BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9692
(142 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q96GM5|SMRD1_HUMAN SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily D member 1 OS=Homo sapiens
GN=SMARCD1 PE=1 SV=2
Length = 515
Score = 166 bits (420), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 76/97 (78%), Positives = 86/97 (88%)
Query: 1 SLDNKIHETVETINSLKTNREFFLSFAKDPQQFINKWIISQTRDLKTMTDVVGNPEEERR 60
+LDNKIHET+ETIN LKT REF LSFA+DPQ FIN W+ SQ RDLKTMTDVVGNPEEERR
Sbjct: 419 TLDNKIHETIETINQLKTQREFMLSFARDPQGFINDWLQSQCRDLKTMTDVVGNPEEERR 478
Query: 61 SDFYYQPWAEEAVCRYFYSKVQQKRAELEQALVYQFT 97
++FY+QPWA+EAVCRYFYSKVQQ+R ELEQAL + T
Sbjct: 479 AEFYFQPWAQEAVCRYFYSKVQQRRQELEQALGIRNT 515
>sp|Q61466|SMRD1_MOUSE SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily D member 1 OS=Mus musculus
GN=Smarcd1 PE=1 SV=3
Length = 515
Score = 166 bits (420), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 76/97 (78%), Positives = 86/97 (88%)
Query: 1 SLDNKIHETVETINSLKTNREFFLSFAKDPQQFINKWIISQTRDLKTMTDVVGNPEEERR 60
+LDNKIHET+ETIN LKT REF LSFA+DPQ FIN W+ SQ RDLKTMTDVVGNPEEERR
Sbjct: 419 TLDNKIHETIETINQLKTQREFMLSFARDPQGFINDWLQSQCRDLKTMTDVVGNPEEERR 478
Query: 61 SDFYYQPWAEEAVCRYFYSKVQQKRAELEQALVYQFT 97
++FY+QPWA+EAVCRYFYSKVQQ+R ELEQAL + T
Sbjct: 479 AEFYFQPWAQEAVCRYFYSKVQQRRQELEQALGIRNT 515
>sp|Q2TBN1|SMRD1_BOVIN SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily D member 1 OS=Bos taurus GN=SMARCD1
PE=2 SV=1
Length = 515
Score = 160 bits (406), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 74/97 (76%), Positives = 84/97 (86%)
Query: 1 SLDNKIHETVETINSLKTNREFFLSFAKDPQQFINKWIISQTRDLKTMTDVVGNPEEERR 60
+LDNKIHET+ETIN LKT REF LSFA+DPQ FIN W+ SQ RDLK MTDVVGN EEERR
Sbjct: 419 TLDNKIHETIETINQLKTQREFMLSFARDPQGFINDWLQSQCRDLKVMTDVVGNSEEERR 478
Query: 61 SDFYYQPWAEEAVCRYFYSKVQQKRAELEQALVYQFT 97
++FY+QPWA+EAVCRYFYSKVQQ+R ELEQAL + T
Sbjct: 479 AEFYFQPWAQEAVCRYFYSKVQQRRQELEQALGIRNT 515
>sp|Q6P9Z1|SMRD3_MOUSE SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily D member 3 OS=Mus musculus
GN=Smarcd3 PE=1 SV=2
Length = 483
Score = 139 bits (351), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 60/97 (61%), Positives = 81/97 (83%)
Query: 1 SLDNKIHETVETINSLKTNREFFLSFAKDPQQFINKWIISQTRDLKTMTDVVGNPEEERR 60
+LD+KIHET+E+IN LK R+F LSF++DP+ ++ + SQ+RDLK MTDV GNPEEERR
Sbjct: 387 ALDSKIHETIESINQLKIQRDFMLSFSRDPKGYVQDLLRSQSRDLKVMTDVAGNPEEERR 446
Query: 61 SDFYYQPWAEEAVCRYFYSKVQQKRAELEQALVYQFT 97
++FY+QPW++EAV RYFY K+QQ+R ELEQ+LV + T
Sbjct: 447 AEFYHQPWSQEAVSRYFYCKIQQRRQELEQSLVVRNT 483
>sp|Q6STE5|SMRD3_HUMAN SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily D member 3 OS=Homo sapiens
GN=SMARCD3 PE=1 SV=1
Length = 483
Score = 139 bits (351), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 60/97 (61%), Positives = 81/97 (83%)
Query: 1 SLDNKIHETVETINSLKTNREFFLSFAKDPQQFINKWIISQTRDLKTMTDVVGNPEEERR 60
+LD+KIHET+E+IN LK R+F LSF++DP+ ++ + SQ+RDLK MTDV GNPEEERR
Sbjct: 387 ALDSKIHETIESINQLKIQRDFMLSFSRDPKGYVQDLLRSQSRDLKVMTDVAGNPEEERR 446
Query: 61 SDFYYQPWAEEAVCRYFYSKVQQKRAELEQALVYQFT 97
++FY+QPW++EAV RYFY K+QQ+R ELEQ+LV + T
Sbjct: 447 AEFYHQPWSQEAVSRYFYCKIQQRRQELEQSLVVRNT 483
>sp|Q99JR8|SMRD2_MOUSE SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily D member 2 OS=Mus musculus
GN=Smarcd2 PE=2 SV=2
Length = 531
Score = 137 bits (345), Expect = 2e-32, Method: Composition-based stats.
