Your job contains 1 sequence.
>psy9692
SLDNKIHETVETINSLKTNREFFLSFAKDPQQFINKWIISQTRDLKTMTDVVGNPEEERR
SDFYYQPWAEEAVCRYFYSKVQQKRAELEQALVYQFTMTDVVGNPEEERRSDFYYQPWAE
EAVCRYFYSKVQQKRAELEQAL
The BLAST search returned 2 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy9692
(142 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
UNIPROTKB|H9KZE0 - symbol:SMARCD1 "Uncharacterized protei... 410 2.6e-38 1
UNIPROTKB|Q96GM5 - symbol:SMARCD1 "SWI/SNF-related matrix... 410 2.6e-38 1
UNIPROTKB|F1SHA1 - symbol:SMARCD1 "Uncharacterized protei... 410 2.6e-38 1
MGI|MGI:1933623 - symbol:Smarcd1 "SWI/SNF related, matrix... 410 2.6e-38 1
RGD|1305406 - symbol:Smarcd1 "SWI/SNF related, matrix ass... 410 2.6e-38 1
UNIPROTKB|F1MTG9 - symbol:SMARCD1 "SWI/SNF-related matrix... 397 6.3e-37 1
UNIPROTKB|Q2TBN1 - symbol:SMARCD1 "SWI/SNF-related matrix... 397 6.3e-37 1
FB|FBgn0025463 - symbol:Bap60 "Brahma associated protein ... 395 1.0e-36 1
ZFIN|ZDB-GENE-080509-2 - symbol:smarcd3b "SWI/SNF related... 358 8.5e-33 1
UNIPROTKB|F1NJN5 - symbol:SMARCD3 "Uncharacterized protei... 342 4.2e-31 1
UNIPROTKB|E1C555 - symbol:SMARCD2 "Uncharacterized protei... 341 5.4e-31 1
UNIPROTKB|Q17QK5 - symbol:SMARCD3 "SWI/SNF related, matri... 339 8.8e-31 1
UNIPROTKB|F1SSN0 - symbol:SMARCD3 "Uncharacterized protei... 339 8.8e-31 1
UNIPROTKB|E1BJD1 - symbol:SMARCD2 "SWI/SNF-related matrix... 341 1.1e-30 1
UNIPROTKB|Q92925 - symbol:SMARCD2 "SWI/SNF-related matrix... 341 1.1e-30 1
UNIPROTKB|F1RSJ9 - symbol:SMARCD2 "Uncharacterized protei... 341 1.1e-30 1
UNIPROTKB|Q6STE5 - symbol:SMARCD3 "SWI/SNF-related matrix... 338 1.1e-30 1
MGI|MGI:1914243 - symbol:Smarcd3 "SWI/SNF related, matrix... 338 1.1e-30 1
RGD|1311869 - symbol:Smarcd3 "SWI/SNF related, matrix ass... 338 1.1e-30 1
MGI|MGI:1933621 - symbol:Smarcd2 "SWI/SNF related, matrix... 337 3.2e-30 1
RGD|69289 - symbol:Smarcd2 "SWI/SNF related, matrix assoc... 337 3.2e-30 1
WB|WBGene00044072 - symbol:ham-3 species:6239 "Caenorhabd... 238 1.6e-19 1
WB|WBGene00015971 - symbol:swsn-2.2 species:6239 "Caenorh... 234 4.6e-19 1
TAIR|locus:2174638 - symbol:CHC1 "AT5G14170" species:3702... 167 1.4e-11 1
POMBASE|SPAC23G3.10c - symbol:ssr3 "SWI/SNF and RSC compl... 159 6.5e-11 1
TAIR|locus:2078713 - symbol:AT3G01890 "AT3G01890" species... 149 9.2e-10 1
WB|WBGene00010523 - symbol:K03B8.4 species:6239 "Caenorha... 139 1.4e-09 1
DICTYBASE|DDB_G0273725 - symbol:snf12-2 "SWI/SNF protein ... 112 9.1e-06 1
DICTYBASE|DDB_G0273203 - symbol:snf12-1 "SWI/SNF protein ... 112 9.1e-06 1
>UNIPROTKB|H9KZE0 [details] [associations]
symbol:SMARCD1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0006337 "nucleosome disassembly" evidence=IEA]
[GO:0016514 "SWI/SNF complex" evidence=IEA] [GO:0032947 "protein
complex scaffold" evidence=IEA] [GO:0048096 "chromatin-mediated
maintenance of transcription" evidence=IEA] [GO:0071564 "npBAF
complex" evidence=IEA] [GO:0071565 "nBAF complex" evidence=IEA]
InterPro:IPR003121 Pfam:PF02201 SUPFAM:SSF47592
GeneTree:ENSGT00390000017809 InterPro:IPR019835 SMART:SM00151
OMA:NTFYPSK EMBL:AADN02072424 Ensembl:ENSGALT00000010024
Uniprot:H9KZE0
Length = 516
Score = 410 (149.4 bits), Expect = 2.6e-38, P = 2.6e-38
Identities = 75/92 (81%), Positives = 84/92 (91%)
Query: 1 SLDNKIHETVETINSLKTNREFFLSFAKDPQQFINKWIISQTRDLKTMTDVVGNPEEERR 60
+LDNKIHET+ETIN LKT REF LSFA+DPQ FIN W+ SQ RDLKTMTDVVGNPEEERR
Sbjct: 420 ALDNKIHETIETINQLKTQREFMLSFARDPQGFINDWLQSQCRDLKTMTDVVGNPEEERR 479
Query: 61 SDFYYQPWAEEAVCRYFYSKVQQKRAELEQAL 92
++FY+QPWA+EAVCRYFYSKVQQ+R ELEQAL
Sbjct: 480 AEFYFQPWAQEAVCRYFYSKVQQRRQELEQAL 511
Score = 224 (83.9 bits), Expect = 8.6e-18, P = 8.6e-18
Identities = 40/46 (86%), Positives = 45/46 (97%)
Query: 97 TMTDVVGNPEEERRSDFYYQPWAEEAVCRYFYSKVQQKRAELEQAL 142
TMTDVVGNPEEERR++FY+QPWA+EAVCRYFYSKVQQ+R ELEQAL
Sbjct: 466 TMTDVVGNPEEERRAEFYFQPWAQEAVCRYFYSKVQQRRQELEQAL 511
>UNIPROTKB|Q96GM5 [details] [associations]
symbol:SMARCD1 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily D member 1"
species:9606 "Homo sapiens" [GO:0007399 "nervous system
development" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0032947 "protein complex scaffold" evidence=IDA]
[GO:0048096 "chromatin-mediated maintenance of transcription"
evidence=IMP] [GO:0006338 "chromatin remodeling" evidence=IDA;IMP]
[GO:0016514 "SWI/SNF complex" evidence=IDA] [GO:0071564 "npBAF
complex" evidence=ISS] [GO:0071565 "nBAF complex" evidence=ISS]
[GO:0003713 "transcription coactivator activity" evidence=NAS]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=NAS] [GO:0006337 "nucleosome disassembly"
evidence=IDA] InterPro:IPR003121 Pfam:PF02201 GO:GO:0007399
GO:GO:0006357 GO:GO:0003713 GO:GO:0071564 GO:GO:0016514
GO:GO:0071565 GO:GO:0032947 EMBL:AC025154 GO:GO:0048096
GO:GO:0006337 SUPFAM:SSF47592 eggNOG:COG5531 CTD:6602
HOGENOM:HOG000240746 KO:K11650 OrthoDB:EOG4DNF48 InterPro:IPR019835
SMART:SM00151 EMBL:AF109733 EMBL:U66617 EMBL:BC009368
IPI:IPI00852816 IPI:IPI00853408 RefSeq:NP_003067.3
RefSeq:NP_620710.2 UniGene:Hs.79335 ProteinModelPortal:Q96GM5
SMR:Q96GM5 DIP:DIP-33390N IntAct:Q96GM5 MINT:MINT-1144212
STRING:Q96GM5 PhosphoSite:Q96GM5 DMDM:238054318 PaxDb:Q96GM5
PRIDE:Q96GM5 DNASU:6602 Ensembl:ENST00000381513
Ensembl:ENST00000394963 GeneID:6602 KEGG:hsa:6602 UCSC:uc001rvx.4
UCSC:uc001rvy.4 GeneCards:GC12P050478 HGNC:HGNC:11106 HPA:HPA004101
MIM:601735 neXtProt:NX_Q96GM5 PharmGKB:PA35956 HOVERGEN:HBG054046
InParanoid:Q96GM5 OMA:NTFYPSK ChiTaRS:SMARCD1 GenomeRNAi:6602
NextBio:25683 ArrayExpress:Q96GM5 Bgee:Q96GM5 CleanEx:HS_SMARCD1
Genevestigator:Q96GM5 Uniprot:Q96GM5
Length = 515
Score = 410 (149.4 bits), Expect = 2.6e-38, P = 2.6e-38
Identities = 75/92 (81%), Positives = 84/92 (91%)
Query: 1 SLDNKIHETVETINSLKTNREFFLSFAKDPQQFINKWIISQTRDLKTMTDVVGNPEEERR 60
+LDNKIHET+ETIN LKT REF LSFA+DPQ FIN W+ SQ RDLKTMTDVVGNPEEERR
Sbjct: 419 TLDNKIHETIETINQLKTQREFMLSFARDPQGFINDWLQSQCRDLKTMTDVVGNPEEERR 478
Query: 61 SDFYYQPWAEEAVCRYFYSKVQQKRAELEQAL 92
++FY+QPWA+EAVCRYFYSKVQQ+R ELEQAL
Sbjct: 479 AEFYFQPWAQEAVCRYFYSKVQQRRQELEQAL 510
Score = 224 (83.9 bits), Expect = 8.6e-18, P = 8.6e-18
Identities = 40/46 (86%), Positives = 45/46 (97%)
Query: 97 TMTDVVGNPEEERRSDFYYQPWAEEAVCRYFYSKVQQKRAELEQAL 142
TMTDVVGNPEEERR++FY+QPWA+EAVCRYFYSKVQQ+R ELEQAL
Sbjct: 465 TMTDVVGNPEEERRAEFYFQPWAQEAVCRYFYSKVQQRRQELEQAL 510
>UNIPROTKB|F1SHA1 [details] [associations]
symbol:SMARCD1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071565 "nBAF complex" evidence=IEA] [GO:0071564 "npBAF
complex" evidence=IEA] [GO:0048096 "chromatin-mediated maintenance
of transcription" evidence=IEA] [GO:0032947 "protein complex
scaffold" evidence=IEA] [GO:0016514 "SWI/SNF complex" evidence=IEA]
[GO:0006337 "nucleosome disassembly" evidence=IEA] GO:GO:0071564
GO:GO:0016514 GO:GO:0071565 GO:GO:0048096 GO:GO:0006337
GeneTree:ENSGT00390000017809 EMBL:CU457393
Ensembl:ENSSSCT00000000230 OMA:XWHRTAT ArrayExpress:F1SHA1
Uniprot:F1SHA1
Length = 513
Score = 410 (149.4 bits), Expect = 2.6e-38, P = 2.6e-38
Identities = 75/92 (81%), Positives = 84/92 (91%)
