RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9690
(111 letters)
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double
chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces
cerevisiae}
Length = 800
Score = 35.1 bits (81), Expect = 0.002
Identities = 7/60 (11%), Positives = 19/60 (31%)
Query: 3 DQKSTGSERHEFLQTILHQDDEEEEENEVPDDETVNQLIARTEDELTLFQKMDAERRKGE 62
+ E L+ + + +D ++ ++ ED +T ++ E
Sbjct: 718 KNEPNAGELSAILKFGAGNMFTATDNQKKLEDLNLDDVLNHAEDHVTTPDLGESHLGGEE 777
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 27.7 bits (61), Expect = 0.84
Identities = 19/123 (15%), Positives = 39/123 (31%), Gaps = 30/123 (24%)
Query: 13 EFLQTILHQDD--------EEEEENEVPDDETV-------NQLIARTEDELT---LFQKM 54
EF L +D +E + + + + + R D+ + LF+ +
Sbjct: 90 EFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAV 149
Query: 55 DAERRK--------GETKPRLVEIKEL---PDWMVKD-DDEVENSMYEEEREREKEEALM 102
+ G T E+++L +V D ++ E R E +
Sbjct: 150 GEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVF 209
Query: 103 GRG 105
+G
Sbjct: 210 TQG 212
Score = 27.3 bits (60), Expect = 1.2
Identities = 4/33 (12%), Positives = 14/33 (42%), Gaps = 3/33 (9%)
Query: 11 RHEFLQTILHQDDEEEEENEVPDDETVNQLIAR 43
+ +F + + + ++E T +L+ +
Sbjct: 34 QEQFNKILPEPTEGFAADDE---PTTPAELVGK 63
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 27.4 bits (60), Expect = 0.85
Identities = 12/47 (25%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Query: 52 QKMDAERRKGETKPRLVEIKELPDWMVKDDDEVENSMYEEEREREKE 98
Q++DA + E + R K+L +W + ++VE + R +K
Sbjct: 99 QELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNK-INNRIADKA 144
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent
kinase. protein/protein complex, transferase; 2.50A
{Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1
Length = 252
Score = 26.3 bits (58), Expect = 2.1
Identities = 6/34 (17%), Positives = 15/34 (44%)
Query: 69 EIKELPDWMVKDDDEVENSMYEEEREREKEEALM 102
E + D + ++++ +Y ERE + +
Sbjct: 5 EFQGFLDSSLLNEEDCRQMIYRSEREHDARMVGV 38
>1m22_A Peptide amidase, PAM; eleven-stranded beta sheet, covered double
layers of alpha helices on TOP and bottom, hydrolase;
HET: EPE; 1.40A {Stenotrophomonas maltophilia} SCOP:
c.117.1.1 PDB: 1m21_A*
Length = 503
Score = 25.6 bits (57), Expect = 4.5
Identities = 9/32 (28%), Positives = 13/32 (40%)
Query: 36 TVNQLIARTEDELTLFQKMDAERRKGETKPRL 67
+ +I D L + D ERR G + L
Sbjct: 47 RLRAVIELNPDALKEAAERDRERRDGRLRGPL 78
>3b7k_A Acyl-coenzyme A thioesterase 12; hotdog fold, structural genomics,
structural genomics consor SGC, fatty acid metabolism,
hydrolase; HET: COA; 2.70A {Homo sapiens}
Length = 333
Score = 25.1 bits (55), Expect = 5.3
Identities = 9/65 (13%), Positives = 18/65 (27%), Gaps = 2/65 (3%)
Query: 37 VNQLIARTEDELTLFQKMDA--ERRKGETKPRLVEIKELPDWMVKDDDEVENSMYEEERE 94
+ + TE + + R +KE + DE E ++
Sbjct: 140 LKPVTLLTEQDHVEHNLAAERRKVRLQHEDTFNNLMKESSKFDDLIFDEEEGAVSTRGTS 199
Query: 95 REKEE 99
+ E
Sbjct: 200 VQSIE 204
>3jtw_A Dihydrofolate reductase; YP_805003.1, structural GE joint center
for structural genomics, JCSG, protein structu
initiative; 1.90A {Pediococcus pentosaceus atcc 25745}
Length = 178
Score = 24.9 bits (55), Expect = 6.6
