Query psy9690
Match_columns 111
No_of_seqs 118 out of 230
Neff 4.5
Searched_HMMs 46136
Date Fri Aug 16 17:08:07 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9690.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9690hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0386|consensus 99.9 1.4E-23 3.1E-28 190.4 7.6 105 1-111 863-971 (1157)
2 PF14619 SnAC: Snf2-ATP coupli 99.1 3.5E-11 7.6E-16 80.1 1.6 45 64-111 17-61 (74)
3 PF06465 DUF1087: Domain of Un 75.5 1.7 3.8E-05 28.8 1.4 14 98-111 42-55 (66)
4 PF12464 Mac: Maltose acetyltr 34.9 14 0.0003 22.1 0.2 20 2-21 31-52 (55)
5 PF09860 DUF2087: Uncharacteri 32.2 78 0.0017 20.8 3.4 43 6-52 8-50 (71)
6 PF02026 RyR: RyR domain; Int 24.7 41 0.00088 23.1 1.1 45 35-79 19-70 (94)
7 cd07311 terB_like_1 tellurium 23.8 81 0.0018 23.3 2.6 22 2-23 14-35 (150)
8 PF05546 She9_MDM33: She9 / Md 23.1 79 0.0017 25.2 2.6 23 33-55 72-98 (207)
9 PF14003 YlbE: YlbE-like prote 19.4 99 0.0021 20.5 2.0 16 39-54 16-31 (65)
10 PF05121 GvpK: Gas vesicle pro 19.3 81 0.0018 22.0 1.7 28 13-40 23-50 (88)
No 1
>KOG0386|consensus
Probab=99.89 E-value=1.4e-23 Score=190.41 Aligned_cols=105 Identities=54% Similarity=0.826 Sum_probs=91.6
Q ss_pred CCCCCCCHHHHHHHHHHHhccCcccccccCCCCHHHHHHHhcCChHHHHHHHHHhHHHhcCCC----CCCCCCCCccchh
Q psy9690 1 MFDQKSTGSERHEFLQTILHQDDEEEEENEVPDDETVNQLIARTEDELTLFQKMDAERRKGET----KPRLVEIKELPDW 76 (111)
Q Consensus 1 kFDnkST~eER~a~L~~LLe~~~~~~~~~e~~dDeeLN~~lARseeE~~lF~~mD~ER~~~e~----~~RL~~~~ELP~~ 76 (111)
+|||+||+++|++||++||+.+++ ++++++|||++||+|||||++||++|.+||.+|.+++. +||||.++|+|+|
T Consensus 863 ~fdn~st~~eR~~~Le~~l~~~~~-~~~~~v~~~~~ln~~larseeE~~~f~~md~~r~~~e~~~~~k~rl~ee~e~p~~ 941 (1157)
T KOG0386|consen 863 KFDNKSTAEEREMFLEQLLEMEGD-EEEEEVPDDEVLNSMLARSEEEFELFHKMDEERRATENQQEKKPRLVEEAELPAD 941 (1157)
T ss_pred cccCCCcHHHHHHHHHHHHhCCCc-cccccCCcHHHHHHHHhcchHHHHHHHHhhHHHHhhhhhccccchhhhhhhcHHH
Confidence 699999999999999999999984 45699999999999999999999999999999999665 7899999999999
Q ss_pred hhcCchHHhhhhHHHHHHHHHHHhhccCccccccC
Q psy9690 77 MVKDDDEVENSMYEEEREREKEEALMGRGSRQRKQ 111 (111)
Q Consensus 77 ~~~d~~~~~~~~~~~e~~~e~~~~~~GRG~R~Rk~ 111 (111)
+......++.+..+++ ....+|||+|.||+
T Consensus 942 i~~~~~~~~~~~~~~~-----~~~~~~rg~r~Rke 971 (1157)
T KOG0386|consen 942 IYKRDQGVERLSEEEE-----EEKILGRGRRARKE 971 (1157)
T ss_pred HHhcchhhhhhhhhhh-----hhccccccccccce
Confidence 9888887766555433 33448999999985
No 2
>PF14619 SnAC: Snf2-ATP coupling, chromatin remodelling complex
Probab=99.09 E-value=3.5e-11 Score=80.10 Aligned_cols=45 Identities=44% Similarity=0.686 Sum_probs=31.7
Q ss_pred CCCCCCCCccchhhhcCchHHhhhhHHHHHHHHHHHhhccCccccccC
Q psy9690 64 KPRLVEIKELPDWMVKDDDEVENSMYEEEREREKEEALMGRGSRQRKQ 111 (111)
Q Consensus 64 ~~RL~~~~ELP~~~~~d~~~~~~~~~~~e~~~e~~~~~~GRG~R~Rk~ 111 (111)
+||||+++|||+||+.++..+.. .. ..+.......||||+|+||.
