity=0.149 Sum_probs=49.1
Q ss_pred hhhHHHhhCCCc-cc--CCCC------CC----CCCCCCCCCch-HHHHHHHHHHHHhhhcCCc--eeEeecC-----CC
Q psy969 3 RPRKVAFKGSNF-RT--LHGR------GP----DSTSYGNVCNT-CGIIMCSAIKHFHKLSGKK--IGLKPAG-----GI 61 (106)
Q Consensus 3 ~~~iai~aGadF-KT--STG~------~~----~gat~~~~~~~-~v~lm~~~i~~~~~~~~~~--vgiKaaG-----GI 61 (106)
+++.|.++|.|. .= ..|| .| ..-.||.. ++ ..+++.+.+++.++..++. ++||.+. |-
T Consensus 142 aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGs-lenR~r~~~eiv~aIR~~vG~d~~v~iRi~~~D~~~~g 220 (353)
T cd02930 142 CAALAREAGYDGVEIMGSEGYLINQFLAPRTNKRTDEWGGS-FENRMRFPVEIVRAVRAAVGEDFIIIYRLSMLDLVEGG 220 (353)
T ss_pred HHHHHHHcCCCEEEEecccchHHHHhcCCccCCCcCccCCC-HHHHhHHHHHHHHHHHHHcCCCceEEEEecccccCCCC
Confidence 467788899998 54 2221 11 11112221 33 4777778888887878764 7888763 12
Q ss_pred CCHHHHHHHHHHHHhhCCCCcc
Q psy969 62 STFEDSVRWIYLVLIMLGPDWL 83 (106)
Q Consensus 62 rt~~~a~~~i~l~~~~lGa~w~ 83 (106)
-+.++++++.+..++ +|.||+
T Consensus 221 ~~~~e~~~i~~~Le~-~G~d~i 241 (353)
T cd02930 221 STWEEVVALAKALEA-AGADIL 241 (353)
T ss_pred CCHHHHHHHHHHHHH-cCCCEE
Confidence 478888888877654 576665
No 142
>TIGR00875 fsa_talC_mipB fructose-6-phosphate aldolase, TalC/MipB family. This model represents a family that includes the E. coli transaldolase homologs TalC and MipB, both shown to be fructose-6-phosphate aldolases rather than transaldolases as previously thought. It is related to but distinct from the transaldolase family of E. coli TalA and TalB. The member from Bacillus subtilis becomes phosphorylated during early stationary phase but not during exponential growth.
Probab=82.84 E-value=5.5 Score=30.83 Aligned_cols=64 Identities=16% Similarity=0.190 Sum_probs=40.5
Q ss_pred hHHHhhCCCc-ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969 5 RKVAFKGSNF-RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD 81 (106)
Q Consensus 5 ~iai~aGadF-KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~ 81 (106)
.+|.++|||| --=-|.... . + .+-+.++++ +.++++..+.+..|.+|. +|+.+|+.+... +|++
T Consensus 116 ~~Aa~aGa~yispyvgRi~d--~-g---~dg~~~v~~-~~~~~~~~~~~tkIlaAS-~r~~~~v~~~~~-----~G~d 180 (213)
T TIGR00875 116 LLAAKAGATYVSPFVGRLDD--I-G---GDGMKLIEE-VKTIFENHAPDTEVIAAS-VRHPRHVLEAAL-----IGAD 180 (213)
T ss_pred HHHHHcCCCEEEeecchHHH--c-C---CCHHHHHHH-HHHHHHHcCCCCEEEEec-cCCHHHHHHHHH-----cCCC
Confidence 4678889998 443443211 1 1 112333332 334444457789999974 999999999988 7997
No 143
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=82.76 E-value=2.8 Score=33.65 Aligned_cols=23 Identities=30% Similarity=0.343 Sum_probs=20.1
Q ss_pred eEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969 54 GLKPAGGISTFEDSVRWIYLVLIMLGPD 81 (106)
Q Consensus 54 giKaaGGIrt~~~a~~~i~l~~~~lGa~ 81 (106)
-+=.=|||||.|||.+|.+ +|+|
T Consensus 193 ~LivGGGIrs~E~A~~~a~-----agAD 215 (240)
T COG1646 193 PLIVGGGIRSPEQAREMAE-----AGAD 215 (240)
T ss_pred eEEEcCCcCCHHHHHHHHH-----cCCC
Confidence 5666699999999999999 7987
No 144
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=82.44 E-value=4.2 Score=30.78 Aligned_cols=63 Identities=19% Similarity=0.093 Sum_probs=37.1
Q ss_pred hHHHhhCCCcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969 5 RKVAFKGSNFRTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD 81 (106)
Q Consensus 5 ~iai~aGadFKTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~ 81 (106)
+.+.+.|+|+-+-|+....+.. .. -+..++.+..+ .-.+-|=++|||++.+++.++++. .|++
T Consensus 156 ~~l~~~G~d~i~v~~i~~~g~~-~g---~~~~~i~~i~~------~~~~pvia~GGi~~~~di~~~l~~----~g~d 218 (243)
T cd04731 156 KEVEELGAGEILLTSMDRDGTK-KG---YDLELIRAVSS------AVNIPVIASGGAGKPEHFVEAFEE----GGAD 218 (243)
T ss_pred HHHHHCCCCEEEEeccCCCCCC-CC---CCHHHHHHHHh------hCCCCEEEeCCCCCHHHHHHHHHh----CCCC
Confidence 4566789998334444433322 00 12333332221 125778899999999999999983 3664
No 145
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=82.28 E-value=5.9 Score=33.29 Aligned_cols=66 Identities=17% Similarity=0.170 Sum_probs=42.2
Q ss_pred hhHHHhhCCCc-ccC-------CCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHH
Q psy969 4 PRKVAFKGSNF-RTL-------HGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVL 75 (106)
Q Consensus 4 ~~iai~aGadF-KTS-------TG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~ 75 (106)
++.++++|||. |-+ |+....|+- -|=+.++....++.+ +..+-|=+=||||..-|...-+.
T Consensus 164 a~~Li~aGAD~ikVgiGpGSicttR~~~Gvg--~pqltAv~~~a~aa~------~~~v~VIaDGGIr~~gDI~KALA--- 232 (343)
T TIGR01305 164 VEELILSGADIVKVGIGPGSVCTTRTKTGVG--YPQLSAVIECADAAH------GLKGHIISDGGCTCPGDVAKAFG--- 232 (343)
T ss_pred HHHHHHcCCCEEEEcccCCCcccCceeCCCC--cCHHHHHHHHHHHhc------cCCCeEEEcCCcCchhHHHHHHH---
Confidence 56788999999 955 333222222 010333444333321 23678889999999999999888
Q ss_pred hhCCCCc
Q psy969 76 IMLGPDW 82 (106)
Q Consensus 76 ~~lGa~w 82 (106)
+|+++
T Consensus 233 --~GAd~ 237 (343)
T TIGR01305 233 --AGADF 237 (343)
T ss_pred --cCCCE
Confidence 79874
No 146
>KOG1436|consensus
Probab=81.70 E-value=2.6 Score=35.80 Aligned_cols=38 Identities=24% Similarity=0.351 Sum_probs=33.1
Q ss_pred HHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCCc
Q psy969 40 SAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDW 82 (106)
Q Consensus 40 ~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~w 82 (106)
+.++++|+++.++|-|=--|||.+-+||.+.|. +|+..
T Consensus 319 ~~vR~mY~lt~g~IpiIG~GGV~SG~DA~Ekir-----aGASl 356 (398)
T KOG1436|consen 319 NTVRAMYTLTRGKIPIIGCGGVSSGKDAYEKIR-----AGASL 356 (398)
T ss_pred HHHHHHHHhccCCCceEeecCccccHhHHHHHh-----cCchH
Confidence 456777888999999999999999999999999 68853
No 147
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=81.63 E-value=5 Score=31.93 Aligned_cols=59 Identities=24% Similarity=0.178 Sum_probs=34.1
Q ss_pred hHHHhhCCCcccCCCCCCCCCCCCCCC-chHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHH
Q psy969 5 RKVAFKGSNFRTLHGRGPDSTSYGNVC-NTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYL 73 (106)
Q Consensus 5 ~iai~aGadFKTSTG~~~~gat~~~~~-~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l 73 (106)
+.+.++|+|+-|-+|..+.+. |..+. .+.++.+++. + ++-|=+.|||+|.+++.++++.
T Consensus 154 ~~l~~~G~d~i~vh~r~~~~~-~~~~~~~~~i~~i~~~-------~--~ipvi~nGgI~~~~da~~~l~~ 213 (319)
T TIGR00737 154 RIAEDAGAQAVTLHGRTRAQG-YSGEANWDIIARVKQA-------V--RIPVIGNGDIFSPEDAKAMLET 213 (319)
T ss_pred HHHHHhCCCEEEEEccccccc-CCCchhHHHHHHHHHc-------C--CCcEEEeCCCCCHHHHHHHHHh
Confidence 456678999944444322111 10110 3333333322 2 3667789999999999999964
No 148
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=81.30 E-value=4.6 Score=34.36 Aligned_cols=60 Identities=28% Similarity=0.324 Sum_probs=38.1
Q ss_pred hhhHHHhhCCCc-c--cCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCC
Q psy969 3 RPRKVAFKGSNF-R--TLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLG 79 (106)
Q Consensus 3 ~~~iai~aGadF-K--TSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lG 79 (106)
+.+..+++|+|+ - ++.|. +.+ ..+.+ +.|++ .. +.+-| .+|+|-|.++|+.+++ +|
T Consensus 157 ~v~~lv~aGvDvI~iD~a~g~---~~~-------~~~~v-~~ik~---~~-p~~~v-i~g~V~T~e~a~~l~~-----aG 215 (404)
T PRK06843 157 RVEELVKAHVDILVIDSAHGH---STR-------IIELV-KKIKT---KY-PNLDL-IAGNIVTKEAALDLIS-----VG 215 (404)
T ss_pred HHHHHHhcCCCEEEEECCCCC---Chh-------HHHHH-HHHHh---hC-CCCcE-EEEecCCHHHHHHHHH-----cC
Confidence 456788999999 5 55543 222 22222 22322 12 22222 2689999999999999 79
Q ss_pred CCcc
Q psy969 80 PDWL 83 (106)
Q Consensus 80 a~w~ 83 (106)
+|++
T Consensus 216 aD~I 219 (404)
T PRK06843 216 ADCL 219 (404)
T ss_pred CCEE
Confidence 9986
No 149
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=81.26 E-value=10 Score=28.22 Aligned_cols=24 Identities=38% Similarity=0.595 Sum_probs=20.6
Q ss_pred eeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969 53 IGLKPAGGISTFEDSVRWIYLVLIMLGPD 81 (106)
Q Consensus 53 vgiKaaGGIrt~~~a~~~i~l~~~~lGa~ 81 (106)
+-|=+.|||++.+++.++++ +|++
T Consensus 74 ~pv~~~GgI~~~e~~~~~~~-----~Gad 97 (234)
T cd04732 74 IPVQVGGGIRSLEDIERLLD-----LGVS 97 (234)
T ss_pred CCEEEeCCcCCHHHHHHHHH-----cCCC
Confidence 45666899999999999999 7986
No 150
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=81.21 E-value=5.8 Score=31.22 Aligned_cols=22 Identities=32% Similarity=0.425 Sum_probs=18.8
Q ss_pred EeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969 55 LKPAGGISTFEDSVRWIYLVLIMLGPD 81 (106)
Q Consensus 55 iKaaGGIrt~~~a~~~i~l~~~~lGa~ 81 (106)
|=+-||||+.+++.+++. .|++
T Consensus 187 vivGGGIrs~e~a~~~l~-----~GAD 208 (232)
T PRK04169 187 LIYGGGIRSPEQARELMA-----AGAD 208 (232)
T ss_pred EEEECCCCCHHHHHHHHH-----hCCC
Confidence 445899999999999888 6886
No 151
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=81.10 E-value=7.3 Score=31.82 Aligned_cols=59 Identities=20% Similarity=0.197 Sum_probs=41.8
Q ss_pred hHHHhhCCCc-ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCCcc
Q psy969 5 RKVAFKGSNF-RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWL 83 (106)
Q Consensus 5 ~iai~aGadF-KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~w~ 83 (106)
+.++++|||- . - .+-+ |++++...+.+ ++++-+=+|||| |++.+.+|.. .|.|
T Consensus 211 ~~a~~agaDiIm-L-----Dnms-----pe~l~~av~~~-------~~~~~leaSGGI-~~~ni~~yA~-----tGVD-- 264 (290)
T PRK06559 211 EEAAAAGADIIM-L-----DNMS-----LEQIEQAITLI-------AGRSRIECSGNI-DMTTISRFRG-----LAID-- 264 (290)
T ss_pred HHHHHcCCCEEE-E-----CCCC-----HHHHHHHHHHh-------cCceEEEEECCC-CHHHHHHHHh-----cCCC--
Confidence 4567778877 4 1 3344 77766666544 457899999999 5888899988 7997
Q ss_pred CCCceeEeccc
Q psy969 84 NKDLFRIGASS 94 (106)
Q Consensus 84 ~~~~~RiGtSs 94 (106)
.|-+|+
T Consensus 265 -----~Is~ga 270 (290)
T PRK06559 265 -----YVSSGS 270 (290)
T ss_pred -----EEEeCc
Confidence 665554
No 152
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=81.00 E-value=4.4 Score=33.78 Aligned_cols=61 Identities=11% Similarity=0.116 Sum_probs=38.5
Q ss_pred hhhHHHhhCCCc-cc-----CCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHh
Q psy969 3 RPRKVAFKGSNF-RT-----LHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLI 76 (106)
Q Consensus 3 ~~~iai~aGadF-KT-----STG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~ 76 (106)
.++.++++|+|+ -+ ++.|+..... +++ +.+.++++ .+-|=+ |+|.|.++|+++++
T Consensus 146 ~a~~l~eaGvd~I~vhgrt~~~~h~~~~~~-----~~~---i~~~ik~~------~ipVIa-G~V~t~e~A~~l~~---- 206 (368)
T PRK08649 146 LAPTVVEAGVDLFVIQGTVVSAEHVSKEGE-----PLN---LKEFIYEL------DVPVIV-GGCVTYTTALHLMR---- 206 (368)
T ss_pred HHHHHHHCCCCEEEEeccchhhhccCCcCC-----HHH---HHHHHHHC------CCCEEE-eCCCCHHHHHHHHH----
Confidence 357788999999 54 4444322223 443 34444321 233433 89999999999998
Q ss_pred hCCCCcc
Q psy969 77 MLGPDWL 83 (106)
Q Consensus 77 ~lGa~w~ 83 (106)
+|+|-+
T Consensus 207 -aGAD~V 212 (368)
T PRK08649 207 -TGAAGV 212 (368)
T ss_pred -cCCCEE
Confidence 799754
No 153
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=80.98 E-value=6.1 Score=30.99 Aligned_cols=27 Identities=37% Similarity=0.395 Sum_probs=22.1
Q ss_pred ecCCCCCHHHHHHHHHHHHhhCCCCccCCCceeEecc
Q psy969 57 PAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGAS 93 (106)
Q Consensus 57 aaGGIrt~~~a~~~i~l~~~~lGa~w~~~~~~RiGtS 93 (106)
+-|||.|.+++.++.+ +|++ .+-+|++
T Consensus 216 aegGI~t~ed~~~~~~-----~Gad-----~vlVGsa 242 (260)
T PRK00278 216 SESGIFTPEDLKRLAK-----AGAD-----AVLVGES 242 (260)
T ss_pred EEeCCCCHHHHHHHHH-----cCCC-----EEEECHH
Confidence 4489999999999999 6874 5677776
No 154
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=80.94 E-value=7.8 Score=29.13 Aligned_cols=63 Identities=17% Similarity=0.130 Sum_probs=35.9
Q ss_pred hHHHhhCCCcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969 5 RKVAFKGSNFRTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD 81 (106)
Q Consensus 5 ~iai~aGadFKTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~ 81 (106)
+.+.+.|+|+-+-|+....+.. .. .+.+++.+..+ . -.+-|=++|||++++++.+.+.. .|++
T Consensus 160 ~~~~~~G~d~i~i~~i~~~g~~-~g---~~~~~~~~i~~----~--~~ipvia~GGi~s~~di~~~l~~----~gad 222 (232)
T TIGR03572 160 REAEQLGAGEILLNSIDRDGTM-KG---YDLELIKTVSD----A--VSIPVIALGGAGSLDDLVEVALE----AGAS 222 (232)
T ss_pred HHHHHcCCCEEEEeCCCccCCc-CC---CCHHHHHHHHh----h--CCCCEEEECCCCCHHHHHHHHHH----cCCC
Confidence 4566789998333443332221 11 13333333221 1 24668899999999999994442 5774
No 155
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=80.82 E-value=4.3 Score=31.68 Aligned_cols=24 Identities=13% Similarity=-0.033 Sum_probs=21.4
Q ss_pred eeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969 53 IGLKPAGGISTFEDSVRWIYLVLIMLGPD 81 (106)
Q Consensus 53 vgiKaaGGIrt~~~a~~~i~l~~~~lGa~ 81 (106)
+-|=..|||||.+++..+++ +|++
T Consensus 75 ~~v~vgGGIrs~e~~~~~l~-----~Ga~ 98 (243)
T TIGR01919 75 VVEELSGGRRDDSSLRAALT-----GGRA 98 (243)
T ss_pred CCEEEcCCCCCHHHHHHHHH-----cCCC
Confidence 56778899999999999999 7986
No 156
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=80.74 E-value=7.6 Score=31.82 Aligned_cols=53 Identities=15% Similarity=0.156 Sum_probs=38.2
Q ss_pred hHHHhhCCCc-ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969 5 RKVAFKGSNF-RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD 81 (106)
Q Consensus 5 ~iai~aGadF-KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~ 81 (106)
+.++++|||. .= .+-+ |++++...+.+ ++++-+=+|||| |++.+.+|.+ .|.|
T Consensus 219 ~eA~~aGaDiImL------Dnms-----pe~l~~av~~~-------~~~~~lEaSGGI-t~~ni~~yA~-----tGVD 272 (294)
T PRK06978 219 ETALAHGAQSVLL------DNFT-----LDMMREAVRVT-------AGRAVLEVSGGV-NFDTVRAFAE-----TGVD 272 (294)
T ss_pred HHHHHcCCCEEEE------CCCC-----HHHHHHHHHhh-------cCCeEEEEECCC-CHHHHHHHHh-----cCCC
Confidence 4567788887 41 2334 67666655443 457899999999 5888999988 7997
No 157
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=80.49 E-value=7.2 Score=30.09 Aligned_cols=61 Identities=15% Similarity=0.055 Sum_probs=39.3
Q ss_pred hhHHHhhCCCc--ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969 4 PRKVAFKGSNF--RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD 81 (106)
Q Consensus 4 ~~iai~aGadF--KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~ 81 (106)
++..+++|... -|-|. +...+.+.+..++| +++-|= +|.|-|.+|+.+.++ +|++
T Consensus 22 a~al~~gGi~~iEit~~t------------p~a~~~I~~l~~~~-----~~~~vG-AGTVl~~e~a~~ai~-----aGA~ 78 (201)
T PRK06015 22 ARALAAGGLPAIEITLRT------------PAALDAIRAVAAEV-----EEAIVG-AGTILNAKQFEDAAK-----AGSR 78 (201)
T ss_pred HHHHHHCCCCEEEEeCCC------------ccHHHHHHHHHHHC-----CCCEEe-eEeCcCHHHHHHHHH-----cCCC
Confidence 46677788877 66652 33444443332232 345444 499999999999999 7998
Q ss_pred cc-CCCc
Q psy969 82 WL-NKDL 87 (106)
Q Consensus 82 w~-~~~~ 87 (106)
++ +|+.
T Consensus 79 FivSP~~ 85 (201)
T PRK06015 79 FIVSPGT 85 (201)
T ss_pred EEECCCC
Confidence 63 5543
No 158
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=80.14 E-value=5.1 Score=29.82 Aligned_cols=61 Identities=13% Similarity=-0.132 Sum_probs=40.4
Q ss_pred hhHHHhhCCCc-ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCCc
Q psy969 4 PRKVAFKGSNF-RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDW 82 (106)
Q Consensus 4 ~~iai~aGadF-KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~w 82 (106)
++...++||+. --.|=-...+-. +++++.+++.+ .-.|.+| |+|++.+++..+++ +|+++
T Consensus 37 A~~~~~~GA~~l~v~~~~~~~~g~-----~~~~~~i~~~v-------~iPi~~~--~~i~~~~~v~~~~~-----~Gad~ 97 (217)
T cd00331 37 AKAYEKAGAAAISVLTEPKYFQGS-----LEDLRAVREAV-------SLPVLRK--DFIIDPYQIYEARA-----AGADA 97 (217)
T ss_pred HHHHHHcCCCEEEEEeCccccCCC-----HHHHHHHHHhc-------CCCEEEC--CeecCHHHHHHHHH-----cCCCE
Confidence 35566778887 433321122334 66777776653 4567776 79999999999999 79974
Q ss_pred c
Q psy969 83 L 83 (106)
Q Consensus 83 ~ 83 (106)
+
T Consensus 98 v 98 (217)
T cd00331 98 V 98 (217)
T ss_pred E
Confidence 3
No 159
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=80.04 E-value=9.2 Score=28.56 Aligned_cols=25 Identities=24% Similarity=0.445 Sum_probs=21.6
Q ss_pred ceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969 52 KIGLKPAGGISTFEDSVRWIYLVLIMLGPD 81 (106)
Q Consensus 52 ~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~ 81 (106)
.+-|=++|||++.+++.++.+ .|++
T Consensus 189 ~ipvia~GGi~~~~di~~~~~-----~Gad 213 (230)
T TIGR00007 189 NVPVIASGGVSSIDDLIALKK-----LGVY 213 (230)
T ss_pred CCCEEEeCCCCCHHHHHHHHH-----CCCC
Confidence 466889999999999999887 6875
No 160
>PRK01362 putative translaldolase; Provisional
Probab=79.89 E-value=8.7 Score=29.76 Aligned_cols=64 Identities=14% Similarity=0.027 Sum_probs=41.8
Q ss_pred hHHHhhCCCc-ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969 5 RKVAFKGSNF-RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD 81 (106)
Q Consensus 5 ~iai~aGadF-KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~ 81 (106)
-+|.++||+| --=-|... ..+.+-.+.++-|.+. .+..+.+..|.+|. +|+.+|+.+... +|++
T Consensus 116 ~~Aa~aGa~yispyvgRi~---d~g~dg~~~i~~~~~~----~~~~~~~tkilaAS-~r~~~~v~~~~~-----~G~d 180 (214)
T PRK01362 116 LLAAKAGATYVSPFVGRLD---DIGTDGMELIEDIREI----YDNYGFDTEIIAAS-VRHPMHVLEAAL-----AGAD 180 (214)
T ss_pred HHHHhcCCcEEEeecchHh---hcCCCHHHHHHHHHHH----HHHcCCCcEEEEee-cCCHHHHHHHHH-----cCCC
Confidence 4678889999 54444331 1122223344444444 34456789999974 999999999998 7997
No 161
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=79.72 E-value=8.1 Score=34.61 Aligned_cols=77 Identities=17% Similarity=0.161 Sum_probs=50.9
Q ss_pred hhhHHHhhCCCc-cc--CCCC------CCC--------CCCCCCCCch-HHHHHHHHHHHHhhhcCC--ceeEeecC---
Q psy969 3 RPRKVAFKGSNF-RT--LHGR------GPD--------STSYGNVCNT-CGIIMCSAIKHFHKLSGK--KIGLKPAG--- 59 (106)
Q Consensus 3 ~~~iai~aGadF-KT--STG~------~~~--------gat~~~~~~~-~v~lm~~~i~~~~~~~~~--~vgiKaaG--- 59 (106)
+++.|.++|.|+ -= .+|| .|. |.+ +| ..+++++.++..++..+. .|++|.+.
T Consensus 556 aA~~a~~aGfDgveih~ahGyLl~qFlsp~~N~RtD~yGGs-----lenR~r~~~eiv~~ir~~~~~~~~v~~ri~~~~~ 630 (765)
T PRK08255 556 AARRAAEAGFDWLELHCAHGYLLSSFISPLTNQRTDEYGGS-----LENRLRYPLEVFRAVRAVWPAEKPMSVRISAHDW 630 (765)
T ss_pred HHHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCC-----HHHHhHHHHHHHHHHHHhcCCCCeeEEEEccccc
Confidence 467788899998 43 3332 121 234 44 467777777777777765 59999994
Q ss_pred --CCCCHHHHHHHHHHHHhhCCCCccCC
Q psy969 60 --GISTFEDSVRWIYLVLIMLGPDWLNK 85 (106)
Q Consensus 60 --GIrt~~~a~~~i~l~~~~lGa~w~~~ 85 (106)
|--+.++++++++..++ +|.+|++-
T Consensus 631 ~~~g~~~~~~~~~~~~l~~-~g~d~i~v 657 (765)
T PRK08255 631 VEGGNTPDDAVEIARAFKA-AGADLIDV 657 (765)
T ss_pred cCCCCCHHHHHHHHHHHHh-cCCcEEEe
Confidence 23478888888776544 58888643
No 162
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=79.51 E-value=8.6 Score=31.22 Aligned_cols=59 Identities=15% Similarity=0.075 Sum_probs=41.7
Q ss_pred hHHHhhCCCc-ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCCcc
Q psy969 5 RKVAFKGSNF-RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWL 83 (106)
Q Consensus 5 ~iai~aGadF-KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~w~ 83 (106)
+.++++|||- . - .+-+ +++++...+.+ +++.-|=+|||| |.+.+.+|.. .|+|
T Consensus 207 ~ea~~~gaDiIm-L-----Dn~s-----~e~l~~av~~~-------~~~~~leaSGgI-~~~ni~~yA~-----tGVD-- 260 (281)
T PRK06543 207 EPVLAAGVDTIM-L-----DNFS-----LDDLREGVELV-------DGRAIVEASGNV-NLNTVGAIAS-----TGVD-- 260 (281)
T ss_pred HHHHhcCCCEEE-E-----CCCC-----HHHHHHHHHHh-------CCCeEEEEECCC-CHHHHHHHHh-----cCCC--
Confidence 3456777777 4 1 2344 77777766654 466789999999 6888999988 7997
Q ss_pred CCCceeEeccc
Q psy969 84 NKDLFRIGASS 94 (106)
Q Consensus 84 ~~~~~RiGtSs 94 (106)
+|-+|+
T Consensus 261 -----~Is~ga 266 (281)
T PRK06543 261 -----VISVGA 266 (281)
T ss_pred -----EEEeCc
Confidence 665554
No 163
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=79.07 E-value=2.1 Score=33.18 Aligned_cols=31 Identities=19% Similarity=0.302 Sum_probs=24.3
Q ss_pred eEeecCCCCCHHHHHHHHHHHHhhCCCCccCCCceeEeccc
Q psy969 54 GLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGASS 94 (106)
Q Consensus 54 giKaaGGIrt~~~a~~~i~l~~~~lGa~w~~~~~~RiGtSs 94 (106)
.|=.-|||||.+++.++++ +|++ ..-|||..
T Consensus 75 ~v~vGGGIrs~e~~~~~l~-----~Ga~-----kvvigt~a 105 (232)
T PRK13586 75 WIQVGGGIRDIEKAKRLLS-----LDVN-----ALVFSTIV 105 (232)
T ss_pred CEEEeCCcCCHHHHHHHHH-----CCCC-----EEEECchh
Confidence 4777899999999999999 7985 23456653
No 164
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=78.75 E-value=4.7 Score=30.14 Aligned_cols=25 Identities=36% Similarity=0.668 Sum_probs=20.5
Q ss_pred CCceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969 50 GKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD 81 (106)
Q Consensus 50 ~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~ 81 (106)
+.++.+ .||||+.+++..+++ +|++
T Consensus 72 ~~pi~~--ggGI~~~ed~~~~~~-----~Ga~ 96 (230)
T TIGR00007 72 GVPVQV--GGGIRSLEDVEKLLD-----LGVD 96 (230)
T ss_pred CCCEEE--eCCcCCHHHHHHHHH-----cCCC
Confidence 445555 689999999999999 7986
No 165
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=78.55 E-value=9.6 Score=30.91 Aligned_cols=60 Identities=17% Similarity=0.055 Sum_probs=41.0
Q ss_pred hHHHhhCCCc-ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCCcc
Q psy969 5 RKVAFKGSNF-RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWL 83 (106)
Q Consensus 5 ~iai~aGadF-KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~w~ 83 (106)
+.++++|+|. .= .+-+ +++++...+.+ +++.-+=+|||| |++.+.+|.+ .|.|
T Consensus 208 ~ea~~~gaDiI~L------Dn~s-----~e~l~~av~~~-------~~~~~leaSGGI-~~~ni~~yA~-----tGVD-- 261 (281)
T PRK06106 208 EEALELGVDAVLL------DNMT-----PDTLREAVAIV-------AGRAITEASGRI-TPETAPAIAA-----SGVD-- 261 (281)
T ss_pred HHHHHcCCCEEEe------CCCC-----HHHHHHHHHHh-------CCCceEEEECCC-CHHHHHHHHh-----cCCC--
Confidence 3466777777 41 2334 66666655543 355569999999 5788999998 7997
Q ss_pred CCCceeEeccch
Q psy969 84 NKDLFRIGASSL 95 (106)
Q Consensus 84 ~~~~~RiGtSs~ 95 (106)
+|.++++
T Consensus 262 -----~Is~Gal 268 (281)
T PRK06106 262 -----LISVGWL 268 (281)
T ss_pred -----EEEeChh
Confidence 7776654
No 166
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=78.42 E-value=5.2 Score=32.43 Aligned_cols=63 Identities=21% Similarity=0.202 Sum_probs=37.5
Q ss_pred hhhHHHhhCCCc-ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969 3 RPRKVAFKGSNF-RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD 81 (106)
Q Consensus 3 ~~~iai~aGadF-KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~ 81 (106)
+.+.++++|+|+ --++.++. .+...-+.+.+++ .. +.+.|=+ |.|-|.++|..+++ +|+|
T Consensus 98 ~~~~l~eagv~~I~vd~~~G~---------~~~~~~~i~~ik~---~~-p~v~Vi~-G~v~t~~~A~~l~~-----aGaD 158 (325)
T cd00381 98 RAEALVEAGVDVIVIDSAHGH---------SVYVIEMIKFIKK---KY-PNVDVIA-GNVVTAEAARDLID-----AGAD 158 (325)
T ss_pred HHHHHHhcCCCEEEEECCCCC---------cHHHHHHHHHHHH---HC-CCceEEE-CCCCCHHHHHHHHh-----cCCC
Confidence 356788899998 54443321 1122222222322 12 2333333 99999999999999 7998
Q ss_pred ccC
Q psy969 82 WLN 84 (106)
Q Consensus 82 w~~ 84 (106)
.+.
T Consensus 159 ~I~ 161 (325)
T cd00381 159 GVK 161 (325)
T ss_pred EEE
Confidence 753
No 167
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=78.17 E-value=7.5 Score=31.45 Aligned_cols=61 Identities=13% Similarity=0.090 Sum_probs=37.3
Q ss_pred hhHHHhhCCCcccCCCCCCCCCCCCCC-CchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHH
Q psy969 4 PRKVAFKGSNFRTLHGRGPDSTSYGNV-CNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYL 73 (106)
Q Consensus 4 ~~iai~aGadFKTSTG~~~~gat~~~~-~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l 73 (106)
++++.++|+|+-|-+|.....--++.+ ..+.++.+++. -++-|=+.|||.|.+||.++++.
T Consensus 154 a~~l~~~Gvd~i~Vh~Rt~~~~y~g~~~~~~~i~~ik~~---------~~iPVi~nGdI~t~~da~~~l~~ 215 (312)
T PRK10550 154 ADAVQQAGATELVVHGRTKEDGYRAEHINWQAIGEIRQR---------LTIPVIANGEIWDWQSAQQCMAI 215 (312)
T ss_pred HHHHHhcCCCEEEECCCCCccCCCCCcccHHHHHHHHhh---------cCCcEEEeCCcCCHHHHHHHHhc
Confidence 567788999994444432211000111 14445555443 24667789999999999999963
No 168
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=77.58 E-value=22 Score=27.46 Aligned_cols=61 Identities=15% Similarity=0.081 Sum_probs=39.5
Q ss_pred hhHHHhhCCCc--ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969 4 PRKVAFKGSNF--RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD 81 (106)
Q Consensus 4 ~~iai~aGadF--KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~ 81 (106)
++..+++|.++ -|.+. +...+.+.+..++| +++-|= +|.|-|.+|+.+.++ +|++
T Consensus 26 ~~al~~~Gi~~iEit~~t------------~~a~~~i~~l~~~~-----~~~~vG-AGTVl~~~~a~~a~~-----aGA~ 82 (204)
T TIGR01182 26 AKALIEGGLRVLEVTLRT------------PVALDAIRLLRKEV-----PDALIG-AGTVLNPEQLRQAVD-----AGAQ 82 (204)
T ss_pred HHHHHHcCCCEEEEeCCC------------ccHHHHHHHHHHHC-----CCCEEE-EEeCCCHHHHHHHHH-----cCCC
Confidence 56778888888 66643 23333333322333 344444 499999999999999 7999
Q ss_pred cc-CCCc
Q psy969 82 WL-NKDL 87 (106)
Q Consensus 82 w~-~~~~ 87 (106)
++ +|+.
T Consensus 83 FivsP~~ 89 (204)
T TIGR01182 83 FIVSPGL 89 (204)
T ss_pred EEECCCC
Confidence 63 5554
No 169
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=77.52 E-value=8.4 Score=33.19 Aligned_cols=61 Identities=18% Similarity=0.137 Sum_probs=37.6
Q ss_pred hhhHHHhhCCCc-c-cCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCC
Q psy969 3 RPRKVAFKGSNF-R-TLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGP 80 (106)
Q Consensus 3 ~~~iai~aGadF-K-TSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa 80 (106)
+++..+++|+|+ - +++ .|-+ ...++.+. .|+ +..+ .+-|= +|.|-|.++|+.+++ +|+
T Consensus 245 ~~~~l~~ag~d~i~id~a----~G~s-----~~~~~~i~-~ik---~~~~-~~~v~-aG~V~t~~~a~~~~~-----aGa 304 (495)
T PTZ00314 245 RAAALIEAGVDVLVVDSS----QGNS-----IYQIDMIK-KLK---SNYP-HVDII-AGNVVTADQAKNLID-----AGA 304 (495)
T ss_pred HHHHHHHCCCCEEEEecC----CCCc-----hHHHHHHH-HHH---hhCC-CceEE-ECCcCCHHHHHHHHH-----cCC
Confidence 456788999999 4 332 2333 33333222 222 1122 33333 389999999999999 799
Q ss_pred Ccc
Q psy969 81 DWL 83 (106)
Q Consensus 81 ~w~ 83 (106)
+++
T Consensus 305 d~I 307 (495)
T PTZ00314 305 DGL 307 (495)
T ss_pred CEE
Confidence 875
No 170
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=77.44 E-value=7.2 Score=31.79 Aligned_cols=82 Identities=20% Similarity=0.067 Sum_probs=39.1
Q ss_pred hHHHhhCCCc-ccCCCCCC---CCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCC
Q psy969 5 RKVAFKGSNF-RTLHGRGP---DSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGP 80 (106)
Q Consensus 5 ~iai~aGadF-KTSTG~~~---~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa 80 (106)
+...+||||- ----|+.. .|+.....+.++++...+..+..++..++-+-+=--|-|.+++|+..+++..+.+-
T Consensus 164 ~~M~~AGaDiiv~H~GlT~gG~~Ga~~~~sl~~a~~~~~~i~~aa~~v~~dii~l~hGGPI~~p~D~~~~l~~t~~~~-- 241 (268)
T PF09370_consen 164 RAMAEAGADIIVAHMGLTTGGSIGAKTALSLEEAAERIQEIFDAARAVNPDIIVLCHGGPIATPEDAQYVLRNTKGIH-- 241 (268)
T ss_dssp HHHHHHT-SEEEEE-SS----------S--HHHHHHHHHHHHHHHHCC-TT-EEEEECTTB-SHHHHHHHHHH-TTEE--
T ss_pred HHHHHcCCCEEEecCCccCCCCcCccccCCHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHHHHHHhcCCCCC--
Confidence 3445889997 54444332 22322233334444444333333333444444444467999999999999642222
Q ss_pred CccCCCceeEeccch
Q psy969 81 DWLNKDLFRIGASSL 95 (106)
Q Consensus 81 ~w~~~~~~RiGtSs~ 95 (106)
--||.||.
T Consensus 242 -------Gf~G~Ss~ 249 (268)
T PF09370_consen 242 -------GFIGASSM 249 (268)
T ss_dssp -------EEEESTTT
T ss_pred -------EEecccch
Confidence 46899884
No 171
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=77.42 E-value=5.5 Score=29.97 Aligned_cols=24 Identities=33% Similarity=0.574 Sum_probs=20.2
Q ss_pred eeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969 53 IGLKPAGGISTFEDSVRWIYLVLIMLGPD 81 (106)
Q Consensus 53 vgiKaaGGIrt~~~a~~~i~l~~~~lGa~ 81 (106)
+-|=+.|||||.+++..+++ +|++
T Consensus 77 ~~l~v~GGi~~~~~~~~~~~-----~Ga~ 100 (241)
T PRK13585 77 VPVQLGGGIRSAEDAASLLD-----LGVD 100 (241)
T ss_pred CcEEEcCCcCCHHHHHHHHH-----cCCC
Confidence 44455899999999999999 7985
No 172
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=76.85 E-value=11 Score=30.44 Aligned_cols=72 Identities=19% Similarity=0.208 Sum_probs=40.4
Q ss_pred hhHHHhhCCCcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCCcc
Q psy969 4 PRKVAFKGSNFRTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWL 83 (106)
Q Consensus 4 ~~iai~aGadFKTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~w~ 83 (106)
.+.+.++|+|.-.-.|+..+|=.... .+....+...+++. . ++-|=+||||-|-+++.+++. +|++
T Consensus 149 A~~a~~~G~D~iv~qG~eAGGH~g~~--~~~~~~L~~~v~~~---~--~iPViaAGGI~dg~~iaaal~-----lGA~-- 214 (330)
T PF03060_consen 149 ARKAAKAGADAIVAQGPEAGGHRGFE--VGSTFSLLPQVRDA---V--DIPVIAAGGIADGRGIAAALA-----LGAD-- 214 (330)
T ss_dssp HHHHHHTT-SEEEEE-TTSSEE---S--SG-HHHHHHHHHHH------SS-EEEESS--SHHHHHHHHH-----CT-S--
T ss_pred HHHhhhcCCCEEEEeccccCCCCCcc--ccceeeHHHHHhhh---c--CCcEEEecCcCCHHHHHHHHH-----cCCC--
Confidence 46788999999445576554433100 23344444444443 2 277888999999999999999 7986
Q ss_pred CCCceeEec
Q psy969 84 NKDLFRIGA 92 (106)
Q Consensus 84 ~~~~~RiGt 92 (106)
..-+||
T Consensus 215 ---gV~~GT 220 (330)
T PF03060_consen 215 ---GVQMGT 220 (330)
T ss_dssp ---EEEESH
T ss_pred ---EeecCC
Confidence 344555
No 173
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=76.46 E-value=12 Score=29.57 Aligned_cols=62 Identities=19% Similarity=0.202 Sum_probs=42.9
Q ss_pred hHHHhhCCCc-ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCCcc
Q psy969 5 RKVAFKGSNF-RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWL 83 (106)
Q Consensus 5 ~iai~aGadF-KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~w~ 83 (106)
..++.+|+|| .=.+ -+ ++.++.+.+.+++ . +++-|=++|||. .+.+.+|.+ .|++
T Consensus 195 ~~A~~~gaD~I~ld~------~~-----~e~l~~~v~~i~~----~-~~i~i~asGGIt-~~ni~~~a~-----~Gad-- 250 (269)
T cd01568 195 EEALEAGADIIMLDN------MS-----PEELKEAVKLLKG----L-PRVLLEASGGIT-LENIRAYAE-----TGVD-- 250 (269)
T ss_pred HHHHHcCCCEEEECC------CC-----HHHHHHHHHHhcc----C-CCeEEEEECCCC-HHHHHHHHH-----cCCC--
Confidence 3567789999 6432 33 5666665554431 1 478899999996 788889998 7996
Q ss_pred CCCceeEeccch
Q psy969 84 NKDLFRIGASSL 95 (106)
Q Consensus 84 ~~~~~RiGtSs~ 95 (106)
.|.+|+.
