RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy969
(106 letters)
>2a4a_A Deoxyribose-phosphate aldolase; lyase, TIM beta/alpha barrel, DEOC,
DERA, structur genomics, structural genomics consortium,
SGC; 1.84A {Plasmodium yoelii yoelii} SCOP: c.1.10.1
Length = 281
Score = 89.0 bits (221), Expect = 5e-23
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
Query: 37 IMCSAIKHF---HKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGAS 93
+ AIK + + KIGLK +GGIS + +I L L + D FRIG+S
Sbjct: 207 YIIKAIKEYIKNNPEKNNKIGLKVSGGISDLNTASHYILLARRFLSSLACHPDNFRIGSS 266
Query: 94 SLLNNILQELE 104
SL+ + + +
Sbjct: 267 SLVIKLRKVIS 277
>1p1x_A Deoxyribose-phosphate aldolase; alpha-beta barrel, TIM barrel,
lyase; 0.99A {Escherichia coli} SCOP: c.1.10.1 PDB:
1jcl_A 1jcj_A* 1ktn_A 3npv_B 3npu_A 3npw_A 3nq2_A 3npx_A
3nq8_A 3q2d_A* 3nr0_A 3nqv_A
Length = 260
Score = 87.0 bits (216), Expect = 2e-22
Identities = 25/68 (36%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Query: 37 IMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGASSLL 96
IM I+ K +G KPAGG+ T ED+ +++ + + G DW + +R GASSLL
Sbjct: 185 IMMEVIRDMG--VEKTVGFKPAGGVRTAEDAQKYLAIADELFGADWADARHYRFGASSLL 242
Query: 97 NNILQELE 104
++L+ L
Sbjct: 243 ASLLKALG 250
>4eiv_A Deoxyribose-phosphate aldolase; chemotherapy, brain cysts,
bradyzoite, structural genomics, for structural genomics
of infectious diseases; 1.37A {Toxoplasma gondii} PDB:
3qyq_A*
Length = 297
Score = 77.5 bits (191), Expect = 1e-18
Identities = 13/82 (15%), Positives = 32/82 (39%), Gaps = 15/82 (18%)
Query: 37 IMCSAIKHFHKLSGKKI---------------GLKPAGGISTFEDSVRWIYLVLIMLGPD 81
++ A++ + ++I G+K G ++ ++ ++ GP
Sbjct: 201 LISIALREYMVRENERIRVEGINREGAAVRCIGIKIEVGDVHMAETADFLMQMIFENGPR 260
Query: 82 WLNKDLFRIGASSLLNNILQEL 103
+ +D FR+G L L++
Sbjct: 261 SIVRDKFRVGGGFNLLKELRDC 282
>1vcv_A Probable deoxyribose-phosphate aldolase; DERA, hyperthermophIle,
archaea, lyase; 2.00A {Pyrobaculum aerophilum} SCOP:
c.1.10.1
Length = 226
Score = 56.5 bits (137), Expect = 3e-11
Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 5/60 (8%)
Query: 38 MCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGASSLLN 97
+AI + K G ++G+K AGGI T E + ++ + R+G S+
Sbjct: 170 RAAAIARYIKEKGYRLGVKMAGGIRTREQAKA-----IVDAIGWGEDPARVRLGTSTPEA 224
>3ndo_A Deoxyribose-phosphate aldolase; ssgcid, NIH, niaid, SBRI, UW,
emerald biostructures, ALS collaborative
crystallography; HET: GOL; 1.25A {Mycobacterium
smegmatis} PDB: 3ng3_A
Length = 231
Score = 55.7 bits (135), Expect = 6e-11
Identities = 13/53 (24%), Positives = 25/53 (47%)
Query: 41 AIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGAS 93
A++ + G+++G+K +GGI T E + + LG L G++
Sbjct: 179 AVEIMARTVGERLGVKASGGIRTAEQAAAMLDAGATRLGLSGSRAVLDGFGSA 231
>1mzh_A Deoxyribose-phosphate aldolase; alpha-beta barrel, structural
genomics, PSI, protein structure initiative; 2.00A
{Aquifex aeolicus} SCOP: c.1.10.1
Length = 225
Score = 49.9 bits (120), Expect = 9e-09
Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 13/65 (20%)
Query: 41 AIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGASSLLNNIL 100
