RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy9692
         (142 letters)



>d2ns1b1 d.58.5.1 (B:1-112) PII-homolog GlnK {Shigella flexneri
           [TaxId: 623]}
          Length = 112

 Score = 25.2 bits (55), Expect = 1.8
 Identities = 9/44 (20%), Positives = 20/44 (45%), Gaps = 2/44 (4%)

Query: 71  EAVCRYFYSKVQQKRAELEQALVYQFTMTDVVGNPEEERRSDFY 114
             + + F  K++  R  L    +   T+T+V G   ++  ++ Y
Sbjct: 5   TVIIKPF--KLEDVREALSSIGIQGLTVTEVKGFGRQKGHAELY 46


>d1yo5c1 a.4.5.21 (C:247-334) Sam pointed domain containing ets
          transcription SPDEF {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 88

 Score = 24.4 bits (53), Expect = 2.6
 Identities = 9/22 (40%), Positives = 14/22 (63%)

Query: 75 RYFYSKVQQKRAELEQALVYQF 96
          R +Y K   ++ ++ Q LVYQF
Sbjct: 64 RQYYKKGIIRKPDISQRLVYQF 85


>d1qy7a_ d.58.5.1 (A:) PII (product of glnB) {Cyanobacteria
           (Synechococcus sp.) pcc 7942 [TaxId: 1131]}
          Length = 112

 Score = 24.4 bits (53), Expect = 3.8
 Identities = 11/44 (25%), Positives = 24/44 (54%), Gaps = 2/44 (4%)

Query: 71  EAVCRYFYSKVQQKRAELEQALVYQFTMTDVVGNPEEERRSDFY 114
           EA+ R F  K+ + +  L  A +   T+++V G   ++ +++ Y
Sbjct: 5   EAIIRPF--KLDEVKIALVNAGIVGMTVSEVRGFGRQKGQTERY 46


>d1llaa2 a.86.1.1 (A:110-379) Arthropod hemocyanin {Horseshoe crab
           (Limulus polyphemus) [TaxId: 6850]}
          Length = 270

 Score = 24.3 bits (53), Expect = 5.9
 Identities = 13/86 (15%), Positives = 24/86 (27%)

Query: 30  PQQFINKWIISQTRDLKTMTDVVGNPEEERRSDFYYQPWAEEAVCRYFYSKVQQKRAELE 89
           P +FI    I++      +                      E    Y+   V        
Sbjct: 7   PDKFIPSAAINEAFKKAHVRPEFDESPILVDVQDTGNILDPEYRLAYYREDVGINAHHWH 66

Query: 90  QALVYQFTMTDVVGNPEEERRSDFYY 115
             LVY  T        +++R+ + +Y
Sbjct: 67  WHLVYPSTWNPKYFGKKKDRKGELFY 92


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.131    0.388 

Gapped
Lambda     K      H
   0.267   0.0633    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 553,266
Number of extensions: 24700
Number of successful extensions: 62
Number of sequences better than 10.0: 1
Number of HSP's gapped: 62
Number of HSP's successfully gapped: 10
Length of query: 142
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 65
Effective length of database: 1,350,386
Effective search space: 87775090
Effective search space used: 87775090
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (22.5 bits)