BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9695
(159 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
pdb|2I13|B Chain B, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
Length = 190
Score = 83.6 bits (205), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 61/107 (57%), Gaps = 3/107 (2%)
Query: 15 GMPKHLCHVCHKNFSSSSALQIHMRTHTGDKPFRCTICQKAFTTKGNLKLIPNAVFNVAG 74
G + C C K+FS L H RTHTG+KP++C C K+F+ + NL+ G
Sbjct: 46 GEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQR---THTG 102
Query: 75 MPKHLCHVCHKNFSSSSALQIHMRTHTGDKPFRCTICQKAFTTKGNL 121
+ C C K+FS + L+ H RTHTG+KP++C C K+F+ + NL
Sbjct: 103 EKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNL 149
Score = 79.3 bits (194), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 42/109 (38%), Positives = 60/109 (55%), Gaps = 3/109 (2%)
Query: 15 GMPKHLCHVCHKNFSSSSALQIHMRTHTGDKPFRCTICQKAFTTKGNLKLIPNAVFNVAG 74
G + C C K+FS S L H RTHTG+KP++C C K+F+ K +L G
Sbjct: 18 GEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLT---RHQRTHTG 74
Query: 75 MPKHLCHVCHKNFSSSSALQIHMRTHTGDKPFRCTICQKAFTTKGNLKV 123
+ C C K+FS + L+ H RTHTG+KP+ C C K+F+ +L+
Sbjct: 75 EKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRA 123
Score = 78.6 bits (192), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 41/109 (37%), Positives = 59/109 (54%), Gaps = 3/109 (2%)
Query: 15 GMPKHLCHVCHKNFSSSSALQIHMRTHTGDKPFRCTICQKAFTTKGNLKLIPNAVFNVAG 74
G + C C K+FS + L+ H RTHTG+KP+ C C K+F+ +L+ G
Sbjct: 74 GEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQR---THTG 130
Query: 75 MPKHLCHVCHKNFSSSSALQIHMRTHTGDKPFRCTICQKAFTTKGNLKV 123
+ C C K+FS L H RTHTG+KP++C C K+F+ + L V
Sbjct: 131 EKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNV 179
Score = 66.2 bits (160), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 49/90 (54%), Gaps = 3/90 (3%)
Query: 15 GMPKHLCHVCHKNFSSSSALQIHMRTHTGDKPFRCTICQKAFTTKGNLKLIPNAVFNVAG 74
G + C C K+FS + L+ H RTHTG+KP++C C K+F+ + NL G
Sbjct: 102 GEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQR---THTG 158
Query: 75 MPKHLCHVCHKNFSSSSALQIHMRTHTGDK 104
+ C C K+FS AL +H RTHTG K
Sbjct: 159 EKPYKCPECGKSFSRRDALNVHQRTHTGKK 188
>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain
Repeats Of Murine Gli-Kruppel Family Member Hkr3
Length = 124
Score = 78.2 bits (191), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 62/113 (54%), Gaps = 4/113 (3%)
Query: 21 CHVCHKNFSSSSALQIHMRTHTGDKPFRCTICQKAFTTKGNLKLIPNAVFNVAGMPKHL- 79
C CHK F S L++H R HTG+KPF C C K + K N L+ + N + +
Sbjct: 10 CPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKEN--LLEHEARNCMNRSEQVF 67
Query: 80 -CHVCHKNFSSSSALQIHMRTHTGDKPFRCTICQKAFTTKGNLKVREIEINIG 131
C VC + F L++HM +HTG+ P++C+ C + F K +L+ I+++ G
Sbjct: 68 TCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSG 120
>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|F Chain F, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|G Chain G, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
Length = 87
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/101 (38%), Positives = 50/101 (49%), Gaps = 31/101 (30%)
Query: 21 CHVCHKNFSSSSALQIHMRTHTGDKPFRCTICQKAFTTKGNLKLIPNAVFNVAGMPKHLC 80
C C K+FS SS LQ H RTHTG+KP++C C K+
Sbjct: 7 CPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKS------------------------- 41
Query: 81 HVCHKNFSSSSALQIHMRTHTGDKPFRCTICQKAFTTKGNL 121
FS SS LQ H RTHTG+KP++C C K+F+ +L
Sbjct: 42 ------FSQSSDLQKHQRTHTGEKPYKCPECGKSFSRSDHL 76
Score = 50.4 bits (119), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 30/43 (69%)
Query: 80 CHVCHKNFSSSSALQIHMRTHTGDKPFRCTICQKAFTTKGNLK 122
C C K+FS SS LQ H RTHTG+KP++C C K+F+ +L+
Sbjct: 7 CPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQ 49
Score = 50.1 bits (118), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 31/49 (63%)
Query: 14 AGMPKHLCHVCHKNFSSSSALQIHMRTHTGDKPFRCTICQKAFTTKGNL 62
G + C C K+FS SS LQ H RTHTG+KP++C C K+F+ +L
Sbjct: 28 TGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKCPECGKSFSRSDHL 76
>pdb|2JP9|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2JPA|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2PRT|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
Length = 119
Score = 68.9 bits (167), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/102 (38%), Positives = 52/102 (50%), Gaps = 7/102 (6%)
Query: 24 CHKNFSSSSALQIHMRTHTGDKPFRCTI--CQKAFTTKGNLKLIPNAVFNVAGMPKHLCH 81
C+K + S LQ+H R HTG+KP++C C++ F+ LK G+ C
Sbjct: 14 CNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQR---RHTGVKPFQCK 70
Query: 82 VCHKNFSSSSALQIHMRTHTGDKPFRCTI--CQKAFTTKGNL 121
C + FS S L+ H RTHTG+KPF C CQK F L
Sbjct: 71 TCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDEL 112
Score = 43.5 bits (101), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 14 AGMPKHLCHVCHKNFSSSSALQIHMRTHTGDKPFRCTI--CQKAFTTKGNL 62
G+ C C + FS S L+ H RTHTG+KPF C CQK F L
Sbjct: 62 TGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDEL 112
>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
pdb|1A1G|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
Length = 90
Score = 62.0 bits (149), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 50/107 (46%), Gaps = 32/107 (29%)
Query: 24 CHKNFSSSSALQIHMRTHTGDKPFRCTICQKAFTTKGNLKLIPNAVFNVAGMPKHLCHVC 83
C + FS SS L H+R HTG KPF+C IC +
Sbjct: 12 CDRRFSDSSNLTRHIRIHTGQKPFQCRICMR----------------------------- 42
Query: 84 HKNFSSSSALQIHMRTHTGDKPFRCTICQKAFTTKGNLKVREIEINI 130
NFS S L H+RTHTG+KPF C IC + F + + + R +I++
Sbjct: 43 --NFSRSDHLTTHIRTHTGEKPFACDICGRKF-ARSDERKRHTKIHL 86
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 26/43 (60%)
Query: 21 CHVCHKNFSSSSALQIHMRTHTGDKPFRCTICQKAFTTKGNLK 63
C +C +NFS S L H+RTHTG+KPF C IC + F K
Sbjct: 37 CRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERK 79
>pdb|1G2F|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
pdb|1G2F|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
Length = 90
Score = 61.6 bits (148), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 43/94 (45%), Gaps = 31/94 (32%)
Query: 24 CHKNFSSSSALQIHMRTHTGDKPFRCTICQKAFTTKGNLKLIPNAVFNVAGMPKHLCHVC 83
