Query psy9692
Match_columns 142
No_of_seqs 163 out of 227
Neff 5.6
Searched_HMMs 29240
Date Fri Aug 16 17:11:41 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9692.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9692hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3gv3_A CXCL12 protein; SDF, ch 35.9 15 0.00052 22.7 1.4 14 115-128 50-63 (63)
2 3g36_A Protein DPY-30 homolog; 34.6 38 0.0013 20.9 3.1 30 8-43 20-49 (55)
3 1i27_A Transcription factor II 34.4 16 0.00054 24.2 1.4 16 115-130 7-22 (73)
4 1k1f_A Breakpoint cluster regi 33.9 18 0.00061 23.7 1.5 12 29-40 3-14 (72)
5 2k6l_A Putative uncharacterize 32.7 21 0.00071 22.0 1.6 15 118-132 36-50 (51)
6 3ra3_A P1C; coiled coil domain 32.2 25 0.00087 18.7 1.7 17 1-17 11-27 (28)
7 2ikb_A Hypothetical protein NM 30.9 31 0.0011 25.7 2.7 22 17-39 131-152 (167)
8 1nha_A TFIIF-alpha, transcript 29.5 21 0.00071 24.1 1.3 16 115-130 16-31 (82)
9 2c5k_T Syntaxin TLG1, T-snare 23.6 1.7E+02 0.0058 19.6 7.1 61 26-96 3-63 (95)
10 3b4s_A Protein LUXT; APC91483. 22.8 24 0.00083 24.2 0.7 17 24-40 15-31 (94)
11 3jsb_A Protein L, RNA-directed 21.3 1.2E+02 0.004 23.5 4.3 52 28-81 114-174 (204)
12 2kel_A SVTR protein, uncharact 20.9 45 0.0015 20.3 1.6 13 117-129 41-53 (56)
13 2kbw_B BH3-interacting domain 20.8 1.3E+02 0.0043 17.0 3.4 26 116-141 4-29 (35)
No 1
>3gv3_A CXCL12 protein; SDF, chemokine, disulfide bond, cytokine; 1.60A {Homo sapiens} SCOP: d.9.1.1 PDB: 2nwg_A* 2kee_A 2kec_A 2ked_A 3hp3_A 2j7z_A 1qg7_A 1sdf_A 2sdf_A 1a15_A 2kol_A 2k01_A 2k03_A* 2k04_A 2k05_A*
Probab=35.88 E-value=15 Score=22.75 Aligned_cols=14 Identities=14% Similarity=0.290 Sum_probs=10.8
Q ss_pred CCCcHHHHHHHHHH
Q psy9692 115 YQPWAEEAVCRYFY 128 (142)
Q Consensus 115 ~qpwv~eav~ry~~ 128 (142)
.+|||++.+.+.|+
T Consensus 50 ~~~WVq~~ik~~l~ 63 (63)
T 3gv3_A 50 KLKWIQEYLEKALN 63 (63)
T ss_dssp TCTTHHHHHHHHC-
T ss_pred ChHHHHHHHHHHhC
Confidence 46999999987763
No 2
>3g36_A Protein DPY-30 homolog; X-type four-helix bundle, nucleus, nuclear protein; 1.20A {Homo sapiens}
Probab=34.64 E-value=38 Score=20.85 Aligned_cols=30 Identities=13% Similarity=0.421 Sum_probs=21.4
Q ss_pred HHHHHHHhhhHHHHHHHHHhhCHHHHHHHHHHHHHh
Q psy9692 8 ETVETINSLKTNREFFLSFAKDPQQFINKWIISQTR 43 (142)
Q Consensus 8 ~~i~~i~~~k~rr~F~l~fs~dP~~FI~~wi~SQ~r 43 (142)
.+++.+.++...| -.||++|+-.||-..+.
T Consensus 20 ~L~~GL~~lak~r------P~DPi~~LA~~Ll~~~~ 49 (55)
T 3g36_A 20 ILLQGMAVLAKER------PPNPIEFLASYLLKNKA 49 (55)
T ss_dssp HHHHHHHHHHHHC------CSCHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHhC------CCCHHHHHHHHHHHhCc
Confidence 3556666665555 57999999999987544
No 3
>1i27_A Transcription factor IIF; general transcription factor, RAP74, RAP30, TFIIF, RNA polymerase II, winged-helix domain; 1.02A {Homo sapiens} SCOP: a.4.5.30 PDB: 1j2x_A 2k7l_A*
Probab=34.37 E-value=16 Score=24.15 Aligned_cols=16 Identities=38% Similarity=0.397 Sum_probs=13.0
Q ss_pred CCCcHHHHHHHHHHHH
Q psy9692 115 YQPWAEEAVCRYFYSK 130 (142)
Q Consensus 115 ~qpwv~eav~ry~~~k 130 (142)
.-|=+||+|.|||-+|
T Consensus 7 ~~~iTEe~VrryL~rk 22 (73)
T 1i27_A 7 DVQVTEDAVRRYLTRK 22 (73)
T ss_dssp CSSCCHHHHHHHHHHS
T ss_pred CCCcCHHHHHHHHHcC
Confidence 4467889999999865
No 4
>1k1f_A Breakpoint cluster region protein; oligomerization, coiled coil, BCR-ABL kinase, transferase; 2.20A {Homo sapiens} SCOP: a.147.1.1
Probab=33.92 E-value=18 Score=23.67 Aligned_cols=12 Identities=33% Similarity=0.778 Sum_probs=10.3
Q ss_pred CHHHHHHHHHHH
Q psy9692 29 DPQQFINKWIIS 40 (142)
Q Consensus 29 dP~~FI~~wi~S 40 (142)
+|++|+..|-+.
