RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9692
(142 letters)
>3rki_A Fusion glycoprotein F0; fusion protein, viral protein; HET: NAG;
3.20A {Human respiratory syncytial virus}
Length = 528
Score = 28.4 bits (62), Expect = 0.97
Identities = 7/46 (15%), Positives = 17/46 (36%)
Query: 1 SLDNKIHETVETINSLKTNREFFLSFAKDPQQFINKWIISQTRDLK 46
+ + + T + + SL S D + +I+K ++
Sbjct: 157 KIKSALLSTNKAVVSLSNGVSVLTSKVLDLKNYIDKQLLPIVNKQS 202
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 28.1 bits (62), Expect = 1.1
Identities = 12/37 (32%), Positives = 16/37 (43%), Gaps = 6/37 (16%)
Query: 77 FY--SKVQQK---RAELEQALVYQFTMTDVV-GNPEE 107
Y SK Q RA+ Y F++ D+V NP
Sbjct: 1635 LYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVN 1671
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein
struct initiative, northeast structural genomics
consortium, NESG, function; 2.40A {Bacillus halodurans}
SCOP: c.37.1.25
Length = 189
Score = 27.2 bits (60), Expect = 1.5
Identities = 8/28 (28%), Positives = 12/28 (42%)
Query: 3 DNKIHETVETINSLKTNREFFLSFAKDP 30
+ + + +LKTN F A DP
Sbjct: 154 HLQPTNLNDIVKNLKTNPRFIFCMAGDP 181
>2pef_A Serine protease inhibitor; serpin; 1.60A {Thermoanaerobacter
tengcongensis} PDB: 2vh4_A 2pee_A
Length = 373
Score = 27.5 bits (62), Expect = 1.7
Identities = 7/35 (20%), Positives = 14/35 (40%), Gaps = 6/35 (17%)
Query: 16 LKTNREFF------LSFAKDPQQFINKWIISQTRD 44
L+ +++ +F IN W+ S+T
Sbjct: 109 LQIIADYYKADIFKAAFDSSTVSDINNWVKSKTNG 143
>1ztm_A Fusion glycoprotein; fusion protein, 6-helix bundle,trimer,
post-fusion, viral PR; HET: NAG; 3.05A {Human
parainfluenza virus 3}
Length = 490
Score = 27.0 bits (59), Expect = 2.7
Identities = 10/46 (21%), Positives = 21/46 (45%)
Query: 1 SLDNKIHETVETINSLKTNREFFLSFAKDPQQFINKWIISQTRDLK 46
L I +T + + S++++ + K Q ++NK I+ L
Sbjct: 128 KLKEAIRDTNKAVQSVQSSIGNLIVAIKSVQDYVNKEIVPSIARLG 173
>1knv_A BSE634I restriction endonuclease; APO-enzyme, hydrolase; 2.17A
{Geobacillus stearothermophilus} SCOP: c.52.1.7 PDB:
3v1z_A* 3v20_A* 3v21_A*
Length = 293
Score = 26.5 bits (57), Expect = 3.5
Identities = 6/49 (12%), Positives = 19/49 (38%)
Query: 60 RSDFYYQPWAEEAVCRYFYSKVQQKRAELEQALVYQFTMTDVVGNPEEE 108
R D Q E + + ++ ++ + + Y ++ V +++
Sbjct: 202 RPDRRLQLVHEGNILKSLFAHLKMRYWNPKAEFKYYGASSEPVSKADDD 250
>3nda_A Serpin-2; vaccination target, TICK, hydrolase inhibitor; HET: 1PE;
1.80A {Ixodes ricinus}
Length = 377
Score = 26.4 bits (59), Expect = 4.1
Identities = 10/38 (26%), Positives = 16/38 (42%), Gaps = 9/38 (23%)
Query: 16 LKTNREFF------LSFAKDPQ---QFINKWIISQTRD 44
+ F + FA +PQ F+N W+ +T D
Sbjct: 111 ESALQSSFGAELHKVDFAGEPQAAVDFVNNWVKRKTHD 148
>1lla_A Hemocyanin (subunit type II); oxygen transport; 2.18A {Limulus
polyphemus} SCOP: a.85.1.1 a.86.1.1 b.1.18.3 PDB: 1nol_A
1ll1_A 1oxy_A
Length = 628
Score = 26.4 bits (58), Expect = 4.5
Identities = 13/86 (15%), Positives = 24/86 (27%)
Query: 30 PQQFINKWIISQTRDLKTMTDVVGNPEEERRSDFYYQPWAEEAVCRYFYSKVQQKRAELE 89
P +FI I++ + E Y+ V
Sbjct: 116 PDKFIPSAAINEAFKKAHVRPEFDESPILVDVQDTGNILDPEYRLAYYREDVGINAHHWH 175
Query: 90 QALVYQFTMTDVVGNPEEERRSDFYY 115
LVY T +++R+ + +Y
Sbjct: 176 WHLVYPSTWNPKYFGKKKDRKGELFY 201
>1sng_A COG4826: serine protease inhibitor; serine protease inhibitor
(serpin), native state., hydrolase inhibitor; 1.76A
{Thermobifida fusca} SCOP: e.1.1.1
Length = 370
Score = 26.1 bits (58), Expect = 4.9
Identities = 7/39 (17%), Positives = 12/39 (30%), Gaps = 9/39 (23%)
Query: 16 LKTNREFF------LSFAKDPQ---QFINKWIISQTRDL 45
T + F +P+ +N I TR +
Sbjct: 104 RATMHDRPDSDVRTADFRTNPEGVRATVNADIADATRGM 142
>2b9b_A Fusion glycoprotein F0; fusion protein, PRE-fusion conformation,
viral protein; HET: NAG; 2.85A {Simian virus 5}
Length = 497
Score = 26.2 bits (57), Expect = 5.2
Identities = 7/46 (15%), Positives = 15/46 (32%)