C + FS + L H+R HTG KPF+C IC +
Sbjct: 12 CDRRFSQKTNLDTHIRIHTGQKPFQCRICMR----------------------------- 42
Query: 84 HKNFSSSSALQIHMRTHTGDKPFRCTICQKAFTT 117
NFS ++L H+RTHTG+KPF C IC + F T
Sbjct: 43 --NFSQQASLNAHIRTHTGEKPFACDICGRKFAT 74
Score = 50.1 bits (118), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 27/38 (71%)
Query: 21 CHVCHKNFSSSSALQIHMRTHTGDKPFRCTICQKAFTT 58
C +C +NFS ++L H+RTHTG+KPF C IC + F T
Sbjct: 37 CRICMRNFSQQASLNAHIRTHTGEKPFACDICGRKFAT 74
Score = 43.5 bits (101), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 25/39 (64%)
Query: 83 CHKNFSSSSALQIHMRTHTGDKPFRCTICQKAFTTKGNL 121
C + FS + L H+R HTG KPF+C IC + F+ + +L
Sbjct: 12 CDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASL 50
>pdb|1JK1|A Chain A, Zif268 D20a Mutant Bound To Wt Dna Site
pdb|1JK2|A Chain A, Zif268 D20a Mutant Bound To The Gct Dna Site
Length = 90
Score = 61.6 bits (148), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 50/107 (46%), Gaps = 32/107 (29%)
Query: 24 CHKNFSSSSALQIHMRTHTGDKPFRCTICQKAFTTKGNLKLIPNAVFNVAGMPKHLCHVC 83
C + FS S+ L H+R HTG KPF+C IC +
Sbjct: 12 CDRRFSRSAELTRHIRIHTGQKPFQCRICMR----------------------------- 42
Query: 84 HKNFSSSSALQIHMRTHTGDKPFRCTICQKAFTTKGNLKVREIEINI 130
NFS S L H+RTHTG+KPF C IC + F + + + R +I++
Sbjct: 43 --NFSRSDHLTTHIRTHTGEKPFACDICGRKF-ARSDERKRHTKIHL 86
Score = 49.3 bits (116), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 26/43 (60%)
Query: 21 CHVCHKNFSSSSALQIHMRTHTGDKPFRCTICQKAFTTKGNLK 63
C +C +NFS S L H+RTHTG+KPF C IC + F K
Sbjct: 37 CRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERK 79
>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 61.2 bits (147), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 50/107 (46%), Gaps = 32/107 (29%)
Query: 24 CHKNFSSSSALQIHMRTHTGDKPFRCTICQKAFTTKGNLKLIPNAVFNVAGMPKHLCHVC 83
C + FS S +L H+R HTG KPF+C IC +
Sbjct: 12 CDRRFSQSGSLTRHIRIHTGQKPFQCRICMR----------------------------- 42
Query: 84 HKNFSSSSALQIHMRTHTGDKPFRCTICQKAFTTKGNLKVREIEINI 130
NFS S L H+RTHTG+KPF C IC + F + + + R +I++
Sbjct: 43 --NFSRSDHLTTHIRTHTGEKPFACDICGRKF-ARSDERKRHTKIHL 86
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 26/43 (60%)
Query: 21 CHVCHKNFSSSSALQIHMRTHTGDKPFRCTICQKAFTTKGNLK 63
C +C +NFS S L H+RTHTG+KPF C IC + F K
Sbjct: 37 CRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERK 79
>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
pdb|1A1J|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
pdb|1A1K|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
Length = 90
Score = 61.2 bits (147), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 50/107 (46%), Gaps = 32/107 (29%)
Query: 24 CHKNFSSSSALQIHMRTHTGDKPFRCTICQKAFTTKGNLKLIPNAVFNVAGMPKHLCHVC 83
C + FS S+ L H+R HTG KPF+C IC +
Sbjct: 12 CDRRFSRSADLTRHIRIHTGQKPFQCRICMR----------------------------- 42
Query: 84 HKNFSSSSALQIHMRTHTGDKPFRCTICQKAFTTKGNLKVREIEINI 130
NFS S L H+RTHTG+KPF C IC + F + + + R +I++
Sbjct: 43 --NFSRSDHLTTHIRTHTGEKPFACDICGRKF-ARSDERKRHTKIHL 86
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 26/43 (60%)
Query: 21 CHVCHKNFSSSSALQIHMRTHTGDKPFRCTICQKAFTTKGNLK 63
C +C +NFS S L H+RTHTG+KPF C IC + F K
Sbjct: 37 CRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERK 79
>pdb|1AAY|A Chain A, Zif268 Zinc Finger-Dna Complex
pdb|1A1L|A Chain A, Zif268 Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 61.2 bits (147), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 49/107 (45%), Gaps = 32/107 (29%)
Query: 24 CHKNFSSSSALQIHMRTHTGDKPFRCTICQKAFTTKGNLKLIPNAVFNVAGMPKHLCHVC 83
C + FS S L H+R HTG KPF+C IC +
Sbjct: 12 CDRRFSRSDELTRHIRIHTGQKPFQCRICMR----------------------------- 42
Query: 84 HKNFSSSSALQIHMRTHTGDKPFRCTICQKAFTTKGNLKVREIEINI 130
NFS S L H+RTHTG+KPF C IC + F + + + R +I++
Sbjct: 43 --NFSRSDHLTTHIRTHTGEKPFACDICGRKF-ARSDERKRHTKIHL 86
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 26/43 (60%)
Query: 21 CHVCHKNFSSSSALQIHMRTHTGDKPFRCTICQKAFTTKGNLK 63
C +C +NFS S L H+RTHTG+KPF C IC + F K
Sbjct: 37 CRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERK 79
>pdb|1P47|A Chain A, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
pdb|1P47|B Chain B, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
Length = 87
Score = 60.8 bits (146), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 49/107 (45%), Gaps = 32/107 (29%)
Query: 24 CHKNFSSSSALQIHMRTHTGDKPFRCTICQKAFTTKGNLKLIPNAVFNVAGMPKHLCHVC 83
C + FS S L H+R HTG KPF+C IC +
Sbjct: 11 CDRRFSRSDELTRHIRIHTGQKPFQCRICMR----------------------------- 41
Query: 84 HKNFSSSSALQIHMRTHTGDKPFRCTICQKAFTTKGNLKVREIEINI 130
NFS S L H+RTHTG+KPF C IC + F + + + R +I++
Sbjct: 42 --NFSRSDHLTTHIRTHTGEKPFACDICGRKF-ARSDERKRHTKIHL 85
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 26/43 (60%)
Query: 21 CHVCHKNFSSSSALQIHMRTHTGDKPFRCTICQKAFTTKGNLK 63
C +C +NFS S L H+RTHTG+KPF C IC + F K
Sbjct: 36 CRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERK 78
>pdb|1ZAA|C Chain C, Zinc Finger-Dna Recognition: Crystal Structure Of A
Zif268- Dna Complex At 2.1 Angstroms
Length = 87
Score = 60.8 bits (146), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 49/107 (45%), Gaps = 32/107 (29%)
Query: 24 CHKNFSSSSALQIHMRTHTGDKPFRCTICQKAFTTKGNLKLIPNAVFNVAGMPKHLCHVC 83
C + FS S L H+R HTG KPF+C IC +
Sbjct: 12 CDRRFSRSDELTRHIRIHTGQKPFQCRICMR----------------------------- 42
Query: 84 HKNFSSSSALQIHMRTHTGDKPFRCTICQKAFTTKGNLKVREIEINI 130
NFS S L H+RTHTG+KPF C IC + F + + + R +I++
Sbjct: 43 --NFSRSDHLTTHIRTHTGEKPFACDICGRKF-ARSDERKRHTKIHL 86
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 26/43 (60%)
Query: 21 CHVCHKNFSSSSALQIHMRTHTGDKPFRCTICQKAFTTKGNLK 63
C +C +NFS S L H+RTHTG+KPF C IC + F K
Sbjct: 37 CRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERK 79
>pdb|1G2D|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
pdb|1G2D|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
Length = 90
Score = 60.1 bits (144), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 42/94 (44%), Gaps = 31/94 (32%)
Query: 24 CHKNFSSSSALQIHMRTHTGDKPFRCTICQKAFTTKGNLKLIPNAVFNVAGMPKHLCHVC 83
C + FS + L H+R HTG KPF+C IC +
Sbjct: 12 CDRRFSQKTNLDTHIRIHTGQKPFQCRICMR----------------------------- 42