T Consensus 251 -----~Isvgal 257 (269)
T cd01568 251 -----VISTGAL 257 (269)
T ss_pred -----EEEEcHH
Confidence 7766554
No 174
>KOG0538|consensus
Probab=76.35 E-value=16 Score=30.94 Aligned_cols=61 Identities=20% Similarity=0.139 Sum_probs=46.2
Q ss_pred hhHHHhhCCCc--ccCCCCC---CCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhC
Q psy969 4 PRKVAFKGSNF--RTLHGRG---PDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIML 78 (106)
Q Consensus 4 ~~iai~aGadF--KTSTG~~---~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~l 78 (106)
+++|.++|++- .+.+|=- ...|| ++....+.++ +++++-|=.=||||+-.|...-+. |
T Consensus 237 A~~Ave~G~~GIIVSNHGgRQlD~vpAt-----I~~L~Evv~a-------V~~ri~V~lDGGVR~G~DVlKALA-----L 299 (363)
T KOG0538|consen 237 ARKAVEAGVAGIIVSNHGGRQLDYVPAT-----IEALPEVVKA-------VEGRIPVFLDGGVRRGTDVLKALA-----L 299 (363)
T ss_pred HHHHHHhCCceEEEeCCCccccCcccch-----HHHHHHHHHH-------hcCceEEEEecCcccchHHHHHHh-----c
Confidence 46899999998 6677722 23466 5555554444 479999999999999999999999 6
Q ss_pred CCC
Q psy969 79 GPD 81 (106)
Q Consensus 79 Ga~ 81 (106)
|+.
T Consensus 300 GAk 302 (363)
T KOG0538|consen 300 GAK 302 (363)
T ss_pred ccc
Confidence 884
No 175
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=76.13 E-value=15 Score=28.64 Aligned_cols=65 Identities=17% Similarity=0.139 Sum_probs=40.1
Q ss_pred hhHHHhhCCCc--ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969 4 PRKVAFKGSNF--RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD 81 (106)
Q Consensus 4 ~~iai~aGadF--KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~ 81 (106)
++.++++|... -|-+. + .. .+.++.|++.. .+.. +++-|= +|.|.|.+|+.+.++ +|++
T Consensus 33 ~~al~~gGi~~iEiT~~t---p-~a-----~~~i~~l~~~~---~~~~-p~~~vG-aGTVl~~e~a~~a~~-----aGA~ 93 (222)
T PRK07114 33 IKACYDGGARVFEFTNRG---D-FA-----HEVFAELVKYA---AKEL-PGMILG-VGSIVDAATAALYIQ-----LGAN 93 (222)
T ss_pred HHHHHHCCCCEEEEeCCC---C-cH-----HHHHHHHHHHH---HhhC-CCeEEe-eEeCcCHHHHHHHHH-----cCCC
Confidence 45667777777 66542 1 12 44555554332 2222 345443 499999999999999 7999
Q ss_pred cc-CCCc
Q psy969 82 WL-NKDL 87 (106)
Q Consensus 82 w~-~~~~ 87 (106)
++ +|+.
T Consensus 94 FiVsP~~ 100 (222)
T PRK07114 94 FIVTPLF 100 (222)
T ss_pred EEECCCC
Confidence 63 6654
No 176
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=76.00 E-value=18 Score=28.79 Aligned_cols=53 Identities=21% Similarity=0.067 Sum_probs=34.7
Q ss_pred ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969 15 RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD 81 (106)
Q Consensus 15 KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~ 81 (106)
-+.+|+. |.. +..++.++.+.+.++++ ++.++-| =+||++.+++.++.+ .|+|
T Consensus 174 vS~~GvT--G~~--~~~~~~~~~~i~~ir~~---t~~Pi~v--GFGI~~~e~~~~~~~-----~GAD 226 (263)
T CHL00200 174 VSTTGVT--GLK--TELDKKLKKLIETIKKM---TNKPIIL--GFGISTSEQIKQIKG-----WNIN 226 (263)
T ss_pred EcCCCCC--CCC--ccccHHHHHHHHHHHHh---cCCCEEE--ECCcCCHHHHHHHHh-----cCCC
Confidence 4566643 222 23356677776666653 4455554 469999999999999 6886
No 177
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=75.98 E-value=5.2 Score=33.45 Aligned_cols=69 Identities=22% Similarity=0.205 Sum_probs=41.3
Q ss_pred hhHHHhhCCCc-ccCCCCCCCCCCC-----CCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhh
Q psy969 4 PRKVAFKGSNF-RTLHGRGPDSTSY-----GNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIM 77 (106)
Q Consensus 4 ~~iai~aGadF-KTSTG~~~~gat~-----~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~ 77 (106)
++-.+++|||. |-.-|=+..-+|. +-|=..+|....++.++ -.+-|=+=||||+.-|...-+.
T Consensus 163 a~~L~~aGad~vkVGiGpGsiCtTr~v~GvG~PQ~tAv~~~a~~a~~------~~v~iIADGGi~~sGDi~KAla----- 231 (352)
T PF00478_consen 163 AKDLIDAGADAVKVGIGPGSICTTREVTGVGVPQLTAVYECAEAARD------YGVPIIADGGIRTSGDIVKALA----- 231 (352)
T ss_dssp HHHHHHTT-SEEEESSSSSTTBHHHHHHSBSCTHHHHHHHHHHHHHC------TTSEEEEESS-SSHHHHHHHHH-----
T ss_pred HHHHHHcCCCEEEEeccCCcccccccccccCCcHHHHHHHHHHHhhh------ccCceeecCCcCcccceeeeee-----
Confidence 45678999999 9766522111110 11113345555544433 2588899999999999999988
Q ss_pred CCCCcc
Q psy969 78 LGPDWL 83 (106)
Q Consensus 78 lGa~w~ 83 (106)
+|++++
T Consensus 232 ~GAd~V 237 (352)
T PF00478_consen 232 AGADAV 237 (352)
T ss_dssp TT-SEE
T ss_pred ecccce
Confidence 799854
No 178
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=75.68 E-value=19 Score=29.60 Aligned_cols=70 Identities=13% Similarity=0.154 Sum_probs=48.1
Q ss_pred hhhHHHhhCCCc-c--cCCCCC------CC--------CCCCCCCCch-HHHHHHHHHHHHhhhcCC--ceeEeecC---
Q psy969 3 RPRKVAFKGSNF-R--TLHGRG------PD--------STSYGNVCNT-CGIIMCSAIKHFHKLSGK--KIGLKPAG--- 59 (106)
Q Consensus 3 ~~~iai~aGadF-K--TSTG~~------~~--------gat~~~~~~~-~v~lm~~~i~~~~~~~~~--~vgiKaaG--- 59 (106)
+++.|.++|.|. - -..||- |. |.+ +| ..+++++.+++.++.++. .|+||.+.
T Consensus 155 AA~ra~~aGfDgVEih~ahGyLl~QFlSp~~N~RtD~yGGs-----lenR~Rf~~eii~aIr~~vg~~~~v~vRls~~~~ 229 (370)
T cd02929 155 AALRARDAGFDIVYVYAAHGYLPLQFLLPRYNKRTDEYGGS-----LENRARFWRETLEDTKDAVGDDCAVATRFSVDEL 229 (370)
T ss_pred HHHHHHHcCCCEEEEcccccchHHHhhCccccCCccccCCC-----hHhhhHHHHHHHHHHHHHcCCCceEEEEecHHHh
Confidence 567888899998 3 344532 21 233 44 488888888888888875 58888862
Q ss_pred ----CCCCHHHHHHHHHHHHhh
Q psy969 60 ----GISTFEDSVRWIYLVLIM 77 (106)
Q Consensus 60 ----GIrt~~~a~~~i~l~~~~ 77 (106)
|..+.+++++++++.++.
T Consensus 230 ~~~~g~~~~~e~~~~~~~l~~~ 251 (370)
T cd02929 230 IGPGGIESEGEGVEFVEMLDEL 251 (370)
T ss_pred cCCCCCCCHHHHHHHHHHHHhh
Confidence 334889998888877663
No 179
>COG1304 idi Isopentenyl diphosphate isomerase (BS_ypgA, MTH48 and related proteins) [Coenzyme transport and metabolism]
Probab=75.58 E-value=5.3 Score=33.36 Aligned_cols=28 Identities=32% Similarity=0.493 Sum_probs=25.5
Q ss_pred cCCceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969 49 SGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD 81 (106)
Q Consensus 49 ~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~ 81 (106)
+++++-|=++||||+-.|+..-|. |||+
T Consensus 270 v~~~~~vi~dGGiR~G~Dv~KAlA-----LGA~ 297 (360)
T COG1304 270 VGDRIEVIADGGIRSGLDVAKALA-----LGAD 297 (360)
T ss_pred hCCCeEEEecCCCCCHHHHHHHHH-----hCCc
Confidence 577899999999999999999999 6885
No 180
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=75.30 E-value=6.3 Score=30.68 Aligned_cols=25 Identities=32% Similarity=0.446 Sum_probs=21.4
Q ss_pred ceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969 52 KIGLKPAGGISTFEDSVRWIYLVLIMLGPD 81 (106)
Q Consensus 52 ~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~ 81 (106)
.+-|=+.||||+++++.++++ +|++
T Consensus 74 ~~pv~~gGGi~s~~d~~~l~~-----~G~~ 98 (258)
T PRK01033 74 FMPLCYGGGIKTLEQAKKIFS-----LGVE 98 (258)
T ss_pred CCCEEECCCCCCHHHHHHHHH-----CCCC
Confidence 355778899999999999998 6886
No 181
>PRK12653 fructose-6-phosphate aldolase; Reviewed
Probab=75.14 E-value=14 Score=28.81 Aligned_cols=63 Identities=13% Similarity=0.113 Sum_probs=40.3
Q ss_pred HHHhhCCCc-ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969 6 KVAFKGSNF-RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD 81 (106)
Q Consensus 6 iai~aGadF-KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~ 81 (106)
+|..+||+| --=-|.... . +..-.+.++-|.+. ++..+.+..|.+|. +|+.+|+.+.+. +|++
T Consensus 119 ~Aa~aGa~yIspyvgR~~~--~-g~dg~~~i~~i~~~----~~~~~~~tkILaAS-~r~~~~v~~~~~-----~G~d 182 (220)
T PRK12653 119 LSALAGAEYVAPYVNRIDA--Q-GGSGIQTVTDLQQL----LKMHAPQAKVLAAS-FKTPRQALDCLL-----AGCE 182 (220)
T ss_pred HHHhcCCcEEEeecChHhh--c-CCChHHHHHHHHHH----HHhcCCCcEEEEEe-cCCHHHHHHHHH-----cCCC
Confidence 567889999 544443211 1 11113334444444 34457789999975 999999999888 7987
No 182
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=74.81 E-value=6.4 Score=30.76 Aligned_cols=31 Identities=26% Similarity=0.472 Sum_probs=24.5
Q ss_pred ceeEeecCCCCC-HHHHHHHHHHHHhhCCCCccCCCceeEeccc
Q psy969 52 KIGLKPAGGIST-FEDSVRWIYLVLIMLGPDWLNKDLFRIGASS 94 (106)
Q Consensus 52 ~vgiKaaGGIrt-~~~a~~~i~l~~~~lGa~w~~~~~~RiGtSs 94 (106)
.+.+=++|||.. .+.+.+|++ +|+ .-+|.+|
T Consensus 158 ~i~~~ptGGV~~~~~n~~~yl~-----aGa-------~avg~Gs 189 (222)
T PRK07114 158 WTKIMPTGGVEPTEENLKKWFG-----AGV-------TCVGMGS 189 (222)
T ss_pred CCeEEeCCCCCcchhcHHHHHh-----CCC-------EEEEECh
Confidence 577899999995 699999999 677 5777433
No 183
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=74.54 E-value=22 Score=28.89 Aligned_cols=79 Identities=18% Similarity=0.235 Sum_probs=50.1
Q ss_pred hhhHHHhhCCCc-c--cCCCC----------CCCCCCCCCCCch-HHHHHHHHHHHHhhhcC----C--ceeEeecC---
Q psy969 3 RPRKVAFKGSNF-R--TLHGR----------GPDSTSYGNVCNT-CGIIMCSAIKHFHKLSG----K--KIGLKPAG--- 59 (106)
Q Consensus 3 ~~~iai~aGadF-K--TSTG~----------~~~gat~~~~~~~-~v~lm~~~i~~~~~~~~----~--~vgiKaaG--- 59 (106)
+++.|.++|.|. - -..|| ....-.||.. ++ ..+++++.++..++.++ . .|++|.++
T Consensus 149 aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~R~D~yGGs-lenR~r~~~eii~~vr~~vg~~~~~~~~v~~R~s~~~~ 227 (353)
T cd04735 149 ATRRAIEAGFDGVEIHGANGYLIQQFFSPHSNRRTDEWGGS-LENRMRFPLAVVKAVQEVIDKHADKDFILGYRFSPEEP 227 (353)
T ss_pred HHHHHHHcCCCEEEEccccchHHHHhcCCccCCCCcccCCc-HHHHHHHHHHHHHHHHHHhccccCCCceEEEEECcccc
Confidence 467788899998 3 23332 1111112221 44 58888888888877776 2 58888764
Q ss_pred ---CCCCHHHHHHHHHHHHhhCCCCccC
Q psy969 60 ---GISTFEDSVRWIYLVLIMLGPDWLN 84 (106)
Q Consensus 60 ---GIrt~~~a~~~i~l~~~~lGa~w~~ 84 (106)
|+ +.++.++++.+.++ +|.+|++
T Consensus 228 ~~~g~-~~ee~~~i~~~L~~-~GvD~I~ 253 (353)
T cd04735 228 EEPGI-RMEDTLALVDKLAD-KGLDYLH 253 (353)
T ss_pred cCCCC-CHHHHHHHHHHHHH-cCCCEEE
Confidence 43 57888888877654 4888864
No 184
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=74.26 E-value=9.8 Score=29.36 Aligned_cols=58 Identities=17% Similarity=0.051 Sum_probs=34.7
Q ss_pred hHHHhhCCCcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHH
Q psy969 5 RKVAFKGSNFRTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIY 72 (106)
Q Consensus 5 ~iai~aGadFKTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~ 72 (106)
+...++|+|+-.-|+....+.. + -.+..++.+..+ . ..+-|=++|||++.+++.+++.
T Consensus 162 ~~l~~~G~~~iivt~i~~~g~~-~---g~~~~~~~~i~~-~-----~~ipvia~GGi~s~~di~~~~~ 219 (254)
T TIGR00735 162 KEVEKLGAGEILLTSMDKDGTK-S---GYDLELTKAVSE-A-----VKIPVIASGGAGKPEHFYEAFT 219 (254)
T ss_pred HHHHHcCCCEEEEeCcCcccCC-C---CCCHHHHHHHHH-h-----CCCCEEEeCCCCCHHHHHHHHH
Confidence 4456779998222344333321 0 113344333322 1 3477889999999999999998
No 185
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=74.03 E-value=11 Score=31.59 Aligned_cols=60 Identities=13% Similarity=0.166 Sum_probs=36.9
Q ss_pred hhHHHhhCCCcccCCC------CCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhh
Q psy969 4 PRKVAFKGSNFRTLHG------RGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIM 77 (106)
Q Consensus 4 ~~iai~aGadFKTSTG------~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~ 77 (106)
++.++++|+|+-+-.| |....+. +.++..+++. .+-.|- +|+|.|.++|+++++
T Consensus 148 a~~l~eAGad~I~ihgrt~~q~~~sg~~~-----p~~l~~~i~~-------~~IPVI---~G~V~t~e~A~~~~~----- 207 (369)
T TIGR01304 148 APIVVKAGADLLVIQGTLVSAEHVSTSGE-----PLNLKEFIGE-------LDVPVI---AGGVNDYTTALHLMR----- 207 (369)
T ss_pred HHHHHHCCCCEEEEeccchhhhccCCCCC-----HHHHHHHHHH-------CCCCEE---EeCCCCHHHHHHHHH-----
Confidence 5788999999933222 2122234 4444433322 233332 389999999999999
Q ss_pred CCCCcc
Q psy969 78 LGPDWL 83 (106)
Q Consensus 78 lGa~w~ 83 (106)
.|++-+
T Consensus 208 aGaDgV 213 (369)
T TIGR01304 208 TGAAGV 213 (369)
T ss_pred cCCCEE
Confidence 699843
No 186
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=73.58 E-value=10 Score=30.53 Aligned_cols=23 Identities=26% Similarity=0.632 Sum_probs=20.3
Q ss_pred eeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969 53 IGLKPAGGISTFEDSVRWIYLVLIMLGPD 81 (106)
Q Consensus 53 vgiKaaGGIrt~~~a~~~i~l~~~~lGa~ 81 (106)
+.|=.-||||+ +++.++++ +|++
T Consensus 84 ~~vqvGGGIR~-e~i~~~l~-----~Ga~ 106 (262)
T PLN02446 84 GGLQVGGGVNS-ENAMSYLD-----AGAS 106 (262)
T ss_pred CCEEEeCCccH-HHHHHHHH-----cCCC
Confidence 67778899996 99999999 7995
No 187
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=73.28 E-value=7.6 Score=29.75 Aligned_cols=25 Identities=28% Similarity=0.256 Sum_probs=21.4
Q ss_pred ceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969 52 KIGLKPAGGISTFEDSVRWIYLVLIMLGPD 81 (106)
Q Consensus 52 ~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~ 81 (106)
.+-|=++|||++++|+.++.+ +|++
T Consensus 184 ~~pvia~GGi~s~ed~~~l~~-----~Ga~ 208 (221)
T TIGR00734 184 EHPVMLGGGISGVEDLELLKE-----MGVS 208 (221)
T ss_pred CCCEEEeCCCCCHHHHHHHHH-----CCCC
Confidence 466889999999999999877 5874
No 188
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=73.27 E-value=11 Score=30.70 Aligned_cols=20 Identities=15% Similarity=0.107 Sum_probs=17.2
Q ss_pred eeEeecCCCCCHHHHHHHHH
Q psy969 53 IGLKPAGGISTFEDSVRWIY 72 (106)
Q Consensus 53 vgiKaaGGIrt~~~a~~~i~ 72 (106)
+-|=+.|+|+|.++|.++|+
T Consensus 276 ipVi~~G~i~~~~~a~~~l~ 295 (337)
T PRK13523 276 IATGAVGLITSGAQAEEILQ 295 (337)
T ss_pred CcEEEeCCCCCHHHHHHHHH
Confidence 44557899999999999998
No 189
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=73.18 E-value=12 Score=30.48 Aligned_cols=58 Identities=17% Similarity=0.123 Sum_probs=39.2
Q ss_pred hhhHHHhhCCCc-ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCC--HHHHHHHHHHHHhhCC
Q psy969 3 RPRKVAFKGSNF-RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGIST--FEDSVRWIYLVLIMLG 79 (106)
Q Consensus 3 ~~~iai~aGadF-KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt--~~~a~~~i~l~~~~lG 79 (106)
++|++.+.|||+ ||. |. -+ ++..+...++ . + +.|=.|||=++ .++++++.+.+.+- |
T Consensus 171 aaRlaaelGADIiK~~--yt---g~-----~e~F~~vv~~-------~-~-vpVviaGG~k~~~~~~~l~~~~~ai~a-G 230 (265)
T COG1830 171 AARLAAELGADIIKTK--YT---GD-----PESFRRVVAA-------C-G-VPVVIAGGPKTETEREFLEMVTAAIEA-G 230 (265)
T ss_pred HHHHHHHhcCCeEeec--CC---CC-----hHHHHHHHHh-------C-C-CCEEEeCCCCCCChHHHHHHHHHHHHc-c
Confidence 578999999999 974 21 11 3344433332 2 3 99999999987 67888887765443 6
Q ss_pred C
Q psy969 80 P 80 (106)
Q Consensus 80 a 80 (106)
+
T Consensus 231 a 231 (265)
T COG1830 231 A 231 (265)
T ss_pred C
Confidence 5
No 190
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=71.41 E-value=12 Score=32.40 Aligned_cols=61 Identities=20% Similarity=0.113 Sum_probs=37.8
Q ss_pred hhhHHHhhCCCc-ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEee-cCCCCCHHHHHHHHHHHHhhCCC
Q psy969 3 RPRKVAFKGSNF-RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKP-AGGISTFEDSVRWIYLVLIMLGP 80 (106)
Q Consensus 3 ~~~iai~aGadF-KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKa-aGGIrt~~~a~~~i~l~~~~lGa 80 (106)
+++..+++|+|+ ---+ +.|-+ ...+..+. .|++ ..+ . +.. +|+|-|.++|+.+++ +|+
T Consensus 252 r~~~l~~ag~d~i~iD~---~~g~~-----~~~~~~i~-~ik~---~~p-~--~~vi~g~v~t~e~a~~a~~-----aGa 311 (505)
T PLN02274 252 RLEHLVKAGVDVVVLDS---SQGDS-----IYQLEMIK-YIKK---TYP-E--LDVIGGNVVTMYQAQNLIQ-----AGV 311 (505)
T ss_pred HHHHHHHcCCCEEEEeC---CCCCc-----HHHHHHHH-HHHH---hCC-C--CcEEEecCCCHHHHHHHHH-----cCc
Confidence 577889999999 3222 12333 33333332 2322 122 2 333 588999999999999 799
Q ss_pred Ccc
Q psy969 81 DWL 83 (106)
Q Consensus 81 ~w~ 83 (106)
|.+
T Consensus 312 D~i 314 (505)
T PLN02274 312 DGL 314 (505)
T ss_pred CEE
Confidence 865
No 191
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=70.85 E-value=13 Score=30.31 Aligned_cols=57 Identities=21% Similarity=0.232 Sum_probs=41.5
Q ss_pred hhHHHhhCCCcccCCCCC-----CCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHH
Q psy969 4 PRKVAFKGSNFRTLHGRG-----PDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYL 73 (106)
Q Consensus 4 ~~iai~aGadFKTSTG~~-----~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l 73 (106)
.+++.++|++.-|-+|.. ...+. -+.|..+++.+ +. +-|=+-|+|+|.++|.++++.
T Consensus 158 a~~~~~~g~~~ltVHgRtr~~~y~~~ad-----~~~I~~vk~~~-------~~-ipvi~NGdI~s~~~a~~~l~~ 219 (323)
T COG0042 158 ARILEDAGADALTVHGRTRAQGYLGPAD-----WDYIKELKEAV-------PS-IPVIANGDIKSLEDAKEMLEY 219 (323)
T ss_pred HHHHHhcCCCEEEEecccHHhcCCCccC-----HHHHHHHHHhC-------CC-CeEEeCCCcCCHHHHHHHHHh
Confidence 456778888886666632 23355 66666666553 33 888899999999999999995
No 192
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=70.47 E-value=11 Score=30.58 Aligned_cols=21 Identities=24% Similarity=0.503 Sum_probs=19.0
Q ss_pred ceeEeecCCCCCHHHHHHHHH
Q psy969 52 KIGLKPAGGISTFEDSVRWIY 72 (106)
Q Consensus 52 ~vgiKaaGGIrt~~~a~~~i~ 72 (106)
++-|=++|||+|++|+.++++
T Consensus 205 ~iPVI~nGgI~s~eda~~~l~ 225 (333)
T PRK11815 205 HLTIEINGGIKTLEEAKEHLQ 225 (333)
T ss_pred CCeEEEECCcCCHHHHHHHHh
Confidence 577888999999999999987
No 193
>PRK12655 fructose-6-phosphate aldolase; Reviewed
Probab=70.21 E-value=19 Score=28.11 Aligned_cols=63 Identities=11% Similarity=0.100 Sum_probs=40.3
Q ss_pred HHHhhCCCc-ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969 6 KVAFKGSNF-RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD 81 (106)
Q Consensus 6 iai~aGadF-KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~ 81 (106)
+|..+||+| --=-|... ..+..-.+.++.|.+.++ ..+.+..|.+|. +|+.+|+.+.+. +|++
T Consensus 119 ~Aa~aGa~yIspyvgR~~---~~g~dg~~~i~~~~~~~~----~~~~~tkILaAS-~r~~~~v~~~~~-----~G~d 182 (220)
T PRK12655 119 LAALAGAKYVAPYVNRVD---AQGGDGIRMVQELQTLLE----MHAPESMVLAAS-FKTPRQALDCLL-----AGCQ 182 (220)
T ss_pred HHHHcCCeEEEeecchHh---HcCCCHHHHHHHHHHHHH----hcCCCcEEEEEe-cCCHHHHHHHHH-----cCCC
Confidence 577889998 54444321 111111334445544443 347789999975 999999999888 7987
No 194
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=70.16 E-value=16 Score=29.70 Aligned_cols=62 Identities=18% Similarity=0.112 Sum_probs=34.9
Q ss_pred hhHHHhhCCCc-ccCCCCCCCCCCCCCCC-chHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHH
Q psy969 4 PRKVAFKGSNF-RTLHGRGPDSTSYGNVC-NTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIY 72 (106)
Q Consensus 4 ~~iai~aGadF-KTSTG~~~~gat~~~~~-~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~ 72 (106)
++...++|+|| -.|.|.......+..+- .+.++.+++. .+.++-|=+.|||+|.+++.++++
T Consensus 241 ~~~L~~~GvD~I~Vs~g~~~~~~~~~~~~~~~~~~~ik~~-------~~~~iPVi~~Ggi~t~e~ae~~l~ 304 (353)
T cd04735 241 VDKLADKGLDYLHISLWDFDRKSRRGRDDNQTIMELVKER-------IAGRLPLIAVGSINTPDDALEALE 304 (353)
T ss_pred HHHHHHcCCCEEEeccCccccccccCCcchHHHHHHHHHH-------hCCCCCEEEECCCCCHHHHHHHHH
Confidence 34566789999 65655321111100000 1122333222 233455668999999999999998
No 195
>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD. NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=70.13 E-value=22 Score=30.45 Aligned_cols=33 Identities=30% Similarity=0.409 Sum_probs=27.6
Q ss_pred ceeEeecCCCCCHHHHHHHHHHHHhhCCCCccCCCcee
Q psy969 52 KIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFR 89 (106)
Q Consensus 52 ~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~w~~~~~~R 89 (106)
++-|=+||||-|.+++.+.+. +|++.+.-++--
T Consensus 219 ~ipViAAGGI~tg~~vaAA~a-----lGAd~V~~GT~f 251 (418)
T cd04742 219 PIRVGAAGGIGTPEAAAAAFA-----LGADFIVTGSIN 251 (418)
T ss_pred CceEEEECCCCCHHHHHHHHH-----cCCcEEeeccHH
Confidence 688999999999999999999 799876555433
No 196
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=69.96 E-value=13 Score=28.43 Aligned_cols=25 Identities=32% Similarity=0.422 Sum_probs=22.2
Q ss_pred ceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969 52 KIGLKPAGGISTFEDSVRWIYLVLIMLGPD 81 (106)
Q Consensus 52 ~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~ 81 (106)
.+-|=++|||+|.+++.++++ +|++
T Consensus 189 ~ipvi~~GGi~s~edi~~l~~-----~G~~ 213 (233)
T cd04723 189 DIPVIAAGGVRSVEDLELLKK-----LGAS 213 (233)
T ss_pred CCCEEEeCCCCCHHHHHHHHH-----cCCC
Confidence 577889999999999999999 6875
No 197
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=69.95 E-value=13 Score=27.72 Aligned_cols=64 Identities=19% Similarity=0.152 Sum_probs=40.4
Q ss_pred hhHHHhhCCCc-ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCCc
Q psy969 4 PRKVAFKGSNF-RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDW 82 (106)
Q Consensus 4 ~~iai~aGadF-KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~w 82 (106)
.+.+.++|||| -......+. .+ .+.+..+.+.+++ . -++....++.|.+++....+ +|++|
T Consensus 81 v~~a~~aGad~I~~d~~~~~~-p~-----~~~~~~~i~~~~~------~-~~i~vi~~v~t~ee~~~a~~-----~G~d~ 142 (221)
T PRK01130 81 VDALAAAGADIIALDATLRPR-PD-----GETLAELVKRIKE------Y-PGQLLMADCSTLEEGLAAQK-----LGFDF 142 (221)
T ss_pred HHHHHHcCCCEEEEeCCCCCC-CC-----CCCHHHHHHHHHh------C-CCCeEEEeCCCHHHHHHHHH-----cCCCE
Confidence 56889999999 654433211 11 1344444444432 1 45666678999999998888 79988
Q ss_pred cCC
Q psy969 83 LNK 85 (106)
Q Consensus 83 ~~~ 85 (106)
+..
T Consensus 143 i~~ 145 (221)
T PRK01130 143 IGT 145 (221)
T ss_pred EEc
Confidence 743
No 198
>KOG2335|consensus
Probab=69.81 E-value=12 Score=31.68 Aligned_cols=57 Identities=19% Similarity=0.247 Sum_probs=44.3
Q ss_pred hhHHHhhCCCcccCCCCC-------CCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHH
Q psy969 4 PRKVAFKGSNFRTLHGRG-------PDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYL 73 (106)
Q Consensus 4 ~~iai~aGadFKTSTG~~-------~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l 73 (106)
+++..++|+++-|-+|.. ...+. .+.++.+++.+ +. +-|=+=|+|.+++|+...++.
T Consensus 161 ak~~e~aG~~~ltVHGRtr~~kg~~~~pad-----~~~i~~v~~~~-------~~-ipviaNGnI~~~~d~~~~~~~ 224 (358)
T KOG2335|consen 161 AKMLEDAGVSLLTVHGRTREQKGLKTGPAD-----WEAIKAVRENV-------PD-IPVIANGNILSLEDVERCLKY 224 (358)
T ss_pred HHHHHhCCCcEEEEecccHHhcCCCCCCcC-----HHHHHHHHHhC-------cC-CcEEeeCCcCcHHHHHHHHHH
Confidence 567889999997788843 34466 67777777664 33 889999999999999999883
No 199
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=69.02 E-value=25 Score=27.00 Aligned_cols=62 Identities=13% Similarity=0.082 Sum_probs=38.1
Q ss_pred hhHHHhhCCCc--ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcC--CceeEeecCCCCCHHHHHHHHHHHHhhCC
Q psy969 4 PRKVAFKGSNF--RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSG--KKIGLKPAGGISTFEDSVRWIYLVLIMLG 79 (106)
Q Consensus 4 ~~iai~aGadF--KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~--~~vgiKaaGGIrt~~~a~~~i~l~~~~lG 79 (106)
++..+++|... -|-+. | .. .+.++.|++ + .+ +++-|= +|.|.|.+|+.+.++ +|
T Consensus 31 ~~al~~~Gi~~iEit~~~--~--~a-----~~~i~~l~~---~----~~~~p~~~vG-aGTV~~~~~~~~a~~-----aG 88 (213)
T PRK06552 31 SLAVIKGGIKAIEVTYTN--P--FA-----SEVIKELVE---L----YKDDPEVLIG-AGTVLDAVTARLAIL-----AG 88 (213)
T ss_pred HHHHHHCCCCEEEEECCC--c--cH-----HHHHHHHHH---H----cCCCCCeEEe-eeeCCCHHHHHHHHH-----cC
Confidence 45666777776 55542 1 11 334444433 2 23 234443 499999999999999 79
Q ss_pred CCcc-CCCc
Q psy969 80 PDWL-NKDL 87 (106)
Q Consensus 80 a~w~-~~~~ 87 (106)
++++ +|+.
T Consensus 89 A~FivsP~~ 97 (213)
T PRK06552 89 AQFIVSPSF 97 (213)
T ss_pred CCEEECCCC
Confidence 9863 5554
No 200
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=68.55 E-value=28 Score=29.08 Aligned_cols=78 Identities=17% Similarity=0.197 Sum_probs=52.2
Q ss_pred hhhHHHhhCCCc---ccCCCCC-----CCC-----CCCCCCCch-HHHHHHHHHHHHhhhcCCc--eeEeecC---CCC-
Q psy969 3 RPRKVAFKGSNF---RTLHGRG-----PDS-----TSYGNVCNT-CGIIMCSAIKHFHKLSGKK--IGLKPAG---GIS- 62 (106)
Q Consensus 3 ~~~iai~aGadF---KTSTG~~-----~~g-----at~~~~~~~-~v~lm~~~i~~~~~~~~~~--vgiKaaG---GIr- 62 (106)
|++.|.+||.|. --++||- .+. --||.. +| -.++.+|.+++.++..+.. |+++.|. +..
T Consensus 154 AA~rA~~AGFDgVEIH~AhGYLi~qFlsp~tN~RtD~YGGS-lENR~Rf~~EVv~aVr~~vg~~~~vg~Rls~~d~~~~~ 232 (363)
T COG1902 154 AARRAKEAGFDGVEIHGAHGYLLSQFLSPLTNKRTDEYGGS-LENRARFLLEVVDAVREAVGADFPVGVRLSPDDFFDGG 232 (363)
T ss_pred HHHHHHHcCCCEEEEeeccchHHHHhcCCccCCCCCccCCc-HHHHHHHHHHHHHHHHHHhCCCceEEEEECccccCCCC
Confidence 678899999998 5666642 111 112211 55 4888888888888888874 9999988 343
Q ss_pred --CHHHHHHHHHHHHhhCC-CCc
Q psy969 63 --TFEDSVRWIYLVLIMLG-PDW 82 (106)
Q Consensus 63 --t~~~a~~~i~l~~~~lG-a~w 82 (106)
+.+++.++.+..++ +| .++
T Consensus 233 g~~~~e~~~la~~L~~-~G~~d~ 254 (363)
T COG1902 233 GLTIEEAVELAKALEE-AGLVDY 254 (363)
T ss_pred CCCHHHHHHHHHHHHh-cCCccE
Confidence 67788888776544 45 454
No 201
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=68.22 E-value=25 Score=26.07 Aligned_cols=25 Identities=28% Similarity=0.411 Sum_probs=21.1
Q ss_pred ceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969 52 KIGLKPAGGISTFEDSVRWIYLVLIMLGPD 81 (106)
Q Consensus 52 ~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~ 81 (106)
++-|=++|||++.+++.++++ .|++
T Consensus 190 ~ipvi~~GGi~~~~di~~~~~-----~Ga~ 214 (234)
T cd04732 190 GIPVIASGGVSSLDDIKALKE-----LGVA 214 (234)
T ss_pred CCCEEEecCCCCHHHHHHHHH-----CCCC
Confidence 466778999999999999998 5774
No 202
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=67.69 E-value=13 Score=32.67 Aligned_cols=25 Identities=32% Similarity=0.521 Sum_probs=21.0
Q ss_pred ceeEeecCCCCCH-----------HHHHHHHHHHHhhCCCC
Q psy969 52 KIGLKPAGGISTF-----------EDSVRWIYLVLIMLGPD 81 (106)
Q Consensus 52 ~vgiKaaGGIrt~-----------~~a~~~i~l~~~~lGa~ 81 (106)
.+-|=+-|||||. |++.+|++ +|++
T Consensus 314 ~ip~~vGGGIr~~~d~~~~~~~~~e~~~~~l~-----~Gad 349 (538)
T PLN02617 314 FVPLTVGGGIRDFTDANGRYYSSLEVASEYFR-----SGAD 349 (538)
T ss_pred CCCEEEcCCccccccccccccchHHHHHHHHH-----cCCC
Confidence 3667778999997 77999999 7996
No 203
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=67.64 E-value=13 Score=30.55 Aligned_cols=47 Identities=13% Similarity=-0.125 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCCccCC
Q psy969 34 CGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNK 85 (106)
Q Consensus 34 ~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~w~~~ 85 (106)
+..-+++.+++..+.++.+|.||..|.-.+.++|..+.+ +|++.++-
T Consensus 170 ~f~~~le~i~~i~~~~~vPVivK~~g~g~s~~~a~~l~~-----~Gvd~I~V 216 (352)
T PRK05437 170 DFRGWLDNIAEIVSALPVPVIVKEVGFGISKETAKRLAD-----AGVKAIDV 216 (352)
T ss_pred cHHHHHHHHHHHHHhhCCCEEEEeCCCCCcHHHHHHHHH-----cCCCEEEE
Confidence 344455666666666678999999988788999999998 69987654
No 204
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=67.61 E-value=23 Score=27.27 Aligned_cols=62 Identities=13% Similarity=0.103 Sum_probs=39.2
Q ss_pred hhHHHhhCCCc--ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969 4 PRKVAFKGSNF--RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD 81 (106)
Q Consensus 4 ~~iai~aGadF--KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~ 81 (106)
++.+.++|.+. -| +..+ .. .+.++.|++ +| + ++-|= +|.|-|.+|+...++ +|++
T Consensus 33 ~~al~~~Gi~~iEit---l~~~-~~-----~~~I~~l~~---~~----p-~~~IG-AGTVl~~~~a~~a~~-----aGA~ 89 (212)
T PRK05718 33 AKALVAGGLPVLEVT---LRTP-AA-----LEAIRLIAK---EV----P-EALIG-AGTVLNPEQLAQAIE-----AGAQ 89 (212)
T ss_pred HHHHHHcCCCEEEEe---cCCc-cH-----HHHHHHHHH---HC----C-CCEEE-EeeccCHHHHHHHHH-----cCCC
Confidence 45677788888 66 3211 12 334444443 22 3 44343 599999999999999 7999
Q ss_pred cc-CCCce
Q psy969 82 WL-NKDLF 88 (106)
Q Consensus 82 w~-~~~~~ 88 (106)
|+ +|+..
T Consensus 90 FivsP~~~ 97 (212)
T PRK05718 90 FIVSPGLT 97 (212)
T ss_pred EEECCCCC
Confidence 74 66544
No 205
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=67.51 E-value=27 Score=28.53 Aligned_cols=63 Identities=19% Similarity=0.135 Sum_probs=40.5
Q ss_pred hhHHHhhCCCcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969 4 PRKVAFKGSNFRTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD 81 (106)
Q Consensus 4 ~~iai~aGadFKTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~ 81 (106)
|+-..++|+.--=+=| +|.|..-|=..+..+++|++. .++-|=.-+||.+.+||.+.++ +|+|
T Consensus 151 a~rLed~Gc~aVMPlg-sPIGSg~Gl~n~~~l~~i~e~---------~~vpVivdAGIgt~sDa~~AmE-----lGaD 213 (267)
T CHL00162 151 AKHLEDIGCATVMPLG-SPIGSGQGLQNLLNLQIIIEN---------AKIPVIIDAGIGTPSEASQAME-----LGAS 213 (267)
T ss_pred HHHHHHcCCeEEeecc-CcccCCCCCCCHHHHHHHHHc---------CCCcEEEeCCcCCHHHHHHHHH-----cCCC
Confidence 3444555555411222 233332222237789998864 4477777789999999999999 7997
No 206
>PF09043 Lys-AminoMut_A: D-Lysine 5,6-aminomutase alpha subunit; InterPro: IPR015130 This domain is found in proteins involved in the 1,2 rearrangement of the terminal amino group of DL-lysine and of L-beta-lysine, using adenosylcobalamin (AdoCbl) and pyridoxal-5'-phosphate as cofactors. The structure is predominantly a PLP-binding TIM barrel domain, with several additional alpha-helices and beta-strands at the N and C termini. These helices and strands form an intertwined accessory clamp structure that wraps around the sides of the TIM barrel and extends up toward the Ado ligand of the Cbl cofactor, providing most of the interactions observed between the protein and the Ado ligand of the Cbl, suggesting that its role is mainly in stabilising AdoCbl in the precatalytic resting state. ; PDB: 3KP1_A 3KOW_A 3KOZ_A 3KOY_B 3KOX_A 3KP0_C 1XRS_A.
