Query psy9692
Match_columns 142
No_of_seqs 163 out of 227
Neff 5.6
Searched_HMMs 46136
Date Fri Aug 16 17:11:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9692.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9692hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2570|consensus 99.9 1.4E-28 3.1E-33 211.5 7.1 86 1-86 333-419 (420)
2 KOG2570|consensus 99.5 5.7E-15 1.2E-19 127.8 4.4 61 69-137 359-420 (420)
3 PF05186 Dpy-30: Dpy-30 motif; 53.1 13 0.00027 22.6 2.0 27 9-41 14-40 (42)
4 PF12451 VPS11_C: Vacuolar pro 40.3 60 0.0013 20.2 3.7 35 4-38 5-42 (49)
5 smart00545 JmjN Small domain f 29.9 74 0.0016 19.3 2.8 16 24-41 10-25 (42)
6 PF13376 OmdA: Bacteriocin-pro 29.9 96 0.0021 19.8 3.6 33 8-40 9-41 (63)
7 COG4921 Uncharacterized protei 29.6 28 0.00061 26.2 1.1 29 110-139 78-107 (131)
8 KOG2715|consensus 29.6 52 0.0011 26.5 2.6 94 26-141 39-147 (210)
9 PF12731 Mating_N: Mating-type 26.0 1.6E+02 0.0034 20.6 4.3 32 3-39 11-45 (95)
10 PF14050 Nudc_N: N-terminal co 24.9 41 0.00088 22.1 1.1 8 108-115 29-36 (62)
11 PF02180 BH4: Bcl-2 homology r 22.9 82 0.0018 17.6 1.9 15 120-134 6-20 (27)
12 PF12772 GHBP: Growth hormone 22.7 50 0.0011 28.3 1.5 26 84-120 3-29 (295)
13 PF15167 DUF4581: Domain of un 22.6 39 0.00084 25.3 0.7 16 104-119 21-36 (128)
14 PF05589 DUF768: Protein of un 22.0 56 0.0012 21.7 1.3 15 26-40 1-15 (64)
15 PLN02264 lipoxygenase 21.2 2.3E+02 0.005 28.1 5.7 74 23-96 803-881 (919)
16 smart00801 dDENN Domain always 20.7 1.1E+02 0.0023 19.5 2.5 26 19-44 38-63 (69)
17 PF09974 DUF2209: Uncharacteri 20.3 49 0.0011 25.0 0.9 15 110-124 76-91 (128)
No 1
>KOG2570|consensus
Probab=99.95 E-value=1.4e-28 Score=211.54 Aligned_cols=86 Identities=59% Similarity=1.034 Sum_probs=82.9
Q ss_pred ChhHHHHHHHHHHHhhhHHHHHHHHHhhCHHHHHHHHHHHHHhhHHHhhh-cCCCchhhhhccccCChhHHHHHHHHHHH
Q psy9692 1 SLDNKIHETVETINSLKTNREFFLSFAKDPQQFINKWIISQTRDLKTMTD-VVGNPEEERRSDFYYQPWAEEAVCRYFYS 79 (142)
Q Consensus 1 ~lD~~I~~~i~~i~~~k~rr~F~l~fs~dP~~FI~~wi~SQ~rDLk~~~~-~~~~~eeeRrsefy~~pwv~EAV~ryl~~ 79 (142)
+||++|+.+|++||+++.||+||++||+||++||++||.||++|||++.| .+||+|++|+++||.+||++|||+|||+.