Query: 1 SLDNKIHETVETINSLKTNREFFLSFAKDPQQFINKWIISQTRDLKTMTDVVGNPEEERR 60
+LDNKIHET+ETIN LKT REF LSFA+DPQ FIN W+ SQ RDLKTMTDVVGNPEEERR
Sbjct: 417 TLDNKIHETIETINQLKTQREFMLSFARDPQGFINDWLQSQCRDLKTMTDVVGNPEEERR 476
Query: 61 SDFYYQPWAEEAVCRYFYSKVQQKRAELEQAL 92
++FY+QPWA+EAVCRYFYSKVQQ+R ELEQAL
Sbjct: 477 AEFYFQPWAQEAVCRYFYSKVQQRRQELEQAL 508
Score = 224 (83.9 bits), Expect = 8.5e-18, P = 8.5e-18
Identities = 40/46 (86%), Positives = 45/46 (97%)
Query: 97 TMTDVVGNPEEERRSDFYYQPWAEEAVCRYFYSKVQQKRAELEQAL 142
TMTDVVGNPEEERR++FY+QPWA+EAVCRYFYSKVQQ+R ELEQAL
Sbjct: 463 TMTDVVGNPEEERRAEFYFQPWAQEAVCRYFYSKVQQRRQELEQAL 508
>MGI|MGI:1933623 [details] [associations]
symbol:Smarcd1 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily d, member 1"
species:10090 "Mus musculus" [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IEA] [GO:0006337
"nucleosome disassembly" evidence=ISO] [GO:0006338 "chromatin
remodeling" evidence=ISO] [GO:0007399 "nervous system development"
evidence=IEA] [GO:0016514 "SWI/SNF complex" evidence=ISO]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0032947
"protein complex scaffold" evidence=ISO] [GO:0048096
"chromatin-mediated maintenance of transcription" evidence=ISO]
[GO:0071564 "npBAF complex" evidence=IDA] [GO:0071565 "nBAF
complex" evidence=IDA] InterPro:IPR003121 Pfam:PF02201
MGI:MGI:1933623 GO:GO:0007399 GO:GO:0071564 GO:GO:0016514
GO:GO:0071565 GO:GO:0048096 GO:GO:0006337 SUPFAM:SSF47592
eggNOG:COG5531 GeneTree:ENSGT00390000017809 CTD:6602
HOGENOM:HOG000240746 KO:K11650 OrthoDB:EOG4DNF48 InterPro:IPR019835
SMART:SM00151 HOVERGEN:HBG054046 OMA:NTFYPSK ChiTaRS:SMARCD1
EMBL:M25773 EMBL:U66620 EMBL:BC026783 EMBL:BC059921 EMBL:AK075611
IPI:IPI00121270 IPI:IPI00223126 PIR:A30222 RefSeq:NP_114030.2
UniGene:Mm.273756 PDB:1UHR PDBsum:1UHR ProteinModelPortal:Q61466
SMR:Q61466 IntAct:Q61466 STRING:Q61466 PhosphoSite:Q61466
PaxDb:Q61466 PRIDE:Q61466 Ensembl:ENSMUST00000023759 GeneID:83797
KEGG:mmu:83797 UCSC:uc007xqb.1 InParanoid:Q61466
EvolutionaryTrace:Q61466 NextBio:350782 Bgee:Q61466
Genevestigator:Q61466 GermOnline:ENSMUSG00000023018 Uniprot:Q61466
Length = 515
Score = 410 (149.4 bits), Expect = 2.6e-38, P = 2.6e-38
Identities = 75/92 (81%), Positives = 84/92 (91%)
Query: 1 SLDNKIHETVETINSLKTNREFFLSFAKDPQQFINKWIISQTRDLKTMTDVVGNPEEERR 60
+LDNKIHET+ETIN LKT REF LSFA+DPQ FIN W+ SQ RDLKTMTDVVGNPEEERR
Sbjct: 419 TLDNKIHETIETINQLKTQREFMLSFARDPQGFINDWLQSQCRDLKTMTDVVGNPEEERR 478
Query: 61 SDFYYQPWAEEAVCRYFYSKVQQKRAELEQAL 92
++FY+QPWA+EAVCRYFYSKVQQ+R ELEQAL
Sbjct: 479 AEFYFQPWAQEAVCRYFYSKVQQRRQELEQAL 510
Score = 224 (83.9 bits), Expect = 8.6e-18, P = 8.6e-18
Identities = 40/46 (86%), Positives = 45/46 (97%)
Query: 97 TMTDVVGNPEEERRSDFYYQPWAEEAVCRYFYSKVQQKRAELEQAL 142
TMTDVVGNPEEERR++FY+QPWA+EAVCRYFYSKVQQ+R ELEQAL
Sbjct: 465 TMTDVVGNPEEERRAEFYFQPWAQEAVCRYFYSKVQQRRQELEQAL 510
>RGD|1305406 [details] [associations]
symbol:Smarcd1 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily d, member 1"
species:10116 "Rattus norvegicus" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0006337 "nucleosome disassembly" evidence=IEA;ISO] [GO:0006338
"chromatin remodeling" evidence=ISO] [GO:0008150
"biological_process" evidence=ND] [GO:0016514 "SWI/SNF complex"
evidence=IEA;ISO] [GO:0032947 "protein complex scaffold"
evidence=IEA;ISO] [GO:0048096 "chromatin-mediated maintenance of
transcription" evidence=IEA;ISO] [GO:0071564 "npBAF complex"
evidence=IEA;ISO] [GO:0071565 "nBAF complex" evidence=IEA;ISO]
InterPro:IPR003121 Pfam:PF02201 RGD:1305406 GO:GO:0071564
GO:GO:0016514 GO:GO:0071565 GO:GO:0048096 GO:GO:0006337
EMBL:CH474035 SUPFAM:SSF47592 GeneTree:ENSGT00390000017809 CTD:6602
KO:K11650 OrthoDB:EOG4DNF48 InterPro:IPR019835 SMART:SM00151
IPI:IPI00366479 RefSeq:NP_001102222.1 UniGene:Rn.21196
Ensembl:ENSRNOT00000043163 GeneID:363002 KEGG:rno:363002
UCSC:RGD:1305406 NextBio:682087 Uniprot:D3ZBS9
Length = 515
Score = 410 (149.4 bits), Expect = 2.6e-38, P = 2.6e-38
Identities = 75/92 (81%), Positives = 84/92 (91%)
Query: 1 SLDNKIHETVETINSLKTNREFFLSFAKDPQQFINKWIISQTRDLKTMTDVVGNPEEERR 60
+LDNKIHET+ETIN LKT REF LSFA+DPQ FIN W+ SQ RDLKTMTDVVGNPEEERR
Sbjct: 419 TLDNKIHETIETINQLKTQREFMLSFARDPQGFINDWLQSQCRDLKTMTDVVGNPEEERR 478
Query: 61 SDFYYQPWAEEAVCRYFYSKVQQKRAELEQAL 92
++FY+QPWA+EAVCRYFYSKVQQ+R ELEQAL
Sbjct: 479 AEFYFQPWAQEAVCRYFYSKVQQRRQELEQAL 510
Score = 224 (83.9 bits), Expect = 8.6e-18, P = 8.6e-18
Identities = 40/46 (86%), Positives = 45/46 (97%)
Query: 97 TMTDVVGNPEEERRSDFYYQPWAEEAVCRYFYSKVQQKRAELEQAL 142
TMTDVVGNPEEERR++FY+QPWA+EAVCRYFYSKVQQ+R ELEQAL
Sbjct: 465 TMTDVVGNPEEERRAEFYFQPWAQEAVCRYFYSKVQQRRQELEQAL 510
>UNIPROTKB|F1MTG9 [details] [associations]
symbol:SMARCD1 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily D member 1"
species:9913 "Bos taurus" [GO:0071565 "nBAF complex" evidence=IEA]
[GO:0071564 "npBAF complex" evidence=IEA] [GO:0048096
"chromatin-mediated maintenance of transcription" evidence=IEA]
[GO:0032947 "protein complex scaffold" evidence=IEA] [GO:0016514
"SWI/SNF complex" evidence=IEA] [GO:0006337 "nucleosome
disassembly" evidence=IEA] InterPro:IPR003121 Pfam:PF02201
GO:GO:0071564 GO:GO:0016514 GO:GO:0071565 GO:GO:0048096
GO:GO:0006337 SUPFAM:SSF47592 GeneTree:ENSGT00390000017809
IPI:IPI00723099 UniGene:Bt.87407 InterPro:IPR019835 SMART:SM00151
OMA:NTFYPSK EMBL:DAAA02012932 Ensembl:ENSBTAT00000001284
Uniprot:F1MTG9
Length = 515
Score = 397 (144.8 bits), Expect = 6.3e-37, P = 6.3e-37
Identities = 73/92 (79%), Positives = 82/92 (89%)
Query: 1 SLDNKIHETVETINSLKTNREFFLSFAKDPQQFINKWIISQTRDLKTMTDVVGNPEEERR 60
+LDNKIHET+ETIN LKT REF LSFA+DPQ FIN W+ SQ RDLK MTDVVGN EEERR
Sbjct: 419 TLDNKIHETIETINQLKTQREFMLSFARDPQGFINDWLQSQCRDLKVMTDVVGNSEEERR 478
Query: 61 SDFYYQPWAEEAVCRYFYSKVQQKRAELEQAL 92
++FY+QPWA+EAVCRYFYSKVQQ+R ELEQAL
Sbjct: 479 AEFYFQPWAQEAVCRYFYSKVQQRRQELEQAL 510
Score = 211 (79.3 bits), Expect = 2.2e-16, P = 2.2e-16
Identities = 38/45 (84%), Positives = 43/45 (95%)
Query: 98 MTDVVGNPEEERRSDFYYQPWAEEAVCRYFYSKVQQKRAELEQAL 142
MTDVVGN EEERR++FY+QPWA+EAVCRYFYSKVQQ+R ELEQAL
Sbjct: 466 MTDVVGNSEEERRAEFYFQPWAQEAVCRYFYSKVQQRRQELEQAL 510
>UNIPROTKB|Q2TBN1 [details] [associations]
symbol:SMARCD1 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily D member 1"
species:9913 "Bos taurus" [GO:0071565 "nBAF complex" evidence=ISS]
[GO:0071564 "npBAF complex" evidence=ISS] [GO:0016568 "chromatin
modification" evidence=IEA] [GO:0007399 "nervous system
development" evidence=IEA] InterPro:IPR003121 Pfam:PF02201
GO:GO:0007399 GO:GO:0016568 GO:GO:0071564 GO:GO:0071565
SUPFAM:SSF47592 eggNOG:COG5531 EMBL:BC109890 IPI:IPI00723099
RefSeq:NP_001033648.1 UniGene:Bt.87407 ProteinModelPortal:Q2TBN1
SMR:Q2TBN1 STRING:Q2TBN1 PRIDE:Q2TBN1 GeneID:533232 KEGG:bta:533232
CTD:6602 HOGENOM:HOG000240746 InParanoid:Q2TBN1 KO:K11650
OrthoDB:EOG4DNF48 NextBio:20875968 InterPro:IPR019835 SMART:SM00151
Uniprot:Q2TBN1
Length = 515
Score = 397 (144.8 bits), Expect = 6.3e-37, P = 6.3e-37
Identities = 73/92 (79%), Positives = 82/92 (89%)