Probab=67.48 E-value=8.4 Score=33.88 Aligned_cols=51 Identities=22% Similarity=0.173 Sum_probs=31.3
Q ss_pred ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEee-cCCCCCHHHHHHH
Q psy969 15 RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKP-AGGISTFEDSVRW 70 (106)
Q Consensus 15 KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKa-aGGIrt~~~a~~~ 70 (106)
-|.-||+...+| -+.+++|++++.+..+.+++.|-+-- +-|+--+|-|.-.
T Consensus 194 aT~eG~GGt~aT-----qenfR~mRkALD~v~~EvGRyI~l~nY~SGlcmPEIA~m~ 245 (509)
T PF09043_consen 194 ATTEGFGGTYAT-----QENFRIMRKALDEVEEEVGRYIRLHNYCSGLCMPEIAAMG 245 (509)
T ss_dssp --S--TTSB--B-----HHHHHHHHHHHHHHHHHHTS--EEEEE--STTHHHHHHHH
T ss_pred CCCCCcCCchhh-----HHHHHHHHHHHHHHHHHhCCeeeeeccccccccHHHHHHH
Confidence 467777777788 88999999999988888888777642 3356666665443
No 207
>PLN02363 phosphoribosylanthranilate isomerase
Probab=67.44 E-value=8 Score=30.71 Aligned_cols=27 Identities=22% Similarity=0.309 Sum_probs=22.7
Q ss_pred CCceeEeecCCCCCHHHHHHHHHHHHhhCCCCc
Q psy969 50 GKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDW 82 (106)
Q Consensus 50 ~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~w 82 (106)
+.+..||.- ||++.+||+...+ +|+||
T Consensus 44 ~~~~~VKIC-Git~~eda~~a~~-----~GaD~ 70 (256)
T PLN02363 44 KDRPLVKMC-GITSARDAAMAVE-----AGADF 70 (256)
T ss_pred CCCceEEEC-CCCcHHHHHHHHH-----cCCCE
Confidence 456789995 6999999999999 68875
No 208
>cd00516 PRTase_typeII Phosphoribosyltransferase (PRTase) type II; This family contains two enzymes that play an important role in NAD production by either allowing quinolinic acid (QA) , quinolinate phosphoribosyl transferase (QAPRTase), or nicotinic acid (NA), nicotinate phosphoribosyltransferase (NAPRTase), to be used in the synthesis of NAD. QAPRTase catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide, an important step in the de novo synthesis of NAD. NAPRTase catalyses a similar reaction leading to NAMN and pyrophosphate, using nicotinic acid an PPRP as substrates, used in the NAD salvage pathway.
Probab=67.12 E-value=21 Score=27.67 Aligned_cols=46 Identities=22% Similarity=0.362 Sum_probs=32.2
Q ss_pred HHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCCccCCCceeEeccchH
Q psy969 38 MCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGASSLL 96 (106)
Q Consensus 38 m~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~w~~~~~~RiGtSs~~ 96 (106)
+.+.++++.....+++.|=+||||. .+...+|.+ .|.+ .||+++..
T Consensus 225 ~~~~~~~~~~~~~~~~~i~~Sggi~-~~~i~~~~~-----~gvd-------~~gvG~~~ 270 (281)
T cd00516 225 ILKARAHLDGKGLPRVKIEASGGLD-EENIRAYAE-----TGVD-------VFGVGTLL 270 (281)
T ss_pred HHHHHHhhhhcCCCceEEEEeCCCC-HHHHHHHHH-----cCCC-------EEEeCccc
Confidence 3344433333344689999999997 888888887 6875 88887654
No 209
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=67.11 E-value=28 Score=26.07 Aligned_cols=24 Identities=38% Similarity=0.700 Sum_probs=20.1
Q ss_pred eeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969 53 IGLKPAGGISTFEDSVRWIYLVLIMLGPD 81 (106)
Q Consensus 53 vgiKaaGGIrt~~~a~~~i~l~~~~lGa~ 81 (106)
+-|=+.||||+++++.++++ +|++
T Consensus 75 ~pv~~~ggi~~~~d~~~~~~-----~G~~ 98 (232)
T TIGR03572 75 MPLTVGGGIRSLEDAKKLLS-----LGAD 98 (232)
T ss_pred CCEEEECCCCCHHHHHHHHH-----cCCC
Confidence 44567999999999999988 6875
No 210
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=65.55 E-value=22 Score=28.32 Aligned_cols=65 Identities=15% Similarity=0.079 Sum_probs=39.8
Q ss_pred hHHHhhCCCc--ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeec-CCCCCHHHHHHHHHHHHhhCCCC
Q psy969 5 RKVAFKGSNF--RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPA-GGISTFEDSVRWIYLVLIMLGPD 81 (106)
Q Consensus 5 ~iai~aGadF--KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaa-GGIrt~~~a~~~i~l~~~~lGa~ 81 (106)
+.+.++|++. -......+-... ++...-+...+ ++.+ ++.| +||+|.+|+..+... +
T Consensus 165 ~~a~~~ga~iiGINnRdL~t~~vd-----~~~~~~L~~~i-------p~~~-~~IsESGI~t~~d~~~l~~~------~- 224 (247)
T PRK13957 165 KLALDCGAEIIGINTRDLDTFQIH-----QNLVEEVAAFL-------PPNI-VKVGESGIESRSDLDKFRKL------V- 224 (247)
T ss_pred HHHHhCCCCEEEEeCCCCccceEC-----HHHHHHHHhhC-------CCCc-EEEEcCCCCCHHHHHHHHHh------C-
Confidence 3567778877 444444333344 44444444443 4443 3444 899999999998762 3
Q ss_pred ccCCCceeEecc
Q psy969 82 WLNKDLFRIGAS 93 (106)
Q Consensus 82 w~~~~~~RiGtS 93 (106)
+.+-||+|
T Consensus 225 ----davLvG~~ 232 (247)
T PRK13957 225 ----DAALIGTY 232 (247)
T ss_pred ----CEEEECHH
Confidence 35889986
No 211
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=65.41 E-value=21 Score=30.11 Aligned_cols=60 Identities=25% Similarity=0.259 Sum_probs=36.5
Q ss_pred hhhHHHhhCCCc--ccC-CCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCC
Q psy969 3 RPRKVAFKGSNF--RTL-HGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLG 79 (106)
Q Consensus 3 ~~~iai~aGadF--KTS-TG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lG 79 (106)
+++..+++|+|+ -++ .|. + ....+.+ +.|+ +.. +++-|=+ |.|-|.++|..+++ +|
T Consensus 228 r~~~L~~aG~d~I~vd~a~g~-----~-----~~~~~~i-~~i~---~~~-~~~~vi~-G~v~t~~~a~~l~~-----aG 286 (450)
T TIGR01302 228 RAEALVKAGVDVIVIDSSHGH-----S-----IYVIDSI-KEIK---KTY-PDLDIIA-GNVATAEQAKALID-----AG 286 (450)
T ss_pred HHHHHHHhCCCEEEEECCCCc-----H-----hHHHHHH-HHHH---HhC-CCCCEEE-EeCCCHHHHHHHHH-----hC
Confidence 456788999999 444 332 2 2122222 2222 222 2333333 99999999999999 79
Q ss_pred CCcc
Q psy969 80 PDWL 83 (106)
Q Consensus 80 a~w~ 83 (106)
++.+
T Consensus 287 ad~i 290 (450)
T TIGR01302 287 ADGL 290 (450)
T ss_pred CCEE
Confidence 9875
No 212
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=65.15 E-value=13 Score=27.34 Aligned_cols=52 Identities=17% Similarity=0.236 Sum_probs=33.5
Q ss_pred hhHHHhhCCCc-ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCCc
Q psy969 4 PRKVAFKGSNF-RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDW 82 (106)
Q Consensus 4 ~~iai~aGadF-KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~w 82 (106)
.+.++++|+|| -++ +.+ ++ +.. ..++ .+++.-=|+.|++|+.+.++ +|+|+
T Consensus 69 ~~~a~~~Ga~~i~~p------~~~-----~~-~~~---~~~~--------~~~~~i~gv~t~~e~~~A~~-----~Gad~ 120 (190)
T cd00452 69 ADAAIAAGAQFIVSP------GLD-----PE-VVK---AANR--------AGIPLLPGVATPTEIMQALE-----LGADI 120 (190)
T ss_pred HHHHHHcCCCEEEcC------CCC-----HH-HHH---HHHH--------cCCcEECCcCCHHHHHHHHH-----CCCCE
Confidence 56789999999 743 122 22 222 1111 23343348999999999998 79998
Q ss_pred c
Q psy969 83 L 83 (106)
Q Consensus 83 ~ 83 (106)
+
T Consensus 121 i 121 (190)
T cd00452 121 V 121 (190)
T ss_pred E
Confidence 6
No 213
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=65.03 E-value=29 Score=28.21 Aligned_cols=51 Identities=14% Similarity=0.137 Sum_probs=34.5
Q ss_pred chHHHHHHHHHHHHhhhcCCceeEeecCCCCC---HHHHHHHHHHHHhhCCCCcc
Q psy969 32 NTCGIIMCSAIKHFHKLSGKKIGLKPAGGIST---FEDSVRWIYLVLIMLGPDWL 83 (106)
Q Consensus 32 ~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt---~~~a~~~i~l~~~~lGa~w~ 83 (106)
+.+-+++.+.++..++..+.+|-||.--|+.+ ++++.+++..+++ .|++++
T Consensus 105 l~~p~~~~~iv~av~~~~~~PVsvKiR~g~~~~~~~~~~~~~~~~l~~-~G~~~i 158 (318)
T TIGR00742 105 MGNADLVADCVKAMQEAVNIPVTVKHRIGIDPLDSYEFLCDFVEIVSG-KGCQNF 158 (318)
T ss_pred hcCHHHHHHHHHHHHHHhCCCeEEEEecCCCCcchHHHHHHHHHHHHH-cCCCEE
Confidence 44555556666666566677899999888764 4566666665543 788875
No 214
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=64.81 E-value=30 Score=28.75 Aligned_cols=68 Identities=15% Similarity=0.091 Sum_probs=40.8
Q ss_pred hHHHhhCCCc-ccCCCCCC---CCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCC
Q psy969 5 RKVAFKGSNF-RTLHGRGP---DSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGP 80 (106)
Q Consensus 5 ~iai~aGadF-KTSTG~~~---~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa 80 (106)
..|...|+|| .-|.=|.+ ++.+ +--...+....+ .-++-|=|-|||. .+++.+++. +|+
T Consensus 254 ~~A~~~GaDYI~lGPvf~T~tKp~~~-----~~Gle~l~~~~~------~~~iPv~AiGGI~-~~ni~~l~~-----~Ga 316 (347)
T PRK02615 254 AKAIAEGADYIGVGPVFPTPTKPGKA-----PAGLEYLKYAAK------EAPIPWFAIGGID-KSNIPEVLQ-----AGA 316 (347)
T ss_pred HHHHHcCCCEEEECCCcCCCCCCCCC-----CCCHHHHHHHHH------hCCCCEEEECCCC-HHHHHHHHH-----cCC
Confidence 3566789999 65554432 1111 222333333222 1246677889995 888888888 688
Q ss_pred CccCCCceeEeccchH
Q psy969 81 DWLNKDLFRIGASSLL 96 (106)
Q Consensus 81 ~w~~~~~~RiGtSs~~ 96 (106)
+ +|..++.+
T Consensus 317 ~-------gVAvisaI 325 (347)
T PRK02615 317 K-------RVAVVRAI 325 (347)
T ss_pred c-------EEEEeHHH
Confidence 5 77776654
No 215
>PRK12656 fructose-6-phosphate aldolase; Reviewed
Probab=64.67 E-value=41 Score=26.29 Aligned_cols=64 Identities=13% Similarity=0.081 Sum_probs=41.8
Q ss_pred hHHHhhCCCc-ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969 5 RKVAFKGSNF-RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD 81 (106)
Q Consensus 5 ~iai~aGadF-KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~ 81 (106)
.+|.++||+| --=-|.-.. ...++ .+.++.|++.++. .+.+..|.+|- +|+.+|+.+... +|++
T Consensus 120 ~~Aa~aGa~yvsPyvgRi~d--~g~D~-~~~i~~i~~~~~~----~~~~tkILaAS-~r~~~~v~~a~~-----~G~d 184 (222)
T PRK12656 120 LLAIEAGADYLAPYYNRMEN--LNIDS-NAVIGQLAEAIDR----ENSDSKILAAS-FKNVAQVNKAFA-----LGAQ 184 (222)
T ss_pred HHHHHCCCCEEecccchhhh--cCCCH-HHHHHHHHHHHHh----cCCCCEEEEEe-cCCHHHHHHHHH-----cCCC
Confidence 4788899999 433343211 10111 3345555555543 46789999975 999999999998 7997
No 216
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.
Probab=64.26 E-value=21 Score=29.00 Aligned_cols=47 Identities=11% Similarity=-0.158 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCCccCCC
Q psy969 35 GIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKD 86 (106)
Q Consensus 35 v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~w~~~~ 86 (106)
.+-.++.+++..+..+-+|.||-.|.-.+.+.|..+.+ +|+++++-.
T Consensus 164 f~~~le~i~~i~~~~~vPVivK~~g~g~~~~~a~~L~~-----aGvd~I~Vs 210 (333)
T TIGR02151 164 FKGWLEKIAEICSQLSVPVIVKEVGFGISKEVAKLLAD-----AGVSAIDVA 210 (333)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEecCCCCCHHHHHHHHH-----cCCCEEEEC
Confidence 34344555555555678999999887788999999998 799876543
No 217
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=64.26 E-value=33 Score=26.64 Aligned_cols=51 Identities=20% Similarity=0.095 Sum_probs=34.4
Q ss_pred chHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCCccCCCceeEec
Q psy969 32 NTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGA 92 (106)
Q Consensus 32 ~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~w~~~~~~RiGt 92 (106)
.+.++.+++.++ ..+..+.|=+.|||+ .+.+..+.+ +|++++=.|..-++.
T Consensus 155 l~KI~~l~~~~~----~~~~~~~IeVDGGI~-~eti~~l~~-----aGaDi~V~GSaiF~~ 205 (223)
T PRK08745 155 LDKLRAIRKKID----ALGKPIRLEIDGGVK-ADNIGAIAA-----AGADTFVAGSAIFNA 205 (223)
T ss_pred HHHHHHHHHHHH----hcCCCeeEEEECCCC-HHHHHHHHH-----cCCCEEEEChhhhCC
Confidence 445555554443 234468899999998 788888888 799865555555554
No 218
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=63.83 E-value=26 Score=27.72 Aligned_cols=78 Identities=24% Similarity=0.309 Sum_probs=49.2
Q ss_pred hhHHHhhCCCcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCCcc
Q psy969 4 PRKVAFKGSNFRTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWL 83 (106)
Q Consensus 4 ~~iai~aGadFKTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~w~ 83 (106)
+++|.++||||-|-.|=. ++..|.++++.- +..+..+.+=.- |++|++++.++++. +|.+.+
T Consensus 73 ~~ma~~aGAd~~tV~g~A------------~~~TI~~~i~~A-~~~~~~v~iDl~-~~~~~~~~~~~l~~----~gvd~~ 134 (217)
T COG0269 73 ARMAFEAGADWVTVLGAA------------DDATIKKAIKVA-KEYGKEVQIDLI-GVWDPEQRAKWLKE----LGVDQV 134 (217)
T ss_pred HHHHHHcCCCEEEEEecC------------CHHHHHHHHHHH-HHcCCeEEEEee-cCCCHHHHHHHHHH----hCCCEE
Confidence 578999999997777632 333334444322 223677777775 59999999999984 577653
Q ss_pred ----CCCceeEeccchHHHH
Q psy969 84 ----NKDLFRIGASSLLNNI 99 (106)
Q Consensus 84 ----~~~~~RiGtSs~~~~l 99 (106)
.-+.-..|.|.+..+|
T Consensus 135 ~~H~g~D~q~~G~~~~~~~l 154 (217)
T COG0269 135 ILHRGRDAQAAGKSWGEDDL 154 (217)
T ss_pred EEEecccHhhcCCCccHHHH
Confidence 2233335666554433
No 219
>PRK08662 nicotinate phosphoribosyltransferase; Reviewed
Probab=63.75 E-value=23 Score=29.23 Aligned_cols=21 Identities=14% Similarity=0.142 Sum_probs=19.0
Q ss_pred CceeEeecCCCCCHHHHHHHHH
Q psy969 51 KKIGLKPAGGISTFEDSVRWIY 72 (106)
Q Consensus 51 ~~vgiKaaGGIrt~~~a~~~i~ 72 (106)
+++.|=+|||| |.+.+.+|.+
T Consensus 260 ~~v~IeaSGgI-~~~ni~~ya~ 280 (343)
T PRK08662 260 EHVKIFVSGGL-DPERIRELRD 280 (343)
T ss_pred CCeEEEEeCCC-CHHHHHHHHH
Confidence 56899999999 8999999987
No 220
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=63.62 E-value=24 Score=27.12 Aligned_cols=21 Identities=19% Similarity=0.321 Sum_probs=18.4
Q ss_pred ceeEeecCCCCCHHHHHHHHH
Q psy969 52 KIGLKPAGGISTFEDSVRWIY 72 (106)
Q Consensus 52 ~vgiKaaGGIrt~~~a~~~i~ 72 (106)
.+-|=++|||+|++|+.++.+
T Consensus 190 ~ipviasGGi~s~~D~~~l~~ 210 (241)
T PRK14024 190 DAPVVASGGVSSLDDLRALAE 210 (241)
T ss_pred CCCEEEeCCCCCHHHHHHHhh
Confidence 467888999999999999875
No 221
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=63.46 E-value=42 Score=26.65 Aligned_cols=30 Identities=10% Similarity=0.233 Sum_probs=20.3
Q ss_pred ceeEeecCCCCCHHHHHHHHHHHHhhCCCCcc
Q psy969 52 KIGLKPAGGISTFEDSVRWIYLVLIMLGPDWL 83 (106)
Q Consensus 52 ~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~w~ 83 (106)
.+.|.+-+|- |.++|+++++..++ ++.+|+
T Consensus 191 ~l~vDaN~~~-~~~~a~~~~~~l~~-~~i~~i 220 (357)
T cd03316 191 DLMVDANGRW-DLAEAIRLARALEE-YDLFWF 220 (357)
T ss_pred EEEEECCCCC-CHHHHHHHHHHhCc-cCCCeE
Confidence 5777776654 67788877776544 466776
No 222
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=63.44 E-value=16 Score=27.23 Aligned_cols=63 Identities=17% Similarity=0.106 Sum_probs=37.1
Q ss_pred hhHHHhhCCCc-ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCCc
Q psy969 4 PRKVAFKGSNF-RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDW 82 (106)
Q Consensus 4 ~~iai~aGadF-KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~w 82 (106)
.+.++++|||| -+-....+... .+.+..+.+.++++ + .+...-++.|.+++....+ +|++|
T Consensus 85 ~~~a~~aGad~I~~~~~~~~~p~------~~~~~~~i~~~~~~----g---~~~iiv~v~t~~ea~~a~~-----~G~d~ 146 (219)
T cd04729 85 VDALAAAGADIIALDATDRPRPD------GETLAELIKRIHEE----Y---NCLLMADISTLEEALNAAK-----LGFDI 146 (219)
T ss_pred HHHHHHcCCCEEEEeCCCCCCCC------CcCHHHHHHHHHHH----h---CCeEEEECCCHHHHHHHHH-----cCCCE
Confidence 47889999999 65432221111 11333333333322 2 2343447899999988888 79998
Q ss_pred cC
Q psy969 83 LN 84 (106)
Q Consensus 83 ~~ 84 (106)
+.
T Consensus 147 i~ 148 (219)
T cd04729 147 IG 148 (219)
T ss_pred EE
Confidence 73
No 223
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=63.35 E-value=8.4 Score=30.68 Aligned_cols=67 Identities=16% Similarity=0.123 Sum_probs=39.3
Q ss_pred hHHHhhCCCc--ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCCc
Q psy969 5 RKVAFKGSNF--RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDW 82 (106)
Q Consensus 5 ~iai~aGadF--KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~w 82 (106)
+.|.++|++. -.+--..+-... ++...-+... .+..+-+=+.+||+|.+|+..+.. .|++
T Consensus 172 ~~al~~~a~iiGINnRdL~tf~vd-----~~~~~~l~~~-------ip~~~~~iseSGI~~~~d~~~l~~-----~G~d- 233 (254)
T PF00218_consen 172 ERALEAGADIIGINNRDLKTFEVD-----LNRTEELAPL-------IPKDVIVISESGIKTPEDARRLAR-----AGAD- 233 (254)
T ss_dssp HHHHHTT-SEEEEESBCTTTCCBH-----THHHHHHHCH-------SHTTSEEEEESS-SSHHHHHHHCT-----TT-S-
T ss_pred HHHHHcCCCEEEEeCccccCcccC-----hHHHHHHHhh-------CccceeEEeecCCCCHHHHHHHHH-----CCCC-
Confidence 3456677776 444333322233 3444444333 344555556678999999999998 6874
Q ss_pred cCCCceeEecc
Q psy969 83 LNKDLFRIGAS 93 (106)
Q Consensus 83 ~~~~~~RiGtS 93 (106)
.+-||++
T Consensus 234 ----avLVGe~ 240 (254)
T PF00218_consen 234 ----AVLVGEA 240 (254)
T ss_dssp ----EEEESHH
T ss_pred ----EEEECHH
Confidence 7888986
No 224
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=63.32 E-value=16 Score=29.69 Aligned_cols=52 Identities=15% Similarity=0.130 Sum_probs=34.3
Q ss_pred chHHHHHHHHHHHHhhhcCCceeEeecCCCCC---HHHHHHHHHHHHhhCCCCccC
Q psy969 32 NTCGIIMCSAIKHFHKLSGKKIGLKPAGGIST---FEDSVRWIYLVLIMLGPDWLN 84 (106)
Q Consensus 32 ~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt---~~~a~~~i~l~~~~lGa~w~~ 84 (106)
..+-+++.+.++.+++..+-.+.+|...|+.. .+++.+++...+ -.|+++++
T Consensus 115 ~~~p~~~~eiv~avr~~v~~pVsvKiR~g~~~~~t~~~~~~~~~~l~-~aG~d~i~ 169 (333)
T PRK11815 115 MAEPELVADCVKAMKDAVSIPVTVKHRIGIDDQDSYEFLCDFVDTVA-EAGCDTFI 169 (333)
T ss_pred hcCHHHHHHHHHHHHHHcCCceEEEEEeeeCCCcCHHHHHHHHHHHH-HhCCCEEE
Confidence 44566777777777666778899998777654 455555555432 26888763
No 225
>PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside []. It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A ....
Probab=63.29 E-value=20 Score=29.00 Aligned_cols=71 Identities=20% Similarity=0.306 Sum_probs=44.8
Q ss_pred hhhHHHhhCCCc---ccCCCCC------CC----CCCCCCCCchH-HHHHHHHHHHHhhhcCCc--eeEeecC-----CC
Q psy969 3 RPRKVAFKGSNF---RTLHGRG------PD----STSYGNVCNTC-GIIMCSAIKHFHKLSGKK--IGLKPAG-----GI 61 (106)
Q Consensus 3 ~~~iai~aGadF---KTSTG~~------~~----gat~~~~~~~~-v~lm~~~i~~~~~~~~~~--vgiKaaG-----GI 61 (106)
+++.|.+||.|. --..||- |. .--||. .+|. .+++++.|++.++.+++. |+||.|+ |-
T Consensus 154 AA~~A~~AGfDGVEIH~ahGyLl~qFLSp~~N~RtDeYGG-s~ENR~Rf~~Eii~aIr~~vg~d~~v~~Rls~~~~~~~g 232 (341)
T PF00724_consen 154 AARRAKEAGFDGVEIHAAHGYLLSQFLSPLTNRRTDEYGG-SLENRARFLLEIIEAIREAVGPDFPVGVRLSPDDFVEGG 232 (341)
T ss_dssp HHHHHHHTT-SEEEEEESTTSHHHHHHSTTT---SSTTSS-SHHHHHHHHHHHHHHHHHHHTGGGEEEEEEETTCSSTTS
T ss_pred HHHHHHHhccCeEeecccchhhhhheeeeccCCCchhhhh-hhchhhHHHHHHHHHHHHHhcCCceEEEEEeeecccCCC
Confidence 578899999999 5677763 11 111221 1554 888888888888888775 7999986 22
Q ss_pred CCHHHHHHHHHHH
Q psy969 62 STFEDSVRWIYLV 74 (106)
Q Consensus 62 rt~~~a~~~i~l~ 74 (106)
.+.++..++.++.
T Consensus 233 ~~~~e~~~~~~~~ 245 (341)
T PF00724_consen 233 ITLEETIEIAKLL 245 (341)
T ss_dssp HHSHHHHHHHHHH
T ss_pred CchHHHHHHHHHH
Confidence 3456665554443
No 226
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=63.25 E-value=16 Score=28.18 Aligned_cols=63 Identities=17% Similarity=0.193 Sum_probs=40.0
Q ss_pred HHHhhCCCc-ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCCccC
Q psy969 6 KVAFKGSNF-RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLN 84 (106)
Q Consensus 6 iai~aGadF-KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~w~~ 84 (106)
.|.++|+|+ |- .|.+.- +. +.-++-++.- . +.+.+=+.|||.. +.+.+|++ +|+
T Consensus 116 ~A~~~Ga~~vKl----FPA~~~-GG--~~yikal~~p-------l-p~i~~~ptGGV~~-~N~~~~l~-----aGa---- 170 (204)
T TIGR01182 116 LALELGITALKL----FPAEVS-GG--VKMLKALAGP-------F-PQVRFCPTGGINL-ANVRDYLA-----APN---- 170 (204)
T ss_pred HHHHCCCCEEEE----CCchhc-CC--HHHHHHHhcc-------C-CCCcEEecCCCCH-HHHHHHHh-----CCC----
Confidence 578899999 83 332211 00 1234444322 2 5688899999977 89999999 688
Q ss_pred CCceeEeccchH
Q psy969 85 KDLFRIGASSLL 96 (106)
Q Consensus 85 ~~~~RiGtSs~~ 96 (106)
.-+|.+|-+
T Consensus 171 ---~~vg~Gs~L 179 (204)
T TIGR01182 171 ---VACGGGSWL 179 (204)
T ss_pred ---EEEEEChhh
Confidence 466665544
No 227
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=62.02 E-value=13 Score=28.29 Aligned_cols=43 Identities=23% Similarity=0.169 Sum_probs=29.2
Q ss_pred eEeecCCCCCHHHHHHHHHHHHhhCCCCcc----CCCceeEeccchHHHHHHH
Q psy969 54 GLKPAGGISTFEDSVRWIYLVLIMLGPDWL----NKDLFRIGASSLLNNILQE 102 (106)
Q Consensus 54 giKaaGGIrt~~~a~~~i~l~~~~lGa~w~----~~~~~RiGtSs~~~~l~~~ 102 (106)
.||.. ||++.+||+...+ +|++++ .|..-|.=+......|.+.
T Consensus 4 ~vKIC-Gi~~~eda~~~~~-----~Gad~iGfI~~~~S~R~V~~~~a~~i~~~ 50 (210)
T PRK01222 4 RVKIC-GITTPEDAEAAAE-----LGADAIGFVFYPKSPRYVSPEQAAELAAA 50 (210)
T ss_pred eEEEC-CCCcHHHHHHHHH-----cCCCEEEEccCCCCCCcCCHHHHHHHHHh
Confidence 58985 6999999999999 677753 4666665444444444443
No 228
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=61.93 E-value=8 Score=29.82 Aligned_cols=25 Identities=28% Similarity=0.323 Sum_probs=21.3
Q ss_pred ceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969 52 KIGLKPAGGISTFEDSVRWIYLVLIMLGPD 81 (106)
Q Consensus 52 ~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~ 81 (106)
++-|=+||||++++|..++.+ +|++
T Consensus 182 ~~pviasGGv~~~~Dl~~l~~-----~g~~ 206 (228)
T PRK04128 182 DEEFIYAGGVSSAEDVKKLAE-----IGFS 206 (228)
T ss_pred CCCEEEECCCCCHHHHHHHHH-----CCCC
Confidence 577889999999999999988 5764
No 229
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=61.92 E-value=20 Score=30.47 Aligned_cols=20 Identities=30% Similarity=0.375 Sum_probs=18.8
Q ss_pred CCCCCHHHHHHHHHHHHhhCCCCcc
Q psy969 59 GGISTFEDSVRWIYLVLIMLGPDWL 83 (106)
Q Consensus 59 GGIrt~~~a~~~i~l~~~~lGa~w~ 83 (106)
|+|-|.++|+++++ +|++++
T Consensus 275 g~v~t~e~a~~l~~-----aGad~i 294 (486)
T PRK05567 275 GNVATAEAARALIE-----AGADAV 294 (486)
T ss_pred eccCCHHHHHHHHH-----cCCCEE
Confidence 99999999999999 799976
No 230
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=61.75 E-value=19 Score=30.32 Aligned_cols=69 Identities=19% Similarity=0.209 Sum_probs=41.6
Q ss_pred hhHHHhhCCCc-ccCCCCCCCCCCC-----CCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhh
Q psy969 4 PRKVAFKGSNF-RTLHGRGPDSTSY-----GNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIM 77 (106)
Q Consensus 4 ~~iai~aGadF-KTSTG~~~~gat~-----~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~ 77 (106)
++-.+++|||. |-.-|=+..-+|- |-|=+.+|..-.++.+ +..+-|=+-||||+.-|...-+.
T Consensus 165 a~~Li~aGAD~vKVGIGpGSiCtTr~vtGvG~PQltAV~~~a~~a~------~~gvpiIADGGi~~sGDI~KAla----- 233 (346)
T PRK05096 165 VEELILSGADIVKVGIGPGSVCTTRVKTGVGYPQLSAVIECADAAH------GLGGQIVSDGGCTVPGDVAKAFG----- 233 (346)
T ss_pred HHHHHHcCCCEEEEcccCCccccCccccccChhHHHHHHHHHHHHH------HcCCCEEecCCcccccHHHHHHH-----
Confidence 45678899999 9655532222221 1111233444333332 23456779999999988888887
Q ss_pred CCCCcc
Q psy969 78 LGPDWL 83 (106)
Q Consensus 78 lGa~w~ 83 (106)
+|++++
T Consensus 234 aGAd~V 239 (346)
T PRK05096 234 GGADFV 239 (346)
T ss_pred cCCCEE
Confidence 688754
No 231
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=61.70 E-value=17 Score=28.10 Aligned_cols=25 Identities=28% Similarity=0.336 Sum_probs=22.1
Q ss_pred ceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969 52 KIGLKPAGGISTFEDSVRWIYLVLIMLGPD 81 (106)
Q Consensus 52 ~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~ 81 (106)
.+-|=++|||++.++..++++ +|++
T Consensus 192 ~ipvi~~GGi~s~edi~~l~~-----~G~~ 216 (234)
T PRK13587 192 TIPVIASGGIRHQQDIQRLAS-----LNVH 216 (234)
T ss_pred CCCEEEeCCCCCHHHHHHHHH-----cCCC
Confidence 467889999999999999998 6885
No 232
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=61.28 E-value=24 Score=28.63 Aligned_cols=20 Identities=15% Similarity=0.119 Sum_probs=17.7
Q ss_pred eeEeecCCCCCHHHHHHHHH
Q psy969 53 IGLKPAGGISTFEDSVRWIY 72 (106)
Q Consensus 53 vgiKaaGGIrt~~~a~~~i~ 72 (106)
+-|=+.|+|+|.+++.++++
T Consensus 286 ipvi~~G~i~~~~~~~~~l~ 305 (343)
T cd04734 286 LPVFHAGRIRDPAEAEQALA 305 (343)
T ss_pred CCEEeeCCCCCHHHHHHHHH
Confidence 55777899999999999998
No 233
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=61.17 E-value=23 Score=27.30 Aligned_cols=49 Identities=16% Similarity=0.189 Sum_probs=33.0
Q ss_pred HHHhhCCCc-ccCCCCCCCCC--CCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHH
Q psy969 6 KVAFKGSNF-RTLHGRGPDST--SYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIY 72 (106)
Q Consensus 6 iai~aGadF-KTSTG~~~~ga--t~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~ 72 (106)
.|.++|+|+ |- .|.+. - +.-++-++.- . +.+.+=++|||.. +.+.+|++
T Consensus 112 ~A~~~Ga~~vK~----FPa~~~GG-----~~yikal~~p-------l-p~~~l~ptGGV~~-~n~~~~l~ 163 (201)
T PRK06015 112 ALREEGYTVLKF----FPAEQAGG-----AAFLKALSSP-------L-AGTFFCPTGGISL-KNARDYLS 163 (201)
T ss_pred HHHHCCCCEEEE----CCchhhCC-----HHHHHHHHhh-------C-CCCcEEecCCCCH-HHHHHHHh
Confidence 578899999 93 33211 1 2345544433 2 5688889999976 78999999
No 234
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=61.16 E-value=19 Score=29.09 Aligned_cols=51 Identities=14% Similarity=-0.010 Sum_probs=35.7
Q ss_pred chHHHHHHHHHHHHhhhcC--CceeEeecCCCCCHHHHHHHHHHHHhhCCCCcc
Q psy969 32 NTCGIIMCSAIKHFHKLSG--KKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWL 83 (106)
Q Consensus 32 ~~~v~lm~~~i~~~~~~~~--~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~w~ 83 (106)
+.+.+++.+.+++.++.++ -.|.||...|..+.++..++..++++ .|++++
T Consensus 113 l~~~~~~~eiv~avr~~~~~~~pVsvKiR~g~~~~~~~~~~a~~l~~-~Gvd~i 165 (312)
T PRK10550 113 LKDPELIYQGAKAMREAVPAHLPVTVKVRLGWDSGERKFEIADAVQQ-AGATEL 165 (312)
T ss_pred hcCHHHHHHHHHHHHHhcCCCcceEEEEECCCCCchHHHHHHHHHHh-cCCCEE
Confidence 4456666666666666664 57999999898777777777666543 788875
No 235
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=61.16 E-value=36 Score=26.15 Aligned_cols=34 Identities=21% Similarity=0.331 Sum_probs=24.8
Q ss_pred EeecCCCCCHHHHHHHHHHHHhhCCCCccCCCceeEeccchHHHH
Q psy969 55 LKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGASSLLNNI 99 (106)
Q Consensus 55 iKaaGGIrt~~~a~~~i~l~~~~lGa~w~~~~~~RiGtSs~~~~l 99 (106)
|=+=|||++.+++.++++ .|+| .+-+| |+.++.+
T Consensus 188 i~v~gGI~~~e~i~~~~~-----~gaD-----~vvvG-Sai~~~~ 221 (244)
T PRK13125 188 LVVGFGLDSPEDARDALS-----AGAD-----GVVVG-TAFIEEL 221 (244)
T ss_pred EEEeCCcCCHHHHHHHHH-----cCCC-----EEEEC-HHHHHHH
Confidence 446789999999999998 6885 45566 4454433
No 236
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=61.08 E-value=37 Score=24.80 Aligned_cols=61 Identities=16% Similarity=0.241 Sum_probs=36.2
Q ss_pred hhHHHhhCCCcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCC-HHHHHHHHHHHHhhCCCCc
Q psy969 4 PRKVAFKGSNFRTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGIST-FEDSVRWIYLVLIMLGPDW 82 (106)
Q Consensus 4 ~~iai~aGadFKTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt-~~~a~~~i~l~~~~lGa~w 82 (106)
.+.+.++||||-|..++. + ...+.-+.+.++++ +-++++-..+ ..| .+++..+.+ +|+++
T Consensus 69 ~~~~~~~Gad~i~vh~~~----~-----~~~~~~~i~~~~~~----g~~~~~~~~~-~~t~~~~~~~~~~-----~g~d~ 129 (206)
T TIGR03128 69 AEQAFAAGADIVTVLGVA----D-----DATIKGAVKAAKKH----GKEVQVDLIN-VKDKVKRAKELKE-----LGADY 129 (206)
T ss_pred HHHHHHcCCCEEEEeccC----C-----HHHHHHHHHHHHHc----CCEEEEEecC-CCChHHHHHHHHH-----cCCCE
Confidence 567889999995566543 2 22333444444432 5566653333 344 477777777 69988
Q ss_pred c
Q psy969 83 L 83 (106)
Q Consensus 83 ~ 83 (106)
+
T Consensus 130 v 130 (206)
T TIGR03128 130 I 130 (206)
T ss_pred E
Confidence 6
No 237
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=60.95 E-value=45 Score=25.91 Aligned_cols=70 Identities=16% Similarity=0.143 Sum_probs=38.1
Q ss_pred hhHHHhhCCCc-ccCCCCCCC----CCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHH-HHHHHHHHHhh
Q psy969 4 PRKVAFKGSNF-RTLHGRGPD----STSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFED-SVRWIYLVLIM 77 (106)
Q Consensus 4 ~~iai~aGadF-KTSTG~~~~----gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~-a~~~i~l~~~~ 77 (106)
++.+.++|+|+ --.-+ .|. +..+ ..+.+.+.+.+++.++.++-.+.+|.+..+.+..+ +..+.+
T Consensus 108 a~~~~~~G~d~iElN~~-cP~~~~~g~~~----~~~~~~~~eiv~~vr~~~~~Pv~vKl~~~~~~~~~~a~~~~~----- 177 (296)
T cd04740 108 AEKLADAGADAIELNIS-CPNVKGGGMAF----GTDPEAVAEIVKAVKKATDVPVIVKLTPNVTDIVEIARAAEE----- 177 (296)
T ss_pred HHHHHHcCCCEEEEECC-CCCCCCCcccc----cCCHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHHHH-----
Confidence 45667789988 33221 121 1221 12335555555555555677899999876654433 223333
Q ss_pred CCCCcc
Q psy969 78 LGPDWL 83 (106)
Q Consensus 78 lGa~w~ 83 (106)
+|++++
T Consensus 178 ~G~d~i 183 (296)
T cd04740 178 AGADGL 183 (296)
T ss_pred cCCCEE
Confidence 688765
No 238
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)
Probab=60.86 E-value=27 Score=28.83 Aligned_cols=38 Identities=11% Similarity=0.120 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969 34 CGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD 81 (106)
Q Consensus 34 ~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~ 81 (106)
+.+.|+++++. .++++-+=+|||| |++.+.+|.. .|.|
T Consensus 248 ~~e~l~~av~~----~~~~~~lEaSGGI-t~~ni~~yA~-----tGVD 285 (308)
T PLN02716 248 DVSMLKEAVEL----INGRFETEASGNV-TLDTVHKIGQ-----TGVT 285 (308)
T ss_pred CHHHHHHHHHh----hCCCceEEEECCC-CHHHHHHHHH-----cCCC
Confidence 45555555542 3466779999999 5888999988 7997
No 239
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=60.59 E-value=33 Score=26.61 Aligned_cols=27 Identities=41% Similarity=0.534 Sum_probs=22.3
Q ss_pred CceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969 51 KKIGLKPAGGISTFEDSVRWIYLVLIMLGPD 81 (106)
Q Consensus 51 ~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~ 81 (106)
.++-|=++|||++.+++.++++. .|++
T Consensus 195 ~~ipvIasGGv~s~eD~~~l~~~----~Gvd 221 (258)
T PRK01033 195 LKIPLIALGGAGSLDDIVEAILN----LGAD 221 (258)
T ss_pred CCCCEEEeCCCCCHHHHHHHHHH----CCCC
Confidence 35778899999999999999842 5775
No 240
>PTZ00095 40S ribosomal protein S19; Provisional
Probab=60.40 E-value=8.4 Score=29.49 Aligned_cols=15 Identities=27% Similarity=0.483 Sum_probs=11.7
Q ss_pred CCc-ccCCCCCCCCCC
Q psy969 12 SNF-RTLHGRGPDSTS 26 (106)
Q Consensus 12 adF-KTSTG~~~~gat 26 (106)
+|| ||++++.-.+-+
T Consensus 56 ~d~vKTg~~KElaP~d 71 (169)
T PTZ00095 56 TEIVKTSHGRELAPQN 71 (169)
T ss_pred hhhhcccccccCCCCC
Confidence 689 999998755555
No 241
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=60.14 E-value=35 Score=27.16 Aligned_cols=79 Identities=11% Similarity=0.021 Sum_probs=43.6
Q ss_pred hhhHHHhhCCCc-ccCCCCCCCC----CCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCH-HHHHHHHHHHHh
Q psy969 3 RPRKVAFKGSNF-RTLHGRGPDS----TSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTF-EDSVRWIYLVLI 76 (106)
Q Consensus 3 ~~~iai~aGadF-KTSTG~~~~g----at~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~-~~a~~~i~l~~~ 76 (106)
+++.+.++|+|. --.-| .|.+ -..|+.-..+.+++.+.++..++.++-.+.+|..+|.... .+..++++..+
T Consensus 80 aa~~~~~~G~d~IelN~g-cP~~~~~~~~~Gs~l~~~~~~~~ei~~~vr~~~~~pv~vKir~g~~~~~~~~~~~a~~l~- 157 (319)
T TIGR00737 80 AAKINEELGADIIDINMG-CPVPKITKKGAGSALLRDPDLIGKIVKAVVDAVDIPVTVKIRIGWDDAHINAVEAARIAE- 157 (319)
T ss_pred HHHHHHhCCCCEEEEECC-CCHHHhcCCCccchHhCCHHHHHHHHHHHHhhcCCCEEEEEEcccCCCcchHHHHHHHHH-
Confidence 355667778876 44333 2210 0112222345667777777666667788999998876421 22333333221
Q ss_pred hCCCCcc
Q psy969 77 MLGPDWL 83 (106)
Q Consensus 77 ~lGa~w~ 83 (106)
-.|++++
T Consensus 158 ~~G~d~i 164 (319)
T TIGR00737 158 DAGAQAV 164 (319)
T ss_pred HhCCCEE
Confidence 2688876
No 242
>PRK08508 biotin synthase; Provisional
Probab=59.99 E-value=46 Score=26.16 Aligned_cols=61 Identities=20% Similarity=0.121 Sum_probs=37.7
Q ss_pred hhCCC-c-ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCCcc
Q psy969 9 FKGSN-F-RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWL 83 (106)
Q Consensus 9 ~aGad-F-KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~w~ 83 (106)
+.|++ | -+..|+.+.... .+.+.-+.+.|++. .+.+.++++-|..+.++..+|.+ +|.+.+
T Consensus 54 ~~g~~~~~lv~sg~~~~~~~-----~e~~~ei~~~ik~~----~p~l~i~~s~G~~~~e~l~~Lk~-----aGld~~ 116 (279)
T PRK08508 54 ANGALGFCLVTSGRGLDDKK-----LEYVAEAAKAVKKE----VPGLHLIACNGTASVEQLKELKK-----AGIFSY 116 (279)
T ss_pred HCCCCEEEEEeccCCCCccc-----HHHHHHHHHHHHhh----CCCcEEEecCCCCCHHHHHHHHH-----cCCCEE
Confidence 34553 3 444555433233 44444444444421 35678899999999999999999 688643
No 243
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=59.01 E-value=36 Score=25.26 Aligned_cols=20 Identities=25% Similarity=0.368 Sum_probs=18.3
Q ss_pred eeEeecCCCCCHHHHHHHHH
Q psy969 53 IGLKPAGGISTFEDSVRWIY 72 (106)
Q Consensus 53 vgiKaaGGIrt~~~a~~~i~ 72 (106)
+-|=++|||+|.+|+.++.+
T Consensus 191 ipvia~GGi~~~~di~~~~~ 210 (233)
T PRK00748 191 IPVIASGGVSSLDDIKALKG 210 (233)
T ss_pred CCEEEeCCCCCHHHHHHHHH
Confidence 66778999999999999999
No 244
>TIGR02814 pfaD_fam PfaD family protein. The protein PfaD is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the seed alignment for this model are found in loci presumed to act in polyketide biosyntheses per se.
