Query psy9690
Match_columns 111
No_of_seqs 118 out of 230
Neff 4.5
Searched_HMMs 29240
Date Fri Aug 16 17:08:31 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9690.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9690hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l2l_A Transcriptional repress 36.0 24 0.00081 20.8 2.1 14 6-19 1-14 (43)
2 1j2m_A CPI-17, 17-kDa PKC-pote 34.4 23 0.00077 24.3 2.2 31 6-43 63-93 (99)
3 1ngm_B Transcription factor II 21.2 40 0.0014 21.7 1.4 38 17-55 16-53 (72)
4 3lqv_P Splicing factor 3B subu 16.0 50 0.0017 19.0 0.9 16 27-42 18-33 (39)
5 2lpe_A Kinase suppressor of RA 12.7 1.4E+02 0.005 21.5 2.8 11 32-42 115-125 (149)
6 3ff5_A PEX14P, peroxisomal bio 12.2 74 0.0025 19.3 1.0 14 31-44 41-54 (54)
7 2fho_A Spliceosomal protein SF 12.1 65 0.0022 19.2 0.7 15 28-42 18-32 (47)
8 2ahq_A Sigma-54, RNA polymeras 11.4 3.2E+02 0.011 17.2 4.6 33 7-43 17-49 (76)
9 2qho_B E3 ubiquitin-protein li 10.7 1.1E+02 0.0037 18.6 1.3 14 34-47 40-53 (53)
10 1mzw_B U4/U6 snRNP 60KDA prote 8.2 2.2E+02 0.0076 15.2 1.9 13 7-19 19-31 (31)
No 1
>2l2l_A Transcriptional repressor P66-alpha; DNA methylation, coiled-coil, NURD, MBD2, P66alpha, transfer; NMR {Homo sapiens}
Probab=36.02 E-value=24 Score=20.80 Aligned_cols=14 Identities=14% Similarity=0.387 Sum_probs=12.1
Q ss_pred CCHHHHHHHHHHHh
Q psy9690 6 STGSERHEFLQTIL 19 (111)
Q Consensus 6 ST~eER~a~L~~LL 19 (111)
|++++|+.+++.|=
T Consensus 1 ~s~~ere~~i~~Lr 14 (43)
T 2l2l_A 1 GSPEERERMIKQLK 14 (43)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 78999999999884
No 2
>1j2m_A CPI-17, 17-kDa PKC-potentiated inhibitory protein of PP1; helix bundle, protein binding; NMR {Sus scrofa} SCOP: a.165.1.1 PDB: 2rlt_A* 1j2n_A 1k5o_A
Probab=34.39 E-value=23 Score=24.28 Aligned_cols=31 Identities=23% Similarity=0.435 Sum_probs=23.6
Q ss_pred CCHHHHHHHHHHHhccCcccccccCCCCHHHHHHHhcC
Q psy9690 6 STGSERHEFLQTILHQDDEEEEENEVPDDETVNQLIAR 43 (111)
Q Consensus 6 ST~eER~a~L~~LLe~~~~~~~~~e~~dDeeLN~~lAR 43 (111)
+|.++|+..|+.||..... |+.+=||++|.|
T Consensus 63 ~sdeeR~~~LqelL~~C~~-------ptE~FI~eLL~r 93 (99)
T 1j2m_A 63 ESEEERSRKIQGLLKSCTN-------PTENFVQELLVK 93 (99)
T ss_dssp TTTTHHHHHHHHHHHTTSC-------CCHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHcCC-------CHHHHHHHHHHH
Confidence 5788999999999987662 555678887765
No 3
>1ngm_B Transcription factor IIIB BRF1 subunit; TFIIIB, TBP, TAF, protein-DNA complex, transcription/DNA complex; 2.95A {Saccharomyces cerevisiae} SCOP: j.104.1.1
Probab=21.15 E-value=40 Score=21.70 Aligned_cols=38 Identities=24% Similarity=0.294 Sum_probs=26.6
Q ss_pred HHhccCcccccccCCCCHHHHHHHhcCChHHHHHHHHHh
Q psy9690 17 TILHQDDEEEEENEVPDDETVNQLIARTEDELTLFQKMD 55 (111)
Q Consensus 17 ~LLe~~~~~~~~~e~~dDeeLN~~lARseeE~~lF~~mD 55 (111)
++|....++...-+..||+||...| .|++|..+=.+|=
T Consensus 16 ~~l~~~~dd~~~lsDiDD~Eid~yi-LteeEv~~K~~iW 53 (72)
T 1ngm_B 16 TYLSKVSDDPDNLEDVDDEELNAHL-LNEEASKLKERIW 53 (72)
T ss_dssp HHHTTSCCCSSCCTTSCCSSGGGSS-CCHHHHHHHHHHH
T ss_pred hHHHhccCCccccccCCHHHHHHhh-CCHHHHHHHHHHH
Confidence 4555555444555667899999998 5999988765553
No 4
>3lqv_P Splicing factor 3B subunit 1; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} PDB: 2f9d_P 2f9j_P
Probab=15.98 E-value=50 Score=19.04 Aligned_cols=16 Identities=25% Similarity=0.432 Sum_probs=12.8
Q ss_pred cccCCCCHHHHHHHhc
Q psy9690 27 EENEVPDDETVNQLIA 42 (111)
Q Consensus 27 ~~~e~~dDeeLN~~lA 42 (111)
+-+--++|++|+.||-
T Consensus 18 ~RNrpltDEeLD~mLP 33 (39)
T 3lqv_P 18 ERNRPLSDEELDAMFP 33 (39)
T ss_dssp HTTCCCCHHHHHHTCC
T ss_pred hhcCCCCHHHHHHhCC
Confidence 4566789999999874
No 5
>2lpe_A Kinase suppressor of RAS 1; SAM domain, CC-SAM, coiled-coil, signaling protein, scaffold protein; NMR {Mus musculus}
Probab=12.70 E-value=1.4e+02 Score=21.53 Aligned_cols=11 Identities=9% Similarity=0.386 Sum_probs=9.7
Q ss_pred CCHHHHHHHhc
Q psy9690 32 PDDETVNQLIA 42 (111)
Q Consensus 32 ~dDeeLN~~lA 42 (111)
++|.+|++||.