Identities = 62/97 (63%), Positives = 79/97 (81%)
Query: 1 SLDNKIHETVETINSLKTNREFFLSFAKDPQQFINKWIISQTRDLKTMTDVVGNPEEERR 60
SLD KIHET+E+IN LKT R+F LSF+ +PQ FI +W+ SQ RDLK +TDV+GNPEEERR
Sbjct: 435 SLDVKIHETIESINQLKTQRDFMLSFSTEPQDFIQEWLRSQRRDLKIITDVIGNPEEERR 494
Query: 61 SDFYYQPWAEEAVCRYFYSKVQQKRAELEQALVYQFT 97
+ FY+QPWA+EAV R+ ++KVQQ+R ELEQ L + T
Sbjct: 495 AAFYHQPWAQEAVGRHIFAKVQQRRQELEQVLGIRLT 531
>sp|Q92925|SMRD2_HUMAN SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily D member 2 OS=Homo sapiens
GN=SMARCD2 PE=1 SV=3
Length = 531
Score = 137 bits (344), Expect = 2e-32, Method: Composition-based stats.
Identities = 63/97 (64%), Positives = 79/97 (81%)
Query: 1 SLDNKIHETVETINSLKTNREFFLSFAKDPQQFINKWIISQTRDLKTMTDVVGNPEEERR 60
SLD KIHET+E+IN LKT R+F LSF+ DPQ FI +W+ SQ RDLK +TDV+GNPEEERR
Sbjct: 435 SLDVKIHETIESINQLKTQRDFMLSFSTDPQDFIQEWLRSQRRDLKIITDVIGNPEEERR 494
Query: 61 SDFYYQPWAEEAVCRYFYSKVQQKRAELEQALVYQFT 97
+ FY+QPWA+EAV R+ ++KVQQ+R ELEQ L + T
Sbjct: 495 AAFYHQPWAQEAVGRHIFAKVQQRRQELEQVLGIRLT 531
>sp|O54772|SMRD2_RAT SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily D member 2 OS=Rattus norvegicus
GN=Smarcd2 PE=2 SV=3
Length = 531
Score = 137 bits (344), Expect = 3e-32, Method: Composition-based stats.
Identities = 62/97 (63%), Positives = 79/97 (81%)
Query: 1 SLDNKIHETVETINSLKTNREFFLSFAKDPQQFINKWIISQTRDLKTMTDVVGNPEEERR 60
SLD KIHET+E+IN LKT R+F LSF+ +PQ FI +W+ SQ RDLK +TDV+GNPEEERR
Sbjct: 435 SLDVKIHETIESINQLKTQRDFMLSFSTEPQDFIQEWLRSQRRDLKIITDVIGNPEEERR 494
Query: 61 SDFYYQPWAEEAVCRYFYSKVQQKRAELEQALVYQFT 97
+ FY+QPWA+EAV R+ ++KVQQ+R ELEQ L + T
Sbjct: 495 AAFYHQPWAQEAVGRHIFAKVQQRRQELEQVLGIRLT 531
>sp|E1BJD1|SMRD2_BOVIN SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily D member 2 OS=Bos taurus GN=SMARCD2
PE=3 SV=1
Length = 531
Score = 135 bits (340), Expect = 7e-32, Method: Composition-based stats.