Probab=58.68 E-value=19 Score=31.09 Aligned_cols=35 Identities=31% Similarity=0.417 Sum_probs=28.3
Q ss_pred CCceeEeecCCCCCHHHHHHHHHHHHhhCCCCccCCCcee
Q psy969 50 GKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFR 89 (106)
Q Consensus 50 ~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~w~~~~~~R 89 (106)
+.+|-|=+||||-|.+++.+.+. +|++.+.-++--
T Consensus 222 ~~~VpViAAGGI~t~~~vaAAla-----LGAdgV~~GT~f 256 (444)
T TIGR02814 222 RKPIRVGAAGGIGTPEAAAAAFM-----LGADFIVTGSVN 256 (444)
T ss_pred CCCceEEEeCCCCCHHHHHHHHH-----cCCcEEEeccHH
Confidence 34678899999999999999999 799866555443
No 245
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=58.54 E-value=22 Score=28.83 Aligned_cols=21 Identities=19% Similarity=0.335 Sum_probs=17.8
Q ss_pred ceeEeecCCCCCHHHHHHHHH
Q psy969 52 KIGLKPAGGISTFEDSVRWIY 72 (106)
Q Consensus 52 ~vgiKaaGGIrt~~~a~~~i~ 72 (106)
.+-|=..|||+|.+|+.++++
T Consensus 195 ~ipVi~NGdI~s~~da~~~l~ 215 (318)
T TIGR00742 195 HLTIEINGGIKNSEQIKQHLS 215 (318)
T ss_pred CCcEEEECCcCCHHHHHHHHh
Confidence 466667999999999999985
No 246
>COG2238 RPS19A Ribosomal protein S19E (S16A) [Translation, ribosomal structure and biogenesis]
Probab=58.44 E-value=6.4 Score=29.57 Aligned_cols=15 Identities=7% Similarity=0.058 Sum_probs=11.6
Q ss_pred CCc-ccCCCCCCCCCC
Q psy969 12 SNF-RTLHGRGPDSTS 26 (106)
Q Consensus 12 adF-KTSTG~~~~gat 26 (106)
+|| ||+.++.-++..
T Consensus 32 a~~vKTG~~kE~~P~~ 47 (147)
T COG2238 32 ADIVKTGVHKERPPEQ 47 (147)
T ss_pred hhhhhccccccCCCCC
Confidence 799 999999755444
No 247
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=57.85 E-value=17 Score=28.02 Aligned_cols=53 Identities=17% Similarity=0.124 Sum_probs=33.9
Q ss_pred hhHHHhhCCCcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCCcc
Q psy969 4 PRKVAFKGSNFRTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWL 83 (106)
Q Consensus 4 ~~iai~aGadFKTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~w~ 83 (106)
.+.++++||||-+|-|+. ++ ++..+ .+.+|=..=|+-|+.++.+.++ +|++.+
T Consensus 80 a~~a~~aGA~FivsP~~~----------~~---vi~~a---------~~~~i~~iPG~~TptEi~~a~~-----~Ga~~v 132 (212)
T PRK05718 80 LAQAIEAGAQFIVSPGLT----------PP---LLKAA---------QEGPIPLIPGVSTPSELMLGME-----LGLRTF 132 (212)
T ss_pred HHHHHHcCCCEEECCCCC----------HH---HHHHH---------HHcCCCEeCCCCCHHHHHHHHH-----CCCCEE
Confidence 578999999995555553 32 22222 1234444447888888888888 688753
No 248
>COG2070 Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only]
Probab=57.58 E-value=29 Score=28.56 Aligned_cols=78 Identities=17% Similarity=0.139 Sum_probs=48.1
Q ss_pred hhHHHhhCCCcccCCCCCCCCCCCCCCCchH--HHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969 4 PRKVAFKGSNFRTLHGRGPDSTSYGNVCNTC--GIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD 81 (106)
Q Consensus 4 ~~iai~aGadFKTSTG~~~~gat~~~~~~~~--v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~ 81 (106)
.+.+.++|+|.----|...+|=+ +++|.+- ..|+.+..+.+ .. |-|=+||||-|.++..+.+. +|++
T Consensus 140 A~~~~~~G~d~vI~~g~eAGGH~-g~~~~~~~t~~Lv~ev~~~~----~~-iPViAAGGI~dg~~i~AAla-----lGA~ 208 (336)
T COG2070 140 ALKAERAGADAVIAQGAEAGGHR-GGVDLEVSTFALVPEVVDAV----DG-IPVIAAGGIADGRGIAAALA-----LGAD 208 (336)
T ss_pred HHHHHhCCCCEEEecCCcCCCcC-CCCCCCccHHHHHHHHHHHh----cC-CCEEEecCccChHHHHHHHH-----hccH
Confidence 35667788888223444333322 1133332 44444443322 22 78889999999999999999 7998
Q ss_pred ccCCCceeEec
Q psy969 82 WLNKDLFRIGA 92 (106)
Q Consensus 82 w~~~~~~RiGt 92 (106)
-+.-++--+.|
T Consensus 209 gVq~GT~Fl~t 219 (336)
T COG2070 209 GVQMGTRFLAT 219 (336)
T ss_pred HHHhhhhhhcc
Confidence 77666655555
No 249
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=57.34 E-value=86 Score=24.03 Aligned_cols=60 Identities=18% Similarity=0.181 Sum_probs=33.4
Q ss_pred hhHHHhhCCCc--ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969 4 PRKVAFKGSNF--RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD 81 (106)
Q Consensus 4 ~~iai~aGadF--KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~ 81 (106)
++..+++|... -|-+. | .. .+.++.+++ +| +++-|= +|.|.|.+|+.+.++ +|++
T Consensus 26 ~~al~~gGi~~iEiT~~t--~--~a-----~~~I~~l~~---~~-----p~~~vG-AGTV~~~e~a~~a~~-----aGA~ 82 (196)
T PF01081_consen 26 AEALIEGGIRAIEITLRT--P--NA-----LEAIEALRK---EF-----PDLLVG-AGTVLTAEQAEAAIA-----AGAQ 82 (196)
T ss_dssp HHHHHHTT--EEEEETTS--T--TH-----HHHHHHHHH---HH-----TTSEEE-EES--SHHHHHHHHH-----HT-S
T ss_pred HHHHHHCCCCEEEEecCC--c--cH-----HHHHHHHHH---HC-----CCCeeE-EEeccCHHHHHHHHH-----cCCC
Confidence 45667777777 66653 1 11 334444433 22 345553 599999999999999 6998
Q ss_pred cc-CCC
Q psy969 82 WL-NKD 86 (106)
Q Consensus 82 w~-~~~ 86 (106)
++ +|+
T Consensus 83 FivSP~ 88 (196)
T PF01081_consen 83 FIVSPG 88 (196)
T ss_dssp EEEESS
T ss_pred EEECCC
Confidence 52 554
No 250
>COG0119 LeuA Isopropylmalate/homocitrate/citramalate synthases [Amino acid transport and metabolism]
Probab=56.94 E-value=27 Score=29.67 Aligned_cols=73 Identities=18% Similarity=0.184 Sum_probs=46.3
Q ss_pred hhHHHhhCCCc--ccCCCCC--CCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCC
Q psy969 4 PRKVAFKGSNF--RTLHGRG--PDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLG 79 (106)
Q Consensus 4 ~~iai~aGadF--KTSTG~~--~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lG 79 (106)
+..|+++||++ -|-.|.+ ++++. ++.+....... ...+++. |++. ++..+.-+++++.+|
T Consensus 209 slaAv~aGa~~v~~TvnGiGERaGna~-----l~~v~~~l~~~--------~~~~~~~--~idl-~~l~~~s~~v~~~~~ 272 (409)
T COG0119 209 SLAAVEAGADQVEGTVNGIGERAGNAA-----LEEVVLALALR--------KDYGVDT--GIDL-EKLTEASRLVERLTG 272 (409)
T ss_pred HHHHHHcCCcEEEEecccceecccccc-----HHHHHHHHHHH--------hhcCCcc--CCCH-HHHHHHHHHHHHHhC
Confidence 56789999999 7788887 67777 88766544332 2233333 3433 233334444446688
Q ss_pred CCccCCCceeEecc
Q psy969 80 PDWLNKDLFRIGAS 93 (106)
Q Consensus 80 a~w~~~~~~RiGtS 93 (106)
.. +.|+.-++|..
T Consensus 273 ~~-v~~n~pivG~n 285 (409)
T COG0119 273 IP-VPPNKPIVGEN 285 (409)
T ss_pred CC-CCCCCCchhhH
Confidence 75 78888888863
No 251
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=56.82 E-value=36 Score=29.36 Aligned_cols=60 Identities=20% Similarity=0.305 Sum_probs=37.2
Q ss_pred hhHHHhhCCCc---ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCC
Q psy969 4 PRKVAFKGSNF---RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGP 80 (106)
Q Consensus 4 ~~iai~aGadF---KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa 80 (106)
.+..+++|+|+ -+++|. + ...++.+ +.|+ +.. +.+-|=+ |-|-|.++|+++++ +|+
T Consensus 232 a~~Lv~aGvd~i~~D~a~~~-----~-----~~~~~~i-~~ik---~~~-p~~~v~a-gnv~t~~~a~~l~~-----aGa 290 (479)
T PRK07807 232 ARALLEAGVDVLVVDTAHGH-----Q-----EKMLEAL-RAVR---ALD-PGVPIVA-GNVVTAEGTRDLVE-----AGA 290 (479)
T ss_pred HHHHHHhCCCEEEEeccCCc-----c-----HHHHHHH-HHHH---HHC-CCCeEEe-eccCCHHHHHHHHH-----cCC
Confidence 34566788988 556664 1 2222222 2232 223 4455544 99999999999999 799
Q ss_pred CccC
Q psy969 81 DWLN 84 (106)
Q Consensus 81 ~w~~ 84 (106)
|.+-
T Consensus 291 d~v~ 294 (479)
T PRK07807 291 DIVK 294 (479)
T ss_pred CEEE
Confidence 7543
No 252
>KOG2550|consensus
Probab=56.38 E-value=35 Score=30.10 Aligned_cols=72 Identities=18% Similarity=0.129 Sum_probs=49.0
Q ss_pred hhHHHhhCCCc---ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCC
Q psy969 4 PRKVAFKGSNF---RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGP 80 (106)
Q Consensus 4 ~~iai~aGadF---KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa 80 (106)
.++...+|+|+ -.|.|.+- -. ++-++.+++. =++..|=+ |-|=|.+||..+|. +|+
T Consensus 256 l~ll~~aGvdvviLDSSqGnS~--~q-----iemik~iK~~--------yP~l~Via-GNVVT~~qa~nLI~-----aGa 314 (503)
T KOG2550|consen 256 LDLLVQAGVDVVILDSSQGNSI--YQ-----LEMIKYIKET--------YPDLQIIA-GNVVTKEQAANLIA-----AGA 314 (503)
T ss_pred HHHhhhcCCcEEEEecCCCcch--hH-----HHHHHHHHhh--------CCCceeec-cceeeHHHHHHHHH-----ccC
Confidence 45677889999 66777542 22 3344444433 36677755 89999999999999 798
Q ss_pred CccCCCceeEeccchHHHHHH
Q psy969 81 DWLNKDLFRIGASSLLNNILQ 101 (106)
Q Consensus 81 ~w~~~~~~RiGtSs~~~~l~~ 101 (106)
| -.|+|..++--.+-|
T Consensus 315 D-----gLrVGMGsGSiCiTq 330 (503)
T KOG2550|consen 315 D-----GLRVGMGSGSICITQ 330 (503)
T ss_pred c-----eeEeccccCceeeec
Confidence 5 679988776544444
No 253
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=56.20 E-value=35 Score=27.50 Aligned_cols=25 Identities=44% Similarity=0.575 Sum_probs=21.9
Q ss_pred CCCCCHHHHHHHHHHHHhhCCCCccCCCceeEecc
Q psy969 59 GGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGAS 93 (106)
Q Consensus 59 GGIrt~~~a~~~i~l~~~~lGa~w~~~~~~RiGtS 93 (106)
.||+|.+|+..+.. .|+ +.|-||+|
T Consensus 214 SGI~~~~dv~~l~~-----~ga-----~a~LVG~s 238 (254)
T COG0134 214 SGISTPEDVRRLAK-----AGA-----DAFLVGEA 238 (254)
T ss_pred CCCCCHHHHHHHHH-----cCC-----CEEEecHH
Confidence 47999999999999 687 47899987
No 254
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=55.81 E-value=23 Score=27.40 Aligned_cols=22 Identities=32% Similarity=0.273 Sum_probs=18.4
Q ss_pred EeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969 55 LKPAGGISTFEDSVRWIYLVLIMLGPD 81 (106)
Q Consensus 55 iKaaGGIrt~~~a~~~i~l~~~~lGa~ 81 (106)
+=+||||++.+|..++.+ +|++
T Consensus 192 viasGGv~s~~Dl~~l~~-----~G~~ 213 (232)
T PRK13586 192 KEYAGGVSSDADLEYLKN-----VGFD 213 (232)
T ss_pred EEEECCCCCHHHHHHHHH-----CCCC
Confidence 447999999999999987 5764
No 255
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=55.71 E-value=35 Score=28.21 Aligned_cols=20 Identities=20% Similarity=0.082 Sum_probs=17.5
Q ss_pred eeEeecCCCCCHHHHHHHHH
Q psy969 53 IGLKPAGGISTFEDSVRWIY 72 (106)
Q Consensus 53 vgiKaaGGIrt~~~a~~~i~ 72 (106)
+-|=++|||+|.+++.++++
T Consensus 306 ~pvi~~G~i~~~~~~~~~l~ 325 (382)
T cd02931 306 VPVIMAGRMEDPELASEAIN 325 (382)
T ss_pred CCEEEeCCCCCHHHHHHHHH
Confidence 44558999999999999998
No 256
>PLN02591 tryptophan synthase
Probab=55.46 E-value=92 Score=24.63 Aligned_cols=39 Identities=21% Similarity=0.174 Sum_probs=25.8
Q ss_pred hHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969 33 TCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD 81 (106)
Q Consensus 33 ~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~ 81 (106)
+++....+.++++ .+-.+-+ =-||+|.+|+.++.+ +|+|
T Consensus 175 ~~~~~~i~~vk~~---~~~Pv~v--GFGI~~~e~v~~~~~-----~GAD 213 (250)
T PLN02591 175 GRVESLLQELKEV---TDKPVAV--GFGISKPEHAKQIAG-----WGAD 213 (250)
T ss_pred hhHHHHHHHHHhc---CCCceEE--eCCCCCHHHHHHHHh-----cCCC
Confidence 4555555555543 4444544 239999999999999 6775
No 257
>PRK06256 biotin synthase; Validated
Probab=55.13 E-value=31 Score=27.32 Aligned_cols=63 Identities=24% Similarity=0.277 Sum_probs=37.9
Q ss_pred hHHHhhCCC-c-ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCCc
Q psy969 5 RKVAFKGSN-F-RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDW 82 (106)
Q Consensus 5 ~iai~aGad-F-KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~w 82 (106)
+.+.+.|+. | -.+.|+.|.... .+.+.-+.+.|++ . ..+.+.++.|.-+.+++..|.+ +|.+.
T Consensus 101 ~~~~~~g~~~~~l~~~g~~p~~~~-----~~~~~e~i~~i~~---~--~~i~~~~~~g~l~~e~l~~Lke-----aG~~~ 165 (336)
T PRK06256 101 KEAIEEGAGTFCIVASGRGPSGKE-----VDQVVEAVKAIKE---E--TDLEICACLGLLTEEQAERLKE-----AGVDR 165 (336)
T ss_pred HHHHHCCCCEEEEEecCCCCCchH-----HHHHHHHHHHHHh---c--CCCcEEecCCcCCHHHHHHHHH-----hCCCE
Confidence 344556763 5 555566543322 3344444444432 1 3567788899999999998888 68764
No 258
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=54.91 E-value=40 Score=30.72 Aligned_cols=34 Identities=18% Similarity=0.268 Sum_probs=25.9
Q ss_pred cCCceeEeec-CCCCCHHHHHHHHHHHHhhCCCCccCCCceeEecc
Q psy969 49 SGKKIGLKPA-GGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGAS 93 (106)
Q Consensus 49 ~~~~vgiKaa-GGIrt~~~a~~~i~l~~~~lGa~w~~~~~~RiGtS 93 (106)
.+..+ +++| +||+|.+|+..+.. +|++ .+-||+|
T Consensus 208 ip~~~-~~VsESGI~~~~d~~~l~~-----~G~d-----avLIGes 242 (695)
T PRK13802 208 LPDDV-IKVAESGVFGAVEVEDYAR-----AGAD-----AVLVGEG 242 (695)
T ss_pred CCCCc-EEEEcCCCCCHHHHHHHHH-----CCCC-----EEEECHH
Confidence 34443 4444 78999999999998 6874 7889986
No 259
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=54.77 E-value=57 Score=24.91 Aligned_cols=26 Identities=23% Similarity=0.304 Sum_probs=21.8
Q ss_pred ceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969 52 KIGLKPAGGISTFEDSVRWIYLVLIMLGPD 81 (106)
Q Consensus 52 ~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~ 81 (106)
.+-|=++|||+|.++..++++. .|++
T Consensus 197 ~ipvia~GGv~s~~d~~~~~~~----~G~~ 222 (253)
T PRK02083 197 NVPVIASGGAGNLEHFVEAFTE----GGAD 222 (253)
T ss_pred CCCEEEECCCCCHHHHHHHHHh----CCcc
Confidence 4778899999999999998873 4764
No 260
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=54.47 E-value=33 Score=27.70 Aligned_cols=46 Identities=15% Similarity=-0.063 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCCccC
Q psy969 34 CGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLN 84 (106)
Q Consensus 34 ~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~w~~ 84 (106)
+.+.+++.|++..+..+-+|.+|.+|-..|.++|..+.+ +|++.++
T Consensus 162 df~~~~~~i~~l~~~~~vPVivK~~g~g~s~~~a~~l~~-----~Gvd~I~ 207 (326)
T cd02811 162 DFRGWLERIEELVKALSVPVIVKEVGFGISRETAKRLAD-----AGVKAID 207 (326)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEecCCCCCHHHHHHHHH-----cCCCEEE
Confidence 344455566666666678899999987788999999998 7998765
No 261
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=54.38 E-value=57 Score=27.54 Aligned_cols=57 Identities=16% Similarity=0.053 Sum_probs=35.0
Q ss_pred hhHHHhh--CCCc---ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhC
Q psy969 4 PRKVAFK--GSNF---RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIML 78 (106)
Q Consensus 4 ~~iai~a--GadF---KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~l 78 (106)
.+..+++ |+|| -|++|... .. ++.++-+++ ..+...-| +|-|-|.++|+++++ +
T Consensus 112 ~~~L~~a~~~~d~iviD~AhGhs~--~~-----i~~ik~ir~-------~~p~~~vi--aGNV~T~e~a~~Li~-----a 170 (343)
T TIGR01305 112 MTSILEAVPQLKFICLDVANGYSE--HF-----VEFVKLVRE-------AFPEHTIM--AGNVVTGEMVEELIL-----S 170 (343)
T ss_pred HHHHHhcCCCCCEEEEECCCCcHH--HH-----HHHHHHHHh-------hCCCCeEE--EecccCHHHHHHHHH-----c
Confidence 4455666 4888 67777641 11 223333332 24443333 366999999999999 7
Q ss_pred CCC
Q psy969 79 GPD 81 (106)
Q Consensus 79 Ga~ 81 (106)
|+|
T Consensus 171 GAD 173 (343)
T TIGR01305 171 GAD 173 (343)
T ss_pred CCC
Confidence 986
No 262
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=54.23 E-value=15 Score=29.64 Aligned_cols=23 Identities=26% Similarity=0.346 Sum_probs=20.3
Q ss_pred CceeEeecCCCCCHHHHHHHHHH
Q psy969 51 KKIGLKPAGGISTFEDSVRWIYL 73 (106)
Q Consensus 51 ~~vgiKaaGGIrt~~~a~~~i~l 73 (106)
..+-|=+||||++++|..++.++
T Consensus 206 ~~ipVIASGGv~sleDi~~L~~~ 228 (262)
T PLN02446 206 SPIPVTYAGGVRSLDDLERVKVA 228 (262)
T ss_pred CCCCEEEECCCCCHHHHHHHHHc
Confidence 45778899999999999999883
No 263
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=53.69 E-value=49 Score=27.95 Aligned_cols=51 Identities=20% Similarity=0.167 Sum_probs=33.4
Q ss_pred hCCCc---ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969 10 KGSNF---RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD 81 (106)
Q Consensus 10 aGadF---KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~ 81 (106)
+|+|| -+++|.. . .+.-|.+.|++ .. +++-| .+|-|-|.+.+.++++ +|+|
T Consensus 121 ~g~D~iviD~AhGhs----------~-~~i~~ik~ik~---~~-P~~~v-IaGNV~T~e~a~~Li~-----aGAD 174 (346)
T PRK05096 121 PALNFICIDVANGYS----------E-HFVQFVAKARE---AW-PDKTI-CAGNVVTGEMVEELIL-----SGAD 174 (346)
T ss_pred CCCCEEEEECCCCcH----------H-HHHHHHHHHHH---hC-CCCcE-EEecccCHHHHHHHHH-----cCCC
Confidence 59999 6778763 2 22222233332 23 34544 4599999999999999 7986
No 264
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=53.04 E-value=71 Score=24.97 Aligned_cols=75 Identities=12% Similarity=0.055 Sum_probs=37.7
Q ss_pred hhHHHhhC-CCc-ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969 4 PRKVAFKG-SNF-RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD 81 (106)
Q Consensus 4 ~~iai~aG-adF-KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~ 81 (106)
++.+.++| +|+ -=.-+ .|.....+..-..+.+.+.+.++..++.....|.+|.+..+.+..+..+.++. .|++
T Consensus 110 a~~~~~aG~~D~iElN~~-cP~~~~gg~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~~~~~~~~a~~l~~----~G~d 184 (301)
T PRK07259 110 AEKLSKAPNVDAIELNIS-CPNVKHGGMAFGTDPELAYEVVKAVKEVVKVPVIVKLTPNVTDIVEIAKAAEE----AGAD 184 (301)
T ss_pred HHHHhccCCcCEEEEECC-CCCCCCCccccccCHHHHHHHHHHHHHhcCCCEEEEcCCCchhHHHHHHHHHH----cCCC
Confidence 45566777 888 43221 11110000001223455555555555556778999998655443333332222 6887
Q ss_pred cc
Q psy969 82 WL 83 (106)
Q Consensus 82 w~ 83 (106)
.+
T Consensus 185 ~i 186 (301)
T PRK07259 185 GL 186 (301)
T ss_pred EE
Confidence 65
No 265
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=52.52 E-value=47 Score=26.51 Aligned_cols=61 Identities=23% Similarity=0.261 Sum_probs=0.0
Q ss_pred hhHHHhhCCCc--ccCCCCCC----CCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhh
Q psy969 4 PRKVAFKGSNF--RTLHGRGP----DSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIM 77 (106)
Q Consensus 4 ~~iai~aGadF--KTSTG~~~----~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~ 77 (106)
+-.|+++|+|+ -|-.|.+- +|.+ ||++.|++-.+++. .+-..+|+ ++...++-+.+++.
T Consensus 217 ~laA~~aG~~~id~s~~GlGecpfa~g~a-GN~~~E~lv~~L~~-------~g~~t~id-------l~~l~~~~~~~~~~ 281 (287)
T PRK05692 217 IYASLEEGITVFDASVGGLGGCPYAPGAS-GNVATEDVLYMLHG-------LGIETGID-------LDKLVRAGQFIQSK 281 (287)
T ss_pred HHHHHHhCCCEEEEEccccCCCCCCCCcc-ccccHHHHHHHHHh-------cCCCCCcC-------HHHHHHHHHHHHHH
Q ss_pred CC
Q psy969 78 LG 79 (106)
Q Consensus 78 lG 79 (106)
.|
T Consensus 282 ~~ 283 (287)
T PRK05692 282 LG 283 (287)
T ss_pred hC
No 266
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=51.76 E-value=30 Score=28.71 Aligned_cols=37 Identities=27% Similarity=0.213 Sum_probs=29.6
Q ss_pred chHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCCcc
Q psy969 32 NTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWL 83 (106)
Q Consensus 32 ~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~w~ 83 (106)
.++++-+++. .+.++.+| ||-+.++|+..++ +|++++
T Consensus 210 ~~~l~~lr~~-------~~~PvivK---gv~~~~dA~~a~~-----~G~d~I 246 (351)
T cd04737 210 PADIEFIAKI-------SGLPVIVK---GIQSPEDADVAIN-----AGADGI 246 (351)
T ss_pred HHHHHHHHHH-------hCCcEEEe---cCCCHHHHHHHHH-----cCCCEE
Confidence 5666665544 46789999 6999999999999 799875
No 267
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=51.49 E-value=30 Score=29.05 Aligned_cols=39 Identities=21% Similarity=0.107 Sum_probs=30.6
Q ss_pred CCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCCcc
Q psy969 30 VCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWL 83 (106)
Q Consensus 30 ~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~w~ 83 (106)
.+.++++-|++. .+.++-|| ||-+.++|...++ +|++++
T Consensus 215 ~~w~~i~~l~~~-------~~~PvivK---Gv~~~eda~~a~~-----~Gvd~I 253 (367)
T TIGR02708 215 LSPRDIEEIAGY-------SGLPVYVK---GPQCPEDADRALK-----AGASGI 253 (367)
T ss_pred CCHHHHHHHHHh-------cCCCEEEe---CCCCHHHHHHHHH-----cCcCEE
Confidence 335677776654 46789999 7999999999999 799843
No 268
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=51.43 E-value=37 Score=24.50 Aligned_cols=25 Identities=20% Similarity=0.310 Sum_probs=19.9
Q ss_pred ceeEeecCCCCCHHHHHHHHHHHHhhCCCCc
Q psy969 52 KIGLKPAGGISTFEDSVRWIYLVLIMLGPDW 82 (106)
Q Consensus 52 ~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~w 82 (106)
.+-|=++|||+ .+.+.++++ .|+++
T Consensus 165 ~~~i~v~GGI~-~env~~l~~-----~gad~ 189 (210)
T TIGR01163 165 SILIEVDGGVN-DDNARELAE-----AGADI 189 (210)
T ss_pred CceEEEECCcC-HHHHHHHHH-----cCCCE
Confidence 35677889996 699999998 68863
No 269
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=51.20 E-value=54 Score=27.08 Aligned_cols=26 Identities=23% Similarity=0.096 Sum_probs=21.8
Q ss_pred eeEeecCCCCCHHHHHHHHHHHHhhCCCCcc
Q psy969 53 IGLKPAGGISTFEDSVRWIYLVLIMLGPDWL 83 (106)
Q Consensus 53 vgiKaaGGIrt~~~a~~~i~l~~~~lGa~w~ 83 (106)
.-++.+|.|-|.++|+.+++ +|++.+
T Consensus 137 ~~~vi~GnV~t~e~a~~l~~-----aGad~I 162 (321)
T TIGR01306 137 DSFVIAGNVGTPEAVRELEN-----AGADAT 162 (321)
T ss_pred CCEEEEecCCCHHHHHHHHH-----cCcCEE
Confidence 34577788999999999999 799865
No 270
>PRK07188 nicotinate phosphoribosyltransferase; Provisional
Probab=50.11 E-value=50 Score=27.59 Aligned_cols=49 Identities=14% Similarity=0.220 Sum_probs=34.6
Q ss_pred chHHHHHHHHHHHHhhhcC-CceeEeecCCCCCHHHHHHHHHHHHhhCCCCccCCCceeEecc
Q psy969 32 NTCGIIMCSAIKHFHKLSG-KKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGAS 93 (106)
Q Consensus 32 ~~~v~lm~~~i~~~~~~~~-~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~w~~~~~~RiGtS 93 (106)
++.++.+++.+.+ .+ +++.|=+|||| +.+...+|.+ .|++ -+.|=+||+
T Consensus 263 ~~l~~~vr~~Ld~----~g~~~vkI~aSgGi-ne~~I~~~~~-----~g~p---iD~~GVGt~ 312 (352)
T PRK07188 263 PELIKALRKALDE----NGGKHVKIIVSSGF-DAKKIREFEA-----QNVP---VDIYGVGSS 312 (352)
T ss_pred HHHHHHHHHHHhh----CCCCCcEEEEeCCC-CHHHHHHHHH-----cCCC---ccEEecCcc
Confidence 7777777766643 35 88999999999 5677777877 5753 345556664
No 271
>PRK13813 orotidine 5'-phosphate decarboxylase; Provisional
Probab=49.98 E-value=52 Score=24.35 Aligned_cols=67 Identities=15% Similarity=0.051 Sum_probs=39.0
Q ss_pred hhHHHhhCCCc-ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCH-HHHHHHHHHHHhhCCCC
Q psy969 4 PRKVAFKGSNF-RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTF-EDSVRWIYLVLIMLGPD 81 (106)
Q Consensus 4 ~~iai~aGadF-KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~-~~a~~~i~l~~~~lGa~ 81 (106)
.+++.+.|++. |.+. .. ++.++.+++. .+..+-+ ..|||+.- ..+..+++ .|++
T Consensus 132 ~~m~~e~G~~g~~~~~------~~-----~~~i~~l~~~-------~~~~~~i-vdgGI~~~g~~~~~~~~-----aGad 187 (215)
T PRK13813 132 AKLAQEAGAFGVVAPA------TR-----PERVRYIRSR-------LGDELKI-ISPGIGAQGGKAADAIK-----AGAD 187 (215)
T ss_pred HHHHHHhCCCeEEECC------Cc-----chhHHHHHHh-------cCCCcEE-EeCCcCCCCCCHHHHHH-----cCCC
Confidence 34666777776 5221 22 4455555443 3455667 88999874 23666667 6998
Q ss_pred ccCCCceeEeccc
Q psy969 82 WLNKDLFRIGASS 94 (106)
Q Consensus 82 w~~~~~~RiGtSs 94 (106)
++--+..-+.+..
T Consensus 188 ~iV~Gr~I~~~~d 200 (215)
T PRK13813 188 YVIVGRSIYNAAD 200 (215)
T ss_pred EEEECcccCCCCC
Confidence 6655555555433
No 272
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=49.48 E-value=48 Score=25.59 Aligned_cols=53 Identities=21% Similarity=0.298 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCCccCCCceeEe
Q psy969 35 GIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIG 91 (106)
Q Consensus 35 v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~w~~~~~~RiG 91 (106)
-..+.+.++..++ .+-.|.+|...|+. ++..++...++ -.|++++++....-|
T Consensus 125 p~~l~eiv~avr~-~~~pVsvKir~g~~--~~~~~la~~l~-~aG~d~ihv~~~~~g 177 (233)
T cd02911 125 PERLSEFIKALKE-TGVPVSVKIRAGVD--VDDEELARLIE-KAGADIIHVDAMDPG 177 (233)
T ss_pred HHHHHHHHHHHHh-cCCCEEEEEcCCcC--cCHHHHHHHHH-HhCCCEEEECcCCCC
Confidence 3344444444433 36789999999983 23333322222 179998877654433
No 273
>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.
Probab=49.37 E-value=53 Score=27.34 Aligned_cols=42 Identities=24% Similarity=0.357 Sum_probs=29.2
Q ss_pred HHHHHHHHHhhhcC-CceeEeecCCCCCHHHHHHHHHHHHhhCCCCcc
Q psy969 37 IMCSAIKHFHKLSG-KKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWL 83 (106)
Q Consensus 37 lm~~~i~~~~~~~~-~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~w~ 83 (106)
.+.+.|+++++..+ .+|++|..++. +.+++...++. .|+|++
T Consensus 200 ~l~~~I~~lr~~~~~~pV~vK~~~~~-~~~~~a~~~~~----~g~D~I 242 (392)
T cd02808 200 DLAQLIEDLREATGGKPIGVKLVAGH-GEGDIAAGVAA----AGADFI 242 (392)
T ss_pred HHHHHHHHHHHhCCCceEEEEECCCC-CHHHHHHHHHH----cCCCEE
Confidence 34444555555566 78999998876 77888877774 458765
No 274
>cd08205 RuBisCO_IV_RLP Ribulose bisphosphate carboxylase like proteins, Rubisco-Form IV. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions, like for example 2,3-diketo-5-methylthiopentyl-1-phosphate enolase or 5-methyl
Probab=48.76 E-value=87 Score=25.98 Aligned_cols=71 Identities=13% Similarity=0.095 Sum_probs=45.4
Q ss_pred hhHHHhhCCCc-ccC--CCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCC-CCHHHHHHHHHHHHhhCC
Q psy969 4 PRKVAFKGSNF-RTL--HGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGI-STFEDSVRWIYLVLIMLG 79 (106)
Q Consensus 4 ~~iai~aGadF-KTS--TG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGI-rt~~~a~~~i~l~~~~lG 79 (106)
++-.+++|+|| |-- +|-.+.-.- .|-+++..+++++..+.++++.-+= ++| -+.+++++..+.+++ +|
T Consensus 152 ~~~l~~gGvD~Ikdde~~ge~~~~~~-----eER~~~v~~av~~a~~~TG~~~~y~--~nit~~~~e~i~~a~~a~~-~G 223 (367)
T cd08205 152 AYELALGGIDLIKDDELLADQPYAPF-----EERVRACMEAVRRANEETGRKTLYA--PNITGDPDELRRRADRAVE-AG 223 (367)
T ss_pred HHHHHhcCCCeeeccccccCcccCCH-----HHHHHHHHHHHHHHHHhhCCcceEE--EEcCCCHHHHHHHHHHHHH-cC
Confidence 45567899999 853 332222222 4568888888888776676654433 333 445788777777765 78
Q ss_pred CCc
Q psy969 80 PDW 82 (106)
Q Consensus 80 a~w 82 (106)
++-
T Consensus 224 ad~ 226 (367)
T cd08205 224 ANA 226 (367)
T ss_pred CCE
Confidence 865
No 275
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=48.76 E-value=30 Score=26.42 Aligned_cols=25 Identities=28% Similarity=0.416 Sum_probs=19.6
Q ss_pred ceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969 52 KIGLKPAGGISTFEDSVRWIYLVLIMLGPD 81 (106)
Q Consensus 52 ~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~ 81 (106)
++.|=+||||++.+|..++.+ .|.+
T Consensus 191 ~~~viasGGv~~~~Dl~~l~~-----~G~~ 215 (229)
T PF00977_consen 191 NIPVIASGGVRSLEDLRELKK-----AGID 215 (229)
T ss_dssp SSEEEEESS--SHHHHHHHHH-----TTEC
T ss_pred CCCEEEecCCCCHHHHHHHHH-----CCCc
Confidence 577889999999999999997 5763
No 276
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=48.70 E-value=16 Score=27.05 Aligned_cols=23 Identities=35% Similarity=0.437 Sum_probs=18.9
Q ss_pred EeecCCCCCHHHHHHHHHHHHhhCCCCcc
Q psy969 55 LKPAGGISTFEDSVRWIYLVLIMLGPDWL 83 (106)
Q Consensus 55 iKaaGGIrt~~~a~~~i~l~~~~lGa~w~ 83 (106)
||. -||++.+++...++ +|++|+
T Consensus 1 vKi-CGi~~~ed~~~a~~-----~Gvd~i 23 (203)
T cd00405 1 VKI-CGITTLEDALAAAE-----AGADAI 23 (203)
T ss_pred CEE-CCCCCHHHHHHHHH-----cCCCEE
Confidence 466 47999999999999 688765
No 277
>PRK09333 30S ribosomal protein S19e; Provisional
Probab=48.67 E-value=13 Score=27.87 Aligned_cols=15 Identities=13% Similarity=0.135 Sum_probs=11.6
Q ss_pred CCc-ccCCCCCCCCCC
Q psy969 12 SNF-RTLHGRGPDSTS 26 (106)
Q Consensus 12 adF-KTSTG~~~~gat 26 (106)
+|| ||++++.-.+-+
T Consensus 32 ~~~vKTg~~kE~~P~~ 47 (150)
T PRK09333 32 AAFVKTGVHKERPPEQ 47 (150)
T ss_pred hhhhcccccccCCCCC
Confidence 689 999998755444
No 278
>PRK02714 O-succinylbenzoate synthase; Provisional
Probab=48.24 E-value=59 Score=25.99 Aligned_cols=44 Identities=11% Similarity=0.111 Sum_probs=30.0
Q ss_pred HHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969 36 IIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD 81 (106)
Q Consensus 36 ~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~ 81 (106)
..|.+.++++.+.--..++||+ |..+.++-++.+.++++.+|.+
T Consensus 120 ~~~~~~a~~~~~~G~~~~KvKv--G~~~~~~d~~~v~air~~~g~~ 163 (320)
T PRK02714 120 EAALQQWQTLWQQGYRTFKWKI--GVDPLEQELKIFEQLLERLPAG 163 (320)
T ss_pred HHHHHHHHHHHHcCCCEEEEEE--CCCChHHHHHHHHHHHHhcCCC
Confidence 3355555555433224588887 6778888888888889989865
No 279
>PF05582 Peptidase_U57: YabG peptidase U57; InterPro: IPR008764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belong to MEROPS peptidase family U57 (clan U-). The type example is the YabG protein of Bacillus subtilis. This is a protease involved in the synthesis and maturation of the spore coat proteins SpoIVA and YrbA of B. subtilis [].