T Consensus 333 alD~kI~~li~~ine~~~rr~Ff~~Fs~dPvefin~wi~Sq~~Dlkv~~gd~~~N~e~eRraefy~qpw~~eav~ry~~~ 412 (420)
T KOG2570|consen 333 ALDRKITELIQQINESKERRDFFLEFSKDPVEFINEWIESQSSDLKVLAGDVSGNPEEERRAEFYKQPWTDEAVSRYMFL 412 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhCHHHHHHHHHHhcchhhHHhhccccCCHHHHHHHHHHcCccHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999995 67899999999999999999999999999
Q ss_pred HHHHHHH
Q psy9692 80 KVQQKRA 86 (142)
Q Consensus 80 kv~q~r~ 86 (142)
|++++++
T Consensus 413 ~~~q~r~ 419 (420)
T KOG2570|consen 413 KVQQKRQ 419 (420)
T ss_pred HHhhccC
Confidence 9999865
No 2
>KOG2570|consensus
Probab=99.53 E-value=5.7e-15 Score=127.78 Aligned_cols=61 Identities=48% Similarity=0.897 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc-cccCChhhhhhhhccCCCcHHHHHHHHHHHHHHHHHHH
Q psy9692 69 AEEAVCRYFYSKVQQKRAELEQALVYQFTMT-DVVGNPEEERRSDFYYQPWAEEAVCRYFYSKVQQKRAE 137 (142)
Q Consensus 69 v~EAV~ryl~~kv~q~r~ele~~lg~~K~~~-~~~~~~E~eR~sefy~qpwv~eav~ry~~~k~~qk~~~ 137 (142)
..+.| .||+..+.++.++| |+|+ |.+||+|+||||+||+||||+|||+||++.|++|+|+|
T Consensus 359 s~dPv-efin~wi~Sq~~Dl-------kv~~gd~~~N~e~eRraefy~qpw~~eav~ry~~~~~~q~r~~ 420 (420)
T KOG2570|consen 359 SKDPV-EFINEWIESQSSDL-------KVLAGDVSGNPEEERRAEFYKQPWTDEAVSRYMFLKVQQKRQE 420 (420)
T ss_pred hhCHH-HHHHHHHHhcchhh-------HHhhccccCCHHHHHHHHHHcCccHHHHHHHHHHHHHhhccCC
Confidence 36667 78899999999999 4776 89999999999999999999999999999999999975
No 3
>PF05186 Dpy-30: Dpy-30 motif; InterPro: IPR007858 This motif is about 40 residues long and is probably formed of two alpha-helices. It is found in the Dpy-30 proteins, hence the motifs name. Dpy-30 from Caenorhabditis elegans is an essential component of dosage compensation machinery and loss of dpy-30 activity results in XX-specific lethality; in XO animals, Dpy-30 is required for developmental processes other than dosage compensation []. In yeast, the homologue of DPY-30, Saf19p, functions as part of the Set1 complex that is necessary for the methylation of histone H3 at lysine residue 4; Set1 is a key part of epigenetic developmental control []. There is also a human homologue of Dpy-30 []. This Dpy-30 region may be a dimerisation motif analogous that found in the cAMP-dependent protein kinase regulator, type II PKA, R subunit IPR003117 from INTERPRO.; PDB: 3G36_D.
Probab=53.09 E-value=13 Score=22.63 Aligned_cols=27 Identities=22% Similarity=0.599 Sum_probs=17.1
Q ss_pred HHHHHHhhhHHHHHHHHHhhCHHHHHHHHHHHH
Q psy9692 9 TVETINSLKTNREFFLSFAKDPQQFINKWIISQ 41 (142)
Q Consensus 9 ~i~~i~~~k~rr~F~l~fs~dP~~FI~~wi~SQ 41 (142)
+++.+.+....| =.||++|+-.||-..
T Consensus 14 L~~gL~~l~~~r------P~DPi~~La~~Ll~~ 40 (42)
T PF05186_consen 14 LTEGLAELAKER------PEDPIEFLAEYLLKH 40 (42)
T ss_dssp HHHHHHHHHHH--------SSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHC------CCChHHHHHHHHHHh
Confidence 344455444333 259999999999763
No 4
>PF12451 VPS11_C: Vacuolar protein sorting protein 11 C terminal; InterPro: IPR024763 Vps 11 is one of the evolutionarily conserved class C vacuolar protein sorting genes (c-vps: vps11, vps16, vps18, and vps33), whose products physically associate to form the c-vps protein complex required for vesicle docking and fusion. This entry represents the C-terminal domain of vps11.
Probab=40.31 E-value=60 Score=20.16 Aligned_cols=35 Identities=17% Similarity=0.294 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHhhhHHH-HHHHHH--hhCHHHHHHHHH
Q psy9692 4 NKIHETVETINSLKTNR-EFFLSF--AKDPQQFINKWI 38 (142)
Q Consensus 4 ~~I~~~i~~i~~~k~rr-~F~l~f--s~dP~~FI~~wi 38 (142)
+.|..+..+-.+.+.++ -|+..+ |.|+-.+|-+|+
T Consensus 5 ~~i~~~~r~q~~~~~~~d~F~~~L~~s~D~F~vIaeyf 42 (49)
T PF12451_consen 5 ETIREIRRAQEESADQHDLFFKQLEESEDRFSVIAEYF 42 (49)
T ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHhCCCCchhHHHHH
Confidence 45667777777777777 466666 777777787776
No 5
>smart00545 JmjN Small domain found in the jumonji family of transcription factors. To date, this domain always co-occurs with the JmjC domain (although the reverse is not true).