++ + +I +K +GGI E ++ +I G D RIG SS + +I
Sbjct: 164 EVRLIKSSAKGRIKVKASGGIRDLETAIS-----MIEAGAD-------RIGTSSGI-SIA 210
Query: 101 QELEA 105
+E
Sbjct: 211 EEFLK 215
>3oa3_A Aldolase; structural genomics, seattle structural genomics center
for infectious disease, ssgcid, pathogenic fungus; 1.60A
{Coccidioides immitis}
Length = 288
Score = 48.9 bits (117), Expect = 3e-08
Identities = 16/69 (23%), Positives = 29/69 (42%), Gaps = 17/69 (24%)
Query: 37 IMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGASSLL 96
+M + + +K +GGI T ED V+ ++ G + R+GAS+ +
Sbjct: 223 LMSAVCDSL----QSETRVKASGGIRTIEDCVK-----MVRAGAE-------RLGASAGV 266
Query: 97 NNILQELEA 105
I+ E
Sbjct: 267 -KIVNETRL 274
>3ngj_A Deoxyribose-phosphate aldolase; lyase, structural genomics,
structural genomics center for infectious disease,
ssgcid; 1.70A {Entamoeba histolytica}
Length = 239
Score = 48.0 bits (115), Expect = 4e-08
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 13/64 (20%)
Query: 41 AIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGASSLLNNIL 100
+K G K +K AGGI TF+D+++ +I G RIGAS+ + IL
Sbjct: 189 DVKLMKDTVGDKALVKAAGGIRTFDDAMK-----MINNGAS-------RIGASAGI-AIL 235
Query: 101 QELE 104
+
Sbjct: 236 NGIH 239
>3r12_A Deoxyribose-phosphate aldolase; TIM beta/alpha-barrel, structural
genomics, joint center for structural genomics, JCSG;
HET: MSE CIT; 1.75A {Thermotoga maritima} PDB: 1o0y_A*
3r13_A*
Length = 260
Score = 47.7 bits (114), Expect = 7e-08
Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 13/65 (20%)
Query: 41 AIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGASSLLNNIL 100
+ + G ++G+K +GGI TFED+V+ +IM G D RIG SS + I+
Sbjct: 205 DVHLMKWIVGDEMGVKASGGIRTFEDAVK-----MIMYGAD-------RIGTSSGV-KIV 251
Query: 101 QELEA 105
Q E
Sbjct: 252 QGGEE 256
>1n7k_A Deoxyribose-phosphate aldolase; A.pernix, tetramer, alpha-beta TIM
barrel, riken S genomics/proteomics initiative, RSGI,
structural genomics,; 2.00A {Aeropyrum pernix} SCOP:
c.1.10.1
Length = 234
Score = 46.4 bits (111), Expect = 2e-07
Identities = 17/71 (23%), Positives = 29/71 (40%), Gaps = 19/71 (26%)
Query: 36 IIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGASSL 95
+ S K +G+K +GGI + D+V + G D IG SS
Sbjct: 182 FRLASLAK------PLGMGVKASGGIRSGIDAVL-----AVGAGAD-------IIGTSSA 223
Query: 96 LNNILQELEAL 106
+ +L+ ++L
Sbjct: 224 V-KVLESFKSL 233
>1ub3_A Aldolase protein; schiff base, deoxyribose phosphate,
carbinolamine, structural genomics, riken structural
genomics/proteomics initiative; HET: HPD; 1.40A {Thermus
thermophilus} SCOP: c.1.10.1 PDB: 1j2w_A*
Length = 220
Score = 44.1 bits (105), Expect = 9e-07
Identities = 12/65 (18%), Positives = 26/65 (40%), Gaps = 13/65 (20%)
Query: 41 AIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGASSLLNNIL 100
+ +++ + +K AGGI E ++R ++ G R+G SS + ++
Sbjct: 165 DVALLVRVAQGRAQVKAAGGIRDRETALR-----MLKAGAS-------RLGTSSGV-ALV 211
Query: 101 QELEA 105
Sbjct: 212 AGEGG 216
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.0 bits (67), Expect = 0.14
Identities = 20/90 (22%), Positives = 27/90 (30%), Gaps = 26/90 (28%)