Probab=47.44 E-value=15 Score=30.21 Aligned_cols=51 Identities=27% Similarity=0.356 Sum_probs=30.2
Q ss_pred chhh----HHHhhCCCcccCCCCC------CC------C-CCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCC
Q psy969 2 GRPR----KVAFKGSNFRTLHGRG------PD------S-TSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGIST 63 (106)
Q Consensus 2 ~~~~----iai~aGadFKTSTG~~------~~------g-at~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt 63 (106)
|||+ .-++|||+|-+|-+.. |+ . ++ ...+--+.++|+ .--.|+|--|||.|
T Consensus 207 GACQS~fEall~AGANFASSP~RVlIHalDPV~I~eKia~T~-----i~~~V~i~dvi~------~TiTG~~GiGGieT 274 (287)
T PF05582_consen 207 GACQSHFEALLEAGANFASSPKRVLIHALDPVFIVEKIAYTP-----IDETVSIWDVIE------NTITGFKGIGGIET 274 (287)
T ss_pred chhHHHHHHHHHcCccccCCccceEEeccCcceeEeeeeccc-----ccceecHHHHHh------hcccCCCCcCceec
Confidence 7776 5577999996677643 11 1 11 222222334442 24578899999987
No 280
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=46.85 E-value=95 Score=24.41 Aligned_cols=50 Identities=10% Similarity=-0.015 Sum_probs=33.1
Q ss_pred chHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCCccCCCceeEe
Q psy969 32 NTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIG 91 (106)
Q Consensus 32 ~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~w~~~~~~RiG 91 (106)
.+-|+.+++.++ ..+-++-|=+=|||+ .+.+..+.+ +|+|++-.+..-|+
T Consensus 163 l~KI~~lr~~~~----~~~~~~~IeVDGGI~-~~ti~~l~~-----aGaD~~V~GSalF~ 212 (228)
T PRK08091 163 LDRVIQVENRLG----NRRVEKLISIDGSMT-LELASYLKQ-----HQIDWVVSGSALFS 212 (228)
T ss_pred HHHHHHHHHHHH----hcCCCceEEEECCCC-HHHHHHHHH-----CCCCEEEEChhhhC
Confidence 445555554443 234467788899998 678888888 79986555544454
No 281
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=46.43 E-value=38 Score=24.37 Aligned_cols=24 Identities=25% Similarity=0.306 Sum_probs=20.0
Q ss_pred ceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969 52 KIGLKPAGGISTFEDSVRWIYLVLIMLGPD 81 (106)
Q Consensus 52 ~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~ 81 (106)
++.|=++|||+. +++.++++ .|++
T Consensus 166 ~~pi~v~GGI~~-env~~~~~-----~gad 189 (211)
T cd00429 166 NLLIEVDGGINL-ETIPLLAE-----AGAD 189 (211)
T ss_pred CeEEEEECCCCH-HHHHHHHH-----cCCC
Confidence 466778999996 99999998 6886
No 282
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=46.13 E-value=68 Score=25.68 Aligned_cols=20 Identities=20% Similarity=0.132 Sum_probs=17.8
Q ss_pred eeEeecCCCCCHHHHHHHHH
Q psy969 53 IGLKPAGGISTFEDSVRWIY 72 (106)
Q Consensus 53 vgiKaaGGIrt~~~a~~~i~ 72 (106)
+-|=+.|+|+|.+++.++++
T Consensus 291 iPVi~~G~i~t~~~a~~~l~ 310 (336)
T cd02932 291 IPVIAVGLITDPEQAEAILE 310 (336)
T ss_pred CCEEEeCCCCCHHHHHHHHH
Confidence 55668899999999999999
No 283
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=46.08 E-value=1.1e+02 Score=23.93 Aligned_cols=48 Identities=13% Similarity=0.023 Sum_probs=28.2
Q ss_pred hHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCCccC
Q psy969 33 TCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLN 84 (106)
Q Consensus 33 ~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~w~~ 84 (106)
.+.+.+.+.+++.++..+-.+.+|.+..+ ++..++.+.++ -+|++.++
T Consensus 140 ~~~~~~~eiv~~vr~~~~~pv~vKi~~~~---~~~~~~a~~l~-~~G~d~i~ 187 (300)
T TIGR01037 140 QDPELSADVVKAVKDKTDVPVFAKLSPNV---TDITEIAKAAE-EAGADGLT 187 (300)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEECCCCh---hhHHHHHHHHH-HcCCCEEE
Confidence 34445555555555556678999998654 44444443322 27888764
No 284
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=45.86 E-value=64 Score=27.81 Aligned_cols=66 Identities=14% Similarity=0.001 Sum_probs=38.5
Q ss_pred hHHHhhCCCc--ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCCc
Q psy969 5 RKVAFKGSNF--RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDW 82 (106)
Q Consensus 5 ~iai~aGadF--KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~w 82 (106)
+.|+++|++. -......+-... ++..+-+... .++.+-+=+-+||+|.+|+..+.. |+
T Consensus 173 ~~al~~~a~iiGiNnRdL~t~~vd-----~~~~~~l~~~-------ip~~~~~vseSGI~t~~d~~~~~~------~~-- 232 (454)
T PRK09427 173 ERAIALGAKVIGINNRNLRDLSID-----LNRTRELAPL-------IPADVIVISESGIYTHAQVRELSP------FA-- 232 (454)
T ss_pred HHHHhCCCCEEEEeCCCCccceEC-----HHHHHHHHhh-------CCCCcEEEEeCCCCCHHHHHHHHh------cC--
Confidence 4567777777 444443332333 4444444433 344443333478999999998744 44
Q ss_pred cCCCceeEecc
Q psy969 83 LNKDLFRIGAS 93 (106)
Q Consensus 83 ~~~~~~RiGtS 93 (106)
+.+-||+|
T Consensus 233 ---davLiG~~ 240 (454)
T PRK09427 233 ---NGFLIGSS 240 (454)
T ss_pred ---CEEEECHH
Confidence 46889986
No 285
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=45.29 E-value=67 Score=26.38 Aligned_cols=27 Identities=30% Similarity=0.425 Sum_probs=23.6
Q ss_pred cCCceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969 49 SGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD 81 (106)
Q Consensus 49 ~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~ 81 (106)
..+++-+-+|||| |++...+|-. .|.|
T Consensus 231 ~~~~~~lEaSGgI-t~~ni~~yA~-----tGVD 257 (280)
T COG0157 231 LAGRALLEASGGI-TLENIREYAE-----TGVD 257 (280)
T ss_pred cCCceEEEEeCCC-CHHHHHHHhh-----cCCC
Confidence 4678999999999 6889999998 7997
No 286
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=45.15 E-value=47 Score=25.62 Aligned_cols=63 Identities=13% Similarity=0.066 Sum_probs=35.7
Q ss_pred hhHHHhhCCCc-ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCCc
Q psy969 4 PRKVAFKGSNF-RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDW 82 (106)
Q Consensus 4 ~~iai~aGadF-KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~w 82 (106)
-+..++.|.|- =||=|..+. .+.+..+++-+++ .++++.|=+.|||+.-. +..+++. .|..|
T Consensus 133 l~~L~~lG~~rVLTSGg~~~a--------~~g~~~L~~lv~~----a~~~i~Im~GgGv~~~n-v~~l~~~----tg~~~ 195 (201)
T PF03932_consen 133 LEQLIELGFDRVLTSGGAPTA--------LEGIENLKELVEQ----AKGRIEIMPGGGVRAEN-VPELVEE----TGVRE 195 (201)
T ss_dssp HHHHHHHT-SEEEESTTSSST--------TTCHHHHHHHHHH----HTTSSEEEEESS--TTT-HHHHHHH----HT-SE
T ss_pred HHHHHhcCCCEEECCCCCCCH--------HHHHHHHHHHHHH----cCCCcEEEecCCCCHHH-HHHHHHh----hCCeE
Confidence 34567789998 898775332 3344444443332 36889999999998754 3344442 47654
Q ss_pred c
Q psy969 83 L 83 (106)
Q Consensus 83 ~ 83 (106)
+
T Consensus 196 ~ 196 (201)
T PF03932_consen 196 I 196 (201)
T ss_dssp E
T ss_pred E
Confidence 4
No 287
>PTZ00411 transaldolase-like protein; Provisional
Probab=45.05 E-value=1.5e+02 Score=24.75 Aligned_cols=31 Identities=19% Similarity=0.161 Sum_probs=23.9
Q ss_pred HHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969 43 KHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD 81 (106)
Q Consensus 43 ~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~ 81 (106)
.+|++..+-+..|.+| .+|+.+|..++ +|++
T Consensus 220 ~~~~k~~g~~T~Im~A-SfRn~~qi~~l-------aG~D 250 (333)
T PTZ00411 220 YNYYKKHGYKTIVMGA-SFRNTGEILEL-------AGCD 250 (333)
T ss_pred HHHHHHcCCCeEEEec-ccCCHHHHHHH-------HCCC
Confidence 3455666788999997 49999998873 4997
No 288
>PRK08005 epimerase; Validated
Probab=45.01 E-value=66 Score=24.86 Aligned_cols=32 Identities=16% Similarity=0.075 Sum_probs=23.9
Q ss_pred eEeecCCCCCHHHHHHHHHHHHhhCCCCccCCCceeEe
Q psy969 54 GLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIG 91 (106)
Q Consensus 54 giKaaGGIrt~~~a~~~i~l~~~~lGa~w~~~~~~RiG 91 (106)
.|=+=|||+ .+.+..+.+ +|++++-.+..-|+
T Consensus 165 ~I~VDGGI~-~~~i~~l~~-----aGad~~V~GsaiF~ 196 (210)
T PRK08005 165 ECWADGGIT-LRAARLLAA-----AGAQHLVIGRALFT 196 (210)
T ss_pred CEEEECCCC-HHHHHHHHH-----CCCCEEEEChHhhC
Confidence 588889998 777888888 79986555555454
No 289
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=44.99 E-value=1.3e+02 Score=23.83 Aligned_cols=36 Identities=17% Similarity=0.052 Sum_probs=24.3
Q ss_pred chHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHH
Q psy969 32 NTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIY 72 (106)
Q Consensus 32 ~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~ 72 (106)
++.+..+.+.++++ .+.++- +-+||++.+++.++.+
T Consensus 185 ~~~~~~~i~~vk~~---~~~pv~--vGfGI~~~e~v~~~~~ 220 (258)
T PRK13111 185 AADLAELVARLKAH---TDLPVA--VGFGISTPEQAAAIAA 220 (258)
T ss_pred CccHHHHHHHHHhc---CCCcEE--EEcccCCHHHHHHHHH
Confidence 44555555555543 444444 4789999999999998
No 290
>PRK07360 FO synthase subunit 2; Reviewed
Probab=44.82 E-value=1.1e+02 Score=25.04 Aligned_cols=65 Identities=22% Similarity=0.128 Sum_probs=39.5
Q ss_pred hhHHHhhCCCc--ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEee-----------cCCCCCHHHHHHH
Q psy969 4 PRKVAFKGSNF--RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKP-----------AGGISTFEDSVRW 70 (106)
Q Consensus 4 ~~iai~aGadF--KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKa-----------aGGIrt~~~a~~~ 70 (106)
++.+.+.|+.- =+ .|..|.... .+.+.-+.+.|+ +.. +.+.+++ +.|..+.++..++
T Consensus 100 a~~a~~~G~~~i~l~-~G~~p~~~~-----~e~~~~~i~~ik---~~~-~~i~i~a~s~~ei~~~~~~~G~~~~e~l~~L 169 (371)
T PRK07360 100 AAEAVKRGATEVCIQ-GGLHPAADS-----LEFYLEILEAIK---EEF-PDIHLHAFSPMEVYFAAREDGLSYEEVLKAL 169 (371)
T ss_pred HHHHHhCCCCEEEEc-cCCCCCCCc-----HHHHHHHHHHHH---HhC-CCcceeeCCHHHHHHHHhhcCCCHHHHHHHH
Confidence 34556677776 44 565543333 333333444443 222 5688887 4689998889999
Q ss_pred HHHHHhhCCCCcc
Q psy969 71 IYLVLIMLGPDWL 83 (106)
Q Consensus 71 i~l~~~~lGa~w~ 83 (106)
.+ +|.+.+
T Consensus 170 ke-----AGld~~ 177 (371)
T PRK07360 170 KD-----AGLDSM 177 (371)
T ss_pred HH-----cCCCcC
Confidence 88 798743
No 291
>COG5564 Predicted TIM-barrel enzyme, possibly a dioxygenase [General function prediction only]
Probab=44.71 E-value=47 Score=27.13 Aligned_cols=79 Identities=22% Similarity=0.114 Sum_probs=51.0
Q ss_pred hhHHHhhCCCc-ccCCCCCCCC---CCC---CCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHh
Q psy969 4 PRKVAFKGSNF-RTLHGRGPDS---TSY---GNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLI 76 (106)
Q Consensus 4 ~~iai~aGadF-KTSTG~~~~g---at~---~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~ 76 (106)
++.+.++|||. .---|+...| +++ -..|.+-+++..++++-. .++-+-+=.-|=|.++||+...++..
T Consensus 169 Aqa~~~aGadiiv~hmg~ttgG~Igar~~~Sl~~~vel~~~~~~aar~v---~kd~i~l~~GGPi~~p~da~yi~d~c-- 243 (276)
T COG5564 169 AQAMTKAGADIIVAHMGLTTGGLIGARSALSLADCVELIELAAEAARGV---RKDVIPLCHGGPISMPEDARYILDRC-- 243 (276)
T ss_pred HHHHHHcCcceeeecccccccceeccccccCHHHHHHHHHHHHHHHhhh---hhceeeeccCCCcCCchhhHHHHhhC--
Confidence 45677899999 7777765433 332 345666677777766543 22334444545699999999988853
Q ss_pred hCCCCccCCCceeEeccc
Q psy969 77 MLGPDWLNKDLFRIGASS 94 (106)
Q Consensus 77 ~lGa~w~~~~~~RiGtSs 94 (106)
-|++ -.+|+||
T Consensus 244 -~~~~------gfygass 254 (276)
T COG5564 244 -PGCD------GFYGASS 254 (276)
T ss_pred -CCCC------cccccch
Confidence 3443 4678887
No 292
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=44.41 E-value=1.2e+02 Score=26.14 Aligned_cols=60 Identities=17% Similarity=0.261 Sum_probs=37.7
Q ss_pred hhhHHHhhCCCc---ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCC
Q psy969 3 RPRKVAFKGSNF---RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLG 79 (106)
Q Consensus 3 ~~~iai~aGadF---KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lG 79 (106)
+.+..+++|+|+ -++.|. ++.+.-|.+.|++ .. +.+-|=+ |-+-|.++++++++ +|
T Consensus 229 ra~~Lv~aGVd~i~~D~a~g~-----------~~~~~~~i~~i~~---~~-~~~~vi~-g~~~t~~~~~~l~~-----~G 287 (475)
T TIGR01303 229 KAKALLDAGVDVLVIDTAHGH-----------QVKMISAIKAVRA---LD-LGVPIVA-GNVVSAEGVRDLLE-----AG 287 (475)
T ss_pred HHHHHHHhCCCEEEEeCCCCC-----------cHHHHHHHHHHHH---HC-CCCeEEE-eccCCHHHHHHHHH-----hC
Confidence 345667789998 455543 2233333344432 22 3455544 66999999999999 79
Q ss_pred CCcc
Q psy969 80 PDWL 83 (106)
Q Consensus 80 a~w~ 83 (106)
++.+
T Consensus 288 ~d~i 291 (475)
T TIGR01303 288 ANII 291 (475)
T ss_pred CCEE
Confidence 9744
No 293
>PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=44.40 E-value=33 Score=26.04 Aligned_cols=22 Identities=32% Similarity=0.185 Sum_probs=18.6
Q ss_pred EeecCCCCCHHHHHHHHHHHHhhCCCCc
Q psy969 55 LKPAGGISTFEDSVRWIYLVLIMLGPDW 82 (106)
Q Consensus 55 iKaaGGIrt~~~a~~~i~l~~~~lGa~w 82 (106)
||. -||++.+||+...+ +|+|+
T Consensus 3 vKI-CGit~~eda~~~~~-----~GaD~ 24 (207)
T PRK13958 3 LKF-CGFTTIKDVTAASQ-----LPIDA 24 (207)
T ss_pred EEE-cCCCcHHHHHHHHH-----cCCCE
Confidence 788 46999999999999 68775
No 294
>cd03313 enolase Enolase: Enolases are homodimeric enzymes that catalyse the reversible dehydration of 2-phospho-D-glycerate to phosphoenolpyruvate as part of the glycolytic and gluconeogenesis pathways. The reaction is facilitated by the presence of metal ions.
Probab=43.74 E-value=68 Score=26.82 Aligned_cols=52 Identities=19% Similarity=0.110 Sum_probs=34.1
Q ss_pred chHHHHHHHHHHHHhhhcCC--ceeEeec----------------CCCCCHHHHHHHHHHHHhhCCCCcc
Q psy969 32 NTCGIIMCSAIKHFHKLSGK--KIGLKPA----------------GGISTFEDSVRWIYLVLIMLGPDWL 83 (106)
Q Consensus 32 ~~~v~lm~~~i~~~~~~~~~--~vgiKaa----------------GGIrt~~~a~~~i~l~~~~lGa~w~ 83 (106)
.+.++++++++++..-..++ .++|-++ +--.|.+++++|+....+-.+..|+
T Consensus 213 ~~~l~~i~eAi~~~g~~~G~dv~i~lD~aas~~~~~~~y~~~~~~~~~~t~~eai~~~~~l~e~~~i~~i 282 (408)
T cd03313 213 EEALDLLVEAIEKAGYEPGKKIAIALDVAASEFYDEGKYVYDSDEGKKLTSEELIDYYKELVKKYPIVSI 282 (408)
T ss_pred HHHHHHHHHHHHHhcCCCCCeEEEEEehhhhhhcccCcceeccCCCcccCHHHHHHHHHHHHHhCCcEEE
Confidence 45688999998654211222 5666664 4457889999987765455777786
No 295
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=43.74 E-value=84 Score=25.21 Aligned_cols=21 Identities=24% Similarity=0.170 Sum_probs=18.9
Q ss_pred ceeEeecCCCCCHHHHHHHHH
Q psy969 52 KIGLKPAGGISTFEDSVRWIY 72 (106)
Q Consensus 52 ~vgiKaaGGIrt~~~a~~~i~ 72 (106)
++-|=+.|+|+|.+++.++++
T Consensus 292 ~iPVi~~G~i~t~~~a~~~l~ 312 (338)
T cd04733 292 KTPLMVTGGFRTRAAMEQALA 312 (338)
T ss_pred CCCEEEeCCCCCHHHHHHHHH
Confidence 466788999999999999999
No 296
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=42.63 E-value=42 Score=26.16 Aligned_cols=23 Identities=22% Similarity=0.189 Sum_probs=20.1
Q ss_pred CceeEeecCCCCCHHHHHHHHHH
Q psy969 51 KKIGLKPAGGISTFEDSVRWIYL 73 (106)
Q Consensus 51 ~~vgiKaaGGIrt~~~a~~~i~l 73 (106)
..+-|=+||||++.+|..++.++
T Consensus 187 ~~~pviasGGv~s~~Dl~~l~~~ 209 (241)
T PRK14114 187 AEVKVFAAGGISSENSLKTAQRV 209 (241)
T ss_pred CCCCEEEECCCCCHHHHHHHHhc
Confidence 36788999999999999999873
No 297
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=42.54 E-value=97 Score=24.29 Aligned_cols=31 Identities=13% Similarity=0.291 Sum_probs=19.0
Q ss_pred CceeEeecCCCCCHHHHHHHHHHHHhhCCCCcc
Q psy969 51 KKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWL 83 (106)
Q Consensus 51 ~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~w~ 83 (106)
.++.+++-+|-. .++|+++.+..++. +..|+
T Consensus 178 ~~l~vD~n~~~~-~~~A~~~~~~l~~~-~l~~i 208 (316)
T cd03319 178 ARLRVDANQGWT-PEEAVELLRELAEL-GVELI 208 (316)
T ss_pred CeEEEeCCCCcC-HHHHHHHHHHHHhc-CCCEE
Confidence 356666665544 46677776665543 66666
No 298
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=42.18 E-value=1.6e+02 Score=23.58 Aligned_cols=69 Identities=12% Similarity=0.091 Sum_probs=37.8
Q ss_pred hhHHHhhCCCc-ccCCCCCC-----CCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhh
Q psy969 4 PRKVAFKGSNF-RTLHGRGP-----DSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIM 77 (106)
Q Consensus 4 ~~iai~aGadF-KTSTG~~~-----~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~ 77 (106)
++.+.++|+|+ --.-+..+ .+.+ ++ ..+.+.+++..+..+-.|.+|.++++.+.++..+.++.
T Consensus 120 a~~~~~agad~ielN~scpp~~~~~~g~~-----~~--~~~~eil~~v~~~~~iPV~vKl~p~~~~~~~~a~~l~~---- 188 (334)
T PRK07565 120 ARQIEQAGADALELNIYYLPTDPDISGAE-----VE--QRYLDILRAVKSAVSIPVAVKLSPYFSNLANMAKRLDA---- 188 (334)
T ss_pred HHHHHHcCCCEEEEeCCCCCCCCCCcccc-----HH--HHHHHHHHHHHhccCCcEEEEeCCCchhHHHHHHHHHH----
Confidence 34566779998 54322211 1122 22 22334444444446678999998877555554444332
Q ss_pred CCCCcc
Q psy969 78 LGPDWL 83 (106)
Q Consensus 78 lGa~w~ 83 (106)
.|++.+
T Consensus 189 ~G~dgI 194 (334)
T PRK07565 189 AGADGL 194 (334)
T ss_pred cCCCeE
Confidence 688875
No 299
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=41.17 E-value=81 Score=25.65 Aligned_cols=54 Identities=17% Similarity=0.129 Sum_probs=35.2
Q ss_pred hhHHHhhCCCc-ccCCCCCCC---CCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHH
Q psy969 4 PRKVAFKGSNF-RTLHGRGPD---STSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIY 72 (106)
Q Consensus 4 ~~iai~aGadF-KTSTG~~~~---gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~ 72 (106)
++...+.|+|| -.|.|.... +.. .+.++.+++. + ++-|=++|||+ .+++.++++
T Consensus 247 ~~~l~~~g~d~i~vs~g~~~~~~~~~~-----~~~~~~ik~~-------~--~ipvi~~G~i~-~~~a~~~l~ 304 (338)
T cd02933 247 AKELNKRGLAYLHLVEPRVAGNPEDQP-----PDFLDFLRKA-------F--KGPLIAAGGYD-AESAEAALA 304 (338)
T ss_pred HHHHHHcCCcEEEEecCCCCCcccccc-----hHHHHHHHHH-------c--CCCEEEECCCC-HHHHHHHHH
Confidence 34556779999 777773211 222 3444444443 2 35677899998 999999998
No 300
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=41.15 E-value=46 Score=26.68 Aligned_cols=22 Identities=23% Similarity=0.157 Sum_probs=19.2
Q ss_pred CceeEeecCCCCCHHHHHHHHH
Q psy969 51 KKIGLKPAGGISTFEDSVRWIY 72 (106)
Q Consensus 51 ~~vgiKaaGGIrt~~~a~~~i~ 72 (106)
..+-|=|||||++++|..++-+
T Consensus 200 ~~ipVIASGGv~s~eDi~~l~~ 221 (253)
T TIGR02129 200 SPIPITYAGGAKSIDDLDLVDE 221 (253)
T ss_pred CCCCEEEECCCCCHHHHHHHHH
Confidence 4678899999999999998855
No 301
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=40.83 E-value=98 Score=23.79 Aligned_cols=43 Identities=21% Similarity=0.231 Sum_probs=28.5
Q ss_pred chHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCCccC
Q psy969 32 NTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLN 84 (106)
Q Consensus 32 ~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~w~~ 84 (106)
++.++.+++.+++ .+..+-|=+-|||+ .+.+.++++ +|++++-
T Consensus 151 lekI~~l~~~~~~----~~~~~~I~vdGGI~-~eni~~l~~-----aGAd~vV 193 (220)
T PRK08883 151 LDKLRAVRKMIDE----SGRDIRLEIDGGVK-VDNIREIAE-----AGADMFV 193 (220)
T ss_pred HHHHHHHHHHHHh----cCCCeeEEEECCCC-HHHHHHHHH-----cCCCEEE
Confidence 4445555444321 23346677799999 889999999 7997543
No 302
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=40.63 E-value=56 Score=26.94 Aligned_cols=37 Identities=27% Similarity=0.134 Sum_probs=28.4
Q ss_pred chHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCCcc
Q psy969 32 NTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWL 83 (106)
Q Consensus 32 ~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~w~ 83 (106)
.++++-+++. .+.++.|| ||.+.++|....+ +|++.+
T Consensus 202 ~~~i~~l~~~-------~~~PvivK---gv~~~~dA~~a~~-----~G~d~I 238 (344)
T cd02922 202 WDDIKWLRKH-------TKLPIVLK---GVQTVEDAVLAAE-----YGVDGI 238 (344)
T ss_pred HHHHHHHHHh-------cCCcEEEE---cCCCHHHHHHHHH-----cCCCEE
Confidence 4455555443 57889999 7889999999999 799875
No 303
>KOG1606|consensus
Probab=40.32 E-value=42 Score=27.42 Aligned_cols=25 Identities=32% Similarity=0.321 Sum_probs=20.7
Q ss_pred eeEeecCCCCCHHHHHHHHHHHHhhCCCCc
Q psy969 53 IGLKPAGGISTFEDSVRWIYLVLIMLGPDW 82 (106)
Q Consensus 53 vgiKaaGGIrt~~~a~~~i~l~~~~lGa~w 82 (106)
+-==+||||-|+.||.-|++ ||.|=
T Consensus 210 VV~FAaGGvaTPADAALmMQ-----LGCdG 234 (296)
T KOG1606|consen 210 VVNFAAGGVATPADAALMMQ-----LGCDG 234 (296)
T ss_pred eEEecccCcCChhHHHHHHH-----cCCCe
Confidence 33347899999999999999 79973
No 304
>PLN02334 ribulose-phosphate 3-epimerase
Probab=39.77 E-value=42 Score=25.37 Aligned_cols=25 Identities=12% Similarity=0.207 Sum_probs=20.7
Q ss_pred eeEeecCCCCCHHHHHHHHHHHHhhCCCCcc
Q psy969 53 IGLKPAGGISTFEDSVRWIYLVLIMLGPDWL 83 (106)
Q Consensus 53 vgiKaaGGIrt~~~a~~~i~l~~~~lGa~w~ 83 (106)
+-|=+.||| |.+++.++++ +|++.+
T Consensus 175 ~~I~a~GGI-~~e~i~~l~~-----aGad~v 199 (229)
T PLN02334 175 LDIEVDGGV-GPSTIDKAAE-----AGANVI 199 (229)
T ss_pred CcEEEeCCC-CHHHHHHHHH-----cCCCEE
Confidence 467789999 7999999999 798743
No 305
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=39.73 E-value=2e+02 Score=24.29 Aligned_cols=32 Identities=22% Similarity=0.256 Sum_probs=23.9
Q ss_pred HHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969 42 IKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD 81 (106)
Q Consensus 42 i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~ 81 (106)
|.+|++..+-+..|.+|. +|+.+|..++ +|++
T Consensus 213 i~~~~~~~~~~T~Im~AS-fRn~~~v~~l-------aG~d 244 (391)
T PRK12309 213 IYNYYKKFGYKTEVMGAS-FRNIGEIIEL-------AGCD 244 (391)
T ss_pred HHHHHHhcCCCcEEEecc-cCCHHHHHHH-------HCCC
Confidence 345555567788999874 9999999872 4987
No 306
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=39.35 E-value=1.2e+02 Score=24.54 Aligned_cols=62 Identities=15% Similarity=0.142 Sum_probs=34.5
Q ss_pred hHHHhhCCCc-ccCCCCCCCCC-CCCCCCch--HHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHH
Q psy969 5 RKVAFKGSNF-RTLHGRGPDST-SYGNVCNT--CGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIY 72 (106)
Q Consensus 5 ~iai~aGadF-KTSTG~~~~ga-t~~~~~~~--~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~ 72 (106)
+...++|+|| -.|.||..... +....-++ ....+ +.++ +.+ ++-|=+.|+|++.+++.++++
T Consensus 231 ~~Le~~G~d~i~vs~g~~e~~~~~~~~~~~~~~~~~~~-~~ik---~~v--~iPVi~~G~i~~~~~a~~~i~ 296 (353)
T cd02930 231 KALEAAGADILNTGIGWHEARVPTIATSVPRGAFAWAT-AKLK---RAV--DIPVIASNRINTPEVAERLLA 296 (353)
T ss_pred HHHHHcCCCEEEeCCCcCCCCCccccccCCchhhHHHH-HHHH---HhC--CCCEEEcCCCCCHHHHHHHHH
Confidence 4456689999 77888742111 10000011 12222 2222 222 355667899999999999998
No 307
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=39.12 E-value=57 Score=26.18 Aligned_cols=21 Identities=24% Similarity=0.379 Sum_probs=19.4
Q ss_pred ceeEeecCCCCCHHHHHHHHH
Q psy969 52 KIGLKPAGGISTFEDSVRWIY 72 (106)
Q Consensus 52 ~vgiKaaGGIrt~~~a~~~i~ 72 (106)
.+-|=+||||++.+|...+.+
T Consensus 191 ~ipviaSGGv~s~~Di~~l~~ 211 (241)
T COG0106 191 DIPVIASGGVSSLDDIKALKE 211 (241)
T ss_pred CcCEEEecCcCCHHHHHHHHh
Confidence 688899999999999999988
No 308
>cd03329 MR_like_4 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 4. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=39.09 E-value=1e+02 Score=24.89 Aligned_cols=46 Identities=20% Similarity=0.216 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969 35 GIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD 81 (106)
Q Consensus 35 v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~ 81 (106)
.+.+.+.++++.+.-=..++||. |+...+++-++.++.+++.+|.+
T Consensus 144 ~~~~~~~a~~~~~~Gf~~~Kik~-~~~~~~~~di~~i~~vR~~~G~~ 189 (368)
T cd03329 144 PEAYADFAEECKALGYRAIKLHP-WGPGVVRRDLKACLAVREAVGPD 189 (368)
T ss_pred HHHHHHHHHHHHHcCCCEEEEec-CCchhHHHHHHHHHHHHHHhCCC
Confidence 33444444444332112345553 22333677788888888888865
No 309
>TIGR02855 spore_yabG sporulation peptidase YabG. Members of this family are the protein YabG, demonstrated for Bacillus subtilis to be an endopeptidase able to release N-terminal peptides from a number of sporulation proteins, including CotT, CotF, and SpoIVA. It appears to be expressed under control of sigma-K.
Probab=38.73 E-value=26 Score=28.89 Aligned_cols=19 Identities=26% Similarity=0.408 Sum_probs=14.0
Q ss_pred chhh----HHHhhCCCcccCCCC
Q psy969 2 GRPR----KVAFKGSNFRTLHGR 20 (106)
Q Consensus 2 ~~~~----iai~aGadFKTSTG~ 20 (106)
|||+ ..++|||+|-+|-+.
T Consensus 206 GACQS~yEall~AGANFASSP~R 228 (283)
T TIGR02855 206 GACQSHFESLIRAGANFASSPSR 228 (283)
T ss_pred chhHHHHHHHHHcCccccCCccc
Confidence 7776 557899999666664
No 310
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=38.24 E-value=45 Score=25.94 Aligned_cols=24 Identities=25% Similarity=0.421 Sum_probs=19.8
Q ss_pred eeEeecCCCCCHHHHHHHHHHHHhhCCCCc
Q psy969 53 IGLKPAGGISTFEDSVRWIYLVLIMLGPDW 82 (106)
Q Consensus 53 vgiKaaGGIrt~~~a~~~i~l~~~~lGa~w 82 (106)
+.+|. .||++++||....+ +|+++
T Consensus 2 ~~vKI-CGlt~~eda~~a~~-----~gad~ 25 (208)
T COG0135 2 VKVKI-CGLTRLEDAKAAAK-----AGADY 25 (208)
T ss_pred CceEE-CCCCCHHHHHHHHH-----cCCCE
Confidence 45788 57999999999999 68863
No 311
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=37.92 E-value=1.6e+02 Score=23.02 Aligned_cols=32 Identities=13% Similarity=0.129 Sum_probs=24.2
Q ss_pred cCCceeEeecCCCCCHHHHHHHHHHHHhhCCCCccCCC
Q psy969 49 SGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKD 86 (106)
Q Consensus 49 ~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~w~~~~ 86 (106)
.+-.+-|=+=|||+ .+.+.++.+ +|++++-.+
T Consensus 166 ~~~~~~IeVDGGI~-~~~i~~~~~-----aGad~~V~G 197 (229)
T PRK09722 166 NGLEYLIEVDGSCN-QKTYEKLME-----AGADVFIVG 197 (229)
T ss_pred cCCCeEEEEECCCC-HHHHHHHHH-----cCCCEEEEC
Confidence 34468899999999 778888888 799754333
No 312
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=37.88 E-value=96 Score=26.29 Aligned_cols=67 Identities=19% Similarity=0.091 Sum_probs=40.0
Q ss_pred hhCCCc-ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCCccCCCc
Q psy969 9 FKGSNF-RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDL 87 (106)
Q Consensus 9 ~aGadF-KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~w~~~~~ 87 (106)
..+.|+ -=-||..|.+. .+..+.++.+++. ..++.|=++|||+ .++..++++ +|++++=-+.
T Consensus 297 ~~~vD~Vllht~vdp~~~---~~~~~kI~~ikk~--------~~~~~I~VdGGI~-~eti~~l~~-----aGADivVVGs 359 (391)
T PRK13307 297 KVKPDVVELHRGIDEEGT---EHAWGNIKEIKKA--------GGKILVAVAGGVR-VENVEEALK-----AGADILVVGR 359 (391)
T ss_pred hCCCCEEEEccccCCCcc---cchHHHHHHHHHh--------CCCCcEEEECCcC-HHHHHHHHH-----cCCCEEEEeH
Confidence 457787 66666655422 1223334433321 3467788999999 888888888 7997543333
Q ss_pred eeEec
Q psy969 88 FRIGA 92 (106)
Q Consensus 88 ~RiGt 92 (106)
.-+++
T Consensus 360 aIf~a 364 (391)
T PRK13307 360 AITKS 364 (391)
T ss_pred HHhCC
Confidence 33333
No 313
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=37.84 E-value=58 Score=27.31 Aligned_cols=27 Identities=44% Similarity=0.472 Sum_probs=23.6
Q ss_pred cCCceeEeecCCCCCHHHHHHHHHHHHhhCCCCcc
Q psy969 49 SGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWL 83 (106)
Q Consensus 49 ~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~w~ 83 (106)
.+..+-|| ||-+.++|+..++ +|++.+
T Consensus 235 ~~~pviiK---gV~~~eda~~a~~-----~G~d~I 261 (361)
T cd04736 235 WPHKLLVK---GIVTAEDAKRCIE-----LGADGV 261 (361)
T ss_pred CCCCEEEe---cCCCHHHHHHHHH-----CCcCEE
Confidence 57789999 6999999999999 799854
No 314
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=37.47 E-value=55 Score=25.02 Aligned_cols=19 Identities=21% Similarity=0.216 Sum_probs=16.6
Q ss_pred eEeecCCCCCHHHHHHHHH
Q psy969 54 GLKPAGGISTFEDSVRWIY 72 (106)
Q Consensus 54 giKaaGGIrt~~~a~~~i~ 72 (106)
-+-.-|||||++|+.++..
T Consensus 79 ~v~vgGGirs~e~~~~~~~ 97 (221)
T TIGR00734 79 ELIADCGVRSPEDLETLPF 97 (221)
T ss_pred cEEEcCccCCHHHHHHHHh
Confidence 4778899999999999965
No 315
>cd08210 RLP_RrRLP Ribulose bisphosphate carboxylase like proteins (RLPs) similar to R.rubrum RLP. RLP from Rhodospirillum rubrum plays a role in an uncharacterized sulfur salvage pathway and has been shown to catalyze a novel isomerization reaction that converts 5-methylthio-d-ribulose 1-phosphate to a 3:1 mixture of 1-methylthioxylulose 5-phosphate and 1-methylthioribulose 5-phosphate.
Probab=37.32 E-value=2.4e+02 Score=23.57 Aligned_cols=73 Identities=11% Similarity=0.058 Sum_probs=46.3
Q ss_pred hhHHHhhCCCc-ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCC-CCHHHHHHHHHHHHhhCCCC
Q psy969 4 PRKVAFKGSNF-RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGI-STFEDSVRWIYLVLIMLGPD 81 (106)
Q Consensus 4 ~~iai~aGadF-KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGI-rt~~~a~~~i~l~~~~lGa~ 81 (106)
+.-...+|+|| |---..+-. +. +|-.|-++...+++++..+.+++++.+=+ +| -+.+++++-.+.+++ +|++
T Consensus 147 ~~~~~~gGvD~IKdDe~l~~~-~~--~p~~eRv~~v~~av~~a~~eTG~~~~y~~--Nita~~~em~~ra~~a~~-~Ga~ 220 (364)
T cd08210 147 AYAFALGGIDIIKDDHGLADQ-PF--APFEERVKACQEAVAEANAETGGRTLYAP--NVTGPPTQLLERARFAKE-AGAG 220 (364)
T ss_pred HHHHHhcCCCeeecCccccCc-cC--CCHHHHHHHHHHHHHHHHhhcCCcceEEE--ecCCCHHHHHHHHHHHHH-cCCC
Confidence 34566789999 865443211 11 22255688999999988888888754433 34 235577666666655 7876
Q ss_pred c
Q psy969 82 W 82 (106)
Q Consensus 82 w 82 (106)
-
T Consensus 221 ~ 221 (364)
T cd08210 221 G 221 (364)
T ss_pred E
Confidence 4
No 316
>PRK00230 orotidine 5'-phosphate decarboxylase; Reviewed
Probab=36.23 E-value=73 Score=24.38 Aligned_cols=20 Identities=15% Similarity=0.066 Sum_probs=11.1
Q ss_pred CCCCccCCCceeEeccchHH
Q psy969 78 LGPDWLNKDLFRIGASSLLN 97 (106)
Q Consensus 78 lGa~w~~~~~~RiGtSs~~~ 97 (106)
.|++.+--|..-..++....
