BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9692
(142 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1U0E|A Chain A, Crystal Structure Of Mouse Phosphoglucose Isomerase
pdb|1U0E|B Chain B, Crystal Structure Of Mouse Phosphoglucose Isomerase
pdb|1U0F|A Chain A, Crystal Structure Of Mouse Phosphoglucose Isomerase In
Complex With Glucose 6-Phosphate
pdb|1U0F|B Chain B, Crystal Structure Of Mouse Phosphoglucose Isomerase In
Complex With Glucose 6-Phosphate
pdb|1U0G|A Chain A, Crystal Structure Of Mouse Phosphoglucose Isomerase In
Complex With Erythrose 4-Phosphate
pdb|1U0G|B Chain B, Crystal Structure Of Mouse Phosphoglucose Isomerase In
Complex With Erythrose 4-Phosphate
Length = 564
Score = 29.3 bits (64), Expect = 0.88, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 22/43 (51%)
Query: 4 NKIHETVETINSLKTNREFFLSFAKDPQQFINKWIISQTRDLK 46
+K T ETI + +T +E+FL AKDP ++ T K
Sbjct: 210 SKTFTTQETITNAETAKEWFLEAAKDPSAVAKHFVALSTNTAK 252
>pdb|2CVP|A Chain A, Crystal Structure Of Mouse Amf
pdb|2CVP|B Chain B, Crystal Structure Of Mouse Amf
pdb|2CXN|A Chain A, Crystal Structure Of Mouse Amf PHOSPHATE COMPLEX
pdb|2CXN|B Chain B, Crystal Structure Of Mouse Amf PHOSPHATE COMPLEX
pdb|2CXO|A Chain A, Crystal Structure Of Mouse Amf E4P COMPLEX
pdb|2CXO|B Chain B, Crystal Structure Of Mouse Amf E4P COMPLEX
pdb|2CXP|A Chain A, Crystal Structure Of Mouse Amf / A5p Complex
pdb|2CXP|B Chain B, Crystal Structure Of Mouse Amf / A5p Complex
pdb|2CXQ|A Chain A, Crystal Structure Of Mouse Amf S6P COMPLEX
pdb|2CXQ|B Chain B, Crystal Structure Of Mouse Amf S6P COMPLEX
pdb|2CXR|A Chain A, Crystal Structure Of Mouse Amf 6PG COMPLEX
pdb|2CXR|B Chain B, Crystal Structure Of Mouse Amf 6PG COMPLEX
pdb|2CXS|A Chain A, Crystal Structure Of Mouse Amf / F6p Complex
pdb|2CXS|B Chain B, Crystal Structure Of Mouse Amf / F6p Complex
pdb|2CXT|A Chain A, Crystal Structure Of Mouse Amf F6P COMPLEX
pdb|2CXT|B Chain B, Crystal Structure Of Mouse Amf F6P COMPLEX
pdb|2CXU|A Chain A, Crystal Structure Of Mouse Amf / M6p Complex
pdb|2CXU|B Chain B, Crystal Structure Of Mouse Amf / M6p Complex
Length = 557
Score = 29.3 bits (64), Expect = 0.88, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 22/43 (51%)
Query: 4 NKIHETVETINSLKTNREFFLSFAKDPQQFINKWIISQTRDLK 46
+K T ETI + +T +E+FL AKDP ++ T K
Sbjct: 210 SKTFTTQETITNAETAKEWFLEAAKDPSAVAKHFVALSTNTAK 252
>pdb|1IAT|A Chain A, Crystal Structure Of Human Phosphoglucose
IsomeraseNEUROLEUKINAUTOCRINE MOTILITY FACTORMATURATION
FACTOR
Length = 557
Score = 28.9 bits (63), Expect = 0.95, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 22/43 (51%)
Query: 4 NKIHETVETINSLKTNREFFLSFAKDPQQFINKWIISQTRDLK 46
+K T ETI + +T +E+FL AKDP ++ T K
Sbjct: 209 SKTFTTQETITNAETAKEWFLQAAKDPSAVAKHFVALSTNTTK 251
>pdb|1JLH|A Chain A, Human Glucose-6-Phosphate Isomerase
pdb|1JLH|B Chain B, Human Glucose-6-Phosphate Isomerase
pdb|1JLH|C Chain C, Human Glucose-6-Phosphate Isomerase
pdb|1JLH|D Chain D, Human Glucose-6-Phosphate Isomerase
Length = 558
Score = 28.9 bits (63), Expect = 0.95, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 22/43 (51%)
Query: 4 NKIHETVETINSLKTNREFFLSFAKDPQQFINKWIISQTRDLK 46