T Consensus 17 p~RLm~e~ELPe~~~~d~~~~~~--~~-~~e~~~~~~~~grG~R~RK~ 61 (74)
T PF14619_consen 17 PSRLMEESELPEWYREDIEEELE--KE-EEEEEAETNEYGRGKRERKE 61 (74)
T ss_pred CccccchhhchHHHHhcchhhhh--hh-hhhhccchhhcccccccccc
Confidence 56999999999999999987621 11 10111223568999999985
No 3
>PF06465 DUF1087: Domain of Unknown Function (DUF1087); InterPro: IPR009463 This is a group of proteins of unknown function.
Probab=75.54 E-value=1.7 Score=28.78 Aligned_cols=14 Identities=57% Similarity=0.949 Sum_probs=11.8
Q ss_pred HHhhccCccccccC
Q psy9690 98 EEALMGRGSRQRKQ 111 (111)
Q Consensus 98 ~~~~~GRG~R~Rk~ 111 (111)
....+|+|+|.||+
T Consensus 42 ~~~~LGKGKR~RKq 55 (66)
T PF06465_consen 42 EEKALGKGKRSRKQ 55 (66)
T ss_pred HHHHhccccccccc
Confidence 45678999999996
No 4
>PF12464 Mac: Maltose acetyltransferase ; InterPro: IPR024688 Maltose acetyltransferase uses acetyl-CoA as acetyl donor to acetylate cytoplasmic maltose [], while galactoside acetyltransferase act on galactosides. ; GO: 0016407 acetyltransferase activity; PDB: 3V4E_A 4EGG_E 4DCL_A 3FTT_A 1KRR_B 1KRU_A 1KRV_C 1KQA_A 3NZ2_J 3ECT_A ....
Probab=34.86 E-value=14 Score=22.10 Aligned_cols=20 Identities=25% Similarity=0.554 Sum_probs=15.2
Q ss_pred CCCCC--CHHHHHHHHHHHhcc
Q psy9690 2 FDQKS--TGSERHEFLQTILHQ 21 (111)
Q Consensus 2 FDnkS--T~eER~a~L~~LLe~ 21 (111)
||+.+ ..++|.++|+.||-.
T Consensus 31 ~N~~~~~d~~~r~~llk~l~g~ 52 (55)
T PF12464_consen 31 YNQTPPEDPEERQELLKELFGS 52 (55)
T ss_dssp HHHSHTTTHHHHHHHHHHHSSB
T ss_pred HHcCCCCCHHHHHHHHHHHhhh
Confidence 44444 678999999999864
No 5
>PF09860 DUF2087: Uncharacterized protein conserved in bacteria (DUF2087); InterPro: IPR018656 This domain, found in various hypothetical prokaryotic proteins and transcriptional activators, has no known function.
Probab=32.22 E-value=78 Score=20.76 Aligned_cols=43 Identities=16% Similarity=0.249 Sum_probs=31.2
Q ss_pred CCHHHHHHHHHHHhccCcccccccCCCCHHHHHHHhcCChHHHHHHH
Q psy9690 6 STGSERHEFLQTILHQDDEEEEENEVPDDETVNQLIARTEDELTLFQ 52 (111)
Q Consensus 6 ST~eER~a~L~~LLe~~~~~~~~~e~~dDeeLN~~lARseeE~~lF~ 52 (111)
|....|..+|..|...-+ .....+..|||++|+.--+.+.+..
T Consensus 8 ~k~~~r~~iL~~l~~~f~----~g~~y~E~EVN~~L~~~~~D~a~LR 50 (71)
T PF09860_consen 8 SKRKKRLVILEYLASRFE----PGREYSEKEVNEILKRFFDDYATLR 50 (71)
T ss_pred ccHHHHHHHHHHHHHhCC----CCCccCHHHHHHHHHHHcccHHHHH
Confidence 456788899999887654 4567788899999987655444433
No 6
>PF02026 RyR: RyR domain; InterPro: IPR003032 This domain is called RyR for Ryanodine receptor []. The domain is found in four copies in the ryanodine receptor. The function of this domain is unknown.; PDB: 4ETV_A 3RQR_A 4ETT_A 4ERT_A 4ESU_A 4ETU_A 4ERV_A 3NRT_E.