Query: 1 SLDNKIHETVETINSLKTNREFFLSFAKDPQQFINKWIISQTRDLKTMTDVVGNPEEERR 60
+LDNKIHET+ETIN LKT REF LSFA+DPQ FIN W+ SQ RDLK MTDVVGN EEERR
Sbjct: 419 TLDNKIHETIETINQLKTQREFMLSFARDPQGFINDWLQSQCRDLKVMTDVVGNSEEERR 478
Query: 61 SDFYYQPWAEEAVCRYFYSKVQQKRAELEQAL 92
++FY+QPWA+EAVCRYFYSKVQQ+R ELEQAL
Sbjct: 479 AEFYFQPWAQEAVCRYFYSKVQQRRQELEQAL 510
Score = 211 (79.3 bits), Expect = 2.2e-16, P = 2.2e-16
Identities = 38/45 (84%), Positives = 43/45 (95%)
Query: 98 MTDVVGNPEEERRSDFYYQPWAEEAVCRYFYSKVQQKRAELEQAL 142
MTDVVGN EEERR++FY+QPWA+EAVCRYFYSKVQQ+R ELEQAL
Sbjct: 466 MTDVVGNSEEERRAEFYFQPWAQEAVCRYFYSKVQQRRQELEQAL 510
>FB|FBgn0025463 [details] [associations]
symbol:Bap60 "Brahma associated protein 60kD" species:7227
"Drosophila melanogaster" [GO:0003713 "transcription coactivator
activity" evidence=IC] [GO:0005515 "protein binding" evidence=IPI]
[GO:0035060 "brahma complex" evidence=IDA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0010628 "positive
regulation of gene expression" evidence=IGI] [GO:0001085 "RNA
polymerase II transcription factor binding" evidence=IPI]
[GO:0031453 "positive regulation of heterochromatin assembly"
evidence=IMP] [GO:0008134 "transcription factor binding"
evidence=ISS] [GO:0003677 "DNA binding" evidence=IDA] [GO:0048813
"dendrite morphogenesis" evidence=IMP] [GO:0048666 "neuron
development" evidence=IMP] [GO:0007517 "muscle organ development"
evidence=IMP] InterPro:IPR003121 Pfam:PF02201 GO:GO:0045893
GO:GO:0003677 GO:GO:0048813 GO:GO:0007517 GO:GO:0035060
SUPFAM:SSF47592 eggNOG:COG5531 InterPro:IPR019835 SMART:SM00151
EMBL:AF071503 ProteinModelPortal:O76490 SMR:O76490 IntAct:O76490
STRING:O76490 PaxDb:O76490 PRIDE:O76490 FlyBase:FBgn0025463
InParanoid:O76490 OrthoDB:EOG4HDR8S ArrayExpress:O76490 Bgee:O76490
GO:GO:0031453 Uniprot:O76490
Length = 515
Score = 395 (144.1 bits), Expect = 1.0e-36, P = 1.0e-36
Identities = 72/91 (79%), Positives = 81/91 (89%)
Query: 2 LDNKIHETVETINSLKTNREFFLSFAKDPQQFINKWIISQTRDLKTMTDVVGNPEEERRS 61
LD KIHETV+TIN + TNREFFLSFAKDPQ FI++WIIS+TRDLK MTDV GNPEEERR+
Sbjct: 420 LDTKIHETVDTINQMNTNREFFLSFAKDPQMFIHRWIISETRDLKLMTDVAGNPEEERRA 479
Query: 62 DFYYQPWAEEAVCRYFYSKVQQKRAELEQAL 92
+FYYQPW EAV RYF++KV QKRAELEQAL
Sbjct: 480 EFYYQPWTHEAVSRYFFTKVNQKRAELEQAL 510
Score = 199 (75.1 bits), Expect = 4.4e-15, P = 4.4e-15
Identities = 36/45 (80%), Positives = 40/45 (88%)
Query: 98 MTDVVGNPEEERRSDFYYQPWAEEAVCRYFYSKVQQKRAELEQAL 142
MTDV GNPEEERR++FYYQPW EAV RYF++KV QKRAELEQAL
Sbjct: 466 MTDVAGNPEEERRAEFYYQPWTHEAVSRYFFTKVNQKRAELEQAL 510
>ZFIN|ZDB-GENE-080509-2 [details] [associations]
symbol:smarcd3b "SWI/SNF related, matrix associated,
actin dependent regulator of chromatin, subfamily d, member 3b"
species:7955 "Danio rerio" [GO:0007368 "determination of left/right
symmetry" evidence=IMP] [GO:0003007 "heart morphogenesis"
evidence=IGI] [GO:0055007 "cardiac muscle cell differentiation"
evidence=IGI] InterPro:IPR003121 Pfam:PF02201
ZFIN:ZDB-GENE-080509-2 GO:GO:0003007 GO:GO:0055007 GO:GO:0007368
SUPFAM:SSF47592 eggNOG:COG5531 GeneTree:ENSGT00390000017809
HOGENOM:HOG000240746 KO:K11650 InterPro:IPR019835 SMART:SM00151
HOVERGEN:HBG054046 OrthoDB:EOG4QFWD6 OMA:PAISACY EMBL:BX005319
EMBL:BX322787 EMBL:EF552706 IPI:IPI00501254 RefSeq:NP_001120778.1
UniGene:Dr.28422 STRING:B2KL77 Ensembl:ENSDART00000006724
GeneID:562140 KEGG:dre:562140 CTD:562140 NextBio:20884266
Uniprot:B2KL77
Length = 476
Score = 358 (131.1 bits), Expect = 8.5e-33, P = 8.5e-33
Identities = 64/97 (65%), Positives = 81/97 (83%)
Query: 1 SLDNKIHETVETINSLKTNREFFLSFAKDPQQFINKWIISQTRDLKTMTDVVGNPEEERR 60
SLDNKIHET+E+IN LK R+F LSF++DP+ +I W+ SQ+RDLK MTDV GNPEEERR
Sbjct: 380 SLDNKIHETIESINQLKIQRDFMLSFSRDPKGYIQDWLKSQSRDLKLMTDVAGNPEEERR 439
Query: 61 SDFYYQPWAEEAVCRYFYSKVQQKRAELEQALVYQFT 97
++FY+QPW++EAV RYFY K+QQ+R ELEQAL + T
Sbjct: 440 AEFYHQPWSQEAVSRYFYCKIQQRRQELEQALALRNT 476
Score = 195 (73.7 bits), Expect = 1.0e-14, P = 1.0e-14
Identities = 34/45 (75%), Positives = 41/45 (91%)
Query: 98 MTDVVGNPEEERRSDFYYQPWAEEAVCRYFYSKVQQKRAELEQAL 142
MTDV GNPEEERR++FY+QPW++EAV RYFY K+QQ+R ELEQAL
Sbjct: 427 MTDVAGNPEEERRAEFYHQPWSQEAVSRYFYCKIQQRRQELEQAL 471
>UNIPROTKB|F1NJN5 [details] [associations]
symbol:SMARCD3 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0006337 "nucleosome disassembly" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=IEA] [GO:0016922
"ligand-dependent nuclear receptor binding" evidence=IEA]
[GO:0030374 "ligand-dependent nuclear receptor transcription
coactivator activity" evidence=IEA] [GO:0035257 "nuclear hormone
receptor binding" evidence=IEA] [GO:0042692 "muscle cell
differentiation" evidence=IEA] [GO:0043393 "regulation of protein
binding" evidence=IEA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0071564 "npBAF
complex" evidence=IEA] [GO:0071565 "nBAF complex" evidence=IEA]
[GO:0000790 "nuclear chromatin" evidence=IEA] [GO:0002052 "positive
regulation of neuroblast proliferation" evidence=IEA] [GO:0003139
"secondary heart field specification" evidence=IEA] [GO:0003219
"cardiac right ventricle formation" evidence=IEA] [GO:0003407
"neural retina development" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR003121 Pfam:PF02201 GO:GO:0005737
GO:GO:0045893 GO:GO:0043393 GO:GO:0006351 GO:GO:0006338
GO:GO:0000790 GO:GO:0071564 GO:GO:0071565 GO:GO:0006337
GO:GO:0030374 SUPFAM:SSF47592 GeneTree:ENSGT00390000017809
InterPro:IPR019835 SMART:SM00151 OMA:PLKSQMS EMBL:AADN02078761
EMBL:AADN02078762 EMBL:AADN02078763 EMBL:AADN02078764
EMBL:AADN02078765 EMBL:AADN02078766 IPI:IPI00583326
Ensembl:ENSGALT00000021298 Uniprot:F1NJN5
Length = 462
Score = 342 (125.4 bits), Expect = 4.2e-31, P = 4.2e-31
Identities = 61/92 (66%), Positives = 79/92 (85%)
Query: 1 SLDNKIHETVETINSLKTNREFFLSFAKDPQQFINKWIISQTRDLKTMTDVVGNPEEERR 60
+LDNKIHET+E+IN LK R+F LSF+KDP+ +I + SQ+RDLK MTDVVGNPEEERR
Sbjct: 366 ALDNKIHETIESINQLKIQRDFMLSFSKDPKGYIQDLLRSQSRDLKVMTDVVGNPEEERR 425
Query: 61 SDFYYQPWAEEAVCRYFYSKVQQKRAELEQAL 92
++FY++PW++EAV RYFY K+QQ+R ELEQ+L
Sbjct: 426 AEFYHEPWSQEAVSRYFYCKIQQRRQELEQSL 457
Score = 193 (73.0 bits), Expect = 1.6e-14, P = 1.6e-14
Identities = 33/45 (73%), Positives = 42/45 (93%)
Query: 98 MTDVVGNPEEERRSDFYYQPWAEEAVCRYFYSKVQQKRAELEQAL 142
MTDVVGNPEEERR++FY++PW++EAV RYFY K+QQ+R ELEQ+L
Sbjct: 413 MTDVVGNPEEERRAEFYHEPWSQEAVSRYFYCKIQQRRQELEQSL 457
>UNIPROTKB|E1C555 [details] [associations]
symbol:SMARCD2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0006337 "nucleosome disassembly" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=IEA] [GO:0016514
"SWI/SNF complex" evidence=IEA] InterPro:IPR003121 Pfam:PF02201
GO:GO:0006338 GO:GO:0016514 GO:GO:0006337 SUPFAM:SSF47592
GeneTree:ENSGT00390000017809 InterPro:IPR019835 SMART:SM00151
OMA:TQTRASI EMBL:AADN02056697 EMBL:AADN02056698 EMBL:AADN02056699
EMBL:AADN02056700 EMBL:AADN02056701 EMBL:AADN02056702
IPI:IPI00593811 Ensembl:ENSGALT00000000495 NextBio:20829314
Uniprot:E1C555
Length = 475
Score = 341 (125.1 bits), Expect = 5.4e-31, P = 5.4e-31
Identities = 63/97 (64%), Positives = 79/97 (81%)
