RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy969
(106 letters)
>gnl|CDD|235387 PRK05283, PRK05283, deoxyribose-phosphate aldolase; Provisional.
Length = 257
Score = 68.8 bits (169), Expect = 2e-15
Identities = 28/68 (41%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 37 IMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGASSLL 96
IM I+ K +G KPAGG+ T ED+ +++ L +LG DW + FR GASSLL
Sbjct: 182 IMLEVIRD--MGVAKTVGFKPAGGVRTAEDAAQYLALADEILGADWADARHFRFGASSLL 239
Query: 97 NNILQELE 104
++L+ L
Sbjct: 240 ASLLKTLG 247
>gnl|CDD|223351 COG0274, DeoC, Deoxyribose-phosphate aldolase [Nucleotide transport
and metabolism].
Length = 228
Score = 48.4 bits (116), Expect = 5e-08
Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 13/66 (19%)
Query: 41 AIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGASSLLNNIL 100
+K + G ++G+K +GGI T ED+ I G RIG SS + IL
Sbjct: 172 DVKLMKETVGGRVGVKASGGIRTAEDAKAM-----IEAG-------ATRIGTSSGV-AIL 218
Query: 101 QELEAL 106
+ LE L
Sbjct: 219 EGLEHL 224
>gnl|CDD|188646 cd00959, DeoC, 2-deoxyribose-5-phosphate aldolase (DERA) of the
DeoC family. 2-deoxyribose-5-phosphate aldolase (DERA)
of the DeoC family. DERA belongs to the class I
aldolases and catalyzes a reversible aldol reaction
between acetaldehyde and glyceraldehyde 3-phosphate to
generate 2-deoxyribose 5-phosphate. DERA is unique in
catalyzing the aldol reaction between two aldehydes, and
its broad substrate specificity confers considerable
utility as a biocatalyst, offering an environmentally
benign alternative to chiral transition metal catalysis
of the asymmetric aldol reaction.
Length = 203
Score = 44.1 bits (105), Expect = 2e-06
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 12/53 (22%)
Query: 41 AIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGAS 93
+K + G ++G+K AGGI T ED++ I G RIG S
Sbjct: 163 DVKLMKEAVGGRVGVKAAGGIRTLEDALAM-----IEAG-------ATRIGTS 203
>gnl|CDD|234784 PRK00507, PRK00507, deoxyribose-phosphate aldolase; Provisional.
Length = 221
Score = 39.4 bits (93), Expect = 8e-05
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 13/65 (20%)
Query: 41 AIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGASSLLNNIL 100
+K + G ++G+K +GGI T ED++ +I G R+G S+ + IL
Sbjct: 168 DVKLMRETVGPRVGVKASGGIRTLEDALA-----MIEAGAT-------RLGTSAGV-AIL 214
Query: 101 QELEA 105
+ LE
Sbjct: 215 KGLEK 219
>gnl|CDD|188634 cd00945, Aldolase_Class_I, Class I aldolases. Class I aldolases.
The class I aldolases use an active-site lysine which
stabilizes a reaction intermediates via Schiff base
formation, and have TIM beta/alpha barrel fold. The
members of this family include
2-keto-3-deoxy-6-phosphogluconate (KDPG) and
2-keto-4-hydroxyglutarate (KHG) aldolases,
transaldolase, dihydrodipicolinate synthase sub-family,
Type I 3-dehydroquinate dehydratase, DeoC and DhnA
proteins, and metal-independent
fructose-1,6-bisphosphate aldolase. Although
structurally similar, the class II aldolases use a
different mechanism and are believed to have an
independent evolutionary origin.
Length = 201
Score = 35.8 bits (83), Expect = 0.001
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 41 AIKHFHKLSGKKIGLKPAGGISTFEDSVRWI 71
+K + G ++G+K AGGI T ED++ I
Sbjct: 161 DVKLMKEAVGGRVGVKAAGGIKTLEDALAAI 191
>gnl|CDD|232838 TIGR00126, deoC, deoxyribose-phosphate aldolase.
Deoxyribose-phosphate aldolase is involved in the
catabolism of nucleotides and deoxyriibonucleotides. The
catalytic process is as follows: 2-deoxy-D-ribose
5-phosphate = D-glyceraldehyde 3-phosphate +
acetaldehyde. It is found in both gram-postive and
gram-negative bacteria [Purines, pyrimidines,
nucleosides, and nucleotides, Other, Energy metabolism,
Other].