T Consensus 199 ~Gad~iVvGR~I~~a~dP~~ 218 (230)
T PRK00230 199 AGSDYIVVGRPITQAADPAA 218 (230)
T ss_pred cCCCEEEECCcccCCCCHHH
Confidence 68875555555555554443
No 317
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=36.09 E-value=82 Score=24.82 Aligned_cols=31 Identities=19% Similarity=0.216 Sum_probs=24.8
Q ss_pred ceeEeecCCCCCHHHHHHHHHHHHhhCCCCc-cCCCce
Q psy969 52 KIGLKPAGGISTFEDSVRWIYLVLIMLGPDW-LNKDLF 88 (106)
Q Consensus 52 ~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~w-~~~~~~ 88 (106)
++-|= +|=|=|.+|+.+.++ +|+++ ++|+..
T Consensus 64 ~~lIG-AGTVL~~~q~~~a~~-----aGa~fiVsP~~~ 95 (211)
T COG0800 64 EALIG-AGTVLNPEQARQAIA-----AGAQFIVSPGLN 95 (211)
T ss_pred ccEEc-cccccCHHHHHHHHH-----cCCCEEECCCCC
Confidence 55554 599999999999999 79987 377654
No 318
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=36.04 E-value=82 Score=26.38 Aligned_cols=36 Identities=17% Similarity=0.168 Sum_probs=29.8
Q ss_pred chHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969 32 NTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD 81 (106)
Q Consensus 32 ~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~ 81 (106)
++.++.+++. .++-|=.-+||.+.+||.+-++ +|++
T Consensus 238 p~~i~~~~e~---------~~vpVivdAGIg~~sda~~Ame-----lGad 273 (326)
T PRK11840 238 PYTIRLIVEG---------ATVPVLVDAGVGTASDAAVAME-----LGCD 273 (326)
T ss_pred HHHHHHHHHc---------CCCcEEEeCCCCCHHHHHHHHH-----cCCC
Confidence 7778887765 3477777789999999999999 7997
No 319
>TIGR00970 leuA_yeast 2-isopropylmalate synthase, yeast type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases as found in yeasts and in a minority of studied bacteria.
Probab=35.93 E-value=99 Score=27.25 Aligned_cols=72 Identities=15% Similarity=0.054 Sum_probs=51.1
Q ss_pred hhHHHhhCCCc--ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969 4 PRKVAFKGSNF--RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD 81 (106)
Q Consensus 4 ~~iai~aGadF--KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~ 81 (106)
+..|+++||+. =|..|. |.-.||.++|++-.++.. .|+.. || +++...++-++++++.|-.
T Consensus 255 slaAv~aGa~~v~gt~~G~---GERaGNa~le~lv~~L~~-----------~g~~t--~i-dl~~L~~~s~~v~~~~~~~ 317 (564)
T TIGR00970 255 AELGFLAGADRIEGCLFGN---GERTGNVDLVTLALNLYT-----------QGVSP--NL-DFSNLDEIRRTVEYCNKIP 317 (564)
T ss_pred HHHHHHhCCCEEEeecCcC---CccccCccHHHHHHHHHh-----------cCCCC--Cc-CHHHHHHHHHHHHHHhCCC
Confidence 45789999999 555553 454578889998887742 12322 44 5777777788888889976
Q ss_pred ccCCCceeEecc
Q psy969 82 WLNKDLFRIGAS 93 (106)
Q Consensus 82 w~~~~~~RiGtS 93 (106)
+.|+.-.+|.+
T Consensus 318 -i~~~~PivG~~ 328 (564)
T TIGR00970 318 -VHERHPYGGDL 328 (564)
T ss_pred -CCCCCCchhhh
Confidence 78888888865
No 320
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=35.91 E-value=1.6e+02 Score=20.86 Aligned_cols=76 Identities=12% Similarity=0.025 Sum_probs=46.1
Q ss_pred hhHHHhhCCCc--ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969 4 PRKVAFKGSNF--RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD 81 (106)
Q Consensus 4 ~~iai~aGadF--KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~ 81 (106)
.+.+.+.++|+ -+|+ .+++ ++.+..+.+.+++. ..+.+.|=+ ||....++..+|.+ +|.+
T Consensus 46 v~aa~e~~adii~iSsl----~~~~-----~~~~~~~~~~L~~~---g~~~i~viv-GG~~~~~~~~~l~~-----~Gvd 107 (132)
T TIGR00640 46 ARQAVEADVHVVGVSSL----AGGH-----LTLVPALRKELDKL---GRPDILVVV-GGVIPPQDFDELKE-----MGVA 107 (132)
T ss_pred HHHHHHcCCCEEEEcCc----hhhh-----HHHHHHHHHHHHhc---CCCCCEEEE-eCCCChHhHHHHHH-----CCCC
Confidence 35566778888 3332 2344 55555555555432 222455544 77777788888888 7997
Q ss_pred ccCCCceeEeccchHHHHHHHH
Q psy969 82 WLNKDLFRIGASSLLNNILQEL 103 (106)
Q Consensus 82 w~~~~~~RiGtSs~~~~l~~~l 103 (106)
.-|+..+-+..+.+.|
T Consensus 108 ------~~~~~gt~~~~i~~~l 123 (132)
T TIGR00640 108 ------EIFGPGTPIPESAIFL 123 (132)
T ss_pred ------EEECCCCCHHHHHHHH
Confidence 5577776666655544
No 321
>PLN02460 indole-3-glycerol-phosphate synthase
Probab=35.81 E-value=1.1e+02 Score=25.56 Aligned_cols=32 Identities=22% Similarity=0.149 Sum_probs=25.2
Q ss_pred ceeEeecCCCCCHHHHHHHHHHHHhhCCCCccCCCceeEecc
Q psy969 52 KIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGAS 93 (106)
Q Consensus 52 ~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~w~~~~~~RiGtS 93 (106)
.+-+-+-.||+|.+|+..+.. +|++ .+-||.|
T Consensus 288 ~~~~VsESGI~t~~Dv~~l~~-----~Gad-----AvLVGEs 319 (338)
T PLN02460 288 GIIVVGESGLFTPDDVAYVQN-----AGVK-----AVLVGES 319 (338)
T ss_pred CeEEEECCCCCCHHHHHHHHH-----CCCC-----EEEECHH
Confidence 344444479999999999999 6874 7888986
No 322
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=35.29 E-value=68 Score=27.10 Aligned_cols=37 Identities=24% Similarity=0.105 Sum_probs=28.5
Q ss_pred chHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCCcc
Q psy969 32 NTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWL 83 (106)
Q Consensus 32 ~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~w~ 83 (106)
-++++-+++. .+.++-+| ||-+.++|+..++ +|++.+
T Consensus 242 W~~i~~lr~~-------~~~pvivK---gV~~~~dA~~a~~-----~G~d~I 278 (383)
T cd03332 242 WEDLAFLREW-------TDLPIVLK---GILHPDDARRAVE-----AGVDGV 278 (383)
T ss_pred HHHHHHHHHh-------cCCCEEEe---cCCCHHHHHHHHH-----CCCCEE
Confidence 4555555443 57789999 7999999999999 799853
No 323
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=35.27 E-value=70 Score=25.26 Aligned_cols=29 Identities=34% Similarity=0.311 Sum_probs=23.8
Q ss_pred hhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCCcc
Q psy969 47 KLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWL 83 (106)
Q Consensus 47 ~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~w~ 83 (106)
+..+.++-+| +|.+.++|+...+ +|++++
T Consensus 169 ~~~~~pvivK---~v~s~~~a~~a~~-----~G~d~I 197 (299)
T cd02809 169 SQWKGPLILK---GILTPEDALRAVD-----AGADGI 197 (299)
T ss_pred HhcCCCEEEe---ecCCHHHHHHHHH-----CCCCEE
Confidence 3356788888 5799999999999 799986
No 324
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=34.98 E-value=1.5e+02 Score=24.69 Aligned_cols=21 Identities=24% Similarity=0.357 Sum_probs=19.3
Q ss_pred ceeEeecCCCCCHHHHHHHHH
Q psy969 52 KIGLKPAGGISTFEDSVRWIY 72 (106)
Q Consensus 52 ~vgiKaaGGIrt~~~a~~~i~ 72 (106)
++-+=++|+|++.++|.++++
T Consensus 288 ~~pvi~~G~i~~~~~Ae~~l~ 308 (363)
T COG1902 288 RIPVIAVGGINDPEQAEEILA 308 (363)
T ss_pred CCCEEEeCCCCCHHHHHHHHH
Confidence 377888999999999999999
No 325
>PF00697 PRAI: N-(5'phosphoribosyl)anthranilate (PRA) isomerase; InterPro: IPR001240 Indole-3-glycerol phosphate synthase (IGPS) (see IPR001468 from INTERPRO) catalyzes the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyzes N-(5-phosphoribosyl)anthranilate isomerase (PRAI) activity, the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (GATase) N-terminal domain (see IPR000991 from INTERPRO). Phosphoribosylanthranilate isomerase (PRAI) is monomeric and labile in most mesophilic microorganisms, but dimeric and stable in the hyperthermophile Thermotoga maritima (tPRAI) []. The comparison to the known 2.0 A structure of PRAI from Escherichia coli (ePRAI) shows that tPRAI has the complete TIM- or (beta alp ha)8-barrel fold, whereas helix alpha5 in ePRAI is replaced by a loop. The subunits of tPRAI associate via the N-terminal faces of their central beta-barrels. Two long, symmetry-related loops that protrude reciprocally into cavities of the other subunit provide for multiple hydrophobic interactions. Moreover, the side chains of the N-terminal methionines and the C-terminal leucines of both subunits are immobilized in a hydrophobic cluster, and the number of salt bridges is increased in tPRAI. These features appear to be mainly responsible for the high thermostability of tPRAI []. ; GO: 0004640 phosphoribosylanthranilate isomerase activity, 0006568 tryptophan metabolic process; PDB: 1V5X_A 1PII_A 1JCM_P 2KZH_A 1LBM_A 1DL3_A 1NSJ_A.
Probab=34.75 E-value=42 Score=25.02 Aligned_cols=22 Identities=36% Similarity=0.437 Sum_probs=14.5
Q ss_pred EeecCCCCCHHHHHHHHHHHHhhCCCCc
Q psy969 55 LKPAGGISTFEDSVRWIYLVLIMLGPDW 82 (106)
Q Consensus 55 iKaaGGIrt~~~a~~~i~l~~~~lGa~w 82 (106)
||.. ||++.+||....+ +|++|
T Consensus 1 vKIC-Gi~~~~da~~~~~-----~g~d~ 22 (197)
T PF00697_consen 1 VKIC-GITRPEDARLAAE-----LGADY 22 (197)
T ss_dssp EEEE----SHHHHHHHHH-----HTSSE
T ss_pred CeEC-CCCcHHHHHHHHH-----cCCCE
Confidence 5774 5999999999998 47653
No 326
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=34.45 E-value=2e+02 Score=22.76 Aligned_cols=37 Identities=24% Similarity=0.287 Sum_probs=29.9
Q ss_pred ceeEeecCCCCCHHHHHHHHHHHHhhCCCCccCCCceeEeccc
Q psy969 52 KIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGASS 94 (106)
Q Consensus 52 ~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~w~~~~~~RiGtSs 94 (106)
.+-|=+=|||+ .+.+.+..+ +|+|++=.+..-++...
T Consensus 169 ~~~IeVDGGI~-~~t~~~~~~-----AGad~~VaGSalF~~~d 205 (220)
T COG0036 169 DILIEVDGGIN-LETIKQLAA-----AGADVFVAGSALFGADD 205 (220)
T ss_pred CeEEEEeCCcC-HHHHHHHHH-----cCCCEEEEEEEEeCCcc
Confidence 78899999995 577888887 79998877777787765
No 327
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=34.42 E-value=92 Score=23.84 Aligned_cols=35 Identities=17% Similarity=0.123 Sum_probs=23.9
Q ss_pred ceeEeecCCCCCHHHHHHHHHHHHhhCCCCccCCCceeEec
Q psy969 52 KIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGA 92 (106)
Q Consensus 52 ~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~w~~~~~~RiGt 92 (106)
.+.|=+.|||+. +....+.+ +|++++--+..-++.
T Consensus 173 ~~~I~VdGGI~~-~ti~~~~~-----aGad~iVvGsaI~~a 207 (228)
T PTZ00170 173 HLNIQVDGGINL-ETIDIAAD-----AGANVIVAGSSIFKA 207 (228)
T ss_pred cCeEEECCCCCH-HHHHHHHH-----cCCCEEEEchHHhCC
Confidence 477899999986 56777777 699865444333333
No 328
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=34.38 E-value=83 Score=24.66 Aligned_cols=38 Identities=16% Similarity=0.081 Sum_probs=30.9
Q ss_pred ceeEeecCCCCCHHHHHHHHHHHHhhCCCCccCCCceeEecc
Q psy969 52 KIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGAS 93 (106)
Q Consensus 52 ~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~w~~~~~~RiGtS 93 (106)
.+-|-+-+-+.+.++..++++. -+.++++|+..++|.=
T Consensus 228 ~ipIa~~E~~~~~~~~~~~~~~----~~~d~v~~~~~~~GGi 265 (316)
T cd03319 228 PLPIMADESCFSAADAARLAGG----GAYDGINIKLMKTGGL 265 (316)
T ss_pred CCCEEEeCCCCCHHHHHHHHhc----CCCCEEEEeccccCCH
Confidence 4667777789999999999985 5788889999999653
No 329
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=34.17 E-value=39 Score=27.36 Aligned_cols=25 Identities=32% Similarity=0.558 Sum_probs=21.5
Q ss_pred CCCCCHHHHHHHHHHHHhhCCCCcc
Q psy969 59 GGISTFEDSVRWIYLVLIMLGPDWL 83 (106)
Q Consensus 59 GGIrt~~~a~~~i~l~~~~lGa~w~ 83 (106)
-|-+|.++|+..-+++++.+|-+|+
T Consensus 70 aGc~tA~EAv~~A~laRe~~~t~wI 94 (247)
T PF05690_consen 70 AGCRTAEEAVRTARLAREAFGTNWI 94 (247)
T ss_dssp TT-SSHHHHHHHHHHHHHTTS-SEE
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCeE
Confidence 3689999999999999999999996
No 330
>TIGR01060 eno phosphopyruvate hydratase. Alternate name: enolase
Probab=34.01 E-value=1.5e+02 Score=24.95 Aligned_cols=52 Identities=17% Similarity=0.116 Sum_probs=34.4
Q ss_pred chHHHHHHHHHHHHhhhcCC--ceeEeecC--------C---------CCCHHHHHHHHHHHHhhCCCCcc
Q psy969 32 NTCGIIMCSAIKHFHKLSGK--KIGLKPAG--------G---------ISTFEDSVRWIYLVLIMLGPDWL 83 (106)
Q Consensus 32 ~~~v~lm~~~i~~~~~~~~~--~vgiKaaG--------G---------Irt~~~a~~~i~l~~~~lGa~w~ 83 (106)
.++++++.+++++.....++ .++|-++. + -.|.+++++++....+-.+..|+
T Consensus 213 ~~~l~~~~~ai~~~~~~~G~di~l~lD~aas~~~~~~~~~y~~~~~~~~~s~~eai~~~~~lle~~~i~~i 283 (425)
T TIGR01060 213 EEALEIISEAIEKAGYKPGEDVALALDCAASEFYDEEDGKYVYKGENKQLTSEEMIEYYKELVEKYPIVSI 283 (425)
T ss_pred HHHHHHHHHHHHHHhhccCCceEEEEEccccccccccCceeeecCcccccCHHHHHHHHHHHHhcCCcEEE
Confidence 56789999998876555555 46666652 1 13778999988732233567776
No 331
>COG4981 Enoyl reductase domain of yeast-type FAS1 [Lipid metabolism]
Probab=33.75 E-value=74 Score=29.15 Aligned_cols=22 Identities=27% Similarity=0.354 Sum_probs=19.3
Q ss_pred ceeEeecCCCCCHHHHHHHHHH
Q psy969 52 KIGLKPAGGISTFEDSVRWIYL 73 (106)
Q Consensus 52 ~vgiKaaGGIrt~~~a~~~i~l 73 (106)
-=||=.+.||-++|+|.+||+-
T Consensus 124 I~gvvIsAGIP~le~A~ElI~~ 145 (717)
T COG4981 124 IDGVVISAGIPSLEEAVELIEE 145 (717)
T ss_pred cceEEEecCCCcHHHHHHHHHH
Confidence 3478889999999999999985
No 332
>PRK00077 eno enolase; Provisional
Probab=33.43 E-value=1.3e+02 Score=25.38 Aligned_cols=52 Identities=15% Similarity=0.077 Sum_probs=32.7
Q ss_pred chHHHHHHHHHHHHhhhcCC--ceeEeec-------------CCCCCHHHHHHHHHHHHhhCCCCcc
Q psy969 32 NTCGIIMCSAIKHFHKLSGK--KIGLKPA-------------GGISTFEDSVRWIYLVLIMLGPDWL 83 (106)
Q Consensus 32 ~~~v~lm~~~i~~~~~~~~~--~vgiKaa-------------GGIrt~~~a~~~i~l~~~~lGa~w~ 83 (106)
.+.++++++++++..-..++ .++|-++ +...|.+++.+++....+-++..|+
T Consensus 216 ~e~l~~lreAi~~ag~~~G~di~l~lD~aas~~~~~~~y~~~~~~~s~~e~~~~~~~l~e~y~i~~i 282 (425)
T PRK00077 216 EEALDLILEAIEKAGYKPGEDIALALDCAASEFYKDGKYVLEGEGLTSEEMIDYLAELVDKYPIVSI 282 (425)
T ss_pred HHHHHHHHHHHHHhcCCCCCceEEEEehhhhhcccCCeeeccCCcCCHHHHHHHHHHHHhhCCcEEE
Confidence 55688889888654222233 4666664 3346778887776655555777776
No 333
>cd03329 MR_like_4 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 4. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=32.82 E-value=1.2e+02 Score=24.50 Aligned_cols=35 Identities=20% Similarity=0.129 Sum_probs=24.2
Q ss_pred hhcCCc--eeEeecCCCCCHHHHHHHHHHHHhhCCCCcc
Q psy969 47 KLSGKK--IGLKPAGGISTFEDSVRWIYLVLIMLGPDWL 83 (106)
Q Consensus 47 ~~~~~~--vgiKaaGGIrt~~~a~~~i~l~~~~lGa~w~ 83 (106)
+..++. +.|=+.++- |.++|++++...++ ++..|+
T Consensus 184 ~~~G~~~~l~vDan~~~-~~~~A~~~~~~l~~-~~l~~i 220 (368)
T cd03329 184 EAVGPDMRLMHDGAHWY-SRADALRLGRALEE-LGFFWY 220 (368)
T ss_pred HHhCCCCeEEEECCCCc-CHHHHHHHHHHhhh-cCCCeE
Confidence 345665 455555554 79999999887655 578887
No 334
>PF01474 DAHP_synth_2: Class-II DAHP synthetase family; InterPro: IPR002480 Members of the 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthetase family (2.5.1.54 from EC) catalyse the first step in aromatic amino acid biosynthesis from chorismate. Class I (see IPR006218 from INTERPRO) includes bacterial and yeast enzymes; class II includes higher plants and various microorganisms []. The first step in the common pathway leading to the biosynthesis of aromatic compounds is the stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP). This reaction is catalyzed by DAHP synthase, a metal-activated enzyme, which in microorganisms is the target for negative-feedback regulation by pathway intermediates or by end products.; GO: 0003849 3-deoxy-7-phosphoheptulonate synthase activity, 0009073 aromatic amino acid family biosynthetic process; PDB: 3NUD_A 3KGF_A 2W19_A 3NUE_B 3PFP_A 2B7O_B 3RZI_A 3NV8_B 2W1A_A.
Probab=32.63 E-value=1.3e+02 Score=26.33 Aligned_cols=54 Identities=24% Similarity=0.256 Sum_probs=29.5
Q ss_pred chHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCCccCCCc----eeEeccchHHHH
Q psy969 32 NTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDL----FRIGASSLLNNI 99 (106)
Q Consensus 32 ~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~w~~~~~----~RiGtSs~~~~l 99 (106)
-.+|+.++.. .+.||||. |==-+.++.+++++. |.++ =.|+. .|+|+......|
T Consensus 272 gAHve~~~gi--------~NPigvKv-GP~~~~~~l~~l~~~----LnP~-~~pGRltlI~RmGa~~v~~~L 329 (439)
T PF01474_consen 272 GAHVEFLRGI--------ANPIGVKV-GPSMTPEELVELCDR----LNPD-NEPGRLTLITRMGADKVRERL 329 (439)
T ss_dssp SHHHHHHHHB---------S-EEEEE--TT--HHHHHHHHHH----HSTT---TTSEEEEE---TTTHHHHH
T ss_pred hhHHHHHhhc--------cCccceee-CCCCCHHHHHHHHHH----hCCC-CCCCeEEEEecCCcHHHHHHh
Confidence 4478887643 58999999 767789999999986 3333 12332 467877644433
No 335
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=32.51 E-value=1.4e+02 Score=26.89 Aligned_cols=22 Identities=23% Similarity=0.151 Sum_probs=18.6
Q ss_pred ceeEeecCCCCCHHHHHHHHHH
Q psy969 52 KIGLKPAGGISTFEDSVRWIYL 73 (106)
Q Consensus 52 ~vgiKaaGGIrt~~~a~~~i~l 73 (106)
++-|=+.|+|+|.+++.++++.
T Consensus 687 ~~pv~~~G~i~~~~~a~~~l~~ 708 (765)
T PRK08255 687 GIATIAVGAISEADHVNSIIAA 708 (765)
T ss_pred CCEEEEeCCCCCHHHHHHHHHc
Confidence 3557778999999999999983
No 336
>PF01645 Glu_synthase: Conserved region in glutamate synthase; InterPro: IPR002932 Ferredoxin-dependent glutamate synthases have been implicated in a number of functions including photorespiration in Arabidopsis where they may also play a role in primary nitrogen assimilation in roots []. This region is expressed as a seperate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.; GO: 0015930 glutamate synthase activity, 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0006537 glutamate biosynthetic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.
Probab=31.81 E-value=94 Score=26.22 Aligned_cols=45 Identities=24% Similarity=0.355 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHhhhc-CCceeEeecCCCCCHHHHHHHHHHHHhhCCCCcc
Q psy969 34 CGIIMCSAIKHFHKLS-GKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWL 83 (106)
Q Consensus 34 ~v~lm~~~i~~~~~~~-~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~w~ 83 (106)
.++-|.+-|.++++.. +.+|+||.+.| +..++...... -.|+|++
T Consensus 186 s~edl~~~I~~Lr~~~~~~pVgvKl~~~-~~~~~~~~~~~----~ag~D~I 231 (368)
T PF01645_consen 186 SIEDLAQLIEELRELNPGKPVGVKLVAG-RGVEDIAAGAA----KAGADFI 231 (368)
T ss_dssp SHHHHHHHHHHHHHH-TTSEEEEEEE-S-TTHHHHHHHHH----HTT-SEE
T ss_pred CHHHHHHHHHHHHhhCCCCcEEEEECCC-CcHHHHHHhhh----hccCCEE
Confidence 3555666666666667 67899999765 45555544322 2688754
No 337
>cd03321 mandelate_racemase Mandelate racemase (MR) catalyzes the Mg2+-dependent 1,1-proton transfer reaction that interconverts the enantiomers of mandelic acid. MR is the first enzyme in the bacterial pathway that converts mandelic acid to benzoic acid and allows this pathway to utilize either enantiomer of mandelate. MR belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=31.69 E-value=83 Score=25.33 Aligned_cols=29 Identities=14% Similarity=0.206 Sum_probs=22.1
Q ss_pred CceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969 51 KKIGLKPAGGISTFEDSVRWIYLVLIMLGPD 81 (106)
Q Consensus 51 ~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~ 81 (106)
..++||. |-++.++..+.++.+++.+|.+
T Consensus 158 ~~~KiKv--g~~~~~~d~~~v~air~~~g~~ 186 (355)
T cd03321 158 HAVKTKI--GYPTADEDLAVVRSIRQAVGDG 186 (355)
T ss_pred HHHhhhc--CCCChHhHHHHHHHHHHhhCCC
Confidence 3477776 4567788888899888888865
No 338
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=31.50 E-value=37 Score=27.17 Aligned_cols=60 Identities=23% Similarity=0.183 Sum_probs=0.0
Q ss_pred hhHHHhhCCCcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHH
Q psy969 4 PRKVAFKGSNFRTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIY 72 (106)
Q Consensus 4 ~~iai~aGadFKTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~ 72 (106)
++...++|+++-|-+|..+.--..+.+=.+.++.+++.++ +-|=+-|+|.|++|+.++++
T Consensus 144 ~~~l~~~G~~~i~vH~Rt~~q~~~~~a~w~~i~~i~~~~~---------ipvi~NGdI~s~~d~~~~~~ 203 (309)
T PF01207_consen 144 ARILEDAGVSAITVHGRTRKQRYKGPADWEAIAEIKEALP---------IPVIANGDIFSPEDAERMLE 203 (309)
T ss_dssp HHHHHHTT--EEEEECS-TTCCCTS---HHHHHHCHHC-T---------SEEEEESS--SHHHHHHHCC
T ss_pred HHHhhhcccceEEEecCchhhcCCcccchHHHHHHhhccc---------ceeEEcCccCCHHHHHHHHH
No 339
>PLN02321 2-isopropylmalate synthase
Probab=31.41 E-value=1.6e+02 Score=26.61 Aligned_cols=78 Identities=19% Similarity=0.126 Sum_probs=49.9
Q ss_pred hhHHHhhCCCc--ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969 4 PRKVAFKGSNF--RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD 81 (106)
Q Consensus 4 ~~iai~aGadF--KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~ 81 (106)
+..|+++||+. -|-.|.+ .. .||.++|++-.+++.... ....|+.. || +++...+.-++++++.|-.
T Consensus 305 slaAv~AGA~~Vd~TinGlG--ER-aGNa~LEevv~~L~~~~~-----~~~~g~~t--gi-dl~~L~~~s~~V~~~~g~~ 373 (632)
T PLN02321 305 TLAGAHAGARQVEVTINGIG--ER-AGNASLEEVVMAIKCRGD-----EQLGGLYT--GI-NPVHITPTSKMVSEYTGMQ 373 (632)
T ss_pred HHHHHHhCCCEEEEeccccc--cc-ccCccHHHHHHHHHhccC-----ccccCccc--cc-CHHHHHHHHHHHHHHhCcC
Confidence 45789999999 5556655 22 367779988888754110 00123332 34 3566666677778888976
Q ss_pred ccCCCceeEecc
Q psy969 82 WLNKDLFRIGAS 93 (106)
Q Consensus 82 w~~~~~~RiGtS 93 (106)
++|+.-.+|..
T Consensus 374 -v~~~kPiVG~n 384 (632)
T PLN02321 374 -VQPHKAIVGAN 384 (632)
T ss_pred -CCCCccccccc
Confidence 78888777764
No 340
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=31.39 E-value=1.9e+02 Score=23.29 Aligned_cols=78 Identities=17% Similarity=0.080 Sum_probs=42.3
Q ss_pred hhHHHhhCCCc-ccCCCCCCC----CCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCH-HHHHHHHHHHHhh
Q psy969 4 PRKVAFKGSNF-RTLHGRGPD----STSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTF-EDSVRWIYLVLIM 77 (106)
Q Consensus 4 ~~iai~aGadF-KTSTG~~~~----gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~-~~a~~~i~l~~~~ 77 (106)
++++.+.|+|+ --.-| -|. ...+|+.=..+-+++.+.++.+.+.++-++.+|...|...- ++..++++.+ +-
T Consensus 83 a~~~~~~g~d~IdlN~g-CP~~~v~~~g~Gs~ll~~p~~~~eiv~av~~a~d~pv~vKiR~G~~~~~~~~~~~a~~l-e~ 160 (321)
T PRK10415 83 ARINVESGAQIIDINMG-CPAKKVNRKLAGSALLQYPDLVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCVEIAQLA-ED 160 (321)
T ss_pred HHHHHHCCCCEEEEeCC-CCHHHHcCCCcccHHhcCHHHHHHHHHHHHHhcCCceEEEEEccccCCcchHHHHHHHH-HH
Confidence 44556677777 55544 121 00111111334455555555555556668999999887642 2455554432 23
Q ss_pred CCCCcc
Q psy969 78 LGPDWL 83 (106)
Q Consensus 78 lGa~w~ 83 (106)
.|++++
T Consensus 161 ~G~d~i 166 (321)
T PRK10415 161 CGIQAL 166 (321)
T ss_pred hCCCEE
Confidence 688886
No 341
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=31.34 E-value=1.5e+02 Score=24.57 Aligned_cols=57 Identities=5% Similarity=-0.018 Sum_probs=32.9
Q ss_pred hHHHhhCCCc-ccCCC-CCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCC------------------CCH
Q psy969 5 RKVAFKGSNF-RTLHG-RGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGI------------------STF 64 (106)
Q Consensus 5 ~iai~aGadF-KTSTG-~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGI------------------rt~ 64 (106)
+...++|+|| -.|+| +...... +.. ...+..+++. . ++-|=+.|+| +|.
T Consensus 242 ~~l~~~gvd~i~vs~g~~~~~~~~-~~~-~~~~~~~k~~-------~--~~pv~~~G~i~~~~~~~~~~~~~~~~~~~~~ 310 (361)
T cd04747 242 APLVDAGVDIFHCSTRRFWEPEFE-GSE-LNLAGWTKKL-------T--GLPTITVGSVGLDGDFIGAFAGDEGASPASL 310 (361)
T ss_pred HHHHHcCCCEEEecCCCccCCCcC-ccc-hhHHHHHHHH-------c--CCCEEEECCcccccccccccccccccccCCH
Confidence 3456789999 88887 2211111 000 1122222222 2 3456689999 699
Q ss_pred HHHHHHHH
Q psy969 65 EDSVRWIY 72 (106)
Q Consensus 65 ~~a~~~i~ 72 (106)
+++.++++
T Consensus 311 ~~a~~~l~ 318 (361)
T cd04747 311 DRLLERLE 318 (361)
T ss_pred HHHHHHHH
Confidence 99999998
No 342
>PRK14109 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase; Provisional
Probab=31.09 E-value=72 Score=29.98 Aligned_cols=42 Identities=21% Similarity=0.298 Sum_probs=30.0
Q ss_pred chHHHHHHHHHHHHhhh--cCCceeEeecCCCCCHHHHHHHHHHH
Q psy969 32 NTCGIIMCSAIKHFHKL--SGKKIGLKPAGGISTFEDSVRWIYLV 74 (106)
Q Consensus 32 ~~~v~lm~~~i~~~~~~--~~~~vgiKaaGGIrt~~~a~~~i~l~ 74 (106)
.+++..|++-+.++... ..+.|+.+. ||||+.|...+++.++
T Consensus 349 ~~~i~~mr~ri~~~~~~~~~~~niKlg~-GGlrDIEf~~Q~lqL~ 392 (1007)
T PRK14109 349 VEDVQAMRRRVEDLIPAAERDRELKLGP-GGLRDVEFAVQLLQLV 392 (1007)
T ss_pred HHHHHHHHHHHHHhcCCCCCCCCcccCC-ccHhHHHHHHHHHHHH
Confidence 34677888887765221 234677777 9999999888888764
No 343
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=30.92 E-value=1.1e+02 Score=22.29 Aligned_cols=24 Identities=25% Similarity=0.353 Sum_probs=18.9
Q ss_pred eeEeecCCCCCHHHHHHHHHHHHhhCCCCc
Q psy969 53 IGLKPAGGISTFEDSVRWIYLVLIMLGPDW 82 (106)
Q Consensus 53 vgiKaaGGIrt~~~a~~~i~l~~~~lGa~w 82 (106)
.-|=+.|||+. +++.++++ .|++.
T Consensus 171 ~~i~v~GGI~~-~nv~~l~~-----~GaD~ 194 (220)
T PRK05581 171 ILIEVDGGINA-DNIKECAE-----AGADV 194 (220)
T ss_pred ceEEEECCCCH-HHHHHHHH-----cCCCE
Confidence 34557899999 89999998 68874
No 344
>cd03318 MLE Muconate Lactonizing Enzyme (MLE), an homooctameric enzyme, catalyses the conversion of cis,cis-muconate (CCM) to muconolactone (ML) in the catechol branch of the beta-ketoadipate pathway. This pathway is used in soil microbes to breakdown lignin-derived aromatics, catechol and protocatechuate, to citric acid cycle intermediates. Some bacterial species are also capable of dehalogenating chloroaromatic compounds by the action of chloromuconate lactonizing enzymes (Cl-MLEs). MLEs are members of the enolase superfamily characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=30.82 E-value=1.3e+02 Score=24.10 Aligned_cols=29 Identities=21% Similarity=0.295 Sum_probs=22.5
Q ss_pred CceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969 51 KKIGLKPAGGISTFEDSVRWIYLVLIMLGPD 81 (106)
Q Consensus 51 ~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~ 81 (106)
..++||. |-.+.++-++.++.+++.+|.+
T Consensus 160 ~~~KiKv--g~~~~~~d~~~v~avr~~~g~~ 188 (365)
T cd03318 160 RRFKLKM--GARPPADDLAHVEAIAKALGDR 188 (365)
T ss_pred eEEEEEe--CCCChHHHHHHHHHHHHHcCCC
Confidence 5678887 4567777788888888999864
No 345
>PRK08645 bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Reviewed
Probab=30.57 E-value=2.5e+02 Score=24.77 Aligned_cols=88 Identities=19% Similarity=0.123 Sum_probs=46.0
Q ss_pred HHhhCCCc-ccCCCCCC-------CCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCC-----------CCHHHH
Q psy969 7 VAFKGSNF-RTLHGRGP-------DSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGI-----------STFEDS 67 (106)
Q Consensus 7 ai~aGadF-KTSTG~~~-------~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGI-----------rt~~~a 67 (106)
-+++|||. .|.| |.. .|.+ .+..+++..+++-.++.... .+.++|.| -|.+++
T Consensus 52 yl~AGAdvi~TnT-y~as~~~l~~~g~~-----~~~~~l~~~av~lAr~a~~~--~~~VagsiGP~g~~~~~~~~~~~~~ 123 (612)
T PRK08645 52 YIEAGADVIQTNT-FGANRIKLKRYGLE-----DKVKEINRAAVRLAREAAGD--DVYVAGTIGPIGGRGPLGDISLEEI 123 (612)
T ss_pred HHHhCCCEEecCc-ccccHHHHHhcCch-----HHHHHHHHHHHHHHHHHhcC--CCeEEEeCCCCCCCCCCCCCCHHHH
Confidence 36899999 9999 431 1223 33445555555433333322 24455555 367888
Q ss_pred HHHHHHHHhhCCCCccCCCceeEeccchHHHHHHHHh
Q psy969 68 VRWIYLVLIMLGPDWLNKDLFRIGASSLLNNILQELE 104 (106)
Q Consensus 68 ~~~i~l~~~~lGa~w~~~~~~RiGtSs~~~~l~~~l~ 104 (106)
.++...--+.|-. -.++.+-+-|-+.+..++..++
T Consensus 124 ~~~~~~~~~~l~~--~gvD~l~~ET~~~~~Ea~a~~~ 158 (612)
T PRK08645 124 RREFREQIDALLE--EGVDGLLLETFYDLEELLLALE 158 (612)
T ss_pred HHHHHHHHHHHHh--cCCCEEEEEccCCHHHHHHHHH
Confidence 7775543333311 1245566666655555554443
No 346
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=30.41 E-value=54 Score=26.47 Aligned_cols=44 Identities=34% Similarity=0.514 Sum_probs=31.4
Q ss_pred CCCCCHHHHHHHHHHHHhhCCCCccCCCceeEecc-chHHHHHHHHh
Q psy969 59 GGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGAS-SLLNNILQELE 104 (106)
Q Consensus 59 GGIrt~~~a~~~i~l~~~~lGa~w~~~~~~RiGtS-s~~~~l~~~l~ 104 (106)
-|=+|.++|+..-.++++++|-+|+.= .-||-. .+++++.+.++
T Consensus 70 aG~~ta~eAv~~a~lare~~~~~~iKl--EVi~d~~~Llpd~~~tv~ 114 (248)
T cd04728 70 AGCRTAEEAVRTARLAREALGTDWIKL--EVIGDDKTLLPDPIETLK 114 (248)
T ss_pred CCCCCHHHHHHHHHHHHHHhCCCeEEE--EEecCccccccCHHHHHH
Confidence 368999999999999999999999632 244532 45555555443
No 347
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=30.10 E-value=2.5e+02 Score=21.31 Aligned_cols=67 Identities=18% Similarity=0.150 Sum_probs=44.1
Q ss_pred hhhHHHhhCCCc-ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhh---cCCceeEeecCCC-----CCHHHHHHHHHH
Q psy969 3 RPRKVAFKGSNF-RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKL---SGKKIGLKPAGGI-----STFEDSVRWIYL 73 (106)
Q Consensus 3 ~~~iai~aGadF-KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~---~~~~vgiKaaGGI-----rt~~~a~~~i~l 73 (106)
++++|-..|+++ ..-.|+.+.... .+..+.+.+.+++..+. .+-++.|-.-++. .|++++.++++.
T Consensus 90 ~i~~A~~lG~~~v~~~~g~~~~~~~-----~~~~~~~~~~l~~l~~~a~~~gi~l~lEn~~~~~~~~~~t~~~~~~li~~ 164 (279)
T cd00019 90 EIERCEELGIRLLVFHPGSYLGQSK-----EEGLKRVIEALNELIDKAETKGVVIALETMAGQGNEIGSSFEELKEIIDL 164 (279)
T ss_pred HHHHHHHcCCCEEEECCCCCCCCCH-----HHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHh
Confidence 467888889999 877776443233 33445555555555433 3556777765555 688999999987
Q ss_pred H
Q psy969 74 V 74 (106)
Q Consensus 74 ~ 74 (106)
+
T Consensus 165 v 165 (279)
T cd00019 165 I 165 (279)
T ss_pred c
Confidence 4
No 348
>COG0149 TpiA Triosephosphate isomerase [Carbohydrate transport and metabolism]
Probab=29.98 E-value=1.9e+02 Score=23.25 Aligned_cols=69 Identities=19% Similarity=0.105 Sum_probs=47.1
Q ss_pred CCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhc-C--CceeEeecCCCCCHHHHHHHHHHHHhhCCCCccCCCceeEecc
Q psy969 17 LHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLS-G--KKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGAS 93 (106)
Q Consensus 17 STG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~-~--~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~w~~~~~~RiGtS 93 (106)
.||+ .+| +++++.+...|+.+-... + .++-|=-=|+|+.-+.+..+.+ .+. +-+-+|..