T Consensus 3 ~pvgf~eaW~aq 14 (72)
T 1k1f_A 3 DPVGFAEAWKAQ 14 (72)
T ss_dssp CHHHHHHHHHHH
T ss_pred chhHHHHHHHHh
Confidence 799999999664
No 5
>2k6l_A Putative uncharacterized protein; xanthonomas axonopodis, RHH, structural proteomics, plasmid, hypothetical DNA binding protein; NMR {Xanthomonas axonopodis PV}
Probab=32.68 E-value=21 Score=22.02 Aligned_cols=15 Identities=27% Similarity=0.634 Sum_probs=12.2
Q ss_pred cHHHHHHHHHHHHHH
Q psy9692 118 WAEEAVCRYFYSKVQ 132 (142)
Q Consensus 118 wv~eav~ry~~~k~~ 132 (142)
-|||||.-||.....
T Consensus 36 fVEeAvr~~lf~~~~ 50 (51)
T 2k6l_A 36 FIEDAVRAYLFERAV 50 (51)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc
Confidence 389999999987653
No 6
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=32.22 E-value=25 Score=18.66 Aligned_cols=17 Identities=41% Similarity=0.526 Sum_probs=11.7
Q ss_pred ChhHHHHHHHHHHHhhh
Q psy9692 1 SLDNKIHETVETINSLK 17 (142)
Q Consensus 1 ~lD~~I~~~i~~i~~~k 17 (142)
+|+++|+.+-++|..+|
T Consensus 11 aleqkiaalkqkiaslk 27 (28)
T 3ra3_A 11 ALEQKIAALKQKIASLK 27 (28)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 36677777777776654
No 7
>2ikb_A Hypothetical protein NMB1012; structural genomics, PSI-2, MCSG, PR structure initiative; 1.70A {Neisseria meningitidis} SCOP: d.2.1.9 PDB: 2is5_A*
Probab=30.87 E-value=31 Score=25.65 Aligned_cols=22 Identities=14% Similarity=0.336 Sum_probs=18.3
Q ss_pred hHHHHHHHHHhhCHHHHHHHHHH
Q psy9692 17 KTNREFFLSFAKDPQQFINKWII 39 (142)
Q Consensus 17 k~rr~F~l~fs~dP~~FI~~wi~ 39 (142)
..|..||.++...| .|.+.|+.
T Consensus 131 ~~R~~~y~~l~~~~-~F~~GW~~ 152 (167)
T 2ikb_A 131 AERLVFYTKLGTFT-SFGKGWVR 152 (167)
T ss_dssp HHHHHHHHHHCCSS-HHHHHHHH
T ss_pred HHHHHHHHHccccc-hhHHHHHH
Confidence 45778999998888 99999994
No 8
>1nha_A TFIIF-alpha, transcription initiation factor IIF, alpha subunit; transcription factor, human general transcription factor TFIIF, RAP74; NMR {Homo sapiens} SCOP: a.4.5.30 PDB: 1onv_A
Probab=29.51 E-value=21 Score=24.07 Aligned_cols=16 Identities=38% Similarity=0.397 Sum_probs=13.0
Q ss_pred CCCcHHHHHHHHHHHH
Q psy9692 115 YQPWAEEAVCRYFYSK 130 (142)
Q Consensus 115 ~qpwv~eav~ry~~~k 130 (142)
.-|=+||+|.|||-+|
T Consensus 16 ~~~iTEe~VRryL~rk 31 (82)
T 1nha_A 16 DVQVTEDAVRRYLTRK 31 (82)
T ss_dssp CCCCCHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHhC
Confidence 4567789999999865
No 9
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T
Probab=23.65 E-value=1.7e+02 Score=19.57 Aligned_cols=61 Identities=15% Similarity=0.144 Sum_probs=44.7
Q ss_pred HhhCHHHHHHHHHHHHHhhHHHhhhcCCCchhhhhccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy9692 26 FAKDPQQFINKWIISQTRDLKTMTDVVGNPEEERRSDFYYQPWAEEAVCRYFYSKVQQKRAELEQALVYQF 96 (142)
Q Consensus 26 fs~dP~~FI~~wi~SQ~rDLk~~~~~~~~~eeeRrsefy~~pwv~EAV~ryl~~kv~q~r~ele~~lg~~K 96 (142)
+|.||-.-+..=+.+|.+.|..+... | .. +..+|...-+ .....-+.+...||..++++..