Identities = 63/97 (64%), Positives = 79/97 (81%)
Query: 1 SLDNKIHETVETINSLKTNREFFLSFAKDPQQFINKWIISQTRDLKTMTDVVGNPEEERR 60
SLD KIHET+E+IN LKT R+F LSF+ DPQ FI +W+ SQ RDLK +TDV+GNPEEERR
Sbjct: 435 SLDVKIHETIESINQLKTQRDFMLSFSTDPQDFIQEWLRSQRRDLKIITDVIGNPEEERR 494
Query: 61 SDFYYQPWAEEAVCRYFYSKVQQKRAELEQALVYQFT 97
+ FY+QPWA+EAV R+ ++KVQQ+R ELEQ L + T
Sbjct: 495 AAFYHQPWAQEAVGRHIFAKVQQRRQELEQVLGIRLT 531
>sp|Q9FMT4|SNF12_ARATH SWI/SNF complex component SNF12 homolog OS=Arabidopsis thaliana
GN=At5g14170 PE=1 SV=1
Length = 534
Score = 69.3 bits (168), Expect = 6e-12, Method: Composition-based stats.
Identities = 34/76 (44%), Positives = 46/76 (60%), Gaps = 1/76 (1%)
Query: 3 DNKIHETVETINSLKTNREFFLSFAKDPQQFINKWIISQTRDLKTMT-DVVGNPEEERRS 61
D I + I+ + R FFL F++ P +FIN I SQ++DLK + + N E ERRS
Sbjct: 445 DEAICAAIRKIHEHRRRRAFFLGFSQSPVEFINALIESQSKDLKVVAGEASRNAERERRS 504
Query: 62 DFYYQPWAEEAVCRYF 77
DF+ QPW E+AV RY
Sbjct: 505 DFFNQPWVEDAVIRYL 520
>sp|Q9P7S3|SSR3_SCHPO SWI/SNF and RSC complexes subunit ssr3 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=ssr3 PE=1 SV=1
Length = 425
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
Query: 1 SLDNKIHETVETINSLKTNREFFLSFAKDPQQFINKWIISQTRDLKTMTDVVG-NPEEER 59
S+D+K+ E ++ I ++ +F F++ P +FIN+WI SQ+RDL+ + D N E+R
Sbjct: 330 SIDDKLTELIQAITYSQSKYDFMKKFSESPIEFINEWIESQSRDLEIVLDGTNMNYAEKR 389
Query: 60 RSDFYYQPWAEEAVCRYF 77
+D+Y QPW E+ Y
Sbjct: 390 SADYYQQPWVHESAFHYL 407
>sp|Q556Z0|SNF12_DICDI SWI/SNF complex component SNF12 homolog OS=Dictyostelium discoideum
GN=snf12-1 PE=3 SV=1
Length = 456
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
Query: 2 LDNKIHETVETINSLKTNREFFLSFAKDPQQFINKWIISQTRDLKTMTDVVGNP-EEERR 60
L+++I+ ++ + K REF + DP F+N + +D + EEER
Sbjct: 357 LNDEINHHIQKVYQHKRKREFMEKLSSDPLGFLNDTTANLVKDFQVSKSTTSTGFEEERH 416
Query: 61 SDFYYQPWAEEAVCRYF 77
+ FYYQP EE V Y
Sbjct: 417 ASFYYQPMTEELVKNYL 433
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 14/22 (63%)
Query: 106 EEERRSDFYYQPWAEEAVCRYF 127
EEER + FYYQP EE V Y
Sbjct: 412 EEERHASFYYQPMTEELVKNYL 433
>sp|P24836|VE6_HPV56 Protein E6 OS=Human papillomavirus type 56 GN=E6 PE=3 SV=1
Length = 155
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 40/83 (48%), Gaps = 8/83 (9%)
Query: 53 GNPEEERRSDFYYQPWAEEAVCRYFYSKVQQKRAELEQALVYQFTMTDVVGNPEEERRSD 112
NP+E RS + E + S V K+ EL +A VY F T++ + R D
Sbjct: 6 NNPQERPRSLHHLSEVLEIPLIDLRLSCVYCKK-ELTRAEVYNFACTEL----KLVYRDD 60
Query: 113 FYYQPWAEEAVCRYFYSKVQQKR 135
F P+A VC FYSKV++ R
Sbjct: 61 F---PYAVCRVCLLFYSKVRKYR 80
>sp|Q6P6V0|G6PI_RAT Glucose-6-phosphate isomerase OS=Rattus norvegicus GN=Gpi PE=1 SV=1
Length = 558
Score = 30.0 bits (66), Expect = 4.4, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