T Consensus 172 GTG~---~at-----~~~a~~v~~~Ir~~~~~~~~~~~~v~IlYGGSV~~~N~~e~~~~-----~~i-----dG~LVGgA 233 (251)
T COG0149 172 GTGK---SAS-----PADAEEVHAFIRAVLAELFGAEEKVRILYGGSVKPGNAAELAAQ-----PDI-----DGALVGGA 233 (251)
T ss_pred cCCC---CCC-----HHHHHHHHHHHHHHHHHhcCCCCCeEEEEeCCcChhHHHHHhcC-----CCC-----CeEEEcce
Confidence 4664 478 899999999998774332 2 4677777788988888877776 444 45678877
Q ss_pred chHH-HHHHHH
Q psy969 94 SLLN-NILQEL 103 (106)
Q Consensus 94 s~~~-~l~~~l 103 (106)
|+.. .....|
T Consensus 234 slka~~f~~ii 244 (251)
T COG0149 234 SLKADDFLAIL 244 (251)
T ss_pred eecchhHHHHH
Confidence 7653 444433
No 349
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=29.96 E-value=77 Score=24.64 Aligned_cols=22 Identities=23% Similarity=0.289 Sum_probs=18.7
Q ss_pred CceeEeecCCCCCHHHHHHHHH
Q psy969 51 KKIGLKPAGGISTFEDSVRWIY 72 (106)
Q Consensus 51 ~~vgiKaaGGIrt~~~a~~~i~ 72 (106)
.++-|=+||||++.+|..++-+
T Consensus 192 ~~~pviasGGv~s~eDl~~l~~ 213 (243)
T TIGR01919 192 TDAIVAASGGSSLLDDLRAIKY 213 (243)
T ss_pred CCCCEEEECCcCCHHHHHHHHh
Confidence 3577889999999999998754
No 350
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=29.73 E-value=2.6e+02 Score=21.46 Aligned_cols=37 Identities=27% Similarity=0.236 Sum_probs=25.4
Q ss_pred ceeEeecCCCCCHHHHHHHHHHHHhhCCCCccCCCceeEeccchHHHHH
Q psy969 52 KIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGASSLLNNIL 100 (106)
Q Consensus 52 ~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~w~~~~~~RiGtSs~~~~l~ 100 (106)
++-|=+-|||++.+++.++++ . + +.+-+| |..++.+.
T Consensus 187 ~~pI~vggGI~~~e~~~~~~~-----~-A-----DgvVvG-Saiv~~~~ 223 (242)
T cd04724 187 DLPIAVGFGISTPEQAAEVAK-----Y-A-----DGVIVG-SALVKIIE 223 (242)
T ss_pred CCcEEEEccCCCHHHHHHHHc-----c-C-----CEEEEC-HHHHHHHH
Confidence 444555789999999999998 3 3 345677 55555443
No 351
>PRK14057 epimerase; Provisional
Probab=29.02 E-value=1.8e+02 Score=23.37 Aligned_cols=51 Identities=8% Similarity=-0.050 Sum_probs=33.2
Q ss_pred chHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCCccCCCceeEec
Q psy969 32 NTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGA 92 (106)
Q Consensus 32 ~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~w~~~~~~RiGt 92 (106)
.+-|+.+++.++ ..+-.+-|=+=|||+. +.+.++.+ +|++|+-.+..-|+.
T Consensus 177 l~KI~~lr~~~~----~~~~~~~IeVDGGI~~-~ti~~l~~-----aGad~~V~GSalF~~ 227 (254)
T PRK14057 177 HERVAQLLCLLG----DKREGKIIVIDGSLTQ-DQLPSLIA-----QGIDRVVSGSALFRD 227 (254)
T ss_pred HHHHHHHHHHHH----hcCCCceEEEECCCCH-HHHHHHHH-----CCCCEEEEChHhhCC
Confidence 444555554443 2344688999999975 47778888 799876555555553
No 352
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=28.99 E-value=2.9e+02 Score=21.77 Aligned_cols=45 Identities=9% Similarity=-0.026 Sum_probs=24.4
Q ss_pred HHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCCccC
Q psy969 36 IIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLN 84 (106)
Q Consensus 36 ~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~w~~ 84 (106)
+.+.+.++...+..+..+.+|.+-.+.+.. ++.+.++ -.|++++.
T Consensus 154 ~~~~~iv~~v~~~~~~Pv~vKl~~~~~~~~---~~a~~~~-~~Gadgi~ 198 (299)
T cd02940 154 ELVEEICRWVREAVKIPVIAKLTPNITDIR---EIARAAK-EGGADGVS 198 (299)
T ss_pred HHHHHHHHHHHHhcCCCeEEECCCCchhHH---HHHHHHH-HcCCCEEE
Confidence 333333433344456789999986554433 3333221 26888764
No 353
>PRK14567 triosephosphate isomerase; Provisional
Probab=28.85 E-value=2.1e+02 Score=22.82 Aligned_cols=62 Identities=21% Similarity=0.081 Sum_probs=44.2
Q ss_pred CCCCCCCCCCCCCCCchHHHHHHHHHHHHhhh----cCCceeEeecCCCCCHHHHHHHHHHHHhhCCCCccCCCceeEec
Q psy969 17 LHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKL----SGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGA 92 (106)
Q Consensus 17 STG~~~~gat~~~~~~~~v~lm~~~i~~~~~~----~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~w~~~~~~RiGt 92 (106)
.||. .+| +++++.|...|+++-.. ....+.|=--|+| +.+.+.+++.+ + +-+-+-+|.
T Consensus 171 GTG~---~as-----~e~i~~~~~~IR~~l~~~~~~~a~~v~IlYGGSV-~~~N~~~l~~~-----~----diDG~LVGg 232 (253)
T PRK14567 171 GTGV---VAS-----LEQIQETHQFIRSLLAKVDERLAKNIKIVYGGSL-KAENAKDILSL-----P----DVDGGLIGG 232 (253)
T ss_pred CCCC---CCC-----HHHHHHHHHHHHHHHHhhcccccccceEEEcCcC-CHHHHHHHHcC-----C----CCCEEEeeh
Confidence 4554 378 99999999999876322 2345777777888 99999999983 3 134567888
Q ss_pred cchH
Q psy969 93 SSLL 96 (106)
Q Consensus 93 Ss~~ 96 (106)
.|+-
T Consensus 233 asL~ 236 (253)
T PRK14567 233 ASLK 236 (253)
T ss_pred hhhc
Confidence 7764
No 354
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=28.83 E-value=1.3e+02 Score=23.56 Aligned_cols=49 Identities=16% Similarity=0.117 Sum_probs=29.7
Q ss_pred HhhCCCc-ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecC---CCCCHHHHHHHHH
Q psy969 8 AFKGSNF-RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAG---GISTFEDSVRWIY 72 (106)
Q Consensus 8 i~aGadF-KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaG---GIrt~~~a~~~i~ 72 (106)
+++|||| -|=--|- ++.+.-+.+.+++. + +.+..-- ++.++.++..|..
T Consensus 154 ~~aGA~f~iTQ~~fd----------~~~~~~~~~~~~~~----g--i~~PIi~Gi~p~~s~k~~~~~~~ 206 (272)
T TIGR00676 154 VDAGADYAITQLFFD----------NDDYYRFVDRCRAA----G--IDVPIIPGIMPITNFKQLLRFAE 206 (272)
T ss_pred HHcCCCeEeeccccC----------HHHHHHHHHHHHHc----C--CCCCEecccCCcCCHHHHHHHHh
Confidence 4689999 9887775 45555555555432 1 2222222 4677887777776
No 355
>PRK09389 (R)-citramalate synthase; Provisional
Probab=28.79 E-value=1.9e+02 Score=24.98 Aligned_cols=73 Identities=18% Similarity=0.223 Sum_probs=47.2
Q ss_pred hhHHHhhCCCc--ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969 4 PRKVAFKGSNF--RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD 81 (106)
Q Consensus 4 ~~iai~aGadF--KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~ 81 (106)
+..|+++||+. -|-.|.+- -.||+++|.+-.+++.. .|+.. || +++...++-+++++..|-.
T Consensus 204 alaAv~aGa~~Vd~Ti~GiGE---RaGNa~lE~lv~~L~~~----------~g~~~--~i-dl~~l~~~s~~v~~~~~~~ 267 (488)
T PRK09389 204 TLAALAAGADQVHVTINGIGE---RAGNASLEEVVMALKHL----------YDVET--GI-KLEELYELSRLVSRLTGIP 267 (488)
T ss_pred HHHHHHcCCCEEEEEcccccc---cccCccHHHHHHHHHhh----------cCCCC--Cc-CHHHHHHHHHHHHHHhCCC
Confidence 45789999999 56666652 23566688776665321 12222 33 5777777777788888875
Q ss_pred ccCCCceeEecc
Q psy969 82 WLNKDLFRIGAS 93 (106)
Q Consensus 82 w~~~~~~RiGtS 93 (106)
+.|+.-.+|.+
T Consensus 268 -v~~~~pivG~~ 278 (488)
T PRK09389 268 -VPPNKAIVGEN 278 (488)
T ss_pred -CCCCCCcccHh
Confidence 67777666654
No 356
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=28.67 E-value=2.1e+02 Score=23.66 Aligned_cols=69 Identities=16% Similarity=-0.028 Sum_probs=39.9
Q ss_pred hhHHHhhCCCcccCCCCCCCCCCCCCCCchHHHHHHHHHHHH-hhhcCCceeEeecCCCCCHHHHHHHHH
Q psy969 4 PRKVAFKGSNFRTLHGRGPDSTSYGNVCNTCGIIMCSAIKHF-HKLSGKKIGLKPAGGISTFEDSVRWIY 72 (106)
Q Consensus 4 ~~iai~aGadFKTSTG~~~~gat~~~~~~~~v~lm~~~i~~~-~~~~~~~vgiKaaGGIrt~~~a~~~i~ 72 (106)
.+.+.++|+|.---.|+..+|-.-.-.=..-+..+.+.+.+. ......++-|=+||||.|-..+...+.
T Consensus 116 A~~a~~~GaD~vVaqG~EAGGH~G~~~t~~L~~~v~~~l~~~~~~~~~~~iPViAAGGI~dgr~~aaala 185 (320)
T cd04743 116 LKQFLENGARKFIFEGRECGGHVGPRSSFVLWESAIDALLAANGPDKAGKIHLLFAGGIHDERSAAMVSA 185 (320)
T ss_pred HHHHHHcCCCEEEEecCcCcCCCCCCCchhhHHHHHHHHHHhhcccccCCccEEEEcCCCCHHHHHHHHH
Confidence 457888999995566665433220000022233333333221 001122688999999999999999988
No 357
>PRK02901 O-succinylbenzoate synthase; Provisional
Probab=28.62 E-value=47 Score=27.11 Aligned_cols=35 Identities=23% Similarity=0.220 Sum_probs=19.8
Q ss_pred eeEeecCC--CCCHHHHHHHHHHHHhhCCCCccCCCceeEe
Q psy969 53 IGLKPAGG--ISTFEDSVRWIYLVLIMLGPDWLNKDLFRIG 91 (106)
Q Consensus 53 vgiKaaGG--Irt~~~a~~~i~l~~~~lGa~w~~~~~~RiG 91 (106)
+++-.+.| +++.++..++++. -++++++++..++|
T Consensus 183 ~~vPIA~DEs~~~~~d~~~l~~~----~a~dvi~ik~~~~G 219 (327)
T PRK02901 183 VGVPIAADESIRRAEDPLRVARA----GAADVAVLKVAPLG 219 (327)
T ss_pred CCCCEEeCCCCCCHHHHHHHHHc----CCCCEEEeCcchhC
Confidence 44555555 5566666666653 35555566666655
No 358
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=28.46 E-value=2.1e+02 Score=23.51 Aligned_cols=21 Identities=10% Similarity=0.044 Sum_probs=18.0
Q ss_pred eeEeecCCCCCHHHHHHHHHH
Q psy969 53 IGLKPAGGISTFEDSVRWIYL 73 (106)
Q Consensus 53 vgiKaaGGIrt~~~a~~~i~l 73 (106)
+-|=++|+|++.+++.++++.
T Consensus 290 ~pvi~~G~i~~~~~~~~~l~~ 310 (370)
T cd02929 290 KPVVGVGRFTSPDKMVEVVKS 310 (370)
T ss_pred CCEEEeCCCCCHHHHHHHHHc
Confidence 456678999999999999983
No 359
>TIGR00419 tim triosephosphate isomerase. Triosephosphate isomerase (tim/TPIA) is the glycolytic enzyme that catalyzes the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. The active site of the enzyme is located between residues 240-258 of the model ([AV]-Y-E-P-[LIVM]-W-[SA]-I-G-T-[GK]) with E being the active site residue. There is a slight deviation from this sequence within the archeal members of this family.
Probab=28.44 E-value=1.7e+02 Score=22.55 Aligned_cols=60 Identities=22% Similarity=0.156 Sum_probs=40.2
Q ss_pred CCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCCccCCCceeEeccch
Q psy969 17 LHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGASSL 95 (106)
Q Consensus 17 STG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~w~~~~~~RiGtSs~ 95 (106)
.||+. +| +++++.|.+.|+ +.+....++.|=--|+|+.-+...-+.. .+. +-+-+|..|+
T Consensus 143 GtG~~---as-----~~~~~~v~~~ir-~~~~~~~~~~IlYGGSV~~~N~~~l~~~-----~~i-----DG~LvG~Asl 202 (205)
T TIGR00419 143 GTGIP---VS-----PAQPEVVHGSVR-AVKEVNESVRVLCGAGISTGEDAELAAQ-----LGA-----EGVLLASGSL 202 (205)
T ss_pred CCCCC---CC-----HHHHHHHHHHHH-hhhhhcCCceEEEeCCCCHHHHHHHhcC-----CCC-----CEEEEeeeee
Confidence 45653 78 999999999997 4444455677777778877766665555 343 3556766654
No 360
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=28.23 E-value=3.2e+02 Score=22.00 Aligned_cols=42 Identities=12% Similarity=0.099 Sum_probs=25.4
Q ss_pred HHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCCcc
Q psy969 38 MCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWL 83 (106)
Q Consensus 38 m~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~w~ 83 (106)
+.+.+++..+..+..+-+|.+..+.+..+..+.++. .|++.+
T Consensus 151 ~~eiv~~v~~~~~iPv~vKl~p~~~~~~~~a~~l~~----~Gadgi 192 (325)
T cd04739 151 YLDILRAVKSAVTIPVAVKLSPFFSALAHMAKQLDA----AGADGL 192 (325)
T ss_pred HHHHHHHHHhccCCCEEEEcCCCccCHHHHHHHHHH----cCCCeE
Confidence 344444444556788999999876655444443332 588764
No 361
>PF01985 CRS1_YhbY: CRS1 / YhbY (CRM) domain; InterPro: IPR001890 The CRM domain is an ~100-amino acid RNA-binding domain. The name chloroplast RNA splicing and ribosome maturation (CRM) has been suggested to reflect the functions established for the four characterised members of the family: Zea mays (Maize) CRS1 (Q9FYT6 from SWISSPROT), CAF1 (Q84N49 from SWISSPROT) and CAF2 (Q84N48 from SWISSPROT) proteins and the Escherichia coli protein YhbY (P0AGK4 from SWISSPROT). The CRM domain is found in eubacteria, archaea, and plants. The CRM domain is represented as a stand-alone protein in archaea and bacteria, and in single- and multi-domain proteins in plants. It has been suggested that prokaryotic CRM proteins existed as ribosome-associated proteins prior to the divergence of archaea and bacteria, and that they were co-opted in the plant lineage as RNA binding modules by incorporation into diverse protein contexts. Plant CRM domains are predicted to reside not only in the chloroplast, but also in the mitochondrion and the nucleo/cytoplasmic compartment. The diversity of the CRM domain family in plants suggests a diverse set of RNA targets [, ]. The CRM domain is a compact alpha/beta domain consisting of a four-stranded beta sheet and three alpha helices with an alpha-beta-alpha-beta-alpha-beta-beta topology. The beta sheet face is basic, consistent with a role in RNA binding. Proximal to the basic beta sheet face is another moiety that could contribute to nucleic acid recognition. Connecting strand beta1 and helix alpha2 is a loop with a six amino acid motif, GxxG flanked by large aliphatic residues, within which one 'x' is typically a basic residue []. Escherichia coli YhbY is associated with pre-50S ribosomal subunits, which implies a function in ribosome assembly. GFP fused to a single-domain CRM protein from maize localises to the nucleolus, suggesting that an analogous activity may have been retained in plants []. A CRM domain containing protein in plant chloroplasts has been shown to function in group I and II intron splicing []. In vitro experiments with an isolated maize CRM domain have shown it to have RNA binding activity. These and other results suggest that the CRM domain evolved in the context of ribosome function prior to the divergence of Archaea and Bacteria, that this function has been maintained in extant prokaryotes, and that the domain was recruited to serve as an RNA binding module during the evolution of plant genomes []. YhbY has a fold similar to that of the C-terminal domain of translation initiation factor 3 (IF3C), which binds to 16S rRNA in the 30S ribosome [].; GO: 0003723 RNA binding; PDB: 1RQ8_A 1JO0_B 1LN4_A.
Probab=28.08 E-value=1.8e+02 Score=18.99 Aligned_cols=48 Identities=13% Similarity=0.084 Sum_probs=36.5
Q ss_pred CCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969 22 PDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD 81 (106)
Q Consensus 22 ~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~ 81 (106)
..|.| +.-+..+.++++.. .=|.||..+ ...++-.++.+..++..|++
T Consensus 24 k~Glt-----~~vi~~i~~~l~~~-----eLvKVk~~~--~~~~~~~~~~~~l~~~t~~~ 71 (84)
T PF01985_consen 24 KNGLT-----DGVIEEIDDALEKH-----ELVKVKVLG--NCREDRKEIAEQLAEKTGAE 71 (84)
T ss_dssp TTSS------HHHHHHHHHHHHHH-----SEEEEEETT----HHHHHHHHHHHHHHHTEE
T ss_pred CCCCC-----HHHHHHHHHHHHhC-----CeeEEEEcc--CCHHHHHHHHHHHHHHhCCE
Confidence 45788 88899999888753 678999976 58888888888888888875
No 362
>smart00052 EAL Putative diguanylate phosphodiesterase. Putative diguanylate phosphodiesterase, present in a variety of bacteria.
Probab=28.07 E-value=2.1e+02 Score=20.37 Aligned_cols=62 Identities=19% Similarity=0.154 Sum_probs=35.6
Q ss_pred hhCCCc-ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEe-ecCCCCCHHHHHHHHHHHHhhCCCCccC
Q psy969 9 FKGSNF-RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLK-PAGGISTFEDSVRWIYLVLIMLGPDWLN 84 (106)
Q Consensus 9 ~aGadF-KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiK-aaGGIrt~~~a~~~i~l~~~~lGa~w~~ 84 (106)
...+|| |-+-.+...-.. .+..+.+.+.+.++.+ ..+++ .+-||.|.++...+.+ +|.+|++
T Consensus 166 ~l~~d~iKld~~~~~~~~~-----~~~~~~~l~~l~~~~~----~~~~~via~gVe~~~~~~~l~~-----~Gi~~~Q 229 (241)
T smart00052 166 RLPVDLLKIDKSFVRDLQT-----DPEDEAIVQSIIELAQ----KLGLQVVAEGVETPEQLDLLRS-----LGCDYGQ 229 (241)
T ss_pred hCCCCeEEECHHHHhhhcc-----ChhHHHHHHHHHHHHH----HCCCeEEEecCCCHHHHHHHHH-----cCCCEEe
Confidence 345777 777665432222 2223334444444322 23333 3458999999999999 7987554
No 363
>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases. FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.
Probab=28.04 E-value=45 Score=25.44 Aligned_cols=28 Identities=14% Similarity=0.094 Sum_probs=25.1
Q ss_pred CCCCCHHHHHHHHHHHHhhCCCCccCCCceeEe
Q psy969 59 GGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIG 91 (106)
Q Consensus 59 GGIrt~~~a~~~i~l~~~~lGa~w~~~~~~RiG 91 (106)
+.|-|.+||...++ +|+++++|..-|+-
T Consensus 107 T~V~s~~Qa~~Aa~-----AGA~yvsP~vgR~~ 134 (211)
T cd00956 107 TAIFSAAQALLAAK-----AGATYVSPFVGRID 134 (211)
T ss_pred EEecCHHHHHHHHH-----cCCCEEEEecChHh
Confidence 56999999999999 79999999999963
No 364
>PRK00208 thiG thiazole synthase; Reviewed
Probab=27.99 E-value=62 Score=26.15 Aligned_cols=25 Identities=36% Similarity=0.585 Sum_probs=23.2
Q ss_pred CCCCCHHHHHHHHHHHHhhCCCCcc
Q psy969 59 GGISTFEDSVRWIYLVLIMLGPDWL 83 (106)
Q Consensus 59 GGIrt~~~a~~~i~l~~~~lGa~w~ 83 (106)
-|=+|.++|+..-.++++++|-+|+
T Consensus 70 aG~~ta~eAv~~a~lare~~~~~~i 94 (250)
T PRK00208 70 AGCRTAEEAVRTARLAREALGTNWI 94 (250)
T ss_pred CCCCCHHHHHHHHHHHHHHhCCCeE
Confidence 3689999999999999999999996
No 365
>PF11880 DUF3400: Domain of unknown function (DUF3400); InterPro: IPR021817 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 50 amino acids in length. This domain is found associated with PF02754 from PFAM, PF02913 from PFAM, PF01565 from PFAM.
Probab=27.87 E-value=27 Score=21.45 Aligned_cols=15 Identities=20% Similarity=0.550 Sum_probs=11.8
Q ss_pred HHHHHHhhCCCCccC
Q psy969 70 WIYLVLIMLGPDWLN 84 (106)
Q Consensus 70 ~i~l~~~~lGa~w~~ 84 (106)
.+++++.+||.+|..
T Consensus 15 VVEmA~~lLGe~W~~ 29 (45)
T PF11880_consen 15 VVEMARHLLGENWQQ 29 (45)
T ss_pred hHHHHHHHhhhhHHH
Confidence 367888999999863
No 366
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=27.83 E-value=2.1e+02 Score=23.70 Aligned_cols=27 Identities=19% Similarity=0.238 Sum_probs=21.3
Q ss_pred EeecCCCCCHHHHHHHHHHHHhhCCCCccCCCceeEecc
Q psy969 55 LKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGAS 93 (106)
Q Consensus 55 iKaaGGIrt~~~a~~~i~l~~~~lGa~w~~~~~~RiGtS 93 (106)
+-.-.|++|+++|++-++ +|++ -|+|.
T Consensus 122 ~~fmad~~~l~EAlrai~-----~Gad-------mI~Tt 148 (293)
T PRK04180 122 VPFVCGARNLGEALRRIA-----EGAA-------MIRTK 148 (293)
T ss_pred CCEEccCCCHHHHHHHHH-----CCCC-------eeecc
Confidence 334458999999999999 7997 66665
No 367
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=27.04 E-value=2e+02 Score=23.70 Aligned_cols=55 Identities=15% Similarity=0.089 Sum_probs=33.8
Q ss_pred hhHHHhhCCCc-ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCCc
Q psy969 4 PRKVAFKGSNF-RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDW 82 (106)
Q Consensus 4 ~~iai~aGadF-KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~w 82 (106)
++...++|+|+ - .|-. .+ | +..+...+|+ +..+-.-.+++|+++|++-++ +|+++
T Consensus 80 a~~L~eaGvDiID-aT~r----~r-----P--~~~~~~~iK~-------~~~~l~MAD~stleEal~a~~-----~Gad~ 135 (283)
T cd04727 80 AQILEALGVDMID-ESEV----LT-----P--ADEEHHIDKH-------KFKVPFVCGARNLGEALRRIS-----EGAAM 135 (283)
T ss_pred HHHHHHcCCCEEe-ccCC----CC-----c--HHHHHHHHHH-------HcCCcEEccCCCHHHHHHHHH-----CCCCE
Confidence 45778899999 5 4432 12 2 1222233332 113334458999999999999 79973
No 368
>cd00311 TIM Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate. The reaction is very efficient and requires neither cofactors nor metal ions. TIM, usually homodimeric, but in some organisms tetrameric, is ubiqitous and conserved in function across eukaryotes, bacteria and archaea.
Probab=26.72 E-value=3.1e+02 Score=21.46 Aligned_cols=61 Identities=16% Similarity=0.213 Sum_probs=42.7
Q ss_pred CCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhc----CCceeEeecCCCCCHHHHHHHHHHHHhhCCCCccCCCceeEec
Q psy969 17 LHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLS----GKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGA 92 (106)
Q Consensus 17 STG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~----~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~w~~~~~~RiGt 92 (106)
.||. .+| ++++..+.+.|+++-... ...+.|=--|+|+. +.+.+++++ + +-+-+-+|.
T Consensus 168 GtG~---~as-----~~~~~ev~~~ir~~l~~~~~~~~~~~~IlYGGSV~~-~N~~~l~~~-----~----~vDG~LVG~ 229 (242)
T cd00311 168 GTGK---TAS-----PEQAQEVHAFIRKLLAELYGEVAEKVRILYGGSVNP-ENAAELLAQ-----P----DIDGVLVGG 229 (242)
T ss_pred CCCC---CCC-----HHHHHHHHHHHHHHHHHhcccccCceeEEECCCCCH-HHHHHHhcC-----C----CCCEEEeeh
Confidence 4554 367 888888888887763322 24677777788888 999999983 3 134567887
Q ss_pred cch
Q psy969 93 SSL 95 (106)
Q Consensus 93 Ss~ 95 (106)
.|+
T Consensus 230 Asl 232 (242)
T cd00311 230 ASL 232 (242)
T ss_pred Hhh
Confidence 776
No 369
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=26.15 E-value=1.3e+02 Score=24.86 Aligned_cols=28 Identities=18% Similarity=0.220 Sum_probs=21.9
Q ss_pred eEeecCCCCCHHHHHHHHHHHHhhCCCCccCCCceeEecc
Q psy969 54 GLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGAS 93 (106)
Q Consensus 54 giKaaGGIrt~~~a~~~i~l~~~~lGa~w~~~~~~RiGtS 93 (106)
.+-.-.|++|+++|++=++ +|++ -|+|.
T Consensus 114 ~vpfmad~~~l~EAlrai~-----~Gad-------mI~Tt 141 (287)
T TIGR00343 114 KVPFVCGARDLGEALRRIN-----EGAA-------MIRTK 141 (287)
T ss_pred CCCEEccCCCHHHHHHHHH-----CCCC-------EEecc
Confidence 3444569999999999999 7997 66664
No 370
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=26.09 E-value=1.5e+02 Score=23.20 Aligned_cols=50 Identities=16% Similarity=0.114 Sum_probs=30.7
Q ss_pred chHHHHHHHHHHHHhhhcCCceeEeecCCCC---CHHHHHHHHHHHHhhCCCCccCCCc
Q psy969 32 NTCGIIMCSAIKHFHKLSGKKIGLKPAGGIS---TFEDSVRWIYLVLIMLGPDWLNKDL 87 (106)
Q Consensus 32 ~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIr---t~~~a~~~i~l~~~~lGa~w~~~~~ 87 (106)
+.+-.++.+.++...+ .+.+|-+|..-|+. +.+-|..+.+ .|++|++-+.
T Consensus 117 l~dp~~l~~iv~av~~-~~~PVsvKiR~~~~~~~~~~~a~~l~~-----aGad~i~Vd~ 169 (231)
T TIGR00736 117 LKNKELLKEFLTKMKE-LNKPIFVKIRGNCIPLDELIDALNLVD-----DGFDGIHVDA 169 (231)
T ss_pred cCCHHHHHHHHHHHHc-CCCcEEEEeCCCCCcchHHHHHHHHHH-----cCCCEEEEee
Confidence 3344455555554442 36789999998774 3344555555 7999975543
No 371
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=25.59 E-value=2.2e+02 Score=19.31 Aligned_cols=78 Identities=14% Similarity=0.088 Sum_probs=47.7
Q ss_pred hhHHHhhCCCc-ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCCc
Q psy969 4 PRKVAFKGSNF-RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDW 82 (106)
Q Consensus 4 ~~iai~aGadF-KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~w 82 (106)
.+.+.+.++|+ --|.- .+.+ .+.++-+.+.+++ ...+++.| ..||-...++..+|.+ +|.+
T Consensus 43 ~~~a~~~~~d~V~iS~~---~~~~-----~~~~~~~~~~L~~---~~~~~i~i-~~GG~~~~~~~~~~~~-----~G~d- 104 (122)
T cd02071 43 VEAAIQEDVDVIGLSSL---SGGH-----MTLFPEVIELLRE---LGAGDILV-VGGGIIPPEDYELLKE-----MGVA- 104 (122)
T ss_pred HHHHHHcCCCEEEEccc---chhh-----HHHHHHHHHHHHh---cCCCCCEE-EEECCCCHHHHHHHHH-----CCCC-
Confidence 35566778888 44432 1233 4455555555543 22234444 3466555677777888 7987
Q ss_pred cCCCceeEeccchHHHHHHHHh
Q psy969 83 LNKDLFRIGASSLLNNILQELE 104 (106)
Q Consensus 83 ~~~~~~RiGtSs~~~~l~~~l~ 104 (106)
.-|+.++....+...|.
T Consensus 105 -----~~~~~~~~~~~~~~~~~ 121 (122)
T cd02071 105 -----EIFGPGTSIEEIIDKIR 121 (122)
T ss_pred -----EEECCCCCHHHHHHHHh
Confidence 77899998888877664
No 372
>COG0214 SNZ1 Pyridoxine biosynthesis enzyme [Coenzyme metabolism]
Probab=25.39 E-value=2.4e+02 Score=23.39 Aligned_cols=25 Identities=32% Similarity=0.412 Sum_probs=21.2
Q ss_pred ceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969 52 KIGLKPAGGISTFEDSVRWIYLVLIMLGPD 81 (106)
Q Consensus 52 ~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~ 81 (106)
.|--=++|||-|+.||.-|++ ||+|
T Consensus 208 PVvnFAAGGvATPADAALMM~-----LGad 232 (296)
T COG0214 208 PVVNFAAGGVATPADAALMMQ-----LGAD 232 (296)
T ss_pred CeEeecccCcCChhHHHHHHH-----hCCC
Confidence 344458899999999999999 7997
No 373
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=25.28 E-value=2.4e+02 Score=22.33 Aligned_cols=37 Identities=11% Similarity=0.106 Sum_probs=28.5
Q ss_pred eeEeecCCCCCHHHHHHHHHHHHhhCCCCccCCCceeEecc
Q psy969 53 IGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGAS 93 (106)
Q Consensus 53 vgiKaaGGIrt~~~a~~~i~l~~~~lGa~w~~~~~~RiGtS 93 (106)
+-|=+-..+++++++.++++. -.++.++++..++|-=
T Consensus 241 ipi~~dE~~~~~~~~~~~i~~----~~~d~v~~k~~~~GGi 277 (357)
T cd03316 241 VPIAAGENLYTRWEFRDLLEA----GAVDIIQPDVTKVGGI 277 (357)
T ss_pred CCEEeccccccHHHHHHHHHh----CCCCEEecCccccCCH
Confidence 455555678999999999984 3578889999998743
No 374
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=25.13 E-value=2.1e+02 Score=22.92 Aligned_cols=62 Identities=13% Similarity=0.080 Sum_probs=38.5
Q ss_pred hhHHHhhCCCc-ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCCc
Q psy969 4 PRKVAFKGSNF-RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDW 82 (106)
Q Consensus 4 ~~iai~aGadF-KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~w 82 (106)
-+..++.|.|- -||=|... + .+-+..+.+.++. .++++ |=+-|||+.-+ +.++++ .|+.+
T Consensus 134 l~~l~~lG~~rILTSGg~~~--a------~~g~~~L~~lv~~----a~~~~-Im~GgGV~~~N-v~~l~~-----tG~~~ 194 (248)
T PRK11572 134 LKQLADLGVARILTSGQQQD--A------EQGLSLIMELIAA----SDGPI-IMAGAGVRLSN-LHKFLD-----AGVRE 194 (248)
T ss_pred HHHHHHcCCCEEECCCCCCC--H------HHHHHHHHHHHHh----cCCCE-EEeCCCCCHHH-HHHHHH-----cCCCE
Confidence 35567788888 88866421 1 4445555544432 35556 99999998655 444444 78876
Q ss_pred cC
Q psy969 83 LN 84 (106)
Q Consensus 83 ~~ 84 (106)
++
T Consensus 195 ~H 196 (248)
T PRK11572 195 VH 196 (248)
T ss_pred Ee
Confidence 64
No 375
>PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase
Probab=24.90 E-value=3.3e+02 Score=23.13 Aligned_cols=59 Identities=12% Similarity=0.058 Sum_probs=34.6
Q ss_pred hHHHhhCCCc-ccCCCCCC---CCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCC
Q psy969 5 RKVAFKGSNF-RTLHGRGP---DSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGP 80 (106)
Q Consensus 5 ~iai~aGadF-KTSTG~~~---~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa 80 (106)
+.|.+.|+|| +-|.=|.+ ++.. +-..+.+.+..+ ..++-|=+-|||. .+.+.++++ +|+
T Consensus 404 ~~a~~~gadyi~~gpif~t~tk~~~~-----~~g~~~~~~~~~------~~~~Pv~aiGGI~-~~~~~~~~~-----~G~ 466 (502)
T PLN02898 404 EQAWKDGADYIGCGGVFPTNTKANNK-----TIGLDGLREVCE------ASKLPVVAIGGIS-ASNAASVME-----SGA 466 (502)
T ss_pred HHHhhcCCCEEEECCeecCCCCCCCC-----CCCHHHHHHHHH------cCCCCEEEECCCC-HHHHHHHHH-----cCC
Confidence 3566789999 85543321 1111 223344433321 1346677789995 889999998 687
No 376
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=24.88 E-value=3e+02 Score=20.50 Aligned_cols=66 Identities=17% Similarity=0.111 Sum_probs=42.1
Q ss_pred hhHHHhhCCCc-ccCCCCCCCCCCCCCCCchH-HHHHHHHHH---HHhhhcCCceeEeec-------CCCCCHHHHHHHH
Q psy969 4 PRKVAFKGSNF-RTLHGRGPDSTSYGNVCNTC-GIIMCSAIK---HFHKLSGKKIGLKPA-------GGISTFEDSVRWI 71 (106)
Q Consensus 4 ~~iai~aGadF-KTSTG~~~~gat~~~~~~~~-v~lm~~~i~---~~~~~~~~~vgiKaa-------GGIrt~~~a~~~i 71 (106)
.++|-+.|+.. .+.+|+.+...+ .+. -+.+.+.++ ++.+..+-++.+.+- -.+.|.+++.+++
T Consensus 90 i~~a~~lg~~~i~~~~g~~~~~~~-----~~~~~~~~~~~l~~l~~~A~~~gi~l~lE~~~~~~~~~~~l~t~~~~~~li 164 (254)
T TIGR03234 90 IAYARALGCPQVNCLAGKRPAGVS-----PEEARATLVENLRYAADALDRIGLTLLIEPINSFDMPGFFLTTTEQALAVI 164 (254)
T ss_pred HHHHHHhCCCEEEECcCCCCCCCC-----HHHHHHHHHHHHHHHHHHHHhcCCEEEEEECCcccCCCChhcCHHHHHHHH
Confidence 45677889999 888887654433 332 233333333 333445667888862 2478999999999
Q ss_pred HHH
Q psy969 72 YLV 74 (106)
Q Consensus 72 ~l~ 74 (106)
+.+
T Consensus 165 ~~v 167 (254)
T TIGR03234 165 DDV 167 (254)
T ss_pred HHh
Confidence 863
No 377
>PRK12656 fructose-6-phosphate aldolase; Reviewed
Probab=24.87 E-value=1.9e+02 Score=22.61 Aligned_cols=28 Identities=25% Similarity=0.182 Sum_probs=22.2
Q ss_pred CCCHHHHHHHHHHHHhhCCCCccCCCceeEecc
Q psy969 61 ISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGAS 93 (106)
Q Consensus 61 Irt~~~a~~~i~l~~~~lGa~w~~~~~~RiGtS 93 (106)
|=|.+||..-.+ +|+++++|-.-|+-..
T Consensus 113 ifs~~Qa~~Aa~-----aGa~yvsPyvgRi~d~ 140 (222)
T PRK12656 113 IYTVFQGLLAIE-----AGADYLAPYYNRMENL 140 (222)
T ss_pred eCCHHHHHHHHH-----CCCCEEecccchhhhc
Confidence 456688877777 8999999999997443
No 378
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=24.71 E-value=1.7e+02 Score=24.12 Aligned_cols=20 Identities=25% Similarity=0.179 Sum_probs=17.2
Q ss_pred CCCCCHHHHHHHHHHHHhhCCCCcc
Q psy969 59 GGISTFEDSVRWIYLVLIMLGPDWL 83 (106)
Q Consensus 59 GGIrt~~~a~~~i~l~~~~lGa~w~ 83 (106)
|-|.|.++|+.+++ +|++.+
T Consensus 146 g~V~t~e~a~~l~~-----aGad~i 165 (326)
T PRK05458 146 GNVGTPEAVRELEN-----AGADAT 165 (326)
T ss_pred EecCCHHHHHHHHH-----cCcCEE
Confidence 45779999999999 799864
No 379
>TIGR00677 fadh2_euk methylenetetrahydrofolate reductase, eukaryotic type. This protein is an FAD-containing flavoprotein.
Probab=24.69 E-value=1.8e+02 Score=23.15 Aligned_cols=14 Identities=21% Similarity=0.045 Sum_probs=11.2
Q ss_pred HhhCCCc-ccCCCCC
Q psy969 8 AFKGSNF-RTLHGRG 21 (106)
Q Consensus 8 i~aGadF-KTSTG~~ 21 (106)
+++|||| -|=--|-
T Consensus 158 i~aGA~f~iTQ~~Fd 172 (281)
T TIGR00677 158 VDAGADFIITQLFYD 172 (281)
T ss_pred HHcCCCEeeccceec
Confidence 4699999 9888774
No 380
>cd03327 MR_like_2 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 2. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=24.46 E-value=3.7e+02 Score=21.50 Aligned_cols=19 Identities=16% Similarity=0.237 Sum_probs=12.3
Q ss_pred CHHHHHHHHHHHHhhCCCC
Q psy969 63 TFEDSVRWIYLVLIMLGPD 81 (106)
Q Consensus 63 t~~~a~~~i~l~~~~lGa~ 81 (106)
+.++.++.++++++.+|.+
T Consensus 153 ~~~~d~~~v~avr~~~g~~ 171 (341)
T cd03327 153 GLRKNVELVRAIREAVGYD 171 (341)
T ss_pred HHHHHHHHHHHHHHHhCCC
Confidence 3456667777777777754
No 381
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=24.20 E-value=3.4e+02 Score=22.39 Aligned_cols=70 Identities=19% Similarity=0.125 Sum_probs=0.0
Q ss_pred hhHHHhhCCCc--ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCC---CHHHHHHHHHHHHhhC
Q psy969 4 PRKVAFKGSNF--RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGIS---TFEDSVRWIYLVLIML 78 (106)
Q Consensus 4 ~~iai~aGadF--KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIr---t~~~a~~~i~l~~~~l 78 (106)
+..|+++||++ -|-.|.+ --.||++.|.+-.+++.. .|+. +++...++-+.+++.+
T Consensus 206 ~laAv~aGa~~vd~tv~GlG---eraGNa~lE~vv~~L~~~----------------~g~~~~idl~~l~~~s~~v~~~~ 266 (378)
T PRK11858 206 ALAGIEAGAKQVHTTVNGLG---ERAGNAALEEVVMALKYL----------------YGIDLGIDTERLYELSRLVSKAS 266 (378)
T ss_pred HHHHHHcCCCEEEEeecccc---ccccCccHHHHHHHHHHH----------------hCCCCCcCHHHHHHHHHHHHHHh
Q ss_pred CCCccCCCceeEecc
Q psy969 79 GPDWLNKDLFRIGAS 93 (106)
Q Consensus 79 Ga~w~~~~~~RiGtS 93 (106)
|.. +.|+.--+|.+
T Consensus 267 ~~~-~~~~~pivG~~ 280 (378)
T PRK11858 267 GIP-VPPNKAIVGEN 280 (378)
T ss_pred CcC-CCCCCccccch
No 382
>COG3618 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=24.19 E-value=2.2e+02 Score=23.33 Aligned_cols=31 Identities=19% Similarity=0.167 Sum_probs=25.7
Q ss_pred CCceeEeecCCC------CCHHHHHHHHHHHHhhCCC
Q psy969 50 GKKIGLKPAGGI------STFEDSVRWIYLVLIMLGP 80 (106)
Q Consensus 50 ~~~vgiKaaGGI------rt~~~a~~~i~l~~~~lGa 80 (106)
.+.+=+|.||=+ .+.+++..|.+-+.+.+|.