Probab=24.68 E-value=41 Score=23.08 Aligned_cols=45 Identities=20% Similarity=0.260 Sum_probs=31.9
Q ss_pred HHHHHHhcCChHHHHHHHHHh------HHHhcCCC-CCCCCCCCccchhhhc
Q psy9690 35 ETVNQLIARTEDELTLFQKMD------AERRKGET-KPRLVEIKELPDWMVK 79 (111)
Q Consensus 35 eeLN~~lARseeE~~lF~~mD------~ER~~~e~-~~RL~~~~ELP~~~~~ 79 (111)
+.|=+.||.+..++....+|. ..|....+ .|-|+..+.||+--+.
T Consensus 19 ~~~~E~lAen~H~~Wa~~r~~~GW~yG~~~d~~~k~hP~Lvpy~~L~e~eK~ 70 (94)
T PF02026_consen 19 EELIEKLAENEHDRWAKERIEQGWTYGEVRDDSRKTHPCLVPYDELSEEEKE 70 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT-BE-SSHBTTTTBETT-S-GGGS-HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccceeccccccCCCCCCCCcChhhCCHHHHH
Confidence 567788999999999999997 34433333 6899999999987554
No 7
>cd07311 terB_like_1 tellurium resistance terB-like protein, subgroup 1. This family includes several uncharacterized bacterial proteins. The prototype of this CD is tellurite resistance protein from Nostoc punctiforme that belongs to COG3793. Its precise biological function and its mechanism responsible for tellurium resistance still remains rather poorly understood.
Probab=23.79 E-value=81 Score=23.33 Aligned_cols=22 Identities=27% Similarity=0.502 Sum_probs=19.9
Q ss_pred CCCCCCHHHHHHHHHHHhccCc
Q psy9690 2 FDQKSTGSERHEFLQTILHQDD 23 (111)
Q Consensus 2 FDnkST~eER~a~L~~LLe~~~ 23 (111)
||+-||..+..++|++||--..
T Consensus 14 ~~~~~~~~~~~~~~~~Ll~iAk 35 (150)
T cd07311 14 FDQIPTNQDKLAYLKALLVCAK 35 (150)
T ss_pred cccCCCcccHHHHHHHHHHHHH
Confidence 8999999999999999997665
No 8
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=23.12 E-value=79 Score=25.18 Aligned_cols=23 Identities=26% Similarity=0.511 Sum_probs=20.2
Q ss_pred CHHHHHHHhcC----ChHHHHHHHHHh
Q psy9690 33 DDETVNQLIAR----TEDELTLFQKMD 55 (111)
Q Consensus 33 dDeeLN~~lAR----seeE~~lF~~mD 55 (111)
+-.|+|.+|+| |+..++-|..+=
T Consensus 72 sQrEvn~LLqRK~sWs~~DleRFT~Ly 98 (207)
T PF05546_consen 72 SQREVNELLQRKHSWSPADLERFTELY 98 (207)
T ss_pred HHHHHHHHHhcccCCChHHHHHHHHHH
Confidence 45699999999 999999998875
No 9
>PF14003 YlbE: YlbE-like protein
Probab=19.39 E-value=99 Score=20.45 Aligned_cols=16 Identities=31% Similarity=0.663 Sum_probs=13.6
Q ss_pred HHhcCChHHHHHHHHH
Q psy9690 39 QLIARTEDELTLFQKM 54 (111)
Q Consensus 39 ~~lARseeE~~lF~~m 54 (111)
.+|+|+++++..|+.-
T Consensus 16 R~LsR~P~~l~~fe~~ 31 (65)
T PF14003_consen 16 RILSRNPEELEAFEKE 31 (65)
T ss_pred HHHccCHHHHHHHHHH
Confidence 5799999999999763
No 10
>PF05121 GvpK: Gas vesicle protein K ; InterPro: IPR007805 Gas vesicles are intracellular, protein-coated, and hollow organelles found in cyanobacteria and halophilic archaea. They are permeable to ambient gases by diffusion and provide buoyancy, enabling cells to move upwards in liquid to access oxygen and/or light. Proteins containing this domain are involved in the formation of gas vesicles [].; GO: 0031412 gas vesicle organization
Probab=19.33 E-value=81 Score=22.00 Aligned_cols=28 Identities=18% Similarity=0.368 Sum_probs=22.8
Q ss_pred HHHHHHhccCcccccccCCCCHHHHHHH
Q psy9690 13 EFLQTILHQDDEEEEENEVPDDETVNQL 40 (111)
Q Consensus 13 a~L~~LLe~~~~~~~~~e~~dDeeLN~~ 40 (111)
++|+.||+...-...+.+.+++++|.++
T Consensus 23 ELLRqlmErQAiRRme~G~Lse~qiErl 50 (88)
T PF05121_consen 23 ELLRQLMERQAIRRMEAGSLSEEQIERL 50 (88)
T ss_pred HHHHHHHHHHHHHHhccCCCCHHHHHHH
Confidence 5788898887755668889999999876
Done!