RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy969
(106 letters)
>d2a4aa1 c.1.10.1 (A:3-258) Fructose-1,6-bisphosphate aldolase
{Plasmodium yoelii yoelii [TaxId: 73239]}
Length = 256
Score = 80.2 bits (197), Expect = 2e-20
Identities = 28/103 (27%), Positives = 47/103 (45%), Gaps = 9/103 (8%)
Query: 5 RKVAFKGSNF-RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHF---HKLSGKKIGLKPAGG 60
V ++F +T G+ + + +V + AIK + + KIGLK +GG
Sbjct: 158 LAVLNGNADFIKTSTGKVQINATPSSV-----EYIIKAIKEYIKNNPEKNNKIGLKVSGG 212
Query: 61 ISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGASSLLNNILQEL 103
IS + +I L L + D FRIG+SSL+ + + +
Sbjct: 213 ISDLNTASHYILLARRFLSSLACHPDNFRIGSSSLVIKLRKVI 255
>d1p1xa_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC
{Escherichia coli [TaxId: 562]}
Length = 250
Score = 76.7 bits (188), Expect = 5e-19
Identities = 26/81 (32%), Positives = 39/81 (48%)
Query: 24 STSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWL 83
ST V T K +G KPAGG+ T ED+ +++ + + G DW
Sbjct: 169 STGKVAVNATPESARIMMEVIRDMGVEKTVGFKPAGGVRTAEDAQKYLAIADELFGADWA 228
Query: 84 NKDLFRIGASSLLNNILQELE 104
+ +R GASSLL ++L+ L
Sbjct: 229 DARHYRFGASSLLASLLKALG 249
>d1vcva1 c.1.10.1 (A:1-226) Deoxyribose-phosphate aldolase DeoC
{Archaeon Pyrobaculum aerophilum [TaxId: 13773]}
Length = 226
Score = 61.6 bits (149), Expect = 2e-13
Identities = 16/83 (19%), Positives = 30/83 (36%), Gaps = 6/83 (7%)
Query: 16 TLHGRGPDSTSYGNVCNT-CGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLV 74
+ G ++ + +AI + K G ++G+K AGGI T E +
Sbjct: 147 SSTGFAEEAYAARQGNPVHSTPERAAAIARYIKEKGYRLGVKMAGGIRTREQAKAI---- 202
Query: 75 LIMLGPDWLNKDLFRIGASSLLN 97
+ + R+G S+
Sbjct: 203 -VDAIGWGEDPARVRLGTSTPEA 224
>d1mzha_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Aquifex
aeolicus [TaxId: 63363]}
Length = 225
Score = 56.1 bits (135), Expect = 2e-11
Identities = 16/71 (22%), Positives = 27/71 (38%), Gaps = 13/71 (18%)
Query: 35 GIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGASS 94
++ + +I +K +GGI E ++ I G D RIG SS
Sbjct: 158 RGTTLEEVRLIKSSAKGRIKVKASGGIRDLETAISM-----IEAGAD-------RIGTSS 205
Query: 95 LLNNILQELEA 105
+ +I +E
Sbjct: 206 GI-SIAEEFLK 215
>d1o0ya_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC
{Thermotoga maritima [TaxId: 2336]}
Length = 251
Score = 53.1 bits (127), Expect = 3e-10
Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 4/61 (6%)
Query: 35 GIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLG----PDWLNKDLFRI 90
G + + G ++G+K +GGI TFED+V+ I +G + R
Sbjct: 191 GGATAEDVHLMKWIVGDEMGVKASGGIRTFEDAVKMIMYGADRIGTSSGVKIVQGGEERY 250
Query: 91 G 91
G
Sbjct: 251 G 251
>d1n7ka_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Archaeon
Aeropyrum pernix [TaxId: 56636]}
Length = 234
Score = 52.3 bits (125), Expect = 4e-10
Identities = 16/72 (22%), Positives = 29/72 (40%), Gaps = 13/72 (18%)
Query: 35 GIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGASS 94
G + + +G+K +GGI + D+V + G D IG SS
Sbjct: 175 GGDPVTVFRLASLAKPLGMGVKASGGIRSGIDAVL-----AVGAGAD-------IIGTSS 222
Query: 95 LLNNILQELEAL 106
+ +L+ ++L
Sbjct: 223 AV-KVLESFKSL 233
>d1ub3a_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Thermus
thermophilus [TaxId: 274]}
Length = 211
Score = 43.8 bits (103), Expect = 5e-07
Identities = 12/54 (22%), Positives = 22/54 (40%), Gaps = 12/54 (22%)
Query: 41 AIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGASS 94
+ +++ + +K AGGI E ++R + G R+G SS
Sbjct: 164 DVALLVRVAQGRAQVKAAGGIRDRETALRM-----LKAGAS-------RLGTSS 205
>d1tv5a1 c.1.4.1 (A:158-566) Dihydroorotate dehydrogenase
{Plasmodium falciparum [TaxId: 5833]}
Length = 409
Score = 26.8 bits (58), Expect = 0.47
Identities = 16/74 (21%), Positives = 26/74 (35%), Gaps = 22/74 (29%)
Query: 42 IKHFHKLSGKKIGLKPAGGISTFED---------SVRWIYLVLIMLGPDWLNKDLFRIGA 92