Query: 1 SLDNKIHETVETINSLKTNREFFLSFAKDPQQFINKWIISQTRDLKTMTDVVGNPEEERR 60
SLD KIHET+E+IN LKT R+F LSF+ +PQ FI +WI SQ RDLK +TDV+GNPEEERR
Sbjct: 379 SLDAKIHETIESINQLKTQRDFMLSFSNNPQDFIQEWIKSQRRDLKIITDVIGNPEEERR 438
Query: 61 SDFYYQPWAEEAVCRYFYSKVQQKRAELEQALVYQFT 97
++FY QPWA+EAV R+ ++KVQQ+R ELEQ L + T
Sbjct: 439 AEFYQQPWAQEAVGRHIFAKVQQRRQELEQVLGIRLT 475
Score = 176 (67.0 bits), Expect = 1.2e-12, P = 1.2e-12
Identities = 31/45 (68%), Positives = 40/45 (88%)
Query: 98 MTDVVGNPEEERRSDFYYQPWAEEAVCRYFYSKVQQKRAELEQAL 142
+TDV+GNPEEERR++FY QPWA+EAV R+ ++KVQQ+R ELEQ L
Sbjct: 426 ITDVIGNPEEERRAEFYQQPWAQEAVGRHIFAKVQQRRQELEQVL 470
>UNIPROTKB|Q17QK5 [details] [associations]
symbol:SMARCD3 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily d, member 3"
species:9913 "Bos taurus" [GO:0071565 "nBAF complex" evidence=IEA]
[GO:0071564 "npBAF complex" evidence=IEA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0043393 "regulation of protein binding" evidence=IEA]
[GO:0042692 "muscle cell differentiation" evidence=IEA] [GO:0035257
"nuclear hormone receptor binding" evidence=IEA] [GO:0030374
"ligand-dependent nuclear receptor transcription coactivator
activity" evidence=IEA] [GO:0016922 "ligand-dependent nuclear
receptor binding" evidence=IEA] [GO:0008134 "transcription factor
binding" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=IEA]
[GO:0006337 "nucleosome disassembly" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0003407 "neural retina development"
evidence=IEA] [GO:0003219 "cardiac right ventricle formation"
evidence=IEA] [GO:0003139 "secondary heart field specification"
evidence=IEA] [GO:0002052 "positive regulation of neuroblast
proliferation" evidence=IEA] [GO:0000790 "nuclear chromatin"
evidence=IEA] InterPro:IPR003121 Pfam:PF02201 GO:GO:0005737
GO:GO:0045893 GO:GO:0043393 GO:GO:0006351 GO:GO:0006338
GO:GO:0042692 GO:GO:0000790 GO:GO:0071564 GO:GO:0003407
GO:GO:0071565 GO:GO:0006337 GO:GO:0002052 GO:GO:0030374
GO:GO:0003139 SUPFAM:SSF47592 GO:GO:0003219
GeneTree:ENSGT00390000017809 HOGENOM:HOG000240746
InterPro:IPR019835 SMART:SM00151 HOVERGEN:HBG054046 OMA:PLKSQMS
EMBL:DAAA02012020 EMBL:DAAA02012021 EMBL:DAAA02012022
EMBL:DAAA02012023 EMBL:DAAA02012024 EMBL:BC118305 IPI:IPI00788564
UniGene:Bt.53201 SMR:Q17QK5 STRING:Q17QK5
Ensembl:ENSBTAT00000028051 Uniprot:Q17QK5
Length = 470
Score = 339 (124.4 bits), Expect = 8.8e-31, P = 8.8e-31
Identities = 61/97 (62%), Positives = 81/97 (83%)
Query: 1 SLDNKIHETVETINSLKTNREFFLSFAKDPQQFINKWIISQTRDLKTMTDVVGNPEEERR 60
+LD+KIHET+E+IN LK R+F LSF++DP+ +I + SQ+RDLK MTDV GNPEEERR
Sbjct: 374 ALDSKIHETIESINQLKIQRDFMLSFSRDPKGYIQDLLRSQSRDLKVMTDVAGNPEEERR 433
Query: 61 SDFYYQPWAEEAVCRYFYSKVQQKRAELEQALVYQFT 97
++FY+QPW++EAV RYFY K+QQ+R ELEQ+LV + T
Sbjct: 434 AEFYHQPWSQEAVSRYFYCKIQQRRQELEQSLVVRNT 470
Score = 192 (72.6 bits), Expect = 2.1e-14, P = 2.1e-14
Identities = 33/45 (73%), Positives = 41/45 (91%)
Query: 98 MTDVVGNPEEERRSDFYYQPWAEEAVCRYFYSKVQQKRAELEQAL 142
MTDV GNPEEERR++FY+QPW++EAV RYFY K+QQ+R ELEQ+L
Sbjct: 421 MTDVAGNPEEERRAEFYHQPWSQEAVSRYFYCKIQQRRQELEQSL 465
>UNIPROTKB|F1SSN0 [details] [associations]
symbol:SMARCD3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071565 "nBAF complex" evidence=IEA] [GO:0071564 "npBAF
complex" evidence=IEA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0043393 "regulation
of protein binding" evidence=IEA] [GO:0042692 "muscle cell
differentiation" evidence=IEA] [GO:0035257 "nuclear hormone
receptor binding" evidence=IEA] [GO:0030374 "ligand-dependent
nuclear receptor transcription coactivator activity" evidence=IEA]
[GO:0016922 "ligand-dependent nuclear receptor binding"
evidence=IEA] [GO:0008134 "transcription factor binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=IEA]
[GO:0006337 "nucleosome disassembly" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0003407 "neural retina development"
evidence=IEA] [GO:0003219 "cardiac right ventricle formation"
evidence=IEA] [GO:0003139 "secondary heart field specification"
evidence=IEA] [GO:0002052 "positive regulation of neuroblast
proliferation" evidence=IEA] [GO:0000790 "nuclear chromatin"
evidence=IEA] InterPro:IPR003121 Pfam:PF02201 GO:GO:0005737
GO:GO:0045893 GO:GO:0043393 GO:GO:0006351 GO:GO:0006338
GO:GO:0042692 GO:GO:0000790 GO:GO:0071564 GO:GO:0003407
GO:GO:0071565 GO:GO:0006337 GO:GO:0002052 GO:GO:0030374
GO:GO:0003139 SUPFAM:SSF47592 GO:GO:0003219
GeneTree:ENSGT00390000017809 InterPro:IPR019835 SMART:SM00151
OMA:PLKSQMS EMBL:FP102583 Ensembl:ENSSSCT00000017896 Uniprot:F1SSN0
Length = 486
Score = 339 (124.4 bits), Expect = 8.8e-31, P = 8.8e-31
Identities = 61/97 (62%), Positives = 81/97 (83%)
Query: 1 SLDNKIHETVETINSLKTNREFFLSFAKDPQQFINKWIISQTRDLKTMTDVVGNPEEERR 60
+LD+KIHET+E+IN LK R+F LSF++DP+ +I + SQ+RDLK MTDV GNPEEERR
Sbjct: 390 ALDSKIHETIESINQLKIQRDFMLSFSRDPKGYIQDLLRSQSRDLKVMTDVAGNPEEERR 449
Query: 61 SDFYYQPWAEEAVCRYFYSKVQQKRAELEQALVYQFT 97
++FY+QPW++EAV RYFY K+QQ+R ELEQ+LV + T
Sbjct: 450 AEFYHQPWSQEAVSRYFYCKIQQRRQELEQSLVVRNT 486
Score = 192 (72.6 bits), Expect = 2.2e-14, P = 2.2e-14
Identities = 33/45 (73%), Positives = 41/45 (91%)
Query: 98 MTDVVGNPEEERRSDFYYQPWAEEAVCRYFYSKVQQKRAELEQAL 142
MTDV GNPEEERR++FY+QPW++EAV RYFY K+QQ+R ELEQ+L
Sbjct: 437 MTDVAGNPEEERRAEFYHQPWSQEAVSRYFYCKIQQRRQELEQSL 481
>UNIPROTKB|E1BJD1 [details] [associations]
symbol:SMARCD2 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily D member 2"
species:9913 "Bos taurus" [GO:0016514 "SWI/SNF complex"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=IEA]
[GO:0006337 "nucleosome disassembly" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
InterPro:IPR003121 Pfam:PF02201 GO:GO:0006355 GO:GO:0006351
GO:GO:0006338 GO:GO:0016514 GO:GO:0006337 SUPFAM:SSF47592
GeneTree:ENSGT00390000017809 KO:K11650 EMBL:AAFC03085035
IPI:IPI00703184 RefSeq:NP_001192391.1 UniGene:Bt.1380
Ensembl:ENSBTAT00000028049 GeneID:789613 KEGG:bta:789613 CTD:6603
OMA:TQTRASI NextBio:20929791 Uniprot:E1BJD1
Length = 531
Score = 341 (125.1 bits), Expect = 1.1e-30, P = 1.1e-30
Identities = 63/97 (64%), Positives = 79/97 (81%)
Query: 1 SLDNKIHETVETINSLKTNREFFLSFAKDPQQFINKWIISQTRDLKTMTDVVGNPEEERR 60
SLD KIHET+E+IN LKT R+F LSF+ DPQ FI +W+ SQ RDLK +TDV+GNPEEERR
Sbjct: 435 SLDVKIHETIESINQLKTQRDFMLSFSTDPQDFIQEWLRSQRRDLKIITDVIGNPEEERR 494
Query: 61 SDFYYQPWAEEAVCRYFYSKVQQKRAELEQALVYQFT 97
+ FY+QPWA+EAV R+ ++KVQQ+R ELEQ L + T
Sbjct: 495 AAFYHQPWAQEAVGRHIFAKVQQRRQELEQVLGIRLT 531
Score = 175 (66.7 bits), Expect = 1.9e-12, P = 1.9e-12
Identities = 31/45 (68%), Positives = 40/45 (88%)
Query: 98 MTDVVGNPEEERRSDFYYQPWAEEAVCRYFYSKVQQKRAELEQAL 142
+TDV+GNPEEERR+ FY+QPWA+EAV R+ ++KVQQ+R ELEQ L
Sbjct: 482 ITDVIGNPEEERRAAFYHQPWAQEAVGRHIFAKVQQRRQELEQVL 526
>UNIPROTKB|Q92925 [details] [associations]
symbol:SMARCD2 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily D member 2"
species:9606 "Homo sapiens" [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0016514 "SWI/SNF complex"
evidence=IDA] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=NAS] [GO:0003713 "transcription