T Consensus 192 ~pNv~~KlSG~~~~~~~~w~~~~v~p~~e~~i~~fg~ 228 (279)
T COG3618 192 RPNVWAKLSGVYAYSDESWTVEDVRPYVEELIELFGW 228 (279)
T ss_pred CCCeEEEEeeecccccCCCCHHHHHHHHHHHHHhcCc
Confidence 578999999911 3689999999999999985
No 383
>PLN02540 methylenetetrahydrofolate reductase
Probab=23.98 E-value=1.9e+02 Score=25.87 Aligned_cols=53 Identities=9% Similarity=0.023 Sum_probs=29.4
Q ss_pred HhhCCCc-ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHH
Q psy969 8 AFKGSNF-RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYL 73 (106)
Q Consensus 8 i~aGadF-KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l 73 (106)
+++|||| -|=--|- .+...-+.+.+++.--..+=-.||- .|.++..+..+.++
T Consensus 166 vdAGAdFiITQlfFD----------~d~f~~f~~~~r~~Gi~vPIipGIm---PI~S~k~l~r~~~l 219 (565)
T PLN02540 166 VDAGADLIITQLFYD----------TDIFLKFVNDCRQIGITCPIVPGIM---PINNYKGFLRMTGF 219 (565)
T ss_pred HHcCCCEEeeccccC----------HHHHHHHHHHHHhcCCCCCEEeeec---ccCCHHHHHHHHhc
Confidence 5789999 9877664 4444444444443200011123443 37788877777653
No 384
>PF08442 ATP-grasp_2: ATP-grasp domain; InterPro: IPR013650 The ATP-grasp superfamily currently includes 17 groups of enzymes, catalyzing ATP-dependent ligation of a carboxylate containing molecule to an amino or thiol group-containing molecule []. They contribute predominantly to macromolecular synthesis. ATP-hydrolysis is used to activate a substrate. For example, DD-ligase transfers phosphate from ATP to D-alanine on the first step of catalysis. On the second step the resulting acylphosphate is attacked by a second D-alanine to produce a DD dipeptide following phosphate elimination []. The ATP-grasp domain contains three conserved motifs, corresponding to the phosphate binding loop and the Mg(2+) binding site []. The fold is characterised by two alpha-beta subdomains that grasp the ATP molecule between them. Each subdomain provides a variable loop that forms a part of the active site, completed by region of other domains not conserved between the various ATP-grasp enzymes []. The ATP-grasp domain represented by this entry is found primarily in succinyl-CoA synthetases (6.2.1.5 from EC).; PDB: 3PFF_A 3MWD_A 3MWE_A 1CQI_E 1SCU_B 2NU9_G 2NU6_E 1CQJ_E 2NU7_B 1JLL_E ....
Probab=23.94 E-value=58 Score=24.93 Aligned_cols=44 Identities=20% Similarity=0.191 Sum_probs=27.2
Q ss_pred chHHHHHHHHHHHHhhhcCCceeEee---------cCCCCCHHHHHHHHHHHHhhCCCC
Q psy969 32 NTCGIIMCSAIKHFHKLSGKKIGLKP---------AGGISTFEDSVRWIYLVLIMLGPD 81 (106)
Q Consensus 32 ~~~v~lm~~~i~~~~~~~~~~vgiKa---------aGGIrt~~~a~~~i~l~~~~lGa~ 81 (106)
+++++-..+.+ ..+++-||| +|||+-.++..+..+.+++++|..
T Consensus 27 ~eea~~~~~~l------~~~~~VvKaQvl~GgRGK~GgVk~~~s~~ea~~~a~~mlg~~ 79 (202)
T PF08442_consen 27 PEEAREAAKEL------GGKPLVVKAQVLAGGRGKAGGVKIAKSPEEAKEAAKEMLGKT 79 (202)
T ss_dssp HHHHHHHHHHH------TTSSEEEEE-SSSSTTTTTTCEEEESSHHHHHHHHHTTTTSE
T ss_pred HHHHHHHHHHh------CCCcEEEEEeEeecCcccCCceeecCCHHHHHHHHHHHhCCc
Confidence 55665554433 245678888 789865544444455556889984
No 385
>PRK12346 transaldolase A; Provisional
Probab=23.85 E-value=3.2e+02 Score=22.64 Aligned_cols=32 Identities=22% Similarity=0.136 Sum_probs=23.4
Q ss_pred HHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969 42 IKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD 81 (106)
Q Consensus 42 i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~ 81 (106)
|.+|++..+-+..|.+|. +|+.+|.. .+ +|++
T Consensus 208 i~~~~k~~~~~T~Vm~AS-fRn~~qi~---al----aG~d 239 (316)
T PRK12346 208 IYDYYKQHRYETIVMGAS-FRRTEQIL---AL----AGCD 239 (316)
T ss_pred HHHHHHHcCCCcEEEecc-cCCHHHHH---HH----hCCC
Confidence 344555567789999974 99999888 22 5987
No 386
>PF08827 DUF1805: Domain of unknown function (DUF1805); InterPro: IPR014931 This protein is found in bacteria and archaea and has an N-terminal tetramerisation region that is composed of beta sheets. ; PDB: 1QW2_A.
Probab=23.60 E-value=1e+02 Score=19.77 Aligned_cols=18 Identities=22% Similarity=0.316 Sum_probs=9.3
Q ss_pred CceeEeecCCCCCHHHHHH
Q psy969 51 KKIGLKPAGGISTFEDSVR 69 (106)
Q Consensus 51 ~~vgiKaaGGIrt~~~a~~ 69 (106)
+.+-.|+. ||||+||.++
T Consensus 14 g~~A~rv~-GV~t~edlL~ 31 (59)
T PF08827_consen 14 GIAAARVR-GVRTIEDLLE 31 (59)
T ss_dssp T--EEE---S--SHHHHHH
T ss_pred CCceEEEe-ccCCHHHHHh
Confidence 56777887 7999998764
No 387
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=23.56 E-value=3.1e+02 Score=20.30 Aligned_cols=46 Identities=20% Similarity=0.079 Sum_probs=31.7
Q ss_pred chHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCC
Q psy969 32 NTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGP 80 (106)
Q Consensus 32 ~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa 80 (106)
++.+.-+.+.+.++ -...+.|+=+-|+-++++..+++..+++.++.
T Consensus 136 ~~~~~~~~~~~~~~---g~~~i~l~Dt~G~~~P~~v~~lv~~~~~~~~~ 181 (237)
T PF00682_consen 136 PEELLELAEALAEA---GADIIYLADTVGIMTPEDVAELVRALREALPD 181 (237)
T ss_dssp HHHHHHHHHHHHHH---T-SEEEEEETTS-S-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHc---CCeEEEeeCccCCcCHHHHHHHHHHHHHhccC
Confidence 55555444444443 45679999999999999999999998888774
No 388
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=23.40 E-value=2.6e+02 Score=20.69 Aligned_cols=39 Identities=18% Similarity=0.093 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969 34 CGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD 81 (106)
Q Consensus 34 ~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~ 81 (106)
.+.-|.+.++++ -.+.+- =..||+-..++..++-+ .|.+
T Consensus 79 l~~~lve~lre~---G~~~i~-v~~GGvip~~d~~~l~~-----~G~~ 117 (143)
T COG2185 79 LVPGLVEALREA---GVEDIL-VVVGGVIPPGDYQELKE-----MGVD 117 (143)
T ss_pred HHHHHHHHHHHh---CCcceE-EeecCccCchhHHHHHH-----hCcc
Confidence 444444554443 334454 36699999999888888 6886
No 389
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=23.39 E-value=64 Score=27.80 Aligned_cols=24 Identities=17% Similarity=0.045 Sum_probs=20.2
Q ss_pred eEeecCCCCCHHHHHHHHHHHHhhCCCCcc
Q psy969 54 GLKPAGGISTFEDSVRWIYLVLIMLGPDWL 83 (106)
Q Consensus 54 giKaaGGIrt~~~a~~~i~l~~~~lGa~w~ 83 (106)
.||. .||++.+||....+ +|+||+
T Consensus 258 ~vKI-CGit~~eda~~a~~-----~GaD~l 281 (454)
T PRK09427 258 ENKV-CGLTRPQDAKAAYD-----AGAVYG 281 (454)
T ss_pred cccc-CCCCCHHHHHHHHh-----CCCCEE
Confidence 5788 56999999999999 688763
No 390
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=23.27 E-value=3.4e+02 Score=20.57 Aligned_cols=58 Identities=16% Similarity=0.081 Sum_probs=36.5
Q ss_pred hhHHHhhCCCc--ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969 4 PRKVAFKGSNF--RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD 81 (106)
Q Consensus 4 ~~iai~aGadF--KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~ 81 (106)
++.++++|... -|-+. +...+.+++..++| +.++-|= +|.|-+.+|+...++ +|++
T Consensus 28 ~~a~~~gGi~~iEvt~~~------------~~~~~~i~~l~~~~----~~~~~iG-aGTV~~~~~~~~a~~-----aGA~ 85 (206)
T PRK09140 28 VGALIEAGFRAIEIPLNS------------PDPFDSIAALVKAL----GDRALIG-AGTVLSPEQVDRLAD-----AGGR 85 (206)
T ss_pred HHHHHHCCCCEEEEeCCC------------ccHHHHHHHHHHHc----CCCcEEe-EEecCCHHHHHHHHH-----cCCC
Confidence 46677888887 55432 22333333333333 4344333 499999999999999 7998
Q ss_pred cc
Q psy969 82 WL 83 (106)
Q Consensus 82 w~ 83 (106)
++
T Consensus 86 fi 87 (206)
T PRK09140 86 LI 87 (206)
T ss_pred EE
Confidence 53
No 391
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=23.20 E-value=2.7e+02 Score=21.49 Aligned_cols=31 Identities=16% Similarity=0.019 Sum_probs=24.3
Q ss_pred cCCceeEeecCCCCCHHHHHHHHHHHHhhCC
Q psy969 49 SGKKIGLKPAGGISTFEDSVRWIYLVLIMLG 79 (106)
Q Consensus 49 ~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lG 79 (106)
--..+.|+=+.|+-++++..+++..+++.++
T Consensus 156 G~~~i~l~DT~G~~~P~~v~~lv~~l~~~~~ 186 (268)
T cd07940 156 GATTINIPDTVGYLTPEEFGELIKKLKENVP 186 (268)
T ss_pred CCCEEEECCCCCCCCHHHHHHHHHHHHHhCC
Confidence 3457888888888888888888888777665
No 392
>PLN02979 glycolate oxidase
Probab=23.14 E-value=1.5e+02 Score=25.10 Aligned_cols=37 Identities=22% Similarity=0.025 Sum_probs=29.3
Q ss_pred chHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCCcc
Q psy969 32 NTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWL 83 (106)
Q Consensus 32 ~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~w~ 83 (106)
-++++-+++. .+.++-|| ||-+.++|...++ +|++.+
T Consensus 212 W~dl~wlr~~-------~~~PvivK---gV~~~~dA~~a~~-----~Gvd~I 248 (366)
T PLN02979 212 WKDVQWLQTI-------TKLPILVK---GVLTGEDARIAIQ-----AGAAGI 248 (366)
T ss_pred HHHHHHHHhc-------cCCCEEee---cCCCHHHHHHHHh-----cCCCEE
Confidence 6677766653 56789888 5779999999999 799874
No 393
>COG1391 GlnE Glutamine synthetase adenylyltransferase [Posttranslational modification, protein turnover, chaperones / Signal transduction mechanisms]
Probab=22.84 E-value=97 Score=29.62 Aligned_cols=45 Identities=27% Similarity=0.195 Sum_probs=30.4
Q ss_pred chHHHHHHHHHHHHhhh---cCCceeEeecCCCCCHHHHHHHHHHHHhhCCC
Q psy969 32 NTCGIIMCSAIKHFHKL---SGKKIGLKPAGGISTFEDSVRWIYLVLIMLGP 80 (106)
Q Consensus 32 ~~~v~lm~~~i~~~~~~---~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa 80 (106)
+++++.|+..|.+.... .+..|++= +||||..|-..+..+++ .|-
T Consensus 309 I~~ir~mKr~I~~ev~~~~v~~~NiKLG-~GGIREIEF~vQ~~QLI---~Gg 356 (963)
T COG1391 309 IADLRAMKRQIEAEVRRRGVKGDNIKLG-RGGIREVEFIVQVFQLI---RGG 356 (963)
T ss_pred HHHHHHHHHHHHHHhccccccccccccC-CCCceehhhHHHHHHHH---HcC
Confidence 56899999988765211 12233333 59999999888888875 554
No 394
>cd00439 Transaldolase Transaldolase. Enzymes found in the non-oxidative branch of the pentose phosphate pathway, that catalyze the reversible transfer of a dihydroxyacetone group from fructose-6-phosphate to erythrose-4-phosphate yielding sedoheptulose-7-phosphate and glyceraldehyde-3-phosphate. They are members of the class I aldolases, who are characterized by using a Schiff-base mechanism for stabilization of the reaction intermediates.
Probab=22.76 E-value=1.1e+02 Score=24.19 Aligned_cols=53 Identities=23% Similarity=0.138 Sum_probs=39.6
Q ss_pred hHHHHHHHHHHHHhhhcC-CceeEeec--------------CCCC-------CHHHHHHHHHHHHhhCCCCccCCCceeE
Q psy969 33 TCGIIMCSAIKHFHKLSG-KKIGLKPA--------------GGIS-------TFEDSVRWIYLVLIMLGPDWLNKDLFRI 90 (106)
Q Consensus 33 ~~v~lm~~~i~~~~~~~~-~~vgiKaa--------------GGIr-------t~~~a~~~i~l~~~~lGa~w~~~~~~Ri 90 (106)
.+.+.|.+..+++++..+ +++-||.- =||+ |++|+..-.+ +|+.+++|..-|+
T Consensus 97 ~d~~~mi~~A~~l~~~~~~~nv~IKIPaT~~Gl~A~~~L~~~GI~vn~T~vfs~~Qa~~aa~-----Aga~~ispfvgRi 171 (252)
T cd00439 97 DDTQGMVEAAKYLSKVVNRRNIYIKIPATAEGIPAIKDLIAAGISVNVTLIFSIAQYEAVAD-----AGTSVASPFVSRI 171 (252)
T ss_pred CCHHHHHHHHHHHHHhcCcccEEEEeCCCHHHHHHHHHHHHCCCceeeeeecCHHHHHHHHH-----cCCCEEEEeccHH
Confidence 567777777777777665 46777752 2455 5688888888 7999999999887
No 395
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=22.72 E-value=1.7e+02 Score=24.62 Aligned_cols=38 Identities=21% Similarity=0.025 Sum_probs=29.6
Q ss_pred CchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCCcc
Q psy969 31 CNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWL 83 (106)
Q Consensus 31 ~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~w~ 83 (106)
+-++++-+++. .+.+|-|| ||-+.++|+..++ +|++.+
T Consensus 212 tW~di~wlr~~-------~~~PiivK---gV~~~~dA~~a~~-----~Gvd~I 249 (367)
T PLN02493 212 SWKDVQWLQTI-------TKLPILVK---GVLTGEDARIAIQ-----AGAAGI 249 (367)
T ss_pred CHHHHHHHHhc-------cCCCEEee---cCCCHHHHHHHHH-----cCCCEE
Confidence 36777777654 56789888 5789999999999 799853
No 396
>PRK05269 transaldolase B; Provisional
Probab=22.65 E-value=4.4e+02 Score=21.68 Aligned_cols=32 Identities=25% Similarity=0.240 Sum_probs=23.1
Q ss_pred HHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969 42 IKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD 81 (106)
Q Consensus 42 i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~ 81 (106)
|.++++..+-+..|.+| .+|+.++..+ + +|++
T Consensus 209 i~~~~k~~~~~t~im~A-Sfrn~~~v~~---l----aG~d 240 (318)
T PRK05269 209 IYNYYKKHGYKTVVMGA-SFRNTGQILE---L----AGCD 240 (318)
T ss_pred HHHHHHHcCCCceEEee-ccCCHHHHHH---H----hCCC
Confidence 33455555677889887 6999998887 2 4987
No 397
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=22.59 E-value=4.4e+02 Score=21.75 Aligned_cols=76 Identities=16% Similarity=0.113 Sum_probs=39.2
Q ss_pred hhHHHhhCCCc-ccCCCCCCCCCC---CCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCC
Q psy969 4 PRKVAFKGSNF-RTLHGRGPDSTS---YGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLG 79 (106)
Q Consensus 4 ~~iai~aGadF-KTSTG~~~~gat---~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lG 79 (106)
++.+.++|+|+ --.-+. |.... .+....++-..+.+.++...+.+...+-+|.+-.+.+..+..+.++. .|
T Consensus 119 a~~~~~~g~d~ielN~sc-P~~~~~~~~g~~~~~~~~~~~~i~~~v~~~~~~Pv~vKl~p~~~~~~~~a~~~~~----~G 193 (420)
T PRK08318 119 APLVEETGADGIELNFGC-PHGMSERGMGSAVGQVPELVEMYTRWVKRGSRLPVIVKLTPNITDIREPARAAKR----GG 193 (420)
T ss_pred HHHHHhcCCCEEEEeCCC-CCCccccCCcccccCCHHHHHHHHHHHHhccCCcEEEEcCCCcccHHHHHHHHHH----CC
Confidence 34556678888 544432 21110 11111233344444444444446678999999766655443332222 68
Q ss_pred CCccC
Q psy969 80 PDWLN 84 (106)
Q Consensus 80 a~w~~ 84 (106)
++++.
T Consensus 194 adgi~ 198 (420)
T PRK08318 194 ADAVS 198 (420)
T ss_pred CCEEE
Confidence 88765
No 398
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=22.38 E-value=3.6e+02 Score=20.63 Aligned_cols=24 Identities=17% Similarity=0.181 Sum_probs=20.0
Q ss_pred ceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969 52 KIGLKPAGGISTFEDSVRWIYLVLIMLGPD 81 (106)
Q Consensus 52 ~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~ 81 (106)
.+-|=|-||| +.+++.+.++ .|++
T Consensus 164 ~iPvvAIGGI-~~~n~~~~~~-----~GA~ 187 (221)
T PRK06512 164 EIPCIVQAGS-DLASAVEVAE-----TGAE 187 (221)
T ss_pred CCCEEEEeCC-CHHHHHHHHH-----hCCC
Confidence 4667788999 8999999998 6985
No 399
>cd06660 Aldo_ket_red Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. AKRs are present in all phyla and are of importance to both health and industrial applications. Members have very distinct functions and include the prokaryotic 2,5-diketo-D-gluconic acid reductases and beta-keto ester reductases, the eukaryotic aldose reductases, aldehyde reductases, hydroxysteroid dehydrogenases, steroid 5beta-reductases, potassium channel beta-subunits and aflatoxin aldehyde reductases, among others.
Probab=22.35 E-value=3.4e+02 Score=20.32 Aligned_cols=69 Identities=25% Similarity=0.193 Sum_probs=44.5
Q ss_pred hhHHHhhCCCc-ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCC--ceeEeecCCC------CCHHHHHHHHHHH
Q psy969 4 PRKVAFKGSNF-RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGK--KIGLKPAGGI------STFEDSVRWIYLV 74 (106)
Q Consensus 4 ~~iai~aGadF-KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~--~vgiKaaGGI------rt~~~a~~~i~l~ 74 (106)
.+.|++.|.+| =|+..|+. |.+ . ++|-++++++. ... .|--|.. -. .+.+.+.+-++..
T Consensus 35 l~~A~~~Gi~~iDTA~~Yg~-g~s-----E---~~lG~al~~~~--~R~~~~i~tK~~-~~~~~~~~~~~~~~~~~l~~s 102 (285)
T cd06660 35 VRAALDAGINFIDTADVYGD-GES-----E---ELLGEALKERG--PREEVFIATKVG-PRPGDGRDLSPEHIRRAVEES 102 (285)
T ss_pred HHHHHHcCCCeEECccccCC-CCC-----H---HHHHHHHhccC--CcCcEEEEeeec-CCCCCCCCCCHHHHHHHHHHH
Confidence 35788999999 99998874 333 2 34444444331 012 3555652 22 2688899989888
Q ss_pred HhhCCCCccC
Q psy969 75 LIMLGPDWLN 84 (106)
Q Consensus 75 ~~~lGa~w~~ 84 (106)
.+.||.++++
T Consensus 103 L~~L~~~~iD 112 (285)
T cd06660 103 LKRLGTDYID 112 (285)
T ss_pred HHHhCCCcee
Confidence 8889987654
No 400
>PF00248 Aldo_ket_red: Aldo/keto reductase family; InterPro: IPR023210 The aldo-keto reductase family includes a number of related monomeric NADPH-dependent oxidoreductases, such as aldehyde reductase, aldose reductase, prostaglandin F synthase, xylose reductase, rho crystallin, and many others []. All possess a similar structure, with a beta-alpha-beta fold characteristic of nucleotide binding proteins []. The fold comprises a parallel beta-8/alpha-8-barrel, which contains a novel NADP-binding motif. The binding site is located in a large, deep, elliptical pocket in the C-terminal end of the beta sheet, the substrate being bound in an extended conformation. The hydrophobic nature of the pocket favours aromatic and apolar substrates over highly polar ones []. Binding of the NADPH coenzyme causes a massive conformational change, reorienting a loop, effectively locking the coenzyme in place. This binding is more similar to FAD- than to NAD(P)-binding oxidoreductases []. Some proteins of this entry contain a K+ ion channel beta chain regulatory domain; these are reported to have oxidoreductase activity []. This entry represents the NADP-dependent oxidoreductase domain found in these proteins.; PDB: 1C9W_A 4F40_B 1VBJ_A 1XGD_A 1X97_A 2ACS_A 1EF3_A 2ACU_A 1PWM_A 2NVD_A ....
Probab=22.35 E-value=1.4e+02 Score=22.47 Aligned_cols=72 Identities=21% Similarity=0.162 Sum_probs=45.5
Q ss_pred hhHHHhhCCCc-ccCCCCCCCCCCCCCCCchHHHHHHHHHHHH-hhhcCCceeEee-----cCCCCCHHHHHHHHHHHHh
Q psy969 4 PRKVAFKGSNF-RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHF-HKLSGKKIGLKP-----AGGISTFEDSVRWIYLVLI 76 (106)
Q Consensus 4 ~~iai~aGadF-KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~-~~~~~~~vgiKa-----aGGIrt~~~a~~~i~l~~~ 76 (106)
-+.|.+.|.+| -|+..|+. |-+ . +++-+++++. ...-.--|.-|. ..--.+.+...+-++...+
T Consensus 23 l~~a~~~Gin~~DtA~~Y~~-g~s-----E---~~lg~~l~~~~~~r~~~~i~tK~~~~~~~~~~~~~~~i~~~~~~sL~ 93 (283)
T PF00248_consen 23 LRRALEAGINFFDTADSYGN-GRS-----E---RILGRALRKSRVPRDDIFISTKVYGDGKPEPDYSPDSIRESLERSLE 93 (283)
T ss_dssp HHHHHHTT--EEEECGGGGG-GTH-----H---HHHHHHHHHTSSTGGGSEEEEEEESSSSTGGGSSHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCeecccccccc-ccc-----c---ccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 35788999999 99999842 222 2 2344555441 000122477788 5667788888888888888
Q ss_pred hCCCCccC
Q psy969 77 MLGPDWLN 84 (106)
Q Consensus 77 ~lGa~w~~ 84 (106)
.||.+|+|
T Consensus 94 ~L~~d~iD 101 (283)
T PF00248_consen 94 RLGTDYID 101 (283)
T ss_dssp HHTSSSEE
T ss_pred cccccchh
Confidence 89987653
No 401
>PRK14847 hypothetical protein; Provisional
Probab=22.10 E-value=3.8e+02 Score=22.34 Aligned_cols=70 Identities=17% Similarity=0.089 Sum_probs=44.2
Q ss_pred hhHHHhhCCCc--ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969 4 PRKVAFKGSNF--RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD 81 (106)
Q Consensus 4 ~~iai~aGadF--KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~ 81 (106)
+..|+++||++ -|-.|.+. -.||...|.+-.++.. .|++. || +++...++-+++++..|-.
T Consensus 258 slaA~~aGa~~i~~tv~G~GE---RaGNa~lE~v~~~L~~-----------~g~~~--~i-d~~~l~~~~~~v~~~sg~~ 320 (333)
T PRK14847 258 AELAVLAGAERIEGCLFGNGE---RTGNVDLVALALNLER-----------QGIAS--GL-DFRDMAALRACVSECNQLP 320 (333)
T ss_pred HHHHHHhCCCEEEeeCCcCCc---cccchhHHHHHHHHHh-----------cCCCC--Cc-CHHHHHHHHHHHHHHhCCC
Confidence 34688999999 67777653 2345557776555421 13332 34 3777777777788888875
Q ss_pred ccCCCceeEe
Q psy969 82 WLNKDLFRIG 91 (106)
Q Consensus 82 w~~~~~~RiG 91 (106)
+.|+.-.+|
T Consensus 321 -v~~~kPivg 329 (333)
T PRK14847 321 -IDVFHPYAW 329 (333)
T ss_pred -CCCCCCeec
Confidence 666655554
No 402
>COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism]
Probab=21.96 E-value=1.5e+02 Score=24.91 Aligned_cols=65 Identities=22% Similarity=0.230 Sum_probs=41.3
Q ss_pred hhhHHHhhC-CCc-ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCC
Q psy969 3 RPRKVAFKG-SNF-RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGP 80 (106)
Q Consensus 3 ~~~iai~aG-adF-KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa 80 (106)
.++.+.+.| ..| -=+.|+. .+-. ++.|.-|.+.|++ ..+ +-+=++=|+-+.+|+.++.+ +|.
T Consensus 92 ~Ak~ak~~Ga~r~c~~aagr~-~~~~-----~~~i~~~v~~Vk~---~~~--le~c~slG~l~~eq~~~L~~-----aGv 155 (335)
T COG0502 92 AAKKAKAAGATRFCMGAAGRG-PGRD-----MEEVVEAIKAVKE---ELG--LEVCASLGMLTEEQAEKLAD-----AGV 155 (335)
T ss_pred HHHHHHHcCCceEEEEEeccC-CCcc-----HHHHHHHHHHHHH---hcC--cHHhhccCCCCHHHHHHHHH-----cCh
Confidence 356777788 667 5566665 4444 5555555555542 122 33334558999999999999 688
Q ss_pred Ccc
Q psy969 81 DWL 83 (106)
Q Consensus 81 ~w~ 83 (106)
+..
T Consensus 156 d~y 158 (335)
T COG0502 156 DRY 158 (335)
T ss_pred hhe
Confidence 754
No 403
>KOG1799|consensus
Probab=21.80 E-value=1.2e+02 Score=26.55 Aligned_cols=25 Identities=32% Similarity=0.567 Sum_probs=21.0
Q ss_pred ceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969 52 KIGLKPAGGISTFEDSVRWIYLVLIMLGPD 81 (106)
Q Consensus 52 ~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~ 81 (106)
..-|-+-|||.|.+++.+||- +|+.
T Consensus 356 ~F~l~~~GGvEt~~~~~~Fil-----~Gs~ 380 (471)
T KOG1799|consen 356 EFSLSGIGGVETGYDAAEFIL-----LGSN 380 (471)
T ss_pred cCccccccCcccccchhhHhh-----cCCc
Confidence 444888899999999999998 6774
No 404
>PRK07157 acetate kinase; Provisional
Probab=21.53 E-value=1.7e+02 Score=25.05 Aligned_cols=70 Identities=24% Similarity=0.308 Sum_probs=45.4
Q ss_pred chhhHHHhhCCCcccCCCCCC-CC----CCCCCCCchHHHHHHHH----HHHHhhhcCCceeEeecCCC-CCHHHHHHHH
Q psy969 2 GRPRKVAFKGSNFRTLHGRGP-DS----TSYGNVCNTCGIIMCSA----IKHFHKLSGKKIGLKPAGGI-STFEDSVRWI 71 (106)
Q Consensus 2 ~~~~iai~aGadFKTSTG~~~-~g----at~~~~~~~~v~lm~~~----i~~~~~~~~~~vgiKaaGGI-rt~~~a~~~i 71 (106)
|++-+|++.|-.+-||.||.| .| +-+|+.-|..+-.|++. +++..+...++=|++.--|+ .++.+..+.+
T Consensus 209 G~Si~Ai~~GksvDtsmG~tpLeGl~mgtRsG~ldp~~~~~l~~~~~~s~~e~~~~Ln~~SGLlg~sG~s~D~R~l~~~~ 288 (400)
T PRK07157 209 GASLCAIKNSKSIDTSMGLTPLAGVMMGTRSGDIDPSIHEFVAKEANMSISEFTDLLNKKSGLLGVSGISSDLRDVIKAA 288 (400)
T ss_pred CceeeeeeCCeEEEeCCCCCCccCCCCCCCCCCCChHHHHHHHHhcCCCHHHHHHHHhhccCceEecCCCCcHHHHHHHH
Confidence 677788888888899999988 33 44466666666555442 34444556677888875554 5665554443
No 405
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=21.53 E-value=4.7e+02 Score=21.65 Aligned_cols=70 Identities=7% Similarity=-0.119 Sum_probs=38.0
Q ss_pred hhhHHHh--hCCCc-ccCC-C---CCCCCCCCCCCC---chHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHH
Q psy969 3 RPRKVAF--KGSNF-RTLH-G---RGPDSTSYGNVC---NTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIY 72 (106)
Q Consensus 3 ~~~iai~--aGadF-KTST-G---~~~~gat~~~~~---~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~ 72 (106)
+++++.+ .|||+ |+.- | |+.+-.. +.++ .++.+.+.+..+. . +.--|=.|||+ +.++.+++++
T Consensus 189 a~r~~~~~elGaDvlKve~p~~~~~veg~~~-~~~~~~~~~~~~~f~~~~~a----~-~~P~vvlsgG~-~~~~f~~~l~ 261 (340)
T PRK12858 189 TMEEFSKPRYGVDVLKVEVPVDMKFVEGFDG-FEEAYTQEEAFKLFREQSDA----T-DLPFIFLSAGV-SPELFRRTLE 261 (340)
T ss_pred HHHHHhhhccCCeEEEeeCCCCccccccccc-ccccccHHHHHHHHHHHHhh----C-CCCEEEECCCC-CHHHHHHHHH
Confidence 5677774 99999 9842 1 1111000 0000 1223445444331 2 33445578888 7788888888
Q ss_pred HHHhhCCC
Q psy969 73 LVLIMLGP 80 (106)
Q Consensus 73 l~~~~lGa 80 (106)
.+.+ .|+
T Consensus 262 ~A~~-aGa 268 (340)
T PRK12858 262 FACE-AGA 268 (340)
T ss_pred HHHH-cCC
Confidence 7666 676
No 406
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=21.22 E-value=1.7e+02 Score=23.28 Aligned_cols=35 Identities=23% Similarity=0.259 Sum_probs=23.7
Q ss_pred hhHHHhhCCCc-c-cCCCCCCCCCCCCCCCchHHHHHHHH
Q psy969 4 PRKVAFKGSNF-R-TLHGRGPDSTSYGNVCNTCGIIMCSA 41 (106)
Q Consensus 4 ~~iai~aGadF-K-TSTG~~~~gat~~~~~~~~v~lm~~~ 41 (106)
+..|+++|+++ - |-.|.+ +. .||++.|++-.+++.
T Consensus 221 ~laA~~aG~~~vd~sv~GlG--e~-aGN~~tE~lv~~l~~ 257 (279)
T cd07947 221 AVAAWLYGASWVNCTLLGIG--ER-TGNCPLEAMVIEYAQ 257 (279)
T ss_pred HHHHHHhCCCEEEEeccccc--cc-ccchhHHHHHHHHHH
Confidence 34689999999 4 445554 23 377778887776643
No 407
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=21.05 E-value=4.2e+02 Score=20.85 Aligned_cols=42 Identities=19% Similarity=0.196 Sum_probs=29.3
Q ss_pred HHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCC
Q psy969 38 MCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLG 79 (106)
Q Consensus 38 m~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lG 79 (106)
+.+.+++..+.--..+.|+=.-|+-++++..+++..+++.++
T Consensus 151 ~~~~~~~~~~~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~~~ 192 (274)
T cd07938 151 VAEVAERLLDLGCDEISLGDTIGVATPAQVRRLLEAVLERFP 192 (274)
T ss_pred HHHHHHHHHHcCCCEEEECCCCCccCHHHHHHHHHHHHHHCC
Confidence 333333333333457999999999999999999988776654
No 408
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=21.00 E-value=4.2e+02 Score=20.88 Aligned_cols=75 Identities=15% Similarity=0.065 Sum_probs=43.6
Q ss_pred HHHhhCCCc---ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCCc
Q psy969 6 KVAFKGSNF---RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDW 82 (106)
Q Consensus 6 iai~aGadF---KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~w 82 (106)
-.++.|+|- =-|||=.+.=+. .|..+++..+++. ..+++-|=+-=|-.+.++++++.+.+++ +|++.
T Consensus 29 ~~~~~Gv~gi~v~GstGE~~~Ls~-----~Er~~l~~~~~~~----~~g~~pvi~gv~~~~t~~ai~~a~~A~~-~Gad~ 98 (294)
T TIGR02313 29 FQIEGGSHAISVGGTSGEPGSLTL-----EERKQAIENAIDQ----IAGRIPFAPGTGALNHDETLELTKFAEE-AGADA 98 (294)
T ss_pred HHHHcCCCEEEECccCcccccCCH-----HHHHHHHHHHHHH----hCCCCcEEEECCcchHHHHHHHHHHHHH-cCCCE
Confidence 345667663 334452222122 2345555544433 4566655443355788999999998766 79988
Q ss_pred c---CCCceeE
Q psy969 83 L---NKDLFRI 90 (106)
Q Consensus 83 ~---~~~~~Ri 90 (106)
+ .|..++.
T Consensus 99 v~v~pP~y~~~ 109 (294)
T TIGR02313 99 AMVIVPYYNKP 109 (294)
T ss_pred EEEcCccCCCC
Confidence 4 6777665
No 409
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=20.86 E-value=1e+02 Score=25.23 Aligned_cols=41 Identities=32% Similarity=0.482 Sum_probs=29.2
Q ss_pred CCCCHHHHHHHHHHHHhhCCCCccCCCceeEecc-chHHHHHHH
Q psy969 60 GISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGAS-SLLNNILQE 102 (106)
Q Consensus 60 GIrt~~~a~~~i~l~~~~lGa~w~~~~~~RiGtS-s~~~~l~~~ 102 (106)
|=||.++|+..-.++++.++-+|+.= ..||-+ .++.+..+.
T Consensus 78 Gc~taeEAv~tArlARE~~~t~wiKl--EVi~d~~tLlPD~~et 119 (262)
T COG2022 78 GCRTAEEAVRTARLAREALGTNWIKL--EVIGDEKTLLPDPIET 119 (262)
T ss_pred ccCCHHHHHHHHHHHHHHccCCeEEE--EEecCCcccCCChHHH
Confidence 67999999999999999999999732 234443 344444433
No 410
>PRK09432 metF 5,10-methylenetetrahydrofolate reductase; Provisional
Probab=20.84 E-value=2.7e+02 Score=22.33 Aligned_cols=52 Identities=12% Similarity=-0.090 Sum_probs=30.2
Q ss_pred HhhCCCc-ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHH
Q psy969 8 AFKGSNF-RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIY 72 (106)
Q Consensus 8 i~aGadF-KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~ 72 (106)
+++|||| -|=--|- ++...-+.+.+++..-..+=-.||- +|.++.++..|-+
T Consensus 173 ~~aGA~~~iTQ~~Fd----------~~~~~~f~~~~~~~Gi~vPIi~GI~---pi~s~~~~~~~~~ 225 (296)
T PRK09432 173 VDAGANRAITQFFFD----------VESYLRFRDRCVSAGIDVEIVPGIL---PVSNFKQLKKFAD 225 (296)
T ss_pred HHcCCCeeecccccc----------hHHHHHHHHHHHHcCCCCCEEeecc---ccCCHHHHHHHHH
Confidence 4689999 8877664 4455555555543200011133443 4888888888854
No 411
>PRK11072 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase; Reviewed
Probab=20.56 E-value=2e+02 Score=27.10 Aligned_cols=43 Identities=26% Similarity=0.170 Sum_probs=30.3
Q ss_pred chHHHHHHHHHHHHhhhcCCceeEee-cCCCCCHHHHHHHHHHH
Q psy969 32 NTCGIIMCSAIKHFHKLSGKKIGLKP-AGGISTFEDSVRWIYLV 74 (106)
Q Consensus 32 ~~~v~lm~~~i~~~~~~~~~~vgiKa-aGGIrt~~~a~~~i~l~ 74 (106)
.++++.|++.|.+..+..+..--||- .||||+.|...++.++.
T Consensus 293 ~~~i~~mk~ri~~~~~~~~~~~niKlG~GGiRDIEf~~Q~~QL~ 336 (943)
T PRK11072 293 IQALRNMKGMIRREVRRRGLADNIKLGAGGIREIEFIVQVFQLI 336 (943)
T ss_pred HHHHHHHHHHHHHHhhccCCCcCcccCCCchhhHHHHHHHHHHH
Confidence 55888899888765333222223554 39999999999999875
No 412
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=20.46 E-value=4.5e+02 Score=20.94 Aligned_cols=42 Identities=10% Similarity=0.080 Sum_probs=28.7
Q ss_pred cCCceeEeecCCCCCHHHHHHHHHHHHhhCCCCcc---CCCceeEe
Q psy969 49 SGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWL---NKDLFRIG 91 (106)
Q Consensus 49 ~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~w~---~~~~~RiG 91 (106)
.++++-|=+-=|=.+.++++++.+.+++. |++++ .|..++..
T Consensus 74 ~~grvpvi~Gv~~~~t~~ai~~a~~A~~~-Gad~vlv~~P~y~~~~ 118 (309)
T cd00952 74 VAGRVPVFVGATTLNTRDTIARTRALLDL-GADGTMLGRPMWLPLD 118 (309)
T ss_pred hCCCCCEEEEeccCCHHHHHHHHHHHHHh-CCCEEEECCCcCCCCC
Confidence 46666555422335789999999887765 99984 67677653
No 413
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=20.35 E-value=1.1e+02 Score=25.72 Aligned_cols=25 Identities=32% Similarity=0.252 Sum_probs=22.9
Q ss_pred CCCCCHHHHHHHHHHHHhhCCCCcc
Q psy969 59 GGISTFEDSVRWIYLVLIMLGPDWL 83 (106)
Q Consensus 59 GGIrt~~~a~~~i~l~~~~lGa~w~ 83 (106)
-|=+|.++|+..-++++++.|-+|+
T Consensus 144 ag~~ta~eAv~~a~lare~~~~~~i 168 (326)
T PRK11840 144 AGCYTAEEAVRTLRLAREAGGWDLV 168 (326)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCeE
Confidence 3689999999999999999999996
No 414
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=20.25 E-value=3.5e+02 Score=20.58 Aligned_cols=36 Identities=19% Similarity=0.116 Sum_probs=25.9
Q ss_pred eeEeecCCCCCHHHHHHHHHHHHhhCCCCccCCCceeEec
Q psy969 53 IGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGA 92 (106)
Q Consensus 53 vgiKaaGGIrt~~~a~~~i~l~~~~lGa~w~~~~~~RiGt 92 (106)
+-|=+-+.+.+.+++.++++. -..+.++++..++|.
T Consensus 181 ipia~dE~~~~~~~~~~~i~~----~~~d~v~~k~~~~GG 216 (265)
T cd03315 181 TPIMADESAFTPHDAFRELAL----GAADAVNIKTAKTGG 216 (265)
T ss_pred CCEEECCCCCCHHHHHHHHHh----CCCCEEEEecccccC
Confidence 445455678888888888874 346777888888875
Done!