Probab=29.89 E-value=74 Score=19.30 Aligned_cols=16 Identities=50% Similarity=0.750 Sum_probs=11.0
Q ss_pred HHHhhCHHHHHHHHHHHH
Q psy9692 24 LSFAKDPQQFINKWIISQ 41 (142)
Q Consensus 24 l~fs~dP~~FI~~wi~SQ 41 (142)
..| .||.+||.+ |.++
T Consensus 10 eEF-~Dp~~yi~~-i~~~ 25 (42)
T smart00545 10 EEF-KDPLAYISK-IRPQ 25 (42)
T ss_pred HHH-HCHHHHHHH-HHHH
Confidence 345 599999976 5543
No 6
>PF13376 OmdA: Bacteriocin-protection, YdeI or OmpD-Associated
Probab=29.89 E-value=96 Score=19.77 Aligned_cols=33 Identities=21% Similarity=0.364 Sum_probs=28.2
Q ss_pred HHHHHHHhhhHHHHHHHHHhhCHHHHHHHHHHH
Q psy9692 8 ETVETINSLKTNREFFLSFAKDPQQFINKWIIS 40 (142)
Q Consensus 8 ~~i~~i~~~k~rr~F~l~fs~dP~~FI~~wi~S 40 (142)
++...|.....=..||.+|+..-+.-+-.||.+
T Consensus 9 dl~~aL~~~p~a~~~f~~l~~~~rr~~i~wi~~ 41 (63)
T PF13376_consen 9 DLEAALEANPEAKEFFESLTPSYRREYIRWINS 41 (63)
T ss_pred HHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHH
Confidence 466777788888899999999999888899987
No 7
>COG4921 Uncharacterized protein conserved in archaea [Function unknown]
Probab=29.63 E-value=28 Score=26.18 Aligned_cols=29 Identities=28% Similarity=0.416 Sum_probs=18.5
Q ss_pred hhhccCCC-cHHHHHHHHHHHHHHHHHHHHH
Q psy9692 110 RSDFYYQP-WAEEAVCRYFYSKVQQKRAELE 139 (142)
Q Consensus 110 ~sefy~qp-wv~eav~ry~~~k~~qk~~~~~ 139 (142)
+-|||++| |+.+|..--- -|.++.++|+|
T Consensus 78 ~Geffn~p~w~~sall~~~-fky~et~aEre 107 (131)
T COG4921 78 PGEFFNEPEWRVSALLGAP-FKYAETVAERE 107 (131)
T ss_pred ChhhcCCcHhHHHHHhcCc-ccchhhHHHHH
Confidence 57999999 8888875311 13455555554
No 8
>KOG2715|consensus
Probab=29.60 E-value=52 Score=26.52 Aligned_cols=94 Identities=23% Similarity=0.432 Sum_probs=48.0
Q ss_pred HhhCHHHHHHHHHHHHHhhHHHhhhcCCCchhhhhccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCh
Q psy9692 26 FAKDPQQFINKWIISQTRDLKTMTDVVGNPEEERRSDFYYQPWAEEAVCRYFYSKVQQKRAELEQALVYQFTMTDVVGNP 105 (142)
Q Consensus 26 fs~dP~~FI~~wi~SQ~rDLk~~~~~~~~~eeeRrsefy~~pwv~EAV~ryl~~kv~q~r~ele~~lg~~K~~~~~~~~~ 105 (142)
|..||-.|+... -+--.||-.-+|..|..--.|...| =-.|.+||.. -.| -+.+ +... |-.