coactivator activity" evidence=NAS] [GO:0006337 "nucleosome
disassembly" evidence=IDA] [GO:0006338 "chromatin remodeling"
evidence=IDA] InterPro:IPR003121 Pfam:PF02201 GO:GO:0006357
GO:GO:0006351 GO:GO:0006338 GO:GO:0003713 GO:GO:0016514
EMBL:CH471109 GO:GO:0006337 SUPFAM:SSF47592 EMBL:AC015651
eggNOG:COG5531 KO:K11650 HOVERGEN:HBG054046 CTD:6603 OMA:TQTRASI
EMBL:U66618 EMBL:AK300939 EMBL:AK303951 EMBL:BC018953 EMBL:BC142963
EMBL:AF113019 IPI:IPI00514042 IPI:IPI00853043 IPI:IPI00939917
RefSeq:NP_001091896.1 UniGene:Hs.250581 ProteinModelPortal:Q92925
SMR:Q92925 DIP:DIP-31182N IntAct:Q92925 MINT:MINT-1138034
STRING:Q92925 PhosphoSite:Q92925 DMDM:57013095 PaxDb:Q92925
PRIDE:Q92925 Ensembl:ENST00000323347 Ensembl:ENST00000448276
GeneID:6603 KEGG:hsa:6603 UCSC:uc010dea.1 UCSC:uc010wpt.1
GeneCards:GC17M061909 H-InvDB:HIX0014075 HGNC:HGNC:11107 MIM:601736
neXtProt:NX_Q92925 PharmGKB:PA35957 OrthoDB:EOG4WQ12P
ChiTaRS:SMARCD2 GenomeRNAi:6603 NextBio:25689 ArrayExpress:Q92925
Bgee:Q92925 CleanEx:HS_SMARCD2 Genevestigator:Q92925
GermOnline:ENSG00000108604 Uniprot:Q92925
Length = 531
Score = 341 (125.1 bits), Expect = 1.1e-30, P = 1.1e-30
Identities = 63/97 (64%), Positives = 79/97 (81%)
Query: 1 SLDNKIHETVETINSLKTNREFFLSFAKDPQQFINKWIISQTRDLKTMTDVVGNPEEERR 60
SLD KIHET+E+IN LKT R+F LSF+ DPQ FI +W+ SQ RDLK +TDV+GNPEEERR
Sbjct: 435 SLDVKIHETIESINQLKTQRDFMLSFSTDPQDFIQEWLRSQRRDLKIITDVIGNPEEERR 494
Query: 61 SDFYYQPWAEEAVCRYFYSKVQQKRAELEQALVYQFT 97
+ FY+QPWA+EAV R+ ++KVQQ+R ELEQ L + T
Sbjct: 495 AAFYHQPWAQEAVGRHIFAKVQQRRQELEQVLGIRLT 531
Score = 175 (66.7 bits), Expect = 1.9e-12, P = 1.9e-12
Identities = 31/45 (68%), Positives = 40/45 (88%)
Query: 98 MTDVVGNPEEERRSDFYYQPWAEEAVCRYFYSKVQQKRAELEQAL 142
+TDV+GNPEEERR+ FY+QPWA+EAV R+ ++KVQQ+R ELEQ L
Sbjct: 482 ITDVIGNPEEERRAAFYHQPWAQEAVGRHIFAKVQQRRQELEQVL 526
>UNIPROTKB|F1RSJ9 [details] [associations]
symbol:SMARCD2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0016514 "SWI/SNF complex" evidence=IEA] [GO:0006338
"chromatin remodeling" evidence=IEA] [GO:0006337 "nucleosome
disassembly" evidence=IEA] InterPro:IPR003121 Pfam:PF02201
GO:GO:0006338 GO:GO:0016514 GO:GO:0006337 SUPFAM:SSF47592
GeneTree:ENSGT00390000017809 OMA:TQTRASI EMBL:CU466386
Ensembl:ENSSSCT00000018818 Uniprot:F1RSJ9
Length = 531
Score = 341 (125.1 bits), Expect = 1.1e-30, P = 1.1e-30
Identities = 63/97 (64%), Positives = 79/97 (81%)
Query: 1 SLDNKIHETVETINSLKTNREFFLSFAKDPQQFINKWIISQTRDLKTMTDVVGNPEEERR 60
SLD KIHET+E+IN LKT R+F LSF+ DPQ FI +W+ SQ RDLK +TDV+GNPEEERR
Sbjct: 435 SLDVKIHETIESINQLKTQRDFMLSFSTDPQDFIQEWLRSQRRDLKIITDVIGNPEEERR 494
Query: 61 SDFYYQPWAEEAVCRYFYSKVQQKRAELEQALVYQFT 97
+ FY+QPWA+EAV R+ ++KVQQ+R ELEQ L + T
Sbjct: 495 AAFYHQPWAQEAVGRHIFAKVQQRRQELEQVLGIRLT 531
Score = 175 (66.7 bits), Expect = 1.9e-12, P = 1.9e-12
Identities = 31/45 (68%), Positives = 40/45 (88%)
Query: 98 MTDVVGNPEEERRSDFYYQPWAEEAVCRYFYSKVQQKRAELEQAL 142
+TDV+GNPEEERR+ FY+QPWA+EAV R+ ++KVQQ+R ELEQ L
Sbjct: 482 ITDVIGNPEEERRAAFYHQPWAQEAVGRHIFAKVQQRRQELEQVL 526
>UNIPROTKB|Q6STE5 [details] [associations]
symbol:SMARCD3 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily D member 3"
species:9606 "Homo sapiens" [GO:0003139 "secondary heart field
specification" evidence=IEA] [GO:0003219 "cardiac right ventricle
formation" evidence=IEA] [GO:0042692 "muscle cell differentiation"
evidence=IEA] [GO:0043393 "regulation of protein binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0016514
"SWI/SNF complex" evidence=IDA;NAS] [GO:0008134 "transcription
factor binding" evidence=IPI] [GO:0005102 "receptor binding"
evidence=IPI] [GO:0035257 "nuclear hormone receptor binding"
evidence=IPI] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IDA] [GO:0071565 "nBAF complex"
evidence=ISS] [GO:0071564 "npBAF complex" evidence=ISS;IDA]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0044255 "cellular lipid
metabolic process" evidence=TAS] [GO:0044281 "small molecule
metabolic process" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0003713 "transcription coactivator activity"
evidence=NAS] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=IMP;NAS] [GO:0006337 "nucleosome
disassembly" evidence=IDA] [GO:0006338 "chromatin remodeling"
evidence=IC;IDA] [GO:0030374 "ligand-dependent nuclear receptor
transcription coactivator activity" evidence=IMP] [GO:0016922
"ligand-dependent nuclear receptor binding" evidence=IPI]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0000790 "nuclear
chromatin" evidence=IDA] [GO:0003407 "neural retina development"
evidence=IEP] [GO:0002052 "positive regulation of neuroblast
proliferation" evidence=IDA] Reactome:REACT_111217
InterPro:IPR003121 Pfam:PF02201 GO:GO:0005634 GO:GO:0005737
GO:GO:0045893 GO:GO:0005654 GO:GO:0044281 GO:GO:0043393
GO:GO:0044255 GO:GO:0006357 GO:GO:0006351 EMBL:CH471173
EMBL:AC021097 GO:GO:0006338 GO:GO:0042692 GO:GO:0000790
GO:GO:0003713 GO:GO:0071564 GO:GO:0016514 GO:GO:0003407
GO:GO:0071565 GO:GO:0006337 GO:GO:0002052 GO:GO:0030374
GO:GO:0003139 SUPFAM:SSF47592 GO:GO:0003219 EMBL:AC005486
eggNOG:COG5531 KO:K11650 InterPro:IPR019835 SMART:SM00151
HOVERGEN:HBG054046 EMBL:U66619 EMBL:AY450430 EMBL:AY450431
EMBL:BC002628 EMBL:BC110350 IPI:IPI00106988 IPI:IPI00456146
RefSeq:NP_001003801.1 RefSeq:NP_001003802.1 RefSeq:NP_003069.2
UniGene:Hs.647067 ProteinModelPortal:Q6STE5 SMR:Q6STE5
DIP:DIP-33012N IntAct:Q6STE5 STRING:Q6STE5 PhosphoSite:Q6STE5
DMDM:57013057 PaxDb:Q6STE5 PRIDE:Q6STE5 DNASU:6604
Ensembl:ENST00000262188 Ensembl:ENST00000356800
Ensembl:ENST00000392811 GeneID:6604 KEGG:hsa:6604 UCSC:uc003wjs.3
UCSC:uc003wjt.3 CTD:6604 GeneCards:GC07M150935 HGNC:HGNC:11108
MIM:601737 neXtProt:NX_Q6STE5 PharmGKB:PA35958 InParanoid:Q6STE5
OMA:PLKSQMS OrthoDB:EOG4QFWD6 ChiTaRS:SMARCD3 GenomeRNAi:6604
NextBio:25695 ArrayExpress:Q6STE5 Bgee:Q6STE5 CleanEx:HS_SMARCD3
Genevestigator:Q6STE5 GermOnline:ENSG00000082014 Uniprot:Q6STE5
Length = 483
Score = 338 (124.0 bits), Expect = 1.1e-30, P = 1.1e-30
Identities = 60/97 (61%), Positives = 81/97 (83%)
Query: 1 SLDNKIHETVETINSLKTNREFFLSFAKDPQQFINKWIISQTRDLKTMTDVVGNPEEERR 60
+LD+KIHET+E+IN LK R+F LSF++DP+ ++ + SQ+RDLK MTDV GNPEEERR
Sbjct: 387 ALDSKIHETIESINQLKIQRDFMLSFSRDPKGYVQDLLRSQSRDLKVMTDVAGNPEEERR 446
Query: 61 SDFYYQPWAEEAVCRYFYSKVQQKRAELEQALVYQFT 97
++FY+QPW++EAV RYFY K+QQ+R ELEQ+LV + T
Sbjct: 447 AEFYHQPWSQEAVSRYFYCKIQQRRQELEQSLVVRNT 483
Score = 192 (72.6 bits), Expect = 2.2e-14, P = 2.2e-14
Identities = 33/45 (73%), Positives = 41/45 (91%)
Query: 98 MTDVVGNPEEERRSDFYYQPWAEEAVCRYFYSKVQQKRAELEQAL 142
MTDV GNPEEERR++FY+QPW++EAV RYFY K+QQ+R ELEQ+L
Sbjct: 434 MTDVAGNPEEERRAEFYHQPWSQEAVSRYFYCKIQQRRQELEQSL 478
>MGI|MGI:1914243 [details] [associations]
symbol:Smarcd3 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily d, member 3"
species:10090 "Mus musculus" [GO:0000790 "nuclear chromatin"
evidence=ISO] [GO:0002052 "positive regulation of neuroblast
proliferation" evidence=ISO] [GO:0003007 "heart morphogenesis"
evidence=IMP] [GO:0003139 "secondary heart field specification"