Query: 84 HKNFSSSSALQIHMRTHTGDKPFRCTICQKAFTT 117
NFS + L H+RTHTG+KPF C IC + F T
Sbjct: 43 --NFSQHTGLNQHIRTHTGEKPFACDICGRKFAT 74
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 26/38 (68%)
Query: 21 CHVCHKNFSSSSALQIHMRTHTGDKPFRCTICQKAFTT 58
C +C +NFS + L H+RTHTG+KPF C IC + F T
Sbjct: 37 CRICMRNFSQHTGLNQHIRTHTGEKPFACDICGRKFAT 74
>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna
Length = 82
Score = 57.4 bits (137), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 41/82 (50%), Gaps = 3/82 (3%)
Query: 21 CHVCHKNFSSSSALQIHMRTHTGDKPFRCTICQKAFTTKGNLKLIPNAVFNVAGMPKHLC 80
C +C K+F SS L H+ H+ +P+ C C K F K ++K F G H C
Sbjct: 4 CKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMK---KHTFIHTGEKPHKC 60
Query: 81 HVCHKNFSSSSALQIHMRTHTG 102
VC K FS SS L H R HTG
Sbjct: 61 QVCGKAFSQSSNLITHSRKHTG 82
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 7/71 (9%)
Query: 80 CHVCHKNFSSSSALQIHMRTHTGDKPFRCTICQKAFTTKGNLKVREIEINIGSQLPKKAQ 139
C +C K+F SS L H+ H+ +P+ C C K F K ++K + I+ G + P K Q
Sbjct: 4 CKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMK-KHTFIHTGEK-PHKCQ 61
Query: 140 QHIGAVEGKSF 150
V GK+F
Sbjct: 62 -----VCGKAF 67
Score = 30.4 bits (67), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 17/34 (50%)
Query: 10 VFNVAGMPKHLCHVCHKNFSSSSALQIHMRTHTG 43
F G H C VC K FS SS L H R HTG
Sbjct: 49 TFIHTGEKPHKCQVCGKAFSQSSNLITHSRKHTG 82
>pdb|2EBT|A Chain A, Solution Structure Of Three Tandem Repeats Of Zf-C2h2
Domains From Human Kruppel-Like Factor 5
Length = 100
Score = 57.0 bits (136), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 48/107 (44%), Gaps = 31/107 (28%)
Query: 19 HLCHV--CHKNFSSSSALQIHMRTHTGDKPFRCTICQKAFTTKGNLKLIPNAVFNVAGMP 76
H C C K ++ SS L+ H+RTHTG+KP++CT
Sbjct: 16 HYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTW------------------------- 50
Query: 77 KHLCHVCHKNFSSSSALQIHMRTHTGDKPFRCTICQKAFTTKGNLKV 123
C F+ S L H R HTG KPF+C +C ++F+ +L +
Sbjct: 51 ----EGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLAL 93
>pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type
Zinc-Binding Domain Of The Zinc Finger Protein 64,
Isoforms 1 And 2
Length = 96
Score = 56.2 bits (134), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 43/86 (50%), Gaps = 5/86 (5%)
Query: 19 HLCHVCHKNFSSSSALQIHMRTHTGDKPFRCTICQKAFTTKGNLKLIPNAVFNVAGMPKH 78
H C VC K FS L+ HMR HTG KP++C C A +L N + +
Sbjct: 9 HKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSL----NKHLRIHSDERP 64
Query: 79 L-CHVCHKNFSSSSALQIHMRTHTGD 103
C +C +SS L +H+R+HTGD
Sbjct: 65 FKCQICPYASRNSSQLTVHLRSHTGD 90
Score = 43.1 bits (100), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 24/44 (54%)
Query: 78 HLCHVCHKNFSSSSALQIHMRTHTGDKPFRCTICQKAFTTKGNL 121
H C VC K FS L+ HMR HTG KP++C C A +L
Sbjct: 9 HKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSL 52
>pdb|1UBD|C Chain C, Co-Crystal Structure Of Human Yy1 Zinc Finger Domain Bound
To The Adeno-Associated Virus P5 Initiator Element
Length = 124
Score = 53.9 bits (128), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 44/106 (41%), Gaps = 31/106 (29%)
Query: 19 HLCHVCHKNFSSSSALQIHMRTHTGDKPFRCTICQKAFTTKGNLKLIPNAVFNVAGMPKH 78
H+C C K F SS L+ H HTG+KPF+CT
Sbjct: 35 HVCAECGKAFVESSKLKRHQLVHTGEKPFQCTF--------------------------- 67
Query: 79 LCHVCHKNFSSSSALQIHMRTHTGDKPFRCTI--CQKAFTTKGNLK 122
C K FS L+ H+R HTGD+P+ C C K F NLK
Sbjct: 68 --EGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLK 111
Score = 43.5 bits (101), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 78 HLCHVCHKNFSSSSALQIHMRTHTGDKPFRCTI--CQKAFTTKGNLKVREIEINIGSQ 133
H+C C K F SS L+ H HTG+KPF+CT C K F+ NL+ + I+ G +
Sbjct: 35 HVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRT-HVRIHTGDR 91
>pdb|2GLI|A Chain A, Five-Finger GliDNA COMPLEX
Length = 155
Score = 53.1 bits (126), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 56/102 (54%), Gaps = 10/102 (9%)
Query: 28 FSSSSALQIHMRTHTGDKPFRCTI--CQKAFTTKGNLKLIPNAVFNVAGMPKHLCH--VC 83
F + L +HMR HTG+KP +CT C+K+++ NLK + + G ++C C
Sbjct: 49 FKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLK---THLRSHTGEKPYMCEHEGC 105
Query: 84 HKNFSSSSALQIHM-RTHTGDKPFRCTI--CQKAFTTKGNLK 122
K FS++S H RTH+ +KP+ C + C K +T +L+
Sbjct: 106 SKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLR 147
>pdb|2WBS|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 89
Score = 52.8 bits (125), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 45/100 (45%), Gaps = 29/100 (29%)
Query: 24 CHKNFSSSSALQIHMRTHTGDKPFRCTICQKAFTTKGNLKLIPNAVFNVAGMPKHLCHVC 83
C K ++ SS L+ H+RTHTG+KP+ C + G C
Sbjct: 13 CGKTYTKSSHLKAHLRTHTGEKPYHC---------------------DWDG--------C 43
Query: 84 HKNFSSSSALQIHMRTHTGDKPFRCTICQKAFTTKGNLKV 123
F+ S L H R HTG +PF+C C +AF+ +L +
Sbjct: 44 GWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLAL 83
>pdb|1TF6|A Chain A, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
pdb|1TF6|D Chain D, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
Length = 190
Score = 52.8 bits (125), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 52/108 (48%), Gaps = 7/108 (6%)
Query: 24 CHKNFSSSSALQIHMRTHTGDKPFRCTI--CQKAFTTKGNLKLIPNAVFNVAGMPKHLCH 81
C K F+S L H THTG+K F C C FTTK N+K N N+ + ++CH
Sbjct: 50 CEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIK-ICVYVCH 108
Query: 82 V--CHKNFSSSSALQIHMRTHTGDKPFRC--TICQKAFTTKGNLKVRE 125
C K F + L++H +HT P+ C C K F+ LK E
Sbjct: 109 FENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHE 156
>pdb|2WBU|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 90
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 45/100 (45%), Gaps = 29/100 (29%)
Query: 24 CHKNFSSSSALQIHMRTHTGDKPFRCTICQKAFTTKGNLKLIPNAVFNVAGMPKHLCHVC 83
C K ++ SS L+ H+RTHTG+KP+ C + G C
Sbjct: 14 CGKTYTKSSHLKAHLRTHTGEKPYHC---------------------DWDG--------C 44
Query: 84 HKNFSSSSALQIHMRTHTGDKPFRCTICQKAFTTKGNLKV 123
F+ S L H R HTG +PF+C C +AF+ +L +
Sbjct: 45 GWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLAL 84
>pdb|2RPC|A Chain A, Solution Structure Of The Tandem Zf-C2h2 Domains From The
Human Zinc Finger Protein Zic 3
Length = 155