T Consensus 39 l~rdp~sFl~rl-~q~~~~l~sdrDetGAYlIDRDP~~------FgpvLNylRh------gkl----vl~~-l~ee-GvL 99 (210)
T KOG2715|consen 39 LPRDPKSFLYRL-CQREKDLPSDRDETGAYLIDRDPFY------FGPVLNYLRH------GKL----VLNK-LSEE-GVL 99 (210)
T ss_pred cccCcHHHHHHH-HhcccCCCCCccccCceEeccCcch------HHHHHHHHhc------chh----hhhh-hhhh-ccc
Confidence 678898898644 4434444444443343333333333 3457788820 011 1112 2111 222
Q ss_pred hhhhhhhccCCC---------------cHHHHHHHHHHHHHHHHHHHHHhh
Q psy9692 106 EEERRSDFYYQP---------------WAEEAVCRYFYSKVQQKRAELEQA 141 (142)
Q Consensus 106 E~eR~sefy~qp---------------wv~eav~ry~~~k~~qk~~~~~~~ 141 (142)
| -|+||+-| .|..+-..++|+.++=.-.||-|.
T Consensus 100 ~---EAefyn~~~li~likd~i~dRd~~~tq~~~k~vyrvLqcqeeeltqm 147 (210)
T KOG2715|consen 100 E---EAEFYNDPSLIQLIKDRIQDRDAMVTQEADKFVYRVLQCQEEELTQM 147 (210)
T ss_pred h---hhhccCChHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHH
Confidence 3 27899999 444444466777777666666553
No 9
>PF12731 Mating_N: Mating-type protein beta 1; InterPro: IPR024333 This entry represents a group of homeodomain-containing transcription factor proteins involved in mating [].
Probab=25.99 E-value=1.6e+02 Score=20.61 Aligned_cols=32 Identities=19% Similarity=0.572 Sum_probs=22.8
Q ss_pred hHHHHHHHHHHHhhhHHHHHHHHHhhCH---HHHHHHHHH
Q psy9692 3 DNKIHETVETINSLKTNREFFLSFAKDP---QQFINKWII 39 (142)
Q Consensus 3 D~~I~~~i~~i~~~k~rr~F~l~fs~dP---~~FI~~wi~ 39 (142)
|..|...+..+ +.+||.+++.++ ..|...|-.
T Consensus 11 D~~I~~~L~~~-----e~~fl~sL~~g~~~L~~F~~~w~~ 45 (95)
T PF12731_consen 11 DADIRQALQAL-----EADFLSSLRGGSDALESFLSSWSS 45 (95)
T ss_pred HHHHHHHHHHH-----HHHHHHHHhCChHHHHHHHHHHHH
Confidence 56666666554 357999999999 567777744
No 10
>PF14050 Nudc_N: N-terminal conserved domain of Nudc.
Probab=24.88 E-value=41 Score=22.11 Aligned_cols=8 Identities=50% Similarity=1.107 Sum_probs=7.1
Q ss_pred hhhhhccC
Q psy9692 108 ERRSDFYY 115 (142)
Q Consensus 108 eR~sefy~ 115 (142)
.|+++||+
T Consensus 29 ~RkTDFy~ 36 (62)
T PF14050_consen 29 RRKTDFYH 36 (62)
T ss_pred hccCceee
Confidence 58999999
No 11
>PF02180 BH4: Bcl-2 homology region 4; InterPro: IPR003093 Apoptosis, or programmed cell death (PCD), is a common and evolutionarily conserved property of all metazoans []. In many biological processes, apoptosis is required to eliminate supernumerary or dangerous (such as pre-cancerous) cells and to promote normal development. Dysregulation of apoptosis can, therefore, contribute to the development of many major diseases including cancer, autoimmunity and neurodegenerative disorders. In most cases, proteins of the caspase family execute the genetic programme that leads to cell death. Bcl-2 proteins are central regulators of caspase activation, and play a key role in cell death by regulating the integrity of the mitochondrial and endoplasmic reticulum (ER) membranes []. At least 20 Bcl-2 proteins have been reported in mammals, and several others have been identified in viruses. Bcl-2 family proteins fall roughly into three subtypes, which either promote cell survival (anti-apoptotic) or trigger cell death (pro-apoptotic). All members contain at least one of four conserved motifs, termed Bcl-2 Homology (BH) domains. Bcl-2 subfamily proteins, which contain at least BH1 and BH2, promote cell survival by inhibiting the adapters needed for the activation of caspases. Pro-apoptotic members potentially exert their effects by displacing the adapters from the pro-survival proteins; these proteins belong either to the Bax subfamily, which contain BH1-BH3, or to the BH3 subfamily, which mostly only feature BH3 []. Thus, the balance between antagonistic