evidence=IMP] [GO:0003219 "cardiac right ventricle formation"
evidence=IMP] [GO:0005102 "receptor binding" evidence=ISO]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0006337
"nucleosome disassembly" evidence=ISO] [GO:0006338 "chromatin
remodeling" evidence=ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=ISO] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006357 "regulation
of transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0007399 "nervous system development" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=ISO] [GO:0016514 "SWI/SNF
complex" evidence=ISO] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0016922 "ligand-dependent nuclear receptor
binding" evidence=ISO] [GO:0030374 "ligand-dependent nuclear
receptor transcription coactivator activity" evidence=ISO]
[GO:0035257 "nuclear hormone receptor binding" evidence=ISO]
[GO:0042692 "muscle cell differentiation" evidence=IMP] [GO:0043393
"regulation of protein binding" evidence=IDA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=ISO;IDA]
[GO:0071564 "npBAF complex" evidence=ISO;IDA] [GO:0071565 "nBAF
complex" evidence=IDA] InterPro:IPR003121 Pfam:PF02201
MGI:MGI:1914243 GO:GO:0005737 GO:GO:0045893 GO:GO:0043393
GO:GO:0006351 GO:GO:0006338 GO:GO:0042692 GO:GO:0000790
GO:GO:0071564 GO:GO:0003407 GO:GO:0071565 GO:GO:0006337
GO:GO:0002052 GO:GO:0030374 GO:GO:0003139 SUPFAM:SSF47592
GO:GO:0003219 eggNOG:COG5531 GeneTree:ENSGT00390000017809
HOGENOM:HOG000240746 KO:K11650 InterPro:IPR019835 SMART:SM00151
HOVERGEN:HBG054046 CTD:6604 OMA:PLKSQMS OrthoDB:EOG4QFWD6
EMBL:AK005094 EMBL:AK019374 EMBL:BC013122 EMBL:BC060525
IPI:IPI00467181 RefSeq:NP_080167.3 UniGene:Mm.436539
ProteinModelPortal:Q6P9Z1 SMR:Q6P9Z1 DIP:DIP-48886N STRING:Q6P9Z1
PhosphoSite:Q6P9Z1 PaxDb:Q6P9Z1 PRIDE:Q6P9Z1
Ensembl:ENSMUST00000030791 GeneID:66993 KEGG:mmu:66993
UCSC:uc008wsd.1 InParanoid:Q6P9Z1 NextBio:323242 Bgee:Q6P9Z1
Genevestigator:Q6P9Z1 GermOnline:ENSMUSG00000028949 Uniprot:Q6P9Z1
Length = 483
Score = 338 (124.0 bits), Expect = 1.1e-30, P = 1.1e-30
Identities = 60/97 (61%), Positives = 81/97 (83%)
Query: 1 SLDNKIHETVETINSLKTNREFFLSFAKDPQQFINKWIISQTRDLKTMTDVVGNPEEERR 60
+LD+KIHET+E+IN LK R+F LSF++DP+ ++ + SQ+RDLK MTDV GNPEEERR
Sbjct: 387 ALDSKIHETIESINQLKIQRDFMLSFSRDPKGYVQDLLRSQSRDLKVMTDVAGNPEEERR 446
Query: 61 SDFYYQPWAEEAVCRYFYSKVQQKRAELEQALVYQFT 97
++FY+QPW++EAV RYFY K+QQ+R ELEQ+LV + T
Sbjct: 447 AEFYHQPWSQEAVSRYFYCKIQQRRQELEQSLVVRNT 483
Score = 192 (72.6 bits), Expect = 2.2e-14, P = 2.2e-14
Identities = 33/45 (73%), Positives = 41/45 (91%)
Query: 98 MTDVVGNPEEERRSDFYYQPWAEEAVCRYFYSKVQQKRAELEQAL 142
MTDV GNPEEERR++FY+QPW++EAV RYFY K+QQ+R ELEQ+L
Sbjct: 434 MTDVAGNPEEERRAEFYHQPWSQEAVSRYFYCKIQQRRQELEQSL 478
>RGD|1311869 [details] [associations]
symbol:Smarcd3 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily d, member 3"
species:10116 "Rattus norvegicus" [GO:0000790 "nuclear chromatin"
evidence=IEA;ISO] [GO:0002052 "positive regulation of neuroblast
proliferation" evidence=IEA;ISO] [GO:0003007 "heart morphogenesis"
evidence=ISO] [GO:0003139 "secondary heart field specification"
evidence=IEA;ISO] [GO:0003219 "cardiac right ventricle formation"
evidence=IEA;ISO] [GO:0003407 "neural retina development"
evidence=IEA;ISO] [GO:0003674 "molecular_function" evidence=ND]
[GO:0005102 "receptor binding" evidence=ISO] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=IEA;ISO] [GO:0006337
"nucleosome disassembly" evidence=IEA;ISO] [GO:0006338 "chromatin
remodeling" evidence=IEA;ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA;ISO] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0008134 "transcription factor binding" evidence=IEA;ISO]
[GO:0008150 "biological_process" evidence=ND] [GO:0016514 "SWI/SNF
complex" evidence=ISO] [GO:0016922 "ligand-dependent nuclear
receptor binding" evidence=IEA;ISO] [GO:0030374 "ligand-dependent
nuclear receptor transcription coactivator activity"
evidence=IEA;ISO] [GO:0035257 "nuclear hormone receptor binding"
evidence=IEA;ISO] [GO:0042692 "muscle cell differentiation"
evidence=IEA;ISO] [GO:0043393 "regulation of protein binding"
evidence=IEA;ISO] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IEA;ISO] [GO:0071564 "npBAF
complex" evidence=IEA;ISO] [GO:0071565 "nBAF complex"
evidence=IEA;ISO] InterPro:IPR003121 Pfam:PF02201 RGD:1311869
EMBL:CH474020 SUPFAM:SSF47592 eggNOG:COG5531
GeneTree:ENSGT00390000017809 HOGENOM:HOG000240746 KO:K11650
InterPro:IPR019835 SMART:SM00151 HOVERGEN:HBG054046 CTD:6604
OrthoDB:EOG4QFWD6 EMBL:BC085349 IPI:IPI00951770
RefSeq:NP_001011966.1 UniGene:Rn.20043 SMR:Q5U3Y2 STRING:Q5U3Y2
Ensembl:ENSRNOT00000066598 GeneID:296732 KEGG:rno:296732
InParanoid:Q5U3Y2 NextBio:641725 Genevestigator:Q5U3Y2
Uniprot:Q5U3Y2
Length = 470
Score = 338 (124.0 bits), Expect = 1.1e-30, P = 1.1e-30
Identities = 60/97 (61%), Positives = 81/97 (83%)
Query: 1 SLDNKIHETVETINSLKTNREFFLSFAKDPQQFINKWIISQTRDLKTMTDVVGNPEEERR 60
+LD+KIHET+E+IN LK R+F LSF++DP+ ++ + SQ+RDLK MTDV GNPEEERR
Sbjct: 374 ALDSKIHETIESINQLKIQRDFMLSFSRDPKGYVQDLLRSQSRDLKVMTDVAGNPEEERR 433
Query: 61 SDFYYQPWAEEAVCRYFYSKVQQKRAELEQALVYQFT 97
++FY+QPW++EAV RYFY K+QQ+R ELEQ+LV + T
Sbjct: 434 AEFYHQPWSQEAVSRYFYCKIQQRRQELEQSLVVRNT 470
Score = 192 (72.6 bits), Expect = 2.1e-14, P = 2.1e-14
Identities = 33/45 (73%), Positives = 41/45 (91%)
Query: 98 MTDVVGNPEEERRSDFYYQPWAEEAVCRYFYSKVQQKRAELEQAL 142
MTDV GNPEEERR++FY+QPW++EAV RYFY K+QQ+R ELEQ+L
Sbjct: 421 MTDVAGNPEEERRAEFYHQPWSQEAVSRYFYCKIQQRRQELEQSL 465
>MGI|MGI:1933621 [details] [associations]
symbol:Smarcd2 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily d, member 2"
species:10090 "Mus musculus" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005634 "nucleus" evidence=IEA] [GO:0006337
"nucleosome disassembly" evidence=ISO] [GO:0006338 "chromatin
remodeling" evidence=ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0016514 "SWI/SNF
complex" evidence=ISO] [GO:0016568 "chromatin modification"
evidence=IEA] InterPro:IPR003121 Pfam:PF02201 MGI:MGI:1933621
GO:GO:0006355 GO:GO:0006351 GO:GO:0006338 GO:GO:0016514
GO:GO:0006337 SUPFAM:SSF47592 EMBL:AL604045
GermOnline:ENSMUSG00000040699 eggNOG:COG5531
GeneTree:ENSGT00390000017809 HOGENOM:HOG000240746 KO:K11650
HOVERGEN:HBG054046 CTD:6603 OMA:TQTRASI OrthoDB:EOG4WQ12P
EMBL:BC005732 IPI:IPI00115461 IPI:IPI00649685 RefSeq:NP_001123659.1
RefSeq:NP_114084.2 UniGene:Mm.21772 ProteinModelPortal:Q99JR8
SMR:Q99JR8 DIP:DIP-58950N IntAct:Q99JR8 STRING:Q99JR8
PhosphoSite:Q99JR8 PaxDb:Q99JR8 PRIDE:Q99JR8 DNASU:83796
Ensembl:ENSMUST00000021052 Ensembl:ENSMUST00000106843 GeneID:83796
KEGG:mmu:83796 InParanoid:B1ARJ6 NextBio:350778 Bgee:Q99JR8
Genevestigator:Q99JR8 Uniprot:Q99JR8
Length = 531
Score = 337 (123.7 bits), Expect = 3.2e-30, P = 3.2e-30
Identities = 62/97 (63%), Positives = 79/97 (81%)
Query: 1 SLDNKIHETVETINSLKTNREFFLSFAKDPQQFINKWIISQTRDLKTMTDVVGNPEEERR 60
SLD KIHET+E+IN LKT R+F LSF+ +PQ FI +W+ SQ RDLK +TDV+GNPEEERR
Sbjct: 435 SLDVKIHETIESINQLKTQRDFMLSFSTEPQDFIQEWLRSQRRDLKIITDVIGNPEEERR 494