Length = 211
Score = 31.7 bits (72), Expect = 0.044
Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 12/48 (25%)
Query: 46 HKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGAS 93
G IG+K +GG+ T ED+ + +I G RIGAS
Sbjct: 169 RNTVGDTIGVKASGGVRTAEDA-----IAMIEAGAS-------RIGAS 204
>gnl|CDD|233228 TIGR00998, 8a0101, efflux pump membrane protein (multidrug
resistance protein A). [Transport and binding proteins,
Other].
Length = 334
Score = 28.2 bits (63), Expect = 0.80
Identities = 18/66 (27%), Positives = 25/66 (37%), Gaps = 15/66 (22%)
Query: 43 KHFHKLSGKKIGLKPAGGISTF------EDSVRWIYL-----VLIMLGPDWLNKDLFRIG 91
F GK G+ G S F + WI + V I L P L++ RIG
Sbjct: 272 VVFE---GKVTGISMGTG-SAFSLLPAQNATGNWIKVVQRLPVRIKLDPKELDEHPLRIG 327
Query: 92 ASSLLN 97
S+ +
Sbjct: 328 LSAEVE 333
>gnl|CDD|238154 cd00250, CAS_like, Clavaminic acid synthetase (CAS) -like; CAS is
a trifunctional Fe(II)/ 2-oxoglutarate (2OG) oxygenase
carrying out three reactions in the biosynthesis of
clavulanic acid, an inhibitor of class A serine
beta-lactamases. In general, Fe(II)-2OG oxygenases
catalyze a hydroxylation reaction, which leads to the
incorporation of an oxygen atom from dioxygen into a
hydroxyl group and conversion of 2OG to succinate and
CO2.
Length = 262
Score = 27.0 bits (60), Expect = 2.0
Identities = 9/17 (52%), Positives = 9/17 (52%)
Query: 13 NFRTLHGRGPDSTSYGN 29
N R LHGR S YG
Sbjct: 234 NRRVLHGRTAFSPRYGG 250
>gnl|CDD|224603 COG1689, COG1689, Uncharacterized protein conserved in archaea
[Function unknown].
Length = 274
Score = 26.0 bits (57), Expect = 4.2
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 59 GGISTFEDSVRWIYLVLIMLG 79
GISTFE++ R + + +
Sbjct: 253 LGISTFENTYRALASLASLHR 273
>gnl|CDD|226393 COG3876, COG3876, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 409
Score = 25.9 bits (57), Expect = 4.8
Identities = 8/28 (28%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
Query: 43 KHFHKLSGKKIGL--KPAGGISTFEDSV 68
++ + GK++GL AG S + S+
Sbjct: 36 EYTRCIKGKRVGLITNSAGINSEGKSSL 63
>gnl|CDD|240856 cd12410, RRM2_RRT5, RNA recognition motif 2 in yeast regulator of
rDNA transcription protein 5 (RRT5) and similar
proteins. This subfamily corresponds to the RRM2 of
the lineage specific family containing a group of
uncharacterized yeast regulators of rDNA transcription
protein 5 (RRT5), which may play roles in the
modulation of rDNA transcription. RRT5 contains two RNA
recognition motifs (RRMs), also termed RBDs (RNA
binding domains) or RNPs (ribonucleoprotein domains). .
Length = 93
Score = 24.5 bits (54), Expect = 9.3
Identities = 10/12 (83%), Positives = 11/12 (91%)
Query: 47 KLSGKKIGLKPA 58
KL+GKKI LKPA
Sbjct: 74 KLNGKKISLKPA 85
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.141 0.443
Gapped
Lambda K H
0.267 0.0755 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,388,039
Number of extensions: 443727
Number of successful extensions: 370
Number of sequences better than 10.0: 1
Number of HSP's gapped: 369
Number of HSP's successfully gapped: 18
Length of query: 106
Length of database: 10,937,602
Length adjustment: 71
Effective length of query: 35
Effective length of database: 7,788,468
Effective search space: 272596380
Effective search space used: 272596380
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.1 bits)