BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9690
(111 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P25439|BRM_DROME ATP-dependent helicase brm OS=Drosophila melanogaster GN=brm PE=1
SV=2
Length = 1638
Score = 102 bits (253), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 71/116 (61%), Positives = 90/116 (77%), Gaps = 11/116 (9%)
Query: 1 MFDQKSTGSERHEFLQTILHQ-DDEEEEENEVPDDETVNQLIARTEDELTLFQKMDAERR 59
MFDQKSTGSER +FLQTILHQ D+EEEEENEVPDDE +N +IAR+E+E+ +F++MDAER+
Sbjct: 1251 MFDQKSTGSERQQFLQTILHQDDNEEEEENEVPDDEMINMMIARSEEEIEIFKRMDAERK 1310
Query: 60 K--GETKP---RLVEIKELPDWMVKDDDEVENSMYEEEREREKEEALMGRGSRQRK 110
K E P RL++ ELPDW+ KDDDEVE Y+ + E+ ++GRGSRQRK
Sbjct: 1311 KEDEEIHPGRERLIDESELPDWLTKDDDEVERFHYQYD-----EDTILGRGSRQRK 1361
>sp|P51532|SMCA4_HUMAN Transcription activator BRG1 OS=Homo sapiens GN=SMARCA4 PE=1 SV=2
Length = 1647
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 64/148 (43%), Positives = 80/148 (54%), Gaps = 43/148 (29%)
Query: 1 MFDQKSTGSERHEFLQTILHQDDEEE---------------------------------E 27
MFDQKS+ ER FLQ IL ++++E E
Sbjct: 1233 MFDQKSSSHERRAFLQAILEHEEQDESRHCSTGSGSASFAHTAPPPAGVNPDLEEPPLKE 1292
Query: 28 ENEVPDDETVNQLIARTEDELTLFQKMDAERRKGET-----KPRLVEIKELPDWMVKDDD 82
E+EVPDDETVNQ+IAR E+E LF +MD +RR+ E KPRL+E ELP W++KDD
Sbjct: 1293 EDEVPDDETVNQMIARHEEEFDLFMRMDLDRRREEARNPKRKPRLMEEDELPSWIIKDDA 1352
Query: 83 EVENSMYEEEREREKEEALMGRGSRQRK 110
EVE EEE E+ + GRGSR RK
Sbjct: 1353 EVERLTCEEEEEK-----MFGRGSRHRK 1375
>sp|A7Z019|SMCA4_BOVIN Transcription activator BRG1 OS=Bos taurus GN=SMARCA4 PE=2 SV=1
Length = 1606
Score = 86.7 bits (213), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 64/115 (55%), Positives = 80/115 (69%), Gaps = 10/115 (8%)
Query: 1 MFDQKSTGSERHEFLQTILHQDDEEEEENEVPDDETVNQLIARTEDELTLFQKMDAERRK 60
MFDQKS+ ER FLQ IL ++++EEE+EVPDDETVNQ+IAR E+E LF +MD +RR+
Sbjct: 1225 MFDQKSSSHERRAFLQAILEHEEQDEEEDEVPDDETVNQMIARHEEEFDLFMRMDLDRRR 1284
Query: 61 GET-----KPRLVEIKELPDWMVKDDDEVENSMYEEEREREKEEALMGRGSRQRK 110
E KPRL+E ELP W++KDD EVE EEE E+ + GRGSR RK
Sbjct: 1285 EEARNPKRKPRLMEEDELPSWIIKDDAEVERLTCEEEEEK-----MFGRGSRHRK 1334
>sp|Q8K1P7|SMCA4_RAT Transcription activator BRG1 OS=Rattus norvegicus GN=Smarca4 PE=1
SV=1
Length = 1613
Score = 86.7 bits (213), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 64/115 (55%), Positives = 80/115 (69%), Gaps = 10/115 (8%)
Query: 1 MFDQKSTGSERHEFLQTILHQDDEEEEENEVPDDETVNQLIARTEDELTLFQKMDAERRK 60
MFDQKS+ ER FLQ IL ++++EEE+EVPDDETVNQ+IAR E+E LF +MD +RR+
Sbjct: 1233 MFDQKSSSHERRAFLQAILEHEEQDEEEDEVPDDETVNQMIARHEEEFDLFMRMDLDRRR 1292
Query: 61 GET-----KPRLVEIKELPDWMVKDDDEVENSMYEEEREREKEEALMGRGSRQRK 110
E KPRL+E ELP W++KDD EVE EEE E+ + GRGSR RK
Sbjct: 1293 EEARNPKRKPRLMEEDELPSWIIKDDAEVERLTCEEEEEK-----MFGRGSRHRK 1342
>sp|Q3TKT4|SMCA4_MOUSE Transcription activator BRG1 OS=Mus musculus GN=Smarca4 PE=1 SV=1
