RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy9692
         (142 letters)



>gnl|CDD|184005 PRK13366, PRK13366, protocatechuate 4,5-dioxygenase subunit beta;
           Provisional.
          Length = 284

 Score = 25.9 bits (57), Expect = 9.2
 Identities = 13/37 (35%), Positives = 20/37 (54%)

Query: 87  ELEQALVYQFTMTDVVGNPEEERRSDFYYQPWAEEAV 123
           EL   L+ +  M+DV G P+ +    FY+ P +  AV
Sbjct: 240 ELVMWLIARGAMSDVAGGPKPKVAHRFYHVPASNTAV 276


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.318    0.131    0.388 

Gapped
Lambda     K      H
   0.267   0.0767    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 7,396,248
Number of extensions: 655825
Number of successful extensions: 557
Number of sequences better than 10.0: 1
Number of HSP's gapped: 557
Number of HSP's successfully gapped: 19
Length of query: 142
Length of database: 10,937,602
Length adjustment: 87
Effective length of query: 55
Effective length of database: 7,078,804
Effective search space: 389334220
Effective search space used: 389334220
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (24.5 bits)