Query: 4 NKIHETVETINSLKTNREFFLSFAKDPQQFINKWIISQTRDLKTMTDVVGNPEEERRSDF 63
+K T ETI + +T +E+FL AKDP ++ L T TD V + ++ F
Sbjct: 210 SKTFTTQETITNAETAKEWFLQAAKDPSAVAKHFVA-----LSTNTDKVKEFGIDPKNMF 264
Query: 64 YYQPW 68
+ W
Sbjct: 265 EFWDW 269
>sp|Q5R4E3|G6PI_PONAB Glucose-6-phosphate isomerase OS=Pongo abelii GN=GPI PE=2 SV=3
Length = 558
Score = 29.3 bits (64), Expect = 8.8, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 22/43 (51%)
Query: 4 NKIHETVETINSLKTNREFFLSFAKDPQQFINKWIISQTRDLK 46
+K T ETI + +T +E+FL AKDP ++ T K
Sbjct: 210 SKTFTTQETITNAETAKEWFLQTAKDPSAVAKHFVALSTNTTK 252
>sp|P53628|SNF12_YEAST Transcription regulatory protein SNF12 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=SNF12 PE=1 SV=1
Length = 566
Score = 28.9 bits (63), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
Query: 22 FFLSFAKDPQQFINKWIISQTRDLKTMTDVVG-NPEEERRSDFYYQPWAEEAVCR 75
FF ++DP + +N+ I S + LK ++ G N + RR++FY + EA+ R
Sbjct: 503 FFKKISEDPVKALNECIASTSNALKVLSGDEGYNEDMVRRANFYKE---NEAMLR 554
>sp|P06745|G6PI_MOUSE Glucose-6-phosphate isomerase OS=Mus musculus GN=Gpi PE=1 SV=4
Length = 558
Score = 28.9 bits (63), Expect = 9.2, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 22/43 (51%)
Query: 4 NKIHETVETINSLKTNREFFLSFAKDPQQFINKWIISQTRDLK 46
+K T ETI + +T +E+FL AKDP ++ T K
Sbjct: 210 SKTFTTQETITNAETAKEWFLEAAKDPSAVAKHFVALSTNTAK 252
>sp|Q4R591|G6PI_MACFA Glucose-6-phosphate isomerase OS=Macaca fascicularis GN=GPI PE=2
SV=3
Length = 558
Score = 28.9 bits (63), Expect = 9.5, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 22/43 (51%)
Query: 4 NKIHETVETINSLKTNREFFLSFAKDPQQFINKWIISQTRDLK 46
+K T ETI + +T +E+FL AKDP ++ T K
Sbjct: 210 SKTFTTQETITNAETAKEWFLQAAKDPSAVAKHFVALSTNTTK 252
>sp|P06744|G6PI_HUMAN Glucose-6-phosphate isomerase OS=Homo sapiens GN=GPI PE=1 SV=4
Length = 558
Score = 28.9 bits (63), Expect = 9.6, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 22/43 (51%)
Query: 4 NKIHETVETINSLKTNREFFLSFAKDPQQFINKWIISQTRDLK 46
+K T ETI + +T +E+FL AKDP ++ T K
Sbjct: 210 SKTFTTQETITNAETAKEWFLQAAKDPSAVAKHFVALSTNTTK 252
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.131 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,518,394
Number of Sequences: 539616
Number of extensions: 1928355
Number of successful extensions: 4584
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 4546
Number of HSP's gapped (non-prelim): 38
length of query: 142
length of database: 191,569,459
effective HSP length: 105
effective length of query: 37
effective length of database: 134,909,779
effective search space: 4991661823
effective search space used: 4991661823
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)