Length = 1613
Score = 86.7 bits (213), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 64/115 (55%), Positives = 80/115 (69%), Gaps = 10/115 (8%)
Query: 1 MFDQKSTGSERHEFLQTILHQDDEEEEENEVPDDETVNQLIARTEDELTLFQKMDAERRK 60
MFDQKS+ ER FLQ IL ++++EEE+EVPDDETVNQ+IAR E+E LF +MD +RR+
Sbjct: 1233 MFDQKSSSHERRAFLQAILEHEEQDEEEDEVPDDETVNQMIARHEEEFDLFMRMDLDRRR 1292
Query: 61 GET-----KPRLVEIKELPDWMVKDDDEVENSMYEEEREREKEEALMGRGSRQRK 110
E KPRL+E ELP W++KDD EVE EEE E+ + GRGSR RK
Sbjct: 1293 EEARNPKRKPRLMEEDELPSWIIKDDAEVERLTCEEEEEK-----MFGRGSRHRK 1342
>sp|Q6DIC0|SMCA2_MOUSE Probable global transcription activator SNF2L2 OS=Mus musculus
GN=Smarca2 PE=1 SV=1
Length = 1577
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 63/115 (54%), Positives = 80/115 (69%), Gaps = 10/115 (8%)
Query: 1 MFDQKSTGSERHEFLQTILHQDDEEEEENEVPDDETVNQLIARTEDELTLFQKMDAERRK 60
MFDQKS+ ER FLQ IL ++E EEE+EVPDDET+NQ+IAR E+E LF +MD +RR+
Sbjct: 1208 MFDQKSSSHERRAFLQAILEHEEENEEEDEVPDDETLNQMIARREEEFDLFMRMDMDRRR 1267
Query: 61 -----GETKPRLVEIKELPDWMVKDDDEVENSMYEEEREREKEEALMGRGSRQRK 110
+ KPRL+E ELP W++KDD EVE EEE E+ + GRGSRQR+
Sbjct: 1268 EDARNPKRKPRLMEEDELPSWIIKDDAEVERLTCEEEEEK-----IFGRGSRQRR 1317
>sp|P51531|SMCA2_HUMAN Probable global transcription activator SNF2L2 OS=Homo sapiens
GN=SMARCA2 PE=1 SV=2
Length = 1590
Score = 84.7 bits (208), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 63/115 (54%), Positives = 80/115 (69%), Gaps = 10/115 (8%)
Query: 1 MFDQKSTGSERHEFLQTILHQDDEEEEENEVPDDETVNQLIARTEDELTLFQKMDAERRK 60
MFDQKS+ ER FLQ IL ++E EEE+EVPDDET+NQ+IAR E+E LF +MD +RR+
Sbjct: 1203 MFDQKSSSHERRAFLQAILEHEEENEEEDEVPDDETLNQMIARREEEFDLFMRMDMDRRR 1262
Query: 61 -----GETKPRLVEIKELPDWMVKDDDEVENSMYEEEREREKEEALMGRGSRQRK 110
+ KPRL+E ELP W++KDD EVE EEE E+ + GRGSRQR+
Sbjct: 1263 EDARNPKRKPRLMEEDELPSWIIKDDAEVERLTCEEEEEK-----IFGRGSRQRR 1312
>sp|O94421|SNF22_SCHPO SWI/SNF chromatin-remodeling complex subunit snf22
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=snf22 PE=1 SV=2
Length = 1680
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/111 (39%), Positives = 64/111 (57%), Gaps = 18/111 (16%)
Query: 2 FDQKSTGSERHEFLQTILHQD---DEEEEENEVPDDETVNQLIARTEDELTLFQKMDAER 58
FD KST ER FL+++L D D + E+ DDE +N+LI+RT++EL LF+K+D ER
Sbjct: 1341 FDNKSTPEEREAFLRSLLEHDGDDDHDLTYGELQDDE-LNELISRTDEELVLFKKLDKER 1399
Query: 59 RK----GETKP--RLVEIKELPDWM--------VKDDDEVENSMYEEERER 95
G+ KP RL+ + ELPD+ V+ E+E+ E +R R
Sbjct: 1400 AATDIYGKGKPLERLLTVNELPDFYKVEVDSFAVQSSSELEDQYLERKRRR 1450
>sp|Q9UTN6|SNF21_SCHPO Chromatin structure-remodeling complex subunit snf21
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=snf21 PE=1 SV=1
Length = 1199
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 44/117 (37%), Positives = 72/117 (61%), Gaps = 18/117 (15%)