T Consensus 115 msd~evr~~L~ 125 (149)
T 2lpe_A 115 MDEAKAKEMLR 125 (149)
T ss_dssp SCHHHHHHHHH
T ss_pred cCHHHHHHHHH
Confidence 88999999994
No 6
>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}
Probab=12.19 E-value=74 Score=19.29 Aligned_cols=14 Identities=14% Similarity=0.214 Sum_probs=11.5
Q ss_pred CCCHHHHHHHhcCC
Q psy9690 31 VPDDETVNQLIART 44 (111)
Q Consensus 31 ~~dDeeLN~~lARs 44 (111)
-++++||...|+||
T Consensus 41 GLt~~EI~~Al~rs 54 (54)
T 3ff5_A 41 GLTDEEIDLAFQQS 54 (54)
T ss_dssp TCCHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHcC
Confidence 46888999999886
No 7
>2fho_A Spliceosomal protein SF3B155; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=12.07 E-value=65 Score=19.19 Aligned_cols=15 Identities=20% Similarity=0.381 Sum_probs=11.9
Q ss_pred ccCCCCHHHHHHHhc
Q psy9690 28 ENEVPDDETVNQLIA 42 (111)
Q Consensus 28 ~~e~~dDeeLN~~lA 42 (111)
-+--++|++|+.||-
T Consensus 18 rnrpltDEeLD~~LP 32 (47)
T 2fho_A 18 RNRPLSDEELDAMFP 32 (47)
T ss_dssp CCCCSCTTHHHHHSC
T ss_pred ccCCCCHHHHHHhCC
Confidence 345689999999985
No 8
>2ahq_A Sigma-54, RNA polymerase sigma factor RPON; sigma-54,sigma factors, solution structure, transcription; NMR {Aquifex aeolicus} PDB: 2o8k_A 2o9l_A
Probab=11.37 E-value=3.2e+02 Score=17.19 Aligned_cols=33 Identities=15% Similarity=0.379 Sum_probs=25.3
Q ss_pred CHHHHHHHHHHHhccCcccccccCCCCHHHHHHHhcC
Q psy9690 7 TGSERHEFLQTILHQDDEEEEENEVPDDETVNQLIAR 43 (111)
Q Consensus 7 T~eER~a~L~~LLe~~~~~~~~~e~~dDeeLN~~lAR 43 (111)
|.+.=+++|+.|+..++ -...++|+.|-++|+.
T Consensus 17 S~~~Ik~~Ik~lI~~Ed----~~kPlSD~~I~~~L~~ 49 (76)
T 2ahq_A 17 TQGELMKLIKEIVENED----KRKPYSDQEIANILKE 49 (76)
T ss_dssp CHHHHHHHHHHHGGGCC----SSSCCCHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHhcC----CCCCCCHHHHHHHHHH
Confidence 55666788888988665 3567899999999953
No 9
>2qho_B E3 ubiquitin-protein ligase EDD1; protein-protein complex, protein binding/ligase complex; 1.85A {Homo sapiens}
Probab=10.70 E-value=1.1e+02 Score=18.64 Aligned_cols=14 Identities=29% Similarity=0.681 Sum_probs=7.3
Q ss_pred HHHHHHHhcCChHH
Q psy9690 34 DETVNQLIARTEDE 47 (111)
Q Consensus 34 DeeLN~~lARseeE 47 (111)
...+|.+|.|.+++
T Consensus 40 N~AvNNlLsRDd~~ 53 (53)
T 2qho_B 40 NLAVNNLLSRDDED 53 (53)
T ss_dssp HHHHHHHHC-----
T ss_pred HHHHHHHhccccCC
Confidence 35799999998874
No 10
>1mzw_B U4/U6 snRNP 60KDA protein; cyclophilin, peptidyl-prolyl-CIS/trans isomerase, spliceosome, U4/U6-60K protein, WD protein; 2.00A {Homo sapiens}
Probab=8.23 E-value=2.2e+02 Score=15.22 Aligned_cols=13 Identities=46% Similarity=0.557 Sum_probs=10.6
Q ss_pred CHHHHHHHHHHHh
Q psy9690 7 TGSERHEFLQTIL 19 (111)
Q Consensus 7 T~eER~a~L~~LL 19 (111)
|+.+|+.-|+.||
T Consensus 19 ~~~~Rr~RLr~ll 31 (31)
T 1mzw_B 19 GPAERRERLRNIL 31 (31)
T ss_dssp CHHHHHHHHHHHC
T ss_pred ChHHHHHHHHHhC
Confidence 6788998888875
Done!