+K T ETI + +T +E+FL AKDP ++ T K
Sbjct: 210 SKTFTTQETITNAETAKEWFLQAAKDPSAVAKHFVALSTNTTK 252
>pdb|1IRI|A Chain A, Crystal Structure Of Human Autocrine Motility Factor
Complexed With An Inhibitor
pdb|1IRI|B Chain B, Crystal Structure Of Human Autocrine Motility Factor
Complexed With An Inhibitor
pdb|1IRI|C Chain C, Crystal Structure Of Human Autocrine Motility Factor
Complexed With An Inhibitor
pdb|1IRI|D Chain D, Crystal Structure Of Human Autocrine Motility Factor
Complexed With An Inhibitor
pdb|1JIQ|A Chain A, Crystal Structure Of Human Autocrine Motility Factor
pdb|1JIQ|B Chain B, Crystal Structure Of Human Autocrine Motility Factor
pdb|1JIQ|C Chain C, Crystal Structure Of Human Autocrine Motility Factor
pdb|1JIQ|D Chain D, Crystal Structure Of Human Autocrine Motility Factor
pdb|1NUH|A Chain A, The Crystal Structure Of Human Phosphoglucose Isomerase
Complexed With 5-Phosphoarabinonate
Length = 558
Score = 28.9 bits (63), Expect = 0.95, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 22/43 (51%)
Query: 4 NKIHETVETINSLKTNREFFLSFAKDPQQFINKWIISQTRDLK 46
+K T ETI + +T +E+FL AKDP ++ T K
Sbjct: 210 SKTFTTQETITNAETAKEWFLQAAKDPSAVAKHFVALSTNTTK 252
>pdb|1GZD|A Chain A, Crystal Structure Of Pig Phosphoglucose Isomerase
pdb|1GZV|A Chain A, The Crystal Structure Of Phosphoglucose Isomerase From Pig
Muscle Complexed With 5-Phosphoarabinonate
Length = 557
Score = 28.9 bits (63), Expect = 1.0, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 22/43 (51%)
Query: 4 NKIHETVETINSLKTNREFFLSFAKDPQQFINKWIISQTRDLK 46
+K T ETI + +T +E+FL AKDP ++ T K
Sbjct: 209 SKTFTTQETITNAETAKEWFLQSAKDPSAVAKHFVALSTNTTK 251
>pdb|1G98|A Chain A, Crystal Structure Analysis Of Rabbit Phosphoglucose
Isomerase Complexed With 5-Phosphoarabinonate, A
Transition State Analogue
pdb|1G98|B Chain B, Crystal Structure Analysis Of Rabbit Phosphoglucose
Isomerase Complexed With 5-Phosphoarabinonate, A
Transition State Analogue
pdb|1HOX|A Chain A, Crystal Structure Of Rabbit Phosphoglucose Isomerase
Complexed With Fructose-6-Phosphate
pdb|1HOX|B Chain B, Crystal Structure Of Rabbit Phosphoglucose Isomerase
Complexed With Fructose-6-Phosphate
pdb|1HM5|A Chain A, Crystal Structure Analysis Of The Rabbit D-Glucose
6-Phosphate Isomerase (No Ligand Bound)
pdb|1HM5|B Chain B, Crystal Structure Analysis Of The Rabbit D-Glucose
6-Phosphate Isomerase (No Ligand Bound)
pdb|1XTB|A Chain A, Crystal Structure Of Rabbit Phosphoglucose Isomerase
Complexed With Sorbitol-6-Phosphate
pdb|1XTB|B Chain B, Crystal Structure Of Rabbit Phosphoglucose Isomerase
Complexed With Sorbitol-6-Phosphate
Length = 558
Score = 28.5 bits (62), Expect = 1.4, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 22/43 (51%)
Query: 4 NKIHETVETINSLKTNREFFLSFAKDPQQFINKWIISQTRDLK 46
+K T ETI + KT +++FL AKDP ++ T K
Sbjct: 210 SKTFTTQETITNAKTAKDWFLLSAKDPSTVAKHFVALSTNTAK 252
>pdb|1DQR|A Chain A, Crystal Structure Of Rabbit Phosphoglucose Isomerase, A
Glycolytic Enzyme That Moonlights As Neuroleukin,
Autocrine Motility Factor, And Differentiation Mediator
pdb|1DQR|B Chain B, Crystal Structure Of Rabbit Phosphoglucose Isomerase, A