T Consensus 3 ~s~DPF~~V~~D~~~ql~~l~~~~~~-------~-~~-~~~~~~~~El-~~~l~el~e~l~DL~~SI~i~e 63 (95)
T 2c5k_T 3 NSEDPFQQVVKDTKEQLNRINNYITR-------H-NT-AGDDDQEEEI-QDILKDVEETIVDLDRSIIVMK 63 (95)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHH-------T-CC-C--CTTHHHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHH-------c-cC-CCCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999999987542 1 11 2336888877 6666889999999999998743
No 10
>3b4s_A Protein LUXT; APC91483.1, LUXT domain, structural genomics, PSI-2, protein structure initiative; 3.10A {Vibrio parahaemolyticus rimd 2210633}
Probab=22.84 E-value=24 Score=24.23 Aligned_cols=17 Identities=35% Similarity=0.708 Sum_probs=15.2
Q ss_pred HHHhhCHHHHHHHHHHH
Q psy9692 24 LSFAKDPQQFINKWIIS 40 (142)
Q Consensus 24 l~fs~dP~~FI~~wi~S 40 (142)
+.||++...|+.+|+.+
T Consensus 15 LDFs~~~~af~~SW~~A 31 (94)
T 3b4s_A 15 LEFEKGLDAFSQSWIKA 31 (94)
T ss_dssp SCCSSCHHHHHHHHHHH
T ss_pred hcccCCHHHHHHHHHHH
Confidence 46899999999999987
No 11
>3jsb_A Protein L, RNA-directed RNA polymerase; viral protein, vizier, structural genomics, marseilles struc genomics program @ AFMB; 2.13A {Lymphocytic choriomeningitis virus}
Probab=21.29 E-value=1.2e+02 Score=23.54 Aligned_cols=52 Identities=27% Similarity=0.365 Sum_probs=30.8
Q ss_pred hCHHHHHHHHHHH------HHhhHHHhhhcCCCchhhhhccccC---ChhHHHHHHHHHHHHH
Q psy9692 28 KDPQQFINKWIIS------QTRDLKTMTDVVGNPEEERRSDFYY---QPWAEEAVCRYFYSKV 81 (142)
Q Consensus 28 ~dP~~FI~~wi~S------Q~rDLk~~~~~~~~~eeeRrsefy~---~pwv~EAV~ryl~~kv 81 (142)
-+|.+|=++|.+. =+.||.... .+--|--.-|+.||. .+||-|-+ ||+.-++
T Consensus 114 ~np~~FEqKy~~D~~KL~~Lk~DL~~~G-ItLVPviDGRsnYy~~~~PdWv~er~-RwlL~~L 174 (204)
T 3jsb_A 114 STPASFEKKFIEDTNKLACIREDLAVAG-VTLVPIVDGRCDYDNSFMPEWANFKF-RDLLFKL 174 (204)
T ss_dssp SSHHHHHHHHHHHHHHHHTTHHHHHHTT-CEEEEEEEEESSCCCTTSCHHHHHHH-HHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHcC-ceEeeeecCCcccccccCcHHHHHHH-HHHHHHH
Confidence 3799998888543 334444321 011233333677764 48999988 7776555
No 12
>2kel_A SVTR protein, uncharacterized protein 56B; homodimer, ribbon-helix-helix, transcription repres; NMR {Sulfolobus islandicus rod-shaped virus}
Probab=20.94 E-value=45 Score=20.33 Aligned_cols=13 Identities=31% Similarity=0.358 Sum_probs=10.6
Q ss_pred CcHHHHHHHHHHH
Q psy9692 117 PWAEEAVCRYFYS 129 (142)
Q Consensus 117 pwv~eav~ry~~~ 129 (142)
-||.||+..|+.+
T Consensus 41 ~~i~eAL~~yl~~ 53 (56)
T 2kel_A 41 QAIEEAIKEYLQK 53 (56)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3899999999854
No 13
>2kbw_B BH3-interacting domain death agonist; MCL-1, BID_BH3, complex, alternative splicing, apoptosis, CY developmental protein, differentiation, membrane; NMR {Homo sapiens}
Probab=20.77 E-value=1.3e+02 Score=17.03 Aligned_cols=26 Identities=12% Similarity=0.198 Sum_probs=22.1
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHhh
Q psy9692 116 QPWAEEAVCRYFYSKVQQKRAELEQA 141 (142)
Q Consensus 116 qpwv~eav~ry~~~k~~qk~~~~~~~ 141 (142)
.+|.+|.+++=+-+.++|-..+++.+
T Consensus 4 dse~qe~~i~~ia~qla~igd~~d~~ 29 (35)
T 2kbw_B 4 GSESQEDIIRNIARHLAQVGDSMDRS 29 (35)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHHHHHS
T ss_pred CcccchhHHHHHHHHccchhhhhhcc
Confidence 47999999999999999998888864
Done!