Query: 27 YGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGIST------FEDSVRWIYLVLIMLGP 80
Y G + +G GL A I+ F SVR V
Sbjct: 249 YVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITV------ 302
Query: 81 DWLNKDLFRIGA--------SSLLNNILQE 102
LF IG +SL +IL++
Sbjct: 303 ------LFFIGVRCYEAYPNTSLPPSILED 326
Score = 24.6 bits (53), Expect = 8.2
Identities = 20/98 (20%), Positives = 28/98 (28%), Gaps = 39/98 (39%)
Query: 3 RPRKVAFKGSNFRT--LHGRGP----DSTSYGNVCNT--CGIIMCSAIKHFHKLSGKKIG 54
+ K+ FK N + R +T T +M A F L K G
Sbjct: 1702 KTEKI-FKEINEHSTSYTFRSEKGLLSATQ-----FTQPALTLMEKAA--FEDL--KSKG 1751
Query: 55 LKP-----AG-------------GISTFEDSVRWIYLV 74
L P AG + + E V +V
Sbjct: 1752 LIPADATFAGHSLGEYAALASLADVMSIESLVE---VV 1786
>2fli_A Ribulose-phosphate 3-epimerase; (beta/alpha)8-barrel, D- xylitol
5-phosphate, isomerase; HET: DX5; 1.80A {Streptococcus
pyogenes} SCOP: c.1.2.2
Length = 220
Score = 27.1 bits (61), Expect = 1.1
Identities = 12/45 (26%), Positives = 19/45 (42%), Gaps = 8/45 (17%)
Query: 41 AIKHFH------KLSGKKIG--LKPAGGISTFEDSVRWIYLVLIM 77
+ +H H K +G K G + P + E + + VLIM
Sbjct: 94 STRHIHGALQKIKAAGMKAGVVINPGTPATALEPLLDLVDQVLIM 138
>1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase,
isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2
Length = 230
Score = 26.7 bits (60), Expect = 1.2
Identities = 14/46 (30%), Positives = 20/46 (43%), Gaps = 8/46 (17%)
Query: 40 SAIKHFH------KLSGKKIG--LKPAGGISTFEDSVRWIYLVLIM 77
+A H H + GKK G L P+ + E + L+LIM
Sbjct: 96 NASPHLHRTLCQIRELGKKAGAVLNPSTPLDFLEYVLPVCDLILIM 141
>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc
genomics, center for structural genomics of infectious
DISE csgid; 2.05A {Francisella tularensis subsp}
Length = 246
Score = 26.7 bits (60), Expect = 1.5
Identities = 15/45 (33%), Positives = 18/45 (40%), Gaps = 8/45 (17%)
Query: 41 AIKHFH------KLSGKKIG--LKPAGGISTFEDSVRWIYLVLIM 77
A +H K G + G L PA GI + I VLIM
Sbjct: 119 ASEHIDRSLQLIKSFGIQAGLALNPATGIDCLKYVESNIDRVLIM 163
>3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE;
1.70A {Homo sapiens} PDB: 3ovq_A* 3ovr_A* 3qc3_A
Length = 228
Score = 26.3 bits (59), Expect = 1.6
Identities = 10/45 (22%), Positives = 18/45 (40%), Gaps = 8/45 (17%)
Query: 41 AIKHFHKL------SGKKIG--LKPAGGISTFEDSVRWIYLVLIM 77
A ++ L +G K+G +KP + I + L+M
Sbjct: 97 ATENPGALIKDIRENGMKVGLAIKPGTSVEYLAPWANQIDMALVM 141
>1h0z_A Serine protease inhibitor kazal-type 5, contains hemofiltrate
peptide HF6478, hemofiltrate...; serine proteinase
inhibitor; NMR {Homo sapiens} SCOP: g.68.1.2
Length = 68
Score = 25.6 bits (55), Expect = 1.7
Identities = 9/33 (27%), Positives = 16/33 (48%)
Query: 20 RGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKK 52
+GPD +GN C+ C + + + K G+
Sbjct: 34 QGPDGKVHGNTCSMCEVFFQAEEEEKKKKEGES 66
>1rpx_A Protein (ribulose-phosphate 3-epimerase); chloroplast, calvin
cycle, oxidative pentose PH pathway; 2.30A {Solanum
tuberosum} SCOP: c.1.2.2
Length = 230
Score = 26.0 bits (58), Expect = 2.1
Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 8/46 (17%)
Query: 40 SAIKHFH------KLSGKKIG--LKPAGGISTFEDSVRWIYLVLIM 77
S+ H H K G K G L P ++ E + + LVLIM