Glycolytic Enzyme That Moonlights As Neuroleukin,
Autocrine Motility Factor, And Differentiation Mediator
pdb|1KOJ|A Chain A, Crystal Structure Of Rabbit Phosphoglucose Isomerase
Complexed With 5-Phospho-D-Arabinonohydroxamic Acid
pdb|1KOJ|B Chain B, Crystal Structure Of Rabbit Phosphoglucose Isomerase
Complexed With 5-Phospho-D-Arabinonohydroxamic Acid
Length = 557
Score = 28.5 bits (62), Expect = 1.4, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 22/43 (51%)
Query: 4 NKIHETVETINSLKTNREFFLSFAKDPQQFINKWIISQTRDLK 46
+K T ETI + KT +++FL AKDP ++ T K
Sbjct: 209 SKTFTTQETITNAKTAKDWFLLSAKDPSTVAKHFVALSTNTAK 251
>pdb|1N8T|A Chain A, The Crystal Structure Of Phosphoglucose Isomerase From
Rabbit Muscle
pdb|1N8T|B Chain B, The Crystal Structure Of Phosphoglucose Isomerase From
Rabbit Muscle
Length = 557
Score = 26.9 bits (58), Expect = 4.2, Method: Composition-based stats.
Identities = 14/43 (32%), Positives = 22/43 (51%)
Query: 4 NKIHETVETINSLKTNREFFLSFAKDPQQFINKWIISQTRDLK 46
+K T ETI + +T +++FL AKDP ++ T K
Sbjct: 209 SKTFTTQETITNAETAKDWFLLSAKDPSTVAKHFVALSTNTAK 251
>pdb|1ADJ|A Chain A, Histidyl-Trna Synthetase In Complex With Histidine
pdb|1ADJ|B Chain B, Histidyl-Trna Synthetase In Complex With Histidine
pdb|1ADJ|C Chain C, Histidyl-Trna Synthetase In Complex With Histidine
pdb|1ADJ|D Chain D, Histidyl-Trna Synthetase In Complex With Histidine
pdb|1ADY|A Chain A, Histidyl-Trna Synthetase In Complex With
Histidyl-Adenylate
pdb|1ADY|B Chain B, Histidyl-Trna Synthetase In Complex With
Histidyl-Adenylate
pdb|1ADY|C Chain C, Histidyl-Trna Synthetase In Complex With
Histidyl-Adenylate
pdb|1ADY|D Chain D, Histidyl-Trna Synthetase In Complex With
Histidyl-Adenylate
pdb|1H4V|B Chain B, Histidyl-Trna Synthetase From Thermus Thermophilus (Ligand
Free)
Length = 421
Score = 26.2 bits (56), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 12/22 (54%)
Query: 57 EERRSDFYYQPWAEEAVCRYFY 78
EE+ D Y P EEAV FY
Sbjct: 325 EEKGPDLYLIPLTEEAVAEAFY 346
Score = 26.2 bits (56), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 12/22 (54%)
Query: 107 EERRSDFYYQPWAEEAVCRYFY 128
EE+ D Y P EEAV FY
Sbjct: 325 EEKGPDLYLIPLTEEAVAEAFY 346
>pdb|2P4Q|A Chain A, Crystal Structure Analysis Of Gnd1 In Saccharomyces
Cerevisiae
Length = 497
Score = 25.8 bits (55), Expect = 7.9, Method: Composition-based stats.
Identities = 14/45 (31%), Positives = 23/45 (51%)
Query: 18 TNREFFLSFAKDPQQFINKWIISQTRDLKTMTDVVGNPEEERRSD 62
T++E FAK ++ +++ TRD+ DV G P E+ D
Sbjct: 218 TDKEISDVFAKWNNGVLDSFLVEITRDILKFDDVDGKPLVEKIMD 262
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.131 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,156,913
Number of Sequences: 62578
Number of extensions: 155284
Number of successful extensions: 386
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 370
Number of HSP's gapped (non-prelim): 17
length of query: 142
length of database: 14,973,337
effective HSP length: 89
effective length of query: 53
effective length of database: 9,403,895
effective search space: 498406435
effective search space used: 498406435
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 46 (22.3 bits)