I + + K+I + +GGI + D SV +Y L+ G +
Sbjct: 332 ICEMYNYTNKQIPIIASGGIFSGLDALEKIEAGASVCQLYSCLVFNGMKSAVQ------- 384
Query: 93 SSLLNNILQELEAL 106
I +EL L
Sbjct: 385 ------IKRELNHL 392
>d1f76a_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Escherichia coli
[TaxId: 562]}
Length = 336
Score = 26.9 bits (58), Expect = 0.52
Identities = 9/53 (16%), Positives = 17/53 (32%), Gaps = 9/53 (16%)
Query: 42 IKHFHKLSGKKIGLKPAGGISTFEDSVRWI---------YLVLIMLGPDWLNK 85
I+ ++ + GGI + + I Y I GP + +
Sbjct: 279 IRRLSLELNGRLPIIGVGGIDSVIAAREKIAAGASLVQIYSGFIFKGPPLIKE 331
>d1hdla_ g.68.1.2 (A:) Serine proteinase inhibitor lekti {Human
(Homo sapiens) [TaxId: 9606]}
Length = 55
Score = 25.2 bits (55), Expect = 0.63
Identities = 5/15 (33%), Positives = 7/15 (46%)
Query: 20 RGPDSTSYGNVCNTC 34
+ D + N C TC
Sbjct: 30 QSLDGIMFINKCATC 44
>d1d3ga_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 367
Score = 26.5 bits (57), Expect = 0.78
Identities = 17/85 (20%), Positives = 32/85 (37%), Gaps = 22/85 (25%)
Query: 31 CNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWI---------YLVLIMLGPD 81
+ I+ + L+ ++ + GG+S+ +D++ I Y L GP
Sbjct: 277 GKPLRDLSTQTIREMYALTQGRVPIIGVGGVSSGQDALEKIRAGASLVQLYTALTFWGPP 336
Query: 82 WLNKDLFRIGASSLLNNILQELEAL 106
+ K + +ELEAL
Sbjct: 337 VVGK-------------VKRELEAL 348
>d1h0za_ g.68.1.2 (A:) Serine proteinase inhibitor lekti {Human
(Homo sapiens) [TaxId: 9606]}
Length = 68
Score = 23.7 bits (51), Expect = 2.8
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 20 RGPDSTSYGNVCNTC 34
+GPD +GN C+ C
Sbjct: 34 QGPDGKVHGNTCSMC 48
>d1rpxa_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Potato
(Solanum tuberosum) [TaxId: 4113]}
Length = 230
Score = 24.2 bits (52), Expect = 4.0
Identities = 14/64 (21%), Positives = 20/64 (31%), Gaps = 8/64 (12%)
Query: 22 PDSTSYGNVCNTCGIIMCSAIKHFHKL------SGKKIG--LKPAGGISTFEDSVRWIYL 73
S+ H H+ G K G L P ++ E + + L
Sbjct: 84 VPDFIKAGADIVSVHCEQSSTIHLHRTINQIKSLGAKAGVVLNPGTPLTAIEYVLDAVDL 143
Query: 74 VLIM 77
VLIM
Sbjct: 144 VLIM 147
>d2cqga1 d.58.7.1 (A:96-185) TAR DNA-binding protein 43, TDP-43
{Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 23.4 bits (50), Expect = 4.2
Identities = 3/18 (16%), Positives = 6/18 (33%)
Query: 41 AIKHFHKLSGKKIGLKPA 58
+ H + G+ K
Sbjct: 66 VMSQRHMIDGRWCDCKLP 83
>d1y0za_ b.82.2.8 (A:) Clavaminate synthase-like protein At3g21360
{Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 327
Score = 24.1 bits (51), Expect = 4.9
Identities = 5/10 (50%), Positives = 6/10 (60%)
Query: 13 NFRTLHGRGP 22
N+ LH R P
Sbjct: 305 NWAVLHSRRP 314
>d1zbdb_ g.50.1.1 (B:) Effector domain of rabphilin-3a {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 124
Score = 23.2 bits (49), Expect = 7.0
Identities = 5/28 (17%), Positives = 8/28 (28%)
Query: 25 TSYGNVCNTCGIIMCSAIKHFHKLSGKK 52
S VC C +C+ +
Sbjct: 62 GSASVVCEDCKKNVCTKCGVETSNNRPH 89
>d1ryoa_ c.94.1.2 (A:) Transferrin {Human (Homo sapiens) [TaxId:
9606]}
Length = 324
Score = 23.5 bits (50), Expect = 8.1
Identities = 9/37 (24%), Positives = 13/37 (35%)
Query: 14 FRTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSG 50
F D T + +C C CS + + SG
Sbjct: 151 FSGSCAPCADGTDFPQLCQLCPGCGCSTLNQYFGYSG 187
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.141 0.443
Gapped
Lambda K H
0.267 0.0570 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 412,902
Number of extensions: 17301
Number of successful extensions: 73
Number of sequences better than 10.0: 1
Number of HSP's gapped: 71
Number of HSP's successfully gapped: 19
Length of query: 106
Length of database: 2,407,596
Length adjustment: 66
Effective length of query: 40
Effective length of database: 1,501,416
Effective search space: 60056640
Effective search space used: 60056640
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.2 bits)