Sbjct: 102 SSTIHLHRTINQIKSLGAKAGVVLNPGTPLTAIEYVLDAVDLVLIM 147
>1v85_A Similar to ring finger protein 36; apoptosis, neuron, cell death,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
Length = 91
Score = 24.9 bits (54), Expect = 3.1
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 74 VLIMLGPDWLNKDLFRIGASSLLNNILQELEAL 106
+L+ L + ++ + I SS IL ELE +
Sbjct: 52 LLLTLTEEEFSRAPYTIENSSHRRVILTELERV 84
>1tv5_A Dhodehase, dihydroorotate dehydrogenase homolog, mitochondri,
dihydroorotate; alpha-beta barrel, TIM barrel,
oxidoreductase; HET: A26 FMN ORO N8E; 2.40A {Plasmodium
falciparum} SCOP: c.1.4.1
Length = 443
Score = 25.8 bits (57), Expect = 3.5
Identities = 7/26 (26%), Positives = 13/26 (50%)
Query: 41 AIKHFHKLSGKKIGLKPAGGISTFED 66
I + + K+I + +GGI + D
Sbjct: 362 FICEMYNYTNKQIPIIASGGIFSGLD 387
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 25.4 bits (55), Expect = 3.9
Identities = 4/9 (44%), Positives = 7/9 (77%)
Query: 30 VCNTCGIIM 38
VC CG+++
Sbjct: 44 VCALCGLVL 52
>3lqk_A Dipicolinate synthase subunit B; flavoprotein, PSI2, MCSG,
structural protein structure initiative, midwest center
for structural genomics; 2.10A {Bacillus halodurans}
Length = 201
Score = 25.5 bits (56), Expect = 4.0
Identities = 5/25 (20%), Positives = 11/25 (44%)
Query: 47 KLSGKKIGLKPAGGISTFEDSVRWI 71
+GK +G G T+ + + +
Sbjct: 4 NFAGKHVGFGLTGSHCTYHEVLPQM 28
>3vhl_A Dedicator of cytokinesis protein 8; signal transduction, guanine
nucleotide exchang factor, GTPA signaling protein;
2.08A {Mus musculus}
Length = 288
Score = 25.4 bits (55), Expect = 4.0
Identities = 8/32 (25%), Positives = 12/32 (37%), Gaps = 5/32 (15%)
Query: 6 KVAFKGSNFRTLHG-----RGPDSTSYGNVCN 32
+V F GS F L + P T + +
Sbjct: 18 RVGFYGSRFGDLDEQEFVYKEPAITKLPEISH 49
>3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate,
(beta/alpha)8 barrel, carbohydrate metabolism,
isomerase; HET: S6P; 2.20A {Escherichia coli} PDB:
3ct7_A*
Length = 231
Score = 25.2 bits (56), Expect = 5.0
Identities = 5/42 (11%), Positives = 12/42 (28%), Gaps = 8/42 (19%)
Query: 44 HFH------KLSGKKIG--LKPAGGISTFEDSVRWIYLVLIM 77
+ K+G L P + + + + +M
Sbjct: 94 QAFRLIDEIRRHDMKVGLILNPETPVEAMKYYIHKADKITVM 135
>1us5_A Putative GLUR0 ligand binding core; receptor, membrane protein,
glutamate receptor, L-glutamate; HET: GLU; 1.5A {Thermus
thermophilus} SCOP: c.94.1.1 PDB: 1us4_A*
Length = 314
Score = 25.0 bits (55), Expect = 5.1
Identities = 9/32 (28%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
Query: 40 SAIKHFHKLSGKKIGLKPAGGISTFEDSVRWI 71
+ I+ L GK++ + G S E + R I
Sbjct: 121 AGIRTVADLKGKRVVVGDVG--SGTEQNARQI 150
>3mcu_A Dipicolinate synthase, B chain; NESG, structural genomics, PSI-2,
protein structure initiative, northeast structural
genomics consortium; 2.30A {Bacillus cereus}
Length = 207
Score = 25.1 bits (55), Expect = 5.2
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 47 KLSGKKIGLKPAGGISTFE 65
L GK+IG G T+E
Sbjct: 2 SLKGKRIGFGFTGSHCTYE 20
>3cu2_A Ribulose-5-phosphate 3-epimerase; YP_718263.1, ribulose-PHOS
epimerase family, structural genomics, joint center for