Query: 2 FDQKSTGSERHEFLQTILHQDDEEEE---ENEVPDDETVNQLIARTEDELTLFQKM--DA 56
FD KST ER FL+++L ++ EEE + E+ DDE +N+++AR +DEL LF++M D
Sbjct: 890 FDNKSTPEEREAFLRSLLENENGEEENDEKGELDDDE-LNEILARGDDELRLFKQMTEDL 948
Query: 57 ERR----KGETKPRLVEIKELPDWMVKDDDEVENSMYEEEREREKEEALMGRGSRQR 109
ER K + K RL+++ ELP++ +++ E + +EE +GRG+R+R
Sbjct: 949 ERESPYGKNKEKERLIQVSELPEFYQREEPEKTTDLLQEEP--------LGRGARRR 997
>sp|P22082|SNF2_YEAST Transcription regulatory protein SNF2 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=SNF2 PE=1 SV=1
Length = 1703
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 64/121 (52%), Gaps = 18/121 (14%)
Query: 2 FDQKSTGSERHEFLQTILHQDDEEEEENEVP-------DDETVNQLIARTEDELTLFQKM 54
FD KST E+ L+++L ++E ++ E D +N+++AR ++E+ + +M
Sbjct: 1241 FDNKSTSEEQEALLRSLLDAEEERRKKRESGVEEEEELKDSEINEILARNDEEMAVLTRM 1300
Query: 55 DAERRKGE----TKPRLVEIKELPDWMVKDDDEVENSMYEEEREREKEEALM-GRGSRQR 109
D +R K E K RL+E ELPD +D E +RE + A+ GRG+R+R
Sbjct: 1301 DEDRSKKEEELGVKSRLLEKSELPDIYSRDIGA------ELKREESESAAVYNGRGARER 1354
Query: 110 K 110
K
Sbjct: 1355 K 1355
>sp|Q6EVK6|BRM_ARATH ATP-dependent helicase BRM OS=Arabidopsis thaliana GN=BRM PE=1 SV=1
Length = 2193
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 56/97 (57%), Gaps = 4/97 (4%)
Query: 2 FDQKSTGSERHEFLQTILHQDDEEEEE-NEVPDDETVNQLIARTEDELTLFQKMDAERRK 60
FDQ++T ER L+T+LH ++ +E ++VP VN++IAR+E+E+ LF +MD E
Sbjct: 1495 FDQRTTHEERRMTLETLLHDEERYQETVHDVPSLHEVNRMIARSEEEVELFDQMDEEFDW 1554
Query: 61 GETKPRLVEIKELPDWMVKDDDEVENSMYEEEREREK 97
E + +++P W+ EV ++ + ++ K
Sbjct: 1555 TE---EMTNHEQVPKWLRASTREVNATVADLSKKPSK 1588
>sp|P32597|STH1_YEAST Nuclear protein STH1/NPS1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=STH1 PE=1 SV=1
Length = 1359
Score = 36.2 bits (82), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 46/85 (54%), Gaps = 12/85 (14%)
Query: 2 FDQKSTGSERHEFLQTIL-HQDDEEEEENEVPDDETVNQLIARTEDELTLFQKMDAERRK 60
FD KST E+ FL+ ++ + + ++++ DD+ +N +AR+ DE LF K+D ER
Sbjct: 945 FDNKSTAEEQEAFLRRLIESETNRDDDDKAELDDDELNDTLARSADEKILFDKIDKERMN 1004
Query: 61 GE-----------TKPRLVEIKELP 74
E PRL+++ ELP
Sbjct: 1005 QERADAKAQGLRVPPPRLIQLDELP 1029
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.307 0.127 0.341
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,897,244
Number of Sequences: 539616
Number of extensions: 1859931
Number of successful extensions: 15309
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 605
Number of HSP's that attempted gapping in prelim test: 12378
Number of HSP's gapped (non-prelim): 2471
length of query: 111
length of database: 191,569,459
effective HSP length: 79
effective length of query: 32
effective length of database: 148,939,795
effective search space: 4766073440
effective search space used: 4766073440
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 55 (25.8 bits)