Identities = 8/32 (25%), Positives = 16/32 (50%)
Query: 75 DWMVKDDDEVENSMYEEEREREKEEALMGRGS 106
DW+ K+ E+ E+ + + +MGR +
Sbjct: 26 DWLEKNVHGTESDDSYEKMYSKIDTVIMGRTT 57
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP,
cyclic peptide, membrane protein; 3.80A {Mus musculus}
PDB: 3g61_A* 3g60_A*
Length = 1284
Score = 25.0 bits (55), Expect = 7.1
Identities = 9/44 (20%), Positives = 18/44 (40%), Gaps = 10/44 (22%)
Query: 11 RHEFLQTILHQDDEEEEENEVP--DDETVNQLIARTEDELTLFQ 52
R +F I++Q+ + D V +L R D+++
Sbjct: 144 RQKFFHAIMNQE--------IGWFDVHDVGELNTRLTDDVSKIN 179
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 24.5 bits (52), Expect = 7.2
Identities = 7/33 (21%), Positives = 13/33 (39%), Gaps = 9/33 (27%)
Query: 39 QLIARTEDELTLFQKMDAERRKGETKPRLVEIK 71
Q + + + L L+ ++ P L IK
Sbjct: 20 QALKKLQASLKLYAD--------DSAPALA-IK 43
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA
polymerase, translation, transferase-RNA complex; HET:
GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A*
3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G*
1efu_B
Length = 1289
Score = 24.9 bits (54), Expect = 8.7
Identities = 10/44 (22%), Positives = 15/44 (34%)
Query: 33 DDETVNQLIARTEDELTLFQKMDAERRKGETKPRLVEIKELPDW 76
+D+T+NQ A +D L E+ P W
Sbjct: 946 NDQTINQRRAHEGSVTNNLATVDLSAASDSISLALCELLLPPGW 989
>1czp_A Ferredoxin I; [2Fe-2S] protein, crystal reduced with dithionite,
electron; 1.17A {Nostoc SP} SCOP: d.15.4.1 PDB: 1ewy_C*
1fxa_A 1qt9_A 1qog_A 1j7c_A 1j7b_A 1qof_A 1qob_A 1j7a_A
1qoa_A 1rfk_A 3p63_A 4fxc_A 3ab5_A 1roe_A 2cjn_A 2cjo_A
1off_A 1dox_A 1doy_A ...
Length = 98
Score = 23.8 bits (52), Expect = 9.4
Identities = 8/21 (38%), Positives = 15/21 (71%)
Query: 17 TILHQDDEEEEENEVPDDETV 37
T++++ + + E EVPDDE +
Sbjct: 6 TLINEAEGTKHEIEVPDDEYI 26
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics,
PSI, protein structure INI southeast collaboratory for
structural genomics; 1.51A {Pyrococcus furiosus} SCOP:
d.15.3.1
Length = 98
Score = 23.8 bits (52), Expect = 9.4
Identities = 15/63 (23%), Positives = 24/63 (38%), Gaps = 3/63 (4%)
Query: 25 EEEENEVPDDETVNQLIARTEDELTLFQKMDAERRKGETKPRLVEI-KELPDW--MVKDD 81
+EEE E+P+ V LI + F++ E + + W +KD
Sbjct: 27 DEEEIELPEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVSWDEELKDG 86
Query: 82 DEV 84
D V
Sbjct: 87 DVV 89
>1frd_A Heterocyst [2Fe-2S] ferredoxin; electron transport; 1.70A {Nostoc
SP} SCOP: d.15.4.1
Length = 98
Score = 23.8 bits (52), Expect = 9.9
Identities = 2/21 (9%), Positives = 12/21 (57%)
Query: 17 TILHQDDEEEEENEVPDDETV 37
++++ + + E+ ++ T+
Sbjct: 6 RLINKKQDIDTTIEIDEETTI 26
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.307 0.127 0.341
Gapped
Lambda K H
0.267 0.0439 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,698,405
Number of extensions: 95709
Number of successful extensions: 242
Number of sequences better than 10.0: 1
Number of HSP's gapped: 236
Number of HSP's successfully gapped: 51
Length of query: 111
Length of database: 6,701,793
Length adjustment: 75
Effective length of query: 36
Effective length of database: 4,607,718
Effective search space: 165877848
Effective search space used: 165877848
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 51 (24.2 bits)