family members is believed to play a role in determining cell fate. Members of the wider Bcl-2 family, which also includes Bcl-x, Bcl-w and Mcl-1, are described by their similarity to Bcl-2 protein, a member of the pro-survival Bcl-2 subfamily []. Full-length Bcl-2 proteins feature all four BH domains, seven alpha-helices, and a C-terminal hydrophobic motif that targets the protein to the outer mitochondrial membrane, ER and nuclear envelope. Active cell suicide (apoptosis) is induced by events such as growth factor withdrawal and toxins. It is controlled by regulators, which have either an inhibitory effect on programmed cell death (anti-apoptotic) or block the protective effect of inhibitors (pro-apoptotic) [, ]. Many viruses have found a way of countering defensive apoptosis by encoding their own anti-apoptosis genes preventing their target-cells from dying too soon. All proteins belonging to the Bcl-2 family [] contain either a BH1, BH2, BH3, or BH4 domain. All anti-apoptotic proteins contain BH1 and BH2 domains, some of them contain an additional N-terminal BH4 domain (Bcl-2, Bcl-x(L), Bcl-w), which is never seen in pro-apoptotic proteins, except for Bcl-x(S). On the other hand, all pro-apoptotic proteins contain a BH3 domain (except for Bad) necessary for dimerisation with other proteins of Bcl-2 family and crucial for their killing activity, some of them also contain BH1 and BH2 domains (Bax, Bak). The BH3 domain is also present in some anti-apoptotic protein, such as Bcl-2 or Bcl-x(L). Proteins that are known to contain these domains include vertebrate Bcl-2 (alpha and beta isoforms) and Bcl-x (isoforms (Bcl-x(L) and Bcl-x(S)); mammalian proteins Bax and Bak; mouse protein Bid; Xenopus laevis proteins Xr1 and Xr11; human induced myeloid leukemia cell differentiation protein MCL1 and Caenorhabditis elegans protein ced-9.; GO: 0042981 regulation of apoptosis; PDB: 1AF3_A 2PON_B 1YSN_A 3PL7_B 3R85_A 2O2N_A 2P1L_C 1R2G_A 2O1Y_A 1BXL_A ....
Probab=22.92 E-value=82 Score=17.63 Aligned_cols=15 Identities=33% Similarity=0.412 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHH
Q psy9692 120 EEAVCRYFYSKVQQK 134 (142)
Q Consensus 120 ~eav~ry~~~k~~qk 134 (142)
.|-|..|++-|+.||
T Consensus 6 R~lV~~yi~yKLsQr 20 (27)
T PF02180_consen 6 RELVEDYISYKLSQR 20 (27)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhhc
Confidence 578999999999986
No 12
>PF12772 GHBP: Growth hormone receptor binding
Probab=22.70 E-value=50 Score=28.27 Aligned_cols=26 Identities=35% Similarity=0.643 Sum_probs=17.6
Q ss_pred HHHHHHHHHhhhhhcccccCChhhhhhhhccCC-CcHH
Q psy9692 84 KRAELEQALVYQFTMTDVVGNPEEERRSDFYYQ-PWAE 120 (142)
Q Consensus 84 ~r~ele~~lg~~K~~~~~~~~~E~eR~sefy~q-pwv~ 120 (142)
|..||-.+||.-. .=+.|||+- ||||
T Consensus 3 KL~ElnsIL~~h~-----------~ykPe~YndDpWVE 29 (295)
T PF12772_consen 3 KLDELNSILAGHD-----------NYKPEFYNDDPWVE 29 (295)
T ss_pred cHHHHHHHhccCC-----------CCCCccccccchhh
Confidence 4567776666442 236789987 9997
No 13
>PF15167 DUF4581: Domain of unknown function (DUF4581)
Probab=22.57 E-value=39 Score=25.25 Aligned_cols=16 Identities=50% Similarity=0.781 Sum_probs=12.6
Q ss_pred ChhhhhhhhccCCCcH
Q psy9692 104 NPEEERRSDFYYQPWA 119 (142)
Q Consensus 104 ~~E~eR~sefy~qpwv 119 (142)
.-|.|||.+||-.|=|
T Consensus 21 aee~erRmDFyadPgv 36 (128)
T PF15167_consen 21 AEEKERRMDFYADPGV 36 (128)
T ss_pred hhhhhhccCcccCCCC
Confidence 3577999999988843
No 14
>PF05589 DUF768: Protein of unknown function (DUF768); InterPro: IPR008486 This family consists of several uncharacterised hypothetical proteins from Rhizobium loti (Mesorhizobium loti).