Query: 61 SDFYYQPWAEEAVCRYFYSKVQQKRAELEQALVYQFT 97
+ FY+QPWA+EAV R+ ++KVQQ+R ELEQ L + T
Sbjct: 495 AAFYHQPWAQEAVGRHIFAKVQQRRQELEQVLGIRLT 531
Score = 175 (66.7 bits), Expect = 1.9e-12, P = 1.9e-12
Identities = 31/45 (68%), Positives = 40/45 (88%)
Query: 98 MTDVVGNPEEERRSDFYYQPWAEEAVCRYFYSKVQQKRAELEQAL 142
+TDV+GNPEEERR+ FY+QPWA+EAV R+ ++KVQQ+R ELEQ L
Sbjct: 482 ITDVIGNPEEERRAAFYHQPWAQEAVGRHIFAKVQQRRQELEQVL 526
>RGD|69289 [details] [associations]
symbol:Smarcd2 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily d, member 2"
species:10116 "Rattus norvegicus" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0006337 "nucleosome disassembly" evidence=IEA;ISO] [GO:0006338
"chromatin remodeling" evidence=IEA;ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0016514 "SWI/SNF complex"
evidence=IEA;ISO] InterPro:IPR003121 Pfam:PF02201 RGD:69289
GO:GO:0006355 GO:GO:0006351 GO:GO:0006338 GO:GO:0016514
GO:GO:0006337 SUPFAM:SSF47592 eggNOG:COG5531
GeneTree:ENSGT00390000017809 HOGENOM:HOG000240746 KO:K11650
HOVERGEN:HBG054046 CTD:6603 OMA:TQTRASI OrthoDB:EOG4WQ12P
EMBL:AB003504 EMBL:AB003505 EMBL:BC062063 IPI:IPI00198069 PIR:JC6508
RefSeq:NP_114189.1 UniGene:Rn.3053 ProteinModelPortal:O54772
STRING:O54772 PhosphoSite:O54772 Ensembl:ENSRNOT00000014508
GeneID:83833 KEGG:rno:83833 InParanoid:O54772 NextBio:616469
Genevestigator:O54772 GermOnline:ENSRNOG00000010557 Uniprot:O54772
Length = 531
Score = 337 (123.7 bits), Expect = 3.2e-30, P = 3.2e-30
Identities = 62/97 (63%), Positives = 79/97 (81%)
Query: 1 SLDNKIHETVETINSLKTNREFFLSFAKDPQQFINKWIISQTRDLKTMTDVVGNPEEERR 60
SLD KIHET+E+IN LKT R+F LSF+ +PQ FI +W+ SQ RDLK +TDV+GNPEEERR
Sbjct: 435 SLDVKIHETIESINQLKTQRDFMLSFSTEPQDFIQEWLRSQRRDLKIITDVIGNPEEERR 494
Query: 61 SDFYYQPWAEEAVCRYFYSKVQQKRAELEQALVYQFT 97
+ FY+QPWA+EAV R+ ++KVQQ+R ELEQ L + T
Sbjct: 495 AAFYHQPWAQEAVGRHIFAKVQQRRQELEQVLGIRLT 531
Score = 175 (66.7 bits), Expect = 1.9e-12, P = 1.9e-12
Identities = 31/45 (68%), Positives = 40/45 (88%)
Query: 98 MTDVVGNPEEERRSDFYYQPWAEEAVCRYFYSKVQQKRAELEQAL 142
+TDV+GNPEEERR+ FY+QPWA+EAV R+ ++KVQQ+R ELEQ L
Sbjct: 482 ITDVIGNPEEERRAAFYHQPWAQEAVGRHIFAKVQQRRQELEQVL 526
>WB|WBGene00044072 [details] [associations]
symbol:ham-3 species:6239 "Caenorhabditis elegans"
[GO:0040011 "locomotion" evidence=IMP] [GO:0040035 "hermaphrodite
genitalia development" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0040010 "positive
regulation of growth rate" evidence=IMP] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0010171 "body morphogenesis" evidence=IMP] [GO:0007413 "axonal
fasciculation" evidence=IMP] [GO:0006898 "receptor-mediated
endocytosis" evidence=IMP] [GO:0006915 "apoptotic process"
evidence=IMP] [GO:0070603 "SWI/SNF superfamily-type complex"
evidence=ISS] [GO:0001085 "RNA polymerase II transcription factor
binding" evidence=ISS] [GO:0006357 "regulation of transcription
from RNA polymerase II promoter" evidence=ISS] [GO:0005634
"nucleus" evidence=IDA] InterPro:IPR003121 Pfam:PF02201
GO:GO:0009792 GO:GO:0006898 GO:GO:0040007 GO:GO:0040010
GO:GO:0006915 GO:GO:0002119 GO:GO:0010171 GO:GO:0040011
GO:GO:0006357 GO:GO:0040035 GO:GO:0007413 GO:GO:0001085
SUPFAM:SSF47592 EMBL:Z47357 eggNOG:COG5531
GeneTree:ENSGT00390000017809 HOGENOM:HOG000240746 KO:K11650
InterPro:IPR019835 SMART:SM00151 OMA:MRFMEIP GO:GO:0070603
PIR:T27696 RefSeq:NP_499250.1 ProteinModelPortal:Q09646 SMR:Q09646
STRING:Q09646 PaxDb:Q09646 EnsemblMetazoa:ZK1128.5 GeneID:176426
KEGG:cel:CELE_ZK1128.5 UCSC:ZK1128.5 CTD:176426 WormBase:ZK1128.5
InParanoid:Q09646 NextBio:892530 Uniprot:Q09646
Length = 446
Score = 238 (88.8 bits), Expect = 1.6e-19, P = 1.6e-19
Identities = 45/91 (49%), Positives = 61/91 (67%)
Query: 2 LDNKIHETVETINSLKTNREFFLSFAKDPQQFINKWIISQTRDLKTMTDVVGNPEEERRS 61
LD KI + V+ IN +K R+FFL F+ +P FI KW++SQ DLKT+T+ G+ E +R +
Sbjct: 351 LDQKIFDLVDQINEMKLRRDFFLRFSNEPSGFIKKWVVSQNSDLKTLTESSGDGESDRYA 410
Query: 62 DFYYQPWAEEAVCRYFYSKVQQKRAELEQAL 92
Y +E V RY Y K+QQKRAELEQ+L
Sbjct: 411 TTYSTTDTDEGVSRYMYQKIQQKRAELEQSL 441
Score = 107 (42.7 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 22/46 (47%), Positives = 30/46 (65%)
Query: 97 TMTDVVGNPEEERRSDFYYQPWAEEAVCRYFYSKVQQKRAELEQAL 142
T+T+ G+ E +R + Y +E V RY Y K+QQKRAELEQ+L
Sbjct: 396 TLTESSGDGESDRYATTYSTTDTDEGVSRYMYQKIQQKRAELEQSL 441
>WB|WBGene00015971 [details] [associations]
symbol:swsn-2.2 species:6239 "Caenorhabditis elegans"
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0070603 "SWI/SNF superfamily-type
complex" evidence=ISS] [GO:0001085 "RNA polymerase II transcription
factor binding" evidence=ISS] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
InterPro:IPR003121 Pfam:PF02201 GO:GO:0009792 GO:GO:0040007
GO:GO:0002119 GO:GO:0006357 GO:GO:0040035 GO:GO:0001085
SUPFAM:SSF47592 EMBL:FO080611 eggNOG:COG5531
GeneTree:ENSGT00390000017809 HOGENOM:HOG000240746 KO:K11650
InterPro:IPR019835 SMART:SM00151 OMA:TDKNIPD PIR:T15185
RefSeq:NP_491329.2 ProteinModelPortal:O02101 SMR:O02101
MINT:MINT-6668665 STRING:O02101 PaxDb:O02101
EnsemblMetazoa:C18E3.2.1 EnsemblMetazoa:C18E3.2.2
EnsemblMetazoa:C18E3.2.3 GeneID:172018 KEGG:cel:CELE_C18E3.2
UCSC:C18E3.2.2 CTD:172018 WormBase:C18E3.2 InParanoid:O02101
NextBio:873681 GO:GO:0070603 Uniprot:O02101
Length = 449
Score = 234 (87.4 bits), Expect = 4.6e-19, P = 4.6e-19
Identities = 44/92 (47%), Positives = 62/92 (67%)
Query: 1 SLDNKIHETVETINSLKTNREFFLSFAKDPQQFINKWIISQTRDLKTMTDVVGNPEEERR 60
+LD K ++ +E IN LKT R+F+ F +P +FI W++SQ DLKTM ++ G+ E ER
Sbjct: 353 TLDQKCYDIIEQINELKTRRDFYARFYTEPAEFIKSWVMSQNSDLKTMNELSGDLEAERF 412
Query: 61 SDFYYQPWAEEAVCRYFYSKVQQKRAELEQAL 92
++ Y +P EE V RY + KV QKR ELEQ+L
Sbjct: 413 AESYVRPETEEGVQRYMFQKVNQKRHELEQSL 444
Score = 135 (52.6 bits), Expect = 2.9e-08, P = 2.9e-08
Identities = 41/123 (33%), Positives = 68/123 (55%)
Query: 28 KDP-QQFINKWIISQ--TRDLKTMT----DVVGNPEE-ERRSDFYYQPWAEEAVCRYFYS 79
+DP +QF++ ++ S D++T+ D++ E + R DFY + + E A + S
Sbjct: 331 EDPVKQFMHTFVHSPGLANDIQTLDQKCYDIIEQINELKTRRDFYARFYTEPA--EFIKS 388
Query: 80 KVQQKRAELEQALVYQFTMTDVVGNPEEERRSDFYYQPWAEEAVCRYFYSKVQQKRAELE 139
V + ++L+ TM ++ G+ E ER ++ Y +P EE V RY + KV QKR ELE
Sbjct: 389 WVMSQNSDLK-------TMNELSGDLEAERFAESYVRPETEEGVQRYMFQKVNQKRHELE 441
Query: 140 QAL 142
Q+L
Sbjct: 442 QSL 444
>TAIR|locus:2174638 [details] [associations]
symbol:CHC1 "AT5G14170" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0048364 "root development"
evidence=IMP] [GO:0006281 "DNA repair" evidence=IMP] [GO:0010224
"response to UV-B" evidence=IEP] [GO:0000956 "nuclear-transcribed
mRNA catabolic process" evidence=RCA] [GO:0008284 "positive
regulation of cell proliferation" evidence=RCA] InterPro:IPR003121
Pfam:PF02201 GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0006355 GO:GO:0006281 GO:GO:0006351 GO:GO:0016568
EMBL:AB007650 GO:GO:0048364 GO:GO:0010224 SUPFAM:SSF47592
eggNOG:COG5531 HOGENOM:HOG000240746 KO:K11650 OMA:NTFYPSK
EMBL:BT008892 EMBL:AY065106 IPI:IPI00539458 RefSeq:NP_196921.1
UniGene:At.6512 PDB:1V31 PDBsum:1V31 ProteinModelPortal:Q9FMT4