Query: 1 SLDNKIHETVETINSLKTNREFFLSFAKDPQQFINKWIISQTRDLK 46
+L N I +T + + + + + Q IN +
Sbjct: 118 NLKNAIQKTNAAVADVVQATQSLGTAVQAVQDHINSVVSPAITAAN 163
>1yo5_C SAM pointed domain containing ETS transcription factor;
protein-DNA complex, double helix, transcription/DNA
complex; 2.00A {Homo sapiens} SCOP: a.4.5.21
Length = 97
Score = 25.0 bits (54), Expect = 5.6
Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Query: 60 RSDFYYQPWAEEAVCRYFYSKVQQKRAELEQALVYQF 96
R Y + R +Y K ++ ++ Q LVYQF
Sbjct: 59 RPAMNYDKLSRS--IRQYYKKGIIRKPDISQRLVYQF 93
>4dag_A Fusion glycoprotein F0; viral protein, MPV fusion protein, immune
system, antibody structure, FAB structure, vaccine; HET:
NAG BMA MAN; 3.39A {Human metapneumovirus}
Length = 415
Score = 25.9 bits (56), Expect = 5.7
Identities = 7/46 (15%), Positives = 21/46 (45%)
Query: 1 SLDNKIHETVETINSLKTNREFFLSFAKDPQQFINKWIISQTRDLK 46
++ + T E +++L + ++ ++F++K + S K
Sbjct: 119 AIKGALKTTNEAVSTLGNGVRVLATAVRELKEFVSKNLTSAINKNK 164
>1g5g_A Fusion protein; NDV, paramyxovirus; HET: NAG BMA; 3.30A {Newcastle
disease virus} SCOP: f.12.1.1 h.3.2.1 PDB: 3maw_A*
Length = 481
Score = 25.8 bits (56), Expect = 5.9
Identities = 9/46 (19%), Positives = 15/46 (32%)
Query: 1 SLDNKIHETVETINSLKTNREFFLSFAKDPQQFINKWIISQTRDLK 46
L I T E ++ + QQF+N ++L
Sbjct: 122 RLKESIAATNEAVHEVTNGLSQLAVAVGKMQQFVNDQFNKTAQELD 167
>3hhs_A Propo-P2, phenoloxidase subunit 2; alpha helix, beta strand,
melanin biosynthesis, metal-bindin monooxygenase,
oxidoreductase, secreted; 1.97A {Manduca sexta}
Length = 694
Score = 25.7 bits (56), Expect = 6.6
Identities = 16/88 (18%), Positives = 31/88 (35%), Gaps = 1/88 (1%)
Query: 30 PQQFINKWIISQTRDLKTMTDVVGNPE-EERRSDFYYQPWAEEAVCRYFYSKVQQKRAEL 88
P +F++ + +Q R+ + D+ EE Y+ +
Sbjct: 156 PAKFLDSQVFTQAREAAAVIPKTIPRTPIIIPRDYTATDLEEEHRLAYWREDLGINLHHW 215
Query: 89 EQALVYQFTMTDVVGNPEEERRSDFYYQ 116
LVY F+ +D ++ R F+Y
Sbjct: 216 HWHLVYPFSASDEKIVAKDRRGELFFYM 243
>1mtp_A Serine proteinase inhibitor (serpin), chain A; structural genomics,
protease inhibitor; 1.50A {Thermobifida fusca} SCOP:
e.1.1.1
Length = 323
Score = 25.6 bits (57), Expect = 7.3
Identities = 7/39 (17%), Positives = 12/39 (30%), Gaps = 9/39 (23%)
Query: 16 LKTNREFF------LSFAKDPQ---QFINKWIISQTRDL 45
T + F +P+ +N I TR +
Sbjct: 100 RATMHDRPDSDVRTADFRTNPEGVRATVNADIADATRGM 138
>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann
fold catalytical domain, recognition domain, bound
Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP:
a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A*
2quk_A
Length = 477
Score = 25.3 bits (55), Expect = 8.5
Identities = 6/30 (20%), Positives = 11/30 (36%)
Query: 81 VQQKRAELEQALVYQFTMTDVVGNPEEERR 110
Q +R E+ +V +F + E
Sbjct: 445 HQARRKEVTDEIVKEFMTPRKLAAALEHHH 474
>2zv6_A Serpin B3; serine proteinase inhibitor, reactive site loop,
acetylation, alternative splicing, cytoplasm,
polymorphism, protease inhibitor; 2.70A {Homo sapiens}
Length = 401
Score = 25.0 bits (55), Expect = 9.8
Identities = 11/38 (28%), Positives = 19/38 (50%), Gaps = 9/38 (23%)
Query: 16 LKTNREFF------LSFAKDPQ---QFINKWIISQTRD 44
L ++F+ + FA P+ + IN W+ SQT +
Sbjct: 131 LDAIKKFYQTSVESVDFANAPEESRKKINSWVESQTNE 168
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.131 0.388
Gapped
Lambda K H
0.267 0.0529 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,238,016
Number of extensions: 121609
Number of successful extensions: 310
Number of sequences better than 10.0: 1
Number of HSP's gapped: 310
Number of HSP's successfully gapped: 49
Length of query: 142
Length of database: 6,701,793
Length adjustment: 84
Effective length of query: 58
Effective length of database: 4,356,429
Effective search space: 252672882
Effective search space used: 252672882
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.3 bits)