Probab=22.02 E-value=56 Score=21.75 Aligned_cols=15 Identities=20% Similarity=0.676 Sum_probs=12.2
Q ss_pred HhhCHHHHHHHHHHH
Q psy9692 26 FAKDPQQFINKWIIS 40 (142)
Q Consensus 26 fs~dP~~FI~~wi~S 40 (142)
||+.-.+|++.||+-
T Consensus 1 MS~r~~~Fl~~WI~e 15 (64)
T PF05589_consen 1 MSTRGIEFLDSWIAE 15 (64)
T ss_pred CcchHHHHHHHHHHh
Confidence 456678999999986
No 15
>PLN02264 lipoxygenase
Probab=21.23 E-value=2.3e+02 Score=28.06 Aligned_cols=74 Identities=20% Similarity=0.244 Sum_probs=45.7
Q ss_pred HHHHhhCHHHHHHHHHHHHHhhHHHhhhc---C-CCchhhhhccccC-ChhHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy9692 23 FLSFAKDPQQFINKWIISQTRDLKTMTDV---V-GNPEEERRSDFYY-QPWAEEAVCRYFYSKVQQKRAELEQALVYQF 96 (142)
Q Consensus 23 ~l~fs~dP~~FI~~wi~SQ~rDLk~~~~~---~-~~~eeeRrsefy~-~pwv~EAV~ryl~~kv~q~r~ele~~lg~~K 96 (142)
|..|-.||.+++-+.|-+|...+..|.=. + -.++++=-+++.. ..|..|....=...+-+++.+++|..+.-++
T Consensus 803 ~~~~~~~pe~~~L~tlP~~~qt~~~ms~~~iLS~hs~dE~yLG~~~~~~~w~~D~~~~~af~rF~~~L~eIe~~I~~RN 881 (919)
T PLN02264 803 YASFLADPQKYYFSSMPSLLQTTKFMAVVDTLSTHSPDEEYIGERQQPSIWTGDAEIVEAFYGFSAEIGRIEKEIEKRN 881 (919)
T ss_pred hhhhhcChHHHHHHHCCCHHHHHHHHHHHHHHhhcCCCceeccCCCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 67788899999989999999888887531 1 1222222223221 2455444334444777778888887665554
No 16
>smart00801 dDENN Domain always found downstream of DENN domain, found in a variety of signalling proteins. The dDENN domain is part of the tripartite DENN domain. It is always found downstream of the DENN domain itself, which is found in a variety of signalling proteins involved in Rab-mediated processes or regulation of MAPKs signalling pathways. The DENN domain is always encircled on both sides by more divergent domains, called uDENN (for upstream DENN) and dDENN (for downstream DENN). The function of the DENN domain remains to date unclear, although it appears to represent a good candidate for a GTP/GDP exchange activity.
Probab=20.70 E-value=1.1e+02 Score=19.51 Aligned_cols=26 Identities=19% Similarity=0.354 Sum_probs=18.7
Q ss_pred HHHHHHHHhhCHHHHHHHHHHHHHhh
Q psy9692 19 NREFFLSFAKDPQQFINKWIISQTRD 44 (142)
Q Consensus 19 rr~F~l~fs~dP~~FI~~wi~SQ~rD 44 (142)
+..|+.+-+.+...|++..+.||.-+
T Consensus 38 ~~~Fl~~~~~~~~~Fl~~~~~TQ~F~ 63 (69)
T smart00801 38 KESFLKSRPSSERPFLSKFLETQMFS 63 (69)
T ss_pred HHHHHHhCCchhhHHHHHHHHHhhHH
Confidence 45666666666678999988888644
No 17
>PF09974 DUF2209: Uncharacterized protein conserved in archaea (DUF2209); InterPro: IPR014514 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=20.26 E-value=49 Score=25.02 Aligned_cols=15 Identities=33% Similarity=1.032 Sum_probs=11.1
Q ss_pred hhhccCCC-cHHHHHH
Q psy9692 110 RSDFYYQP-WAEEAVC 124 (142)
Q Consensus 110 ~sefy~qp-wv~eav~ 124 (142)
+-||||+| |+-+++.
T Consensus 76 ~Gefyn~p~w~v~s~l 91 (128)
T PF09974_consen 76 KGEFYNEPEWRVESIL 91 (128)
T ss_pred ccccccChHHHHHHHh
Confidence 57999999 6666553
Done!