SMR:Q9FMT4 IntAct:Q9FMT4 STRING:Q9FMT4 PaxDb:Q9FMT4 PRIDE:Q9FMT4
EnsemblPlants:AT5G14170.1 GeneID:831267 KEGG:ath:AT5G14170
TAIR:At5g14170 InParanoid:Q9FMT4 PhylomeDB:Q9FMT4
ProtClustDB:CLSN2687209 EvolutionaryTrace:Q9FMT4
Genevestigator:Q9FMT4 GermOnline:AT5G14170 Uniprot:Q9FMT4
Length = 534
Score = 167 (63.8 bits), Expect = 1.4e-11, P = 1.4e-11
Identities = 34/75 (45%), Positives = 46/75 (61%)
Query: 3 DNKIHETVETINSLKTNREFFLSFAKDPQQFINKWIISQTRDLKTMT-DVVGNPEEERRS 61
D I + I+ + R FFL F++ P +FIN I SQ++DLK + + N E ERRS
Sbjct: 445 DEAICAAIRKIHEHRRRRAFFLGFSQSPVEFINALIESQSKDLKVVAGEASRNAERERRS 504
Query: 62 DFYYQPWAEEAVCRY 76
DF+ QPW E+AV RY
Sbjct: 505 DFFNQPWVEDAVIRY 519
>POMBASE|SPAC23G3.10c [details] [associations]
symbol:ssr3 "SWI/SNF and RSC complex subunit Ssr3"
species:4896 "Schizosaccharomyces pombe" [GO:0000790 "nuclear
chromatin" evidence=IC] [GO:0000991 "core RNA polymerase II binding
transcription factor activity" evidence=ISO] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0006338
"chromatin remodeling" evidence=ISO] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=IC]
[GO:0016514 "SWI/SNF complex" evidence=IDA] [GO:0016586 "RSC
complex" evidence=IDA] InterPro:IPR003121 Pfam:PF02201
PomBase:SPAC23G3.10c GO:GO:0005829 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0006357 GO:GO:0006338 GO:GO:0000790
GO:GO:0016514 GO:GO:0016586 GO:GO:0000991 SUPFAM:SSF47592
eggNOG:COG5531 OrthoDB:EOG4N8VDJ KO:K11650 OMA:PLKSQMS PIR:T50184
RefSeq:NP_593110.1 HSSP:Q61466 ProteinModelPortal:Q9P7S3
DIP:DIP-48385N STRING:Q9P7S3 EnsemblFungi:SPAC23G3.10c.1
GeneID:2541438 KEGG:spo:SPAC23G3.10c NextBio:20802540
Uniprot:Q9P7S3
Length = 425
Score = 159 (61.0 bits), Expect = 6.5e-11, P = 6.5e-11
Identities = 33/87 (37%), Positives = 52/87 (59%)
Query: 1 SLDNKIHETVETINSLKTNREFFLSFAKDPQQFINKWIISQTRDLKTMTDVVG-NPEEER 59
S+D+K+ E ++ I ++ +F F++ P +FIN+WI SQ+RDL+ + D N E+R
Sbjct: 330 SIDDKLTELIQAITYSQSKYDFMKKFSESPIEFINEWIESQSRDLEIVLDGTNMNYAEKR 389
Query: 60 RSDFYYQPWAEEAVCRYFY---SKVQQ 83
+D+Y QPW E+ Y SK QQ
Sbjct: 390 SADYYQQPWVHESAFHYLNLLNSKKQQ 416
>TAIR|locus:2078713 [details] [associations]
symbol:AT3G01890 "AT3G01890" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR003121 Pfam:PF02201 EMBL:CP002686
GenomeReviews:BA000014_GR SUPFAM:SSF47592 eggNOG:COG5531
HOGENOM:HOG000240746 KO:K11650 ProtClustDB:CLSN2687209
EMBL:BT026139 IPI:IPI00520994 RefSeq:NP_566154.2 UniGene:At.45849
ProteinModelPortal:Q147F4 SMR:Q147F4 EnsemblPlants:AT3G01890.1
GeneID:820093 KEGG:ath:AT3G01890 TAIR:At3g01890 InParanoid:Q147F4
OMA:PAISACY PhylomeDB:Q147F4 Genevestigator:Q147F4 Uniprot:Q147F4
Length = 458
Score = 149 (57.5 bits), Expect = 9.2e-10, P = 9.2e-10
Identities = 31/79 (39%), Positives = 45/79 (56%)
Query: 3 DNKIHETVETINSLKTNREFFLSFAKDPQQFINKWIISQTRDLKTMT-DVVGNPEEERRS 61
D I + I+ + R FFL F++ P +F N + SQT+DLK + + N E+E RS
Sbjct: 376 DEAICGAIRKIHEHRRRRAFFLGFSQSPVEFTNALMESQTKDLKLVAGEASRNAEKEGRS 435
Query: 62 DFYYQPWAEEAVCRYFYSK 80
+F+ QPW E+A RY K
Sbjct: 436 EFFNQPWVEDAAIRYLNRK 454
>WB|WBGene00010523 [details] [associations]
symbol:K03B8.4 species:6239 "Caenorhabditis elegans"
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] GO:GO:0009792
GO:GO:0040007 GO:GO:0002119 EMBL:Z74039 eggNOG:COG5531 PIR:T23262
RefSeq:NP_505890.1 UniGene:Cel.34469 STRING:Q21177 PaxDb:Q21177
EnsemblMetazoa:K03B8.4 GeneID:186925 KEGG:cel:CELE_K03B8.4
UCSC:K03B8.4 CTD:186925 WormBase:K03B8.4 NextBio:933480
Uniprot:Q21177
Length = 96
Score = 139 (54.0 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 29/56 (51%), Positives = 38/56 (67%)
Query: 39 ISQTRDLKTMTDVVGNPEEERRSDFYYQPWAEEAVCRYFYSKVQQKRAELEQALVY 94
+SQ DLKTM ++ G+ E ER ++ Y +P EE V RY + KV QKR ELEQ LV+
Sbjct: 1 MSQNSDLKTMNELSGDLEAERFAESYVRPETEEGVQRYMFQKVNQKRHELEQILVF 56
Score = 108 (43.1 bits), Expect = 2.6e-06, P = 2.6e-06
Identities = 23/46 (50%), Positives = 30/46 (65%)
Query: 97 TMTDVVGNPEEERRSDFYYQPWAEEAVCRYFYSKVQQKRAELEQAL 142
TM ++ G+ E ER ++ Y +P EE V RY + KV QKR ELEQ L
Sbjct: 9 TMNELSGDLEAERFAESYVRPETEEGVQRYMFQKVNQKRHELEQIL 54
>DICTYBASE|DDB_G0273725 [details] [associations]
symbol:snf12-2 "SWI/SNF protein SNF12" species:44689
"Dictyostelium discoideum" [GO:0008150 "biological_process"
evidence=ND] [GO:0003674 "molecular_function" evidence=ND]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005654
"nucleoplasm" evidence=IDA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR003121 Pfam:PF02201
dictyBase:DDB_G0273725 dictyBase:DDB_G0273203 GO:GO:0005654
GO:GO:0006355 GenomeReviews:CM000151_GR GO:GO:0006351 GO:GO:0016568
EMBL:AAFI02000011 EMBL:AAFI02000009 SUPFAM:SSF47592 eggNOG:COG5531
KO:K11650 RefSeq:XP_644479.1 RefSeq:XP_644771.1
ProteinModelPortal:Q556Z0 PRIDE:Q556Z0 EnsemblProtists:DDB0233489
EnsemblProtists:DDB0266583 GeneID:8618873 GeneID:8619103
KEGG:ddi:DDB_G0273203 KEGG:ddi:DDB_G0273725 OMA:MRFMEIP
ProtClustDB:CLSZ2428982 Uniprot:Q556Z0
Length = 456
Score = 112 (44.5 bits), Expect = 9.1e-06, P = 9.1e-06
Identities = 24/76 (31%), Positives = 37/76 (48%)
Query: 2 LDNKIHETVETINSLKTNREFFLSFAKDPQQFINKWIISQTRDLKTMTDVVGNP-EEERR 60
L+++I+ ++ + K REF + DP F+N + +D + EEER
Sbjct: 357 LNDEINHHIQKVYQHKRKREFMEKLSSDPLGFLNDTTANLVKDFQVSKSTTSTGFEEERH 416
Query: 61 SDFYYQPWAEEAVCRY 76
+ FYYQP EE V Y
Sbjct: 417 ASFYYQPMTEELVKNY 432
>DICTYBASE|DDB_G0273203 [details] [associations]
symbol:snf12-1 "SWI/SNF protein SNF12" species:44689
"Dictyostelium discoideum" [GO:0008150 "biological_process"
evidence=ND] [GO:0003674 "molecular_function" evidence=ND]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005654
"nucleoplasm" evidence=IDA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR003121 Pfam:PF02201
dictyBase:DDB_G0273725 dictyBase:DDB_G0273203 GO:GO:0005654
GO:GO:0006355 GenomeReviews:CM000151_GR GO:GO:0006351 GO:GO:0016568
EMBL:AAFI02000011 EMBL:AAFI02000009 SUPFAM:SSF47592 eggNOG:COG5531
KO:K11650 RefSeq:XP_644479.1 RefSeq:XP_644771.1
ProteinModelPortal:Q556Z0 PRIDE:Q556Z0 EnsemblProtists:DDB0233489
EnsemblProtists:DDB0266583 GeneID:8618873 GeneID:8619103
KEGG:ddi:DDB_G0273203 KEGG:ddi:DDB_G0273725 OMA:MRFMEIP
ProtClustDB:CLSZ2428982 Uniprot:Q556Z0
Length = 456
Score = 112 (44.5 bits), Expect = 9.1e-06, P = 9.1e-06
Identities = 24/76 (31%), Positives = 37/76 (48%)
Query: 2 LDNKIHETVETINSLKTNREFFLSFAKDPQQFINKWIISQTRDLKTMTDVVGNP-EEERR 60
L+++I+ ++ + K REF + DP F+N + +D + EEER
Sbjct: 357 LNDEINHHIQKVYQHKRKREFMEKLSSDPLGFLNDTTANLVKDFQVSKSTTSTGFEEERH 416
Query: 61 SDFYYQPWAEEAVCRY 76
+ FYYQP EE V Y
Sbjct: 417 ASFYYQPMTEELVKNY 432
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.318 0.131 0.388 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 142 142 0.00091 102 3 11 22 0.44 31
30 0.47 33
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 29
No. of states in DFA: 571 (61 KB)
Total size of DFA: 138 KB (2084 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 15.31u 0.08s 15.39t Elapsed: 00:00:05
Total cpu time: 15.32u 0.08s 15.40t Elapsed: 00:00:05
Start: Thu Aug 15 11:24:01 2013 End: Thu Aug 15 11:24:06 2013