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 53/129 (41%), Gaps = 39/129 (30%)
Query: 4 KLIPNAVFNVAGMPKHLCHVCH--------KNFSSSSALQIHMRTHTGDKPFRCTICQKA 55
+L+ + G P+ HVC+ K+F + L H+R HTG+KPF C
Sbjct: 40 ELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKPFPCPF---- 95
Query: 56 FTTKGNLKLIPNAVFNVAGMPKHLCHVCHKNFSSSSALQIHMRTHTGDKPFRCTI--CQK 113
P C K F+ S L+IH RTHTG+KPF+C C +
Sbjct: 96 ----------PG---------------CGKIFARSENLKIHKRTHTGEKPFKCEFEGCDR 130
Query: 114 AFTTKGNLK 122
F + K
Sbjct: 131 RFANSSDRK 139
>pdb|1LLM|C Chain C, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
pdb|1LLM|D Chain D, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
Length = 88
Score = 50.4 bits (119), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 26/43 (60%)
Query: 21 CHVCHKNFSSSSALQIHMRTHTGDKPFRCTICQKAFTTKGNLK 63
C +C +NFS S L H+RTHTG+KPF C IC + F K
Sbjct: 6 CRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERK 48
Score = 50.4 bits (119), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 26/43 (60%)
Query: 80 CHVCHKNFSSSSALQIHMRTHTGDKPFRCTICQKAFTTKGNLK 122
C +C +NFS S L H+RTHTG+KPF C IC + F K
Sbjct: 6 CRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERK 48
>pdb|2EE8|A Chain A, Solution Structure Of Three Zf-C2h2 Domains From Mouse
Protein Odd-Skipped-Related 2 Splicing Isoform 2
Length = 106
Score = 49.3 bits (116), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 43/104 (41%), Gaps = 31/104 (29%)
Query: 20 LCHVCHKNFSSSSALQIHMRTHTGDKPFRCTICQKAFTTKGNLKLIPNAVFNVAGMPKHL 79
+C C ++F+ S L IH RTHT ++P+ C IC KAF + +L+
Sbjct: 19 ICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLR---------------- 62
Query: 80 CHVCHKNFSSSSALQIHMRTHTGDKPFRCTICQKAFTTKGNLKV 123
H H+ +KPF+C C K F L V
Sbjct: 63 ---------------DHRYIHSKEKPFKCQECGKGFCQSRTLAV 91
Score = 36.6 bits (83), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 22/44 (50%)
Query: 19 HLCHVCHKNFSSSSALQIHMRTHTGDKPFRCTICQKAFTTKGNL 62
+ C +CHK F L+ H H+ +KPF+C C K F L
Sbjct: 46 YTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFCQSRTL 89
>pdb|2COT|A Chain A, Solution Structure Of The First And Second Zf-C2h2
Domain Of Zinc Finger Protein 435
Length = 77
Score = 49.3 bits (116), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 30/45 (66%)
Query: 18 KHLCHVCHKNFSSSSALQIHMRTHTGDKPFRCTICQKAFTTKGNL 62
++ C C K+FS SS L H RTHTG+KP++C C KAF + +L
Sbjct: 18 RYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHL 62
Score = 49.3 bits (116), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 30/45 (66%)
Query: 77 KHLCHVCHKNFSSSSALQIHMRTHTGDKPFRCTICQKAFTTKGNL 121
++ C C K+FS SS L H RTHTG+KP++C C KAF + +L
Sbjct: 18 RYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHL 62
>pdb|3UK3|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|3UK3|D Chain D, Crystal Structure Of Znf217 Bound To Dna
pdb|4F2J|C Chain C, Crystal Structure Of Znf217 Bound To Dna, P6522 Crystal
Form
pdb|4IS1|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|4IS1|D Chain D, Crystal Structure Of Znf217 Bound To Dna
Length = 57
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 29/50 (58%)
Query: 74 GMPKHLCHVCHKNFSSSSALQIHMRTHTGDKPFRCTICQKAFTTKGNLKV 123
G C C K F S+ L IH+RTHTG+KP++C C+ A K +L+
Sbjct: 1 GSSSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRY 50
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 29/50 (58%)
Query: 15 GMPKHLCHVCHKNFSSSSALQIHMRTHTGDKPFRCTICQKAFTTKGNLKL 64
G C C K F S+ L IH+RTHTG+KP++C C+ A K +L+
Sbjct: 1 GSSSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRY 50
>pdb|2LCE|A Chain A, Chemical Shift Assignment Of Hr4436b From Homo Sapiens,
Northeast Structural Genomics Consortium
Length = 74
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 35/62 (56%), Gaps = 3/62 (4%)
Query: 44 DKPFRCTICQKAFTTKGNLKLIPNAVFNVAGMPKHLCHVCHKNFSSSSALQIHMRTHTGD 103
DKP++C CQ +F KGN L + + P + C++C F+ + L+ H R H+G+
Sbjct: 15 DKPYKCDRCQASFRYKGN--LASHKTVHTGEKP-YRCNICGAQFNRPANLKTHTRIHSGE 71
Query: 104 KP 105
KP
Sbjct: 72 KP 73
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 21/43 (48%)
Query: 21 CHVCHKNFSSSSALQIHMRTHTGDKPFRCTICQKAFTTKGNLK 63
C C +F L H HTG+KP+RC IC F NLK
Sbjct: 20 CDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLK 62
Score = 30.4 bits (67), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 103 DKPFRCTICQKAFTTKGNL 121
DKP++C CQ +F KGNL
Sbjct: 15 DKPYKCDRCQASFRYKGNL 33
Score = 29.6 bits (65), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 15 GMPKHLCHVCHKNFSSSSALQIHMRTHTGDKP 46
G + C++C F+ + L+ H R H+G+KP
Sbjct: 42 GEKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73
>pdb|2CSH|A Chain A, Solution Structure Of Tandem Repeat Of The Zf-C2h2 Domains
Of Human Zinc Finger Protein 297b
Length = 110
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 48/108 (44%), Gaps = 5/108 (4%)
Query: 42 TGDKPFRCTICQKAFTTKGNLKLIPNAVFNVAGMPKHLCHVCHKNFSSSSALQIHMRTHT 101
+GDK + C C K+FT K + G+ + C VC K F L HM+ HT
Sbjct: 6 SGDKLYPCQ-CGKSFTHKSQRDRHMSMHL---GLRPYGCGVCGKKFKMKHHLVGHMKIHT 61
Query: 102 GDKPFRCTICQKAFTTKGNLKVREIEINIGSQLPKKAQQHIGAVEGKS 149
G KP+ C IC K F + + R + S KA+Q+ G S
Sbjct: 62 GIKPYECNICAKRFMWRDSFH-RHVTSCTKSYEAAKAEQNTTEASGPS 108
Score = 39.7 bits (91), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 25/48 (52%)
Query: 15 GMPKHLCHVCHKNFSSSSALQIHMRTHTGDKPFRCTICQKAFTTKGNL 62
G+ + C VC K F L HM+ HTG KP+ C IC K F + +
Sbjct: 34 GLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSF 81
>pdb|1X6E|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain
Of Human Zinc Finger Protein 24
Length = 72
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 25/42 (59%)
Query: 21 CHVCHKNFSSSSALQIHMRTHTGDKPFRCTICQKAFTTKGNL 62
C C K FS SS L H R HTG+KP++C C KAF+ L
Sbjct: 17 CVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGL 58
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 25/42 (59%)
Query: 80 CHVCHKNFSSSSALQIHMRTHTGDKPFRCTICQKAFTTKGNL 121
C C K FS SS L H R HTG+KP++C C KAF+ L
Sbjct: 17 CVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGL 58
>pdb|1F2I|G Chain G, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
pdb|1F2I|H Chain H, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
pdb|1F2I|I Chain I, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
pdb|1F2I|J Chain J, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
pdb|1F2I|K Chain K, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
pdb|1F2I|L Chain L, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
Length = 73
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 11 FNVAGMPKHLCHV--CHKNFSSSSALQIHMRTHTGDKPFRCTICQKAFTTKGNL 62
+ V M + C V C + FS S L H+R HTG KPF+C IC + F+ +L
Sbjct: 12 YVVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHL 65
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 70 FNVAGMPKHLCHV--CHKNFSSSSALQIHMRTHTGDKPFRCTICQKAFTTKGNL 121
+ V M + C V C + FS S L H+R HTG KPF+C IC + F+ +L
Sbjct: 12 YVVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHL 65
Score = 30.0 bits (66), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 21 CHVCHKNFSSSSALQIHMRTHT 42
C +C +NFS S L H+RTHT
Sbjct: 52 CRICMRNFSRSDHLTTHIRTHT 73
>pdb|1BBO|A Chain A, High-Resolution Solution Structure Of The Double
Cys2His2 Zinc Finger From The Human Enhancer Binding
Protein Mbp-1
Length = 57
Score = 43.5 bits (101), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 27/45 (60%)
Query: 18 KHLCHVCHKNFSSSSALQIHMRTHTGDKPFRCTICQKAFTTKGNL 62
K++C C S L+ H+RTHT +P+ CT C +F TKGNL
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNL 45
Score = 43.5 bits (101), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 27/45 (60%)
Query: 77 KHLCHVCHKNFSSSSALQIHMRTHTGDKPFRCTICQKAFTTKGNL 121
K++C C S L+ H+RTHT +P+ CT C +F TKGNL
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNL 45
>pdb|2YT9|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 345 In
Zinc Finger Protein 278
Length = 95
Score = 43.1 bits (100), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 2/83 (2%)
Query: 21 CHVCHKNFSSSSALQIHMRTHTGDKPFRCTICQKAFTTKGNLKLIPNAVFNVAGMPKHLC 80
C +C K F L H +H+G+KP+ C +C F K + + G P ++C
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKP-YIC 68
Query: 81 HVCHKNFSSSSALQIHMR-THTG 102
C K FS L H++ H+G
Sbjct: 69 QSCGKGFSRPDHLNGHIKQVHSG 91
Score = 34.3 bits (77), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 80 CHVCHKNFSSSSALQIHMRTHTGDKPFRCTICQKAFTTKGNLK--VREIEINIG 131
C +C K F L H +H+G+KP+ C +C F K + VR + ++G
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVG 63
Score = 31.6 bits (70), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Query: 14 AGMPKHLCHVCHKNFSSSSALQIHMRTHTGD--KPFRCTICQKAFTTKGNL 62
+G + C VC F + H+R+H G KP+ C C K F+ +L
Sbjct: 31 SGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHL 81
>pdb|2ADR|A Chain A, Adr1 Dna-Binding Domain From Saccharomyces Cerevisiae,
Nmr, 25 Structures
Length = 60
Score = 43.1 bits (100), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 27/43 (62%)
Query: 20 LCHVCHKNFSSSSALQIHMRTHTGDKPFRCTICQKAFTTKGNL 62
+C VC + F+ L+ H R+HT +KP+ C +C +AFT + L
Sbjct: 4 VCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLL 46
Score = 43.1 bits (100), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 27/43 (62%)
Query: 79 LCHVCHKNFSSSSALQIHMRTHTGDKPFRCTICQKAFTTKGNL 121
+C VC + F+ L+ H R+HT +KP+ C +C +AFT + L
Sbjct: 4 VCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLL 46
>pdb|2CT1|A Chain A, Solution Structure Of The Zinc Finger Domain Of
Transcriptional Repressor Ctcf Protein
Length = 77
Score = 40.0 bits (92), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 5/62 (8%)
Query: 39 RTHTGDKPFRCTICQKAFTTKGNLKL--IPNAVFNVAGMPKHLCHVCHKNFSSSSALQIH 96
RTH+G+KP+ C IC FT G +K+ + NVA K C C + S L +H
Sbjct: 8 RTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVA---KFHCPHCDTVIARKSDLGVH 64
Query: 97 MR 98
+R
Sbjct: 65 LR 66
Score = 36.2 bits (82), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 98 RTHTGDKPFRCTICQKAFTTKGNLKV 123
RTH+G+KP+ C IC FT G +K+
Sbjct: 8 RTHSGEKPYECYICHARFTQSGTMKM 33
Score = 27.3 bits (59), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 14 AGMPKHLCHVCHKNFSSSSALQIH-MRTHTGD-KPFRCTICQKAFTTKGNLKL 64
+G + C++CH F+ S +++H ++ HT + F C C K +L +
Sbjct: 11 SGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGV 63
>pdb|1TF3|A Chain A, Tfiiia Finger 1-3 Bound To Dna, Nmr, 22 Structures
Length = 92
Score = 40.0 bits (92), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 39/101 (38%), Gaps = 31/101 (30%)
Query: 24 CHKNFSSSSALQIHMRTHTGDKPFRCTICQKAFTTKGNLKLIPNAVFNVAGMPKHLCHVC 83
C ++ + LQ H+ HTG+KPF C C
Sbjct: 11 CGAAYNKNWKLQAHLSKHTGEKPFPCKE-----------------------------EGC 41
Query: 84 HKNFSSSSALQIHMRTHTGDKPFRCTI--CQKAFTTKGNLK 122
K F+S L H THTG+K F C C FTTK N+K
Sbjct: 42 EKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMK 82
Score = 35.4 bits (80), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 24 CHKNFSSSSALQIHMRTHTGDKPFRCTI--CQKAFTTKGNLKLIPNAVFNV 72
C K F+S L H THTG+K F C C FTTK N+K N N+
Sbjct: 41 CEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNI 91
>pdb|2EM6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
199- 231) Of Human Zinc Finger Protein 224
Length = 46
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 18/26 (69%)
Query: 21 CHVCHKNFSSSSALQIHMRTHTGDKP 46
C VC K FS SS LQ H R HTG+KP
Sbjct: 15 CDVCGKEFSQSSHLQTHQRVHTGEKP 40
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 18/26 (69%)
Query: 80 CHVCHKNFSSSSALQIHMRTHTGDKP 105
C VC K FS SS LQ H R HTG+KP
Sbjct: 15 CDVCGKEFSQSSHLQTHQRVHTGEKP 40
>pdb|2EPA|A Chain A, Solution Structure Of The First And Second Zf-C2h2
Domains From Human Krueppel-Like Factor 10
Length = 72
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Query: 24 CHKNFSSSSALQIHMRTHTGDKPFRCTI--CQKAFTTKGNL 62
C K + SS L+ H RTHTG+KPF C+ C++ F L
Sbjct: 25 CGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDEL 65
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Query: 83 CHKNFSSSSALQIHMRTHTGDKPFRCTI--CQKAFTTKGNL 121
C K + SS L+ H RTHTG+KPF C+ C++ F L
Sbjct: 25 CGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDEL 65
>pdb|2EOG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
693- 723) Of Human Zinc Finger Protein 268
Length = 44
Score = 37.0 bits (84), Expect = 0.004, Method: Composition-based stats.
Identities = 18/33 (54%), Positives = 22/33 (66%)
Query: 14 AGMPKHLCHVCHKNFSSSSALQIHMRTHTGDKP 46
+G+ + C C K F S S L IHMRTHTG+KP
Sbjct: 6 SGVKPYGCSECGKAFRSKSYLIIHMRTHTGEKP 38
Score = 37.0 bits (84), Expect = 0.004, Method: Composition-based stats.
Identities = 18/33 (54%), Positives = 22/33 (66%)
Query: 73 AGMPKHLCHVCHKNFSSSSALQIHMRTHTGDKP 105
+G+ + C C K F S S L IHMRTHTG+KP
Sbjct: 6 SGVKPYGCSECGKAFRSKSYLIIHMRTHTGEKP 38
>pdb|2EP0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
528- 560) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 36.6 bits (83), Expect = 0.007, Method: Composition-based stats.
Identities = 15/26 (57%), Positives = 19/26 (73%)
Query: 21 CHVCHKNFSSSSALQIHMRTHTGDKP 46
C VCHK+F S+L +H R HTG+KP
Sbjct: 15 CDVCHKSFRYGSSLTVHQRIHTGEKP 40
Score = 36.6 bits (83), Expect = 0.007, Method: Composition-based stats.
Identities = 15/26 (57%), Positives = 19/26 (73%)
Query: 80 CHVCHKNFSSSSALQIHMRTHTGDKP 105
C VCHK+F S+L +H R HTG+KP
Sbjct: 15 CDVCHKSFRYGSSLTVHQRIHTGEKP 40
>pdb|2YTQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
775- 807) Of Human Zinc Finger Protein 268
Length = 46
Score = 35.8 bits (81), Expect = 0.009, Method: Composition-based stats.
Identities = 17/26 (65%), Positives = 19/26 (73%)
Query: 21 CHVCHKNFSSSSALQIHMRTHTGDKP 46
C C K FSS S L IHMRTH+G+KP
Sbjct: 15 CSECGKAFSSKSYLIIHMRTHSGEKP 40
Score = 35.8 bits (81), Expect = 0.009, Method: Composition-based stats.
Identities = 17/26 (65%), Positives = 19/26 (73%)
Query: 80 CHVCHKNFSSSSALQIHMRTHTGDKP 105
C C K FSS S L IHMRTH+G+KP
Sbjct: 15 CSECGKAFSSKSYLIIHMRTHSGEKP 40
>pdb|2EN9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
415- 447) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 35.8 bits (81), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 19/26 (73%)
Query: 21 CHVCHKNFSSSSALQIHMRTHTGDKP 46
C+ C K F+ SS+L +H R HTG+KP
Sbjct: 15 CNECKKTFTQSSSLTVHQRIHTGEKP 40
Score = 35.8 bits (81), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 19/26 (73%)
Query: 80 CHVCHKNFSSSSALQIHMRTHTGDKP 105
C+ C K F+ SS+L +H R HTG+KP
Sbjct: 15 CNECKKTFTQSSSLTVHQRIHTGEKP 40
>pdb|2LT7|A Chain A, Solution Nmr Structure Of Kaiso Zinc Finger Dna Binding
Domain In Complex With Kaiso Binding Site Dna
pdb|4F6M|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Domain
In Complex With Kaiso Binding Site Dna
pdb|4F6N|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Protein
In Complex With Methylated Cpg Site Dna
Length = 133
Score = 35.8 bits (81), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 45/103 (43%), Gaps = 31/103 (30%)
Query: 13 VAGMPKHLCHVCHKNFSSSSALQIHMRTHTGDKPFRCTICQKAFTTKGNLKLIPNAVFNV 72
V G ++C VC +++ ++L+ H H+ +K + C C+K F P A +
Sbjct: 17 VDGRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVF---------PLAEYRT 67
Query: 73 AGMPKHLCHVCHKNFSSSSALQIHMRTHTGDKPFRCTICQKAF 115
KH +IH HTG++ ++C C K+F
Sbjct: 68 ----KH---------------EIH---HTGERRYQCLACGKSF 88
>pdb|2YTF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
607- 639) Of Human Zinc Finger Protein 268
Length = 46
Score = 35.0 bits (79), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 25/62 (40%), Gaps = 31/62 (50%)
Query: 44 DKPFRCTICQKAFTTKGNLKLIPNAVFNVAGMPKHLCHVCHKNFSSSSALQIHMRTHTGD 103
+KPF C+ CQKAF TK NL +H RTHTG+
Sbjct: 10 EKPFECSECQKAFNTKSNLI-------------------------------VHQRTHTGE 38
Query: 104 KP 105
KP
Sbjct: 39 KP 40
Score = 33.9 bits (76), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 21 CHVCHKNFSSSSALQIHMRTHTGDKP 46
C C K F++ S L +H RTHTG+KP
Sbjct: 15 CSECQKAFNTKSNLIVHQRTHTGEKP 40
Score = 33.5 bits (75), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 14/21 (66%), Positives = 16/21 (76%)
Query: 103 DKPFRCTICQKAFTTKGNLKV 123
+KPF C+ CQKAF TK NL V
Sbjct: 10 EKPFECSECQKAFNTKSNLIV 30
>pdb|2EN6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
887- 919) Of Human Zinc Finger Protein 268
Length = 46
Score = 34.7 bits (78), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 17/26 (65%)
Query: 21 CHVCHKNFSSSSALQIHMRTHTGDKP 46
C+ C K FS S L H RTHTG+KP
Sbjct: 15 CNECGKTFSQKSILSAHQRTHTGEKP 40
Score = 34.7 bits (78), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 17/26 (65%)
Query: 80 CHVCHKNFSSSSALQIHMRTHTGDKP 105
C+ C K FS S L H RTHTG+KP
Sbjct: 15 CNECGKTFSQKSILSAHQRTHTGEKP 40
>pdb|4GZN|C Chain C, Mouse Zfp57 Zinc Fingers In Complex With Methylated Dna
Length = 60
Score = 33.5 bits (75), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 20/43 (46%)
Query: 20 LCHVCHKNFSSSSALQIHMRTHTGDKPFRCTICQKAFTTKGNL 62
C+ C K + +S L H R H G +P C C K F + +
Sbjct: 6 FCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEV 48
Score = 33.5 bits (75), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 20/43 (46%)
Query: 79 LCHVCHKNFSSSSALQIHMRTHTGDKPFRCTICQKAFTTKGNL 121
C+ C K + +S L H R H G +P C C K F + +
Sbjct: 6 FCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEV 48
>pdb|2EMJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
612- 644) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 33.1 bits (74), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 17/26 (65%)
Query: 21 CHVCHKNFSSSSALQIHMRTHTGDKP 46
C C K+FS SS L H R HTG+KP
Sbjct: 15 CAECGKSFSISSQLATHQRIHTGEKP 40
Score = 33.1 bits (74), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 17/26 (65%)
Query: 80 CHVCHKNFSSSSALQIHMRTHTGDKP 105
C C K+FS SS L H R HTG+KP
Sbjct: 15 CAECGKSFSISSQLATHQRIHTGEKP 40
>pdb|2EN7|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
495- 525) Of Human Zinc Finger Protein 268
Length = 44
Score = 33.1 bits (74), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 19/29 (65%)
Query: 16 MPKHLCHVCHKNFSSSSALQIHMRTHTGD 44
M ++C+ C K F S S L IH RTHTG+
Sbjct: 10 MKPYVCNECGKAFRSKSYLIIHTRTHTGE 38
Score = 33.1 bits (74), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 19/29 (65%)
Query: 75 MPKHLCHVCHKNFSSSSALQIHMRTHTGD 103
M ++C+ C K F S S L IH RTHTG+
Sbjct: 10 MKPYVCNECGKAFRSKSYLIIHTRTHTGE 38
>pdb|2EN8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
171- 203) Of Human Zinc Finger Protein 224
Length = 46
Score = 33.1 bits (74), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 17/27 (62%)
Query: 19 HLCHVCHKNFSSSSALQIHMRTHTGDK 45
H C C KNF SAL+IH R H G+K
Sbjct: 13 HTCDECGKNFCYISALRIHQRVHMGEK 39
Score = 33.1 bits (74), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 17/27 (62%)
Query: 78 HLCHVCHKNFSSSSALQIHMRTHTGDK 104
H C C KNF SAL+IH R H G+K
Sbjct: 13 HTCDECGKNFCYISALRIHQRVHMGEK 39
>pdb|2EOF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
411- 441) Of Human Zinc Finger Protein 268
Length = 44
Score = 32.7 bits (73), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 13/21 (61%), Positives = 15/21 (71%)
Query: 103 DKPFRCTICQKAFTTKGNLKV 123
+KP+ C CQKAF TK NL V
Sbjct: 10 EKPYECNECQKAFNTKSNLMV 30
Score = 32.0 bits (71), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 12/19 (63%), Positives = 14/19 (73%)
Query: 44 DKPFRCTICQKAFTTKGNL 62
+KP+ C CQKAF TK NL
Sbjct: 10 EKPYECNECQKAFNTKSNL 28
Score = 31.2 bits (69), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 19 HLCHVCHKNFSSSSALQIHMRTHTGD 44
+ C+ C K F++ S L +H RTHTG+
Sbjct: 13 YECNECQKAFNTKSNLMVHQRTHTGE 38
Score = 31.2 bits (69), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 78 HLCHVCHKNFSSSSALQIHMRTHTGD 103
+ C+ C K F++ S L +H RTHTG+
Sbjct: 13 YECNECQKAFNTKSNLMVHQRTHTGE 38
>pdb|2EQ2|A Chain A, Solution Structure Of The 16th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 32.7 bits (73), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 19 HLCHVCHKNFSSSSALQIHMRTHTGDKP 46
+ C+ C K FS +S L H R HTG+KP
Sbjct: 13 YQCNECGKAFSQTSKLARHQRVHTGEKP 40
Score = 32.7 bits (73), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 78 HLCHVCHKNFSSSSALQIHMRTHTGDKP 105
+ C+ C K FS +S L H R HTG+KP
Sbjct: 13 YQCNECGKAFSQTSKLARHQRVHTGEKP 40
>pdb|2YSV|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 17 In
Zinc Finger Protein 473
Length = 42
Score = 32.7 bits (73), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 14 AGMPKHLCHVCHKNFSSSSALQIHMRTHTGD 44
+G ++C C K F+ SS L IH R HTG+
Sbjct: 6 SGEKPYVCQECGKAFTQSSCLSIHRRVHTGE 36
Score = 32.7 bits (73), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 73 AGMPKHLCHVCHKNFSSSSALQIHMRTHTGD 103
+G ++C C K F+ SS L IH R HTG+
Sbjct: 6 SGEKPYVCQECGKAFTQSSCLSIHRRVHTGE 36
>pdb|2EMW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
301- 331) Of Human Zinc Finger Protein 268
Length = 44
Score = 32.7 bits (73), Expect = 0.092, Method: Composition-based stats.
Identities = 15/32 (46%), Positives = 21/32 (65%)
Query: 14 AGMPKHLCHVCHKNFSSSSALQIHMRTHTGDK 45
+G + C+ C K+FSS S L +H R HTG+K
Sbjct: 6 SGEKPYGCNECGKDFSSKSYLIVHQRIHTGEK 37
Score = 32.7 bits (73), Expect = 0.092, Method: Composition-based stats.
Identities = 15/32 (46%), Positives = 21/32 (65%)
Query: 73 AGMPKHLCHVCHKNFSSSSALQIHMRTHTGDK 104
+G + C+ C K+FSS S L +H R HTG+K
Sbjct: 6 SGEKPYGCNECGKDFSSKSYLIVHQRIHTGEK 37
>pdb|2EP2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
603- 635) Of Human Zinc Finger Protein 484
Length = 46
Score = 32.7 bits (73), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 19 HLCHVCHKNFSSSSALQIHMRTHTGDKP 46
+ C +C K+F+ S L +H + HTG+KP
Sbjct: 13 YECSICGKSFTKKSQLHVHQQIHTGEKP 40
Score = 32.7 bits (73), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 78 HLCHVCHKNFSSSSALQIHMRTHTGDKP 105
+ C +C K+F+ S L +H + HTG+KP
Sbjct: 13 YECSICGKSFTKKSQLHVHQQIHTGEKP 40
Score = 30.0 bits (66), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 103 DKPFRCTICQKAFTTKGNLKVRE 125
+KP+ C+IC K+FT K L V +
Sbjct: 10 EKPYECSICGKSFTKKSQLHVHQ 32
>pdb|1X6H|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain
Of Human Transcriptional Repressor Ctcf
Length = 86
Score = 32.3 bits (72), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 39 RTHTGDKPFRCTICQKAFTTKGNLKLIPNAVFNVAGMP-KHLCHVCHKNFSSSSALQIH 96
RTHTG+KP+ C+ C K F K L + + +P +C C K F+ + + H
Sbjct: 8 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARH 66
Score = 30.8 bits (68), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 15/21 (71%)
Query: 98 RTHTGDKPFRCTICQKAFTTK 118
RTHTG+KP+ C+ C K F K
Sbjct: 8 RTHTGEKPYACSHCDKTFRQK 28
>pdb|2EOP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
719- 751) Of Human Zinc Finger Protein 268
Length = 46
Score = 32.3 bits (72), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 19 HLCHVCHKNFSSSSALQIHMRTHTGDKP 46
H C C K+FS +S L +H R HTG+ P
Sbjct: 13 HECRECGKSFSFNSQLIVHQRIHTGENP 40
Score = 32.3 bits (72), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 78 HLCHVCHKNFSSSSALQIHMRTHTGDKP 105
H C C K+FS +S L +H R HTG+ P
Sbjct: 13 HECRECGKSFSFNSQLIVHQRIHTGENP 40
>pdb|2YTR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
760- 792) Of Human Zinc Finger Protein 347
Length = 46
Score = 32.3 bits (72), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 19 HLCHVCHKNFSSSSALQIHMRTHTGDKP 46
+ C+ C K FS +S L H R HTG+KP
Sbjct: 13 YKCNECGKAFSQTSKLARHQRIHTGEKP 40
Score = 32.3 bits (72), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 78 HLCHVCHKNFSSSSALQIHMRTHTGDKP 105
+ C+ C K FS +S L H R HTG+KP
Sbjct: 13 YKCNECGKAFSQTSKLARHQRIHTGEKP 40
>pdb|2EOI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
329- 359) Of Human Zinc Finger Protein 268
Length = 44
Score = 32.3 bits (72), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 18/33 (54%)
Query: 14 AGMPKHLCHVCHKNFSSSSALQIHMRTHTGDKP 46
+G H C C K FS S L IH R HTG+ P
Sbjct: 6 SGEKLHECSECRKTFSFHSQLVIHQRIHTGENP 38
Score = 32.3 bits (72), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 18/33 (54%)
Query: 73 AGMPKHLCHVCHKNFSSSSALQIHMRTHTGDKP 105
+G H C C K FS S L IH R HTG+ P
Sbjct: 6 SGEKLHECSECRKTFSFHSQLVIHQRIHTGENP 38
>pdb|2EM5|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
768- 800) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 32.3 bits (72), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 19 HLCHVCHKNFSSSSALQIHMRTHTGDKP 46
H CH C + F+ S L H R HTG+KP
Sbjct: 13 HQCHECGRGFTLKSHLNQHQRIHTGEKP 40
Score = 32.3 bits (72), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 78 HLCHVCHKNFSSSSALQIHMRTHTGDKP 105
H CH C + F+ S L H R HTG+KP
Sbjct: 13 HQCHECGRGFTLKSHLNQHQRIHTGEKP 40
>pdb|2ELY|A Chain A, Solution Structure Of The Third Zf-C2h2 Domain From
Human Zinc Finger Protein 224
Length = 46
Score = 32.3 bits (72), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 21 CHVCHKNFSSSSALQIHMRTHTGDKP 46
C C K FS SAL +H + HTG+KP
Sbjct: 15 CVECGKGFSRRSALNVHHKLHTGEKP 40
Score = 32.3 bits (72), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 80 CHVCHKNFSSSSALQIHMRTHTGDKP 105
C C K FS SAL +H + HTG+KP
Sbjct: 15 CVECGKGFSRRSALNVHHKLHTGEKP 40
>pdb|2EOW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
368- 400) Of Human Zinc Finger Protein 347
Length = 46
Score = 32.0 bits (71), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 19 HLCHVCHKNFSSSSALQIHMRTHTGDKP 46
+ C+ C K F + S+L IH TH+G+KP
Sbjct: 13 YKCNECGKAFRARSSLAIHQATHSGEKP 40
Score = 32.0 bits (71), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 78 HLCHVCHKNFSSSSALQIHMRTHTGDKP 105
+ C+ C K F + S+L IH TH+G+KP
Sbjct: 13 YKCNECGKAFRARSSLAIHQATHSGEKP 40
>pdb|2EMX|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
273- 303) Of Human Zinc Finger Protein 268
Length = 44
Score = 32.0 bits (71), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 19/25 (76%)
Query: 101 TGDKPFRCTICQKAFTTKGNLKVRE 125
+G+KPF C+ C+KAF++K L V +
Sbjct: 6 SGEKPFGCSCCEKAFSSKSYLLVHQ 30
Score = 31.2 bits (69), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 17/21 (80%)
Query: 42 TGDKPFRCTICQKAFTTKGNL 62
+G+KPF C+ C+KAF++K L
Sbjct: 6 SGEKPFGCSCCEKAFSSKSYL 26
Score = 30.0 bits (66), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 21 CHVCHKNFSSSSALQIHMRTHTGDKP 46
C C K FSS S L +H +TH +KP
Sbjct: 13 CSCCEKAFSSKSYLLVHQQTHAEEKP 38
Score = 30.0 bits (66), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 80 CHVCHKNFSSSSALQIHMRTHTGDKP 105
C C K FSS S L +H +TH +KP
Sbjct: 13 CSCCEKAFSSKSYLLVHQQTHAEEKP 38
>pdb|1X5W|A Chain A, Solution Structure Of The C2h2 Type Zinc-Binding Domain
Of Human Zinc Finger Protein 64, Isoforms 1 And 2
Length = 70
Score = 32.0 bits (71), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
Query: 32 SALQIHMRTHTGDKPFRCTICQKAFTTK 59
+AL+IH R H D+PF+C C +F TK
Sbjct: 23 AALRIHERIHCTDRPFKCNYC--SFDTK 48
Score = 32.0 bits (71), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
Query: 91 SALQIHMRTHTGDKPFRCTICQKAFTTK 118
+AL+IH R H D+PF+C C +F TK
Sbjct: 23 AALRIHERIHCTDRPFKCNYC--SFDTK 48
>pdb|1XF7|A Chain A, High Resolution Nmr Structure Of The Wilms' Tumor
Suppressor Protein (Wt1) Finger 3
Length = 29
Score = 32.0 bits (71), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 21 CHVCHKNFSSSSALQIHMRTHTGDK 45
C C + FS S L+ H RTHTG+K
Sbjct: 5 CKTCQRKFSRSDHLKTHTRTHTGEK 29
Score = 32.0 bits (71), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 80 CHVCHKNFSSSSALQIHMRTHTGDK 104
C C + FS S L+ H RTHTG+K
Sbjct: 5 CKTCQRKFSRSDHLKTHTRTHTGEK 29
>pdb|2YTB|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 5 In
Zinc Finger Protein 32
Length = 42
Score = 31.6 bits (70), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 103 DKPFRCTICQKAFTTKGNLKVREIEINIGS 132
+KP+RC C KAF+ KG+L V I ++ GS
Sbjct: 9 EKPYRCDQCGKAFSQKGSLIV-HIRVHTGS 37
Score = 30.0 bits (66), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 19 HLCHVCHKNFSSSSALQIHMRTHTGDKP 46
+ C C K FS +L +H+R HTG P
Sbjct: 12 YRCDQCGKAFSQKGSLIVHIRVHTGSGP 39
Score = 30.0 bits (66), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 78 HLCHVCHKNFSSSSALQIHMRTHTGDKP 105
+ C C K FS +L +H+R HTG P
Sbjct: 12 YRCDQCGKAFSQKGSLIVHIRVHTGSGP 39
Score = 30.0 bits (66), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 44 DKPFRCTICQKAFTTKGNL 62
+KP+RC C KAF+ KG+L
Sbjct: 9 EKPYRCDQCGKAFSQKGSL 27
>pdb|2LV2|A Chain A, Solution Nmr Structure Of C2h2-Type Zinc-Fingers 4 And 5
From Human Insulinoma-Associated Protein 1 (Fragment
424-497), Northeast Structural Genomics Consortium
Target Hr7614b
Length = 85
Score = 31.6 bits (70), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 22/44 (50%)
Query: 19 HLCHVCHKNFSSSSALQIHMRTHTGDKPFRCTICQKAFTTKGNL 62
HLC VC ++F+S A + H+R + F C C F + L
Sbjct: 29 HLCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGL 72
Score = 31.6 bits (70), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 22/44 (50%)
Query: 78 HLCHVCHKNFSSSSALQIHMRTHTGDKPFRCTICQKAFTTKGNL 121
HLC VC ++F+S A + H+R + F C C F + L
Sbjct: 29 HLCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGL 72
>pdb|2LVR|A Chain A, Solution Structure Of Miz-1 Zinc Finger 8
Length = 30
Score = 31.6 bits (70), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 16 MPKHLCHVCHKNFSSSSALQIHMRTHTGDK 45
M ++C C + F+ ALQ H+R HTG+K
Sbjct: 1 MKPYVCIHCQRQFADPGALQRHVRIHTGEK 30
Score = 31.6 bits (70), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 75 MPKHLCHVCHKNFSSSSALQIHMRTHTGDK 104
M ++C C + F+ ALQ H+R HTG+K
Sbjct: 1 MKPYVCIHCQRQFADPGALQRHVRIHTGEK 30
>pdb|2EN1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
563- 595) Of Human Zinc Finger Protein 224
Length = 46
Score = 31.6 bits (70), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 21 CHVCHKNFSSSSALQIHMRTHTGDKP 46
C C K F+ +S L H R HTG+KP
Sbjct: 15 CEECGKRFTQNSQLHSHQRVHTGEKP 40
Score = 31.6 bits (70), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 80 CHVCHKNFSSSSALQIHMRTHTGDKP 105
C C K F