STR genomics, JCSG; 1.91A {Haemophilus somnus}
Length = 237
Score = 24.9 bits (55), Expect = 5.3
Identities = 13/69 (18%), Positives = 26/69 (37%), Gaps = 7/69 (10%)
Query: 11 GSNFRTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIG--LKPAGGISTFEDSV 68
G+N TL + + T + + +++ IG L P IS E +
Sbjct: 92 GANLVTLQ---LEQYH--DFALTIEWLAKQKTTYANQVYPVLIGACLCPETPISELEPYL 146
Query: 69 RWIYLVLIM 77
I ++ ++
Sbjct: 147 DQIDVIQLL 155
>4ddd_A Immunogenic protein; ssgcid, structural genomics, seattle
structural genomics CEN infectious disease, immune
system; 1.90A {Ehrlichia chaffeensis}
Length = 327
Score = 25.1 bits (55), Expect = 6.0
Identities = 5/32 (15%), Positives = 13/32 (40%), Gaps = 2/32 (6%)
Query: 40 SAIKHFHKLSGKKIGLKPAGGISTFEDSVRWI 71
S I + GK++ + G + ++ +
Sbjct: 136 SNISVIDDIKGKRVNIGSPG--TGVRVAMLKL 165
>1jlx_A Agglutinin, amaranthin, ACA; complex (lectin/saccharide),
T-disaccharide homodimer, bivalent, lectin; HET: GAL
A2G; 2.20A {Amaranthus caudatus} SCOP: b.42.3.1 b.42.3.1
PDB: 1jly_A
Length = 303
Score = 24.9 bits (53), Expect = 7.6
Identities = 6/24 (25%), Positives = 9/24 (37%)
Query: 4 PRKVAFKGSNFRTLHGRGPDSTSY 27
V FKG+N + L +
Sbjct: 162 KGYVTFKGNNGKYLGVITINQLPC 185
>3zwt_A Dihydroorotate dehydrogenase (quinone), mitochond; oxidoreductase;
HET: FMN ORO KFZ; 1.55A {Homo sapiens} PDB: 1d3h_A*
2bxv_A* 2prh_A* 2prl_A* 2prm_A* 3f1q_A* 3fj6_A* 3fjl_A*
3g0u_A* 3g0x_A* 3zws_A* 1d3g_A* 3u2o_A* 2fpv_A* 2fpt_A*
2fpy_A* 2fqi_A* 3kvl_A* 3kvk_A* 3kvj_A* ...
Length = 367
Score = 24.4 bits (54), Expect = 8.6
Identities = 17/74 (22%), Positives = 31/74 (41%), Gaps = 22/74 (29%)
Query: 42 IKHFHKLSGKKIGLKPAGGISTFEDSVRWI---------YLVLIMLGPDWLNKDLFRIGA 92
I+ + L+ ++ + GG+S+ +D++ I Y L GP + K
Sbjct: 288 IREMYALTQGRVPIIGVGGVSSGQDALEKIRAGASLVQLYTALTFWGPPVVGK------- 340
Query: 93 SSLLNNILQELEAL 106
+ +ELEAL
Sbjct: 341 ------VKRELEAL 348
>1fcd_A Flavocytochrome C sulfide dehydrogenase (flavin- binding subunit);
electron transport(flavocytochrome); HET: FAD HEM; 2.53A
{Allochromatium vinosum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Length = 401
Score = 24.3 bits (53), Expect = 9.7
Identities = 19/81 (23%), Positives = 26/81 (32%), Gaps = 8/81 (9%)
Query: 15 RTLHGRGPDSTSYGNVCNTCGII----MCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRW 70
L G P + SY N C + + A + G I P G T D+ W
Sbjct: 321 VLLKGEEPGTPSYLNTCY-SILAPAYGISVAAIYRPNADGSAIESVPDSGGVTPVDAPDW 379
Query: 71 IYLVLIMLGPDWLN---KDLF 88
+ + W N D F
Sbjct: 380 VLEREVQYAYSWYNNIVHDTF 400
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.141 0.443
Gapped
Lambda K H
0.267 0.0676 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,657,477
Number of extensions: 86794
Number of successful extensions: 252
Number of sequences better than 10.0: 1
Number of HSP's gapped: 249
Number of HSP's successfully gapped: 39
Length of query: 106
Length of database: 6,701,793
Length adjustment: 71
Effective length of query: 35
Effective length of database: 4,719,402
Effective search space: 165179070
Effective search space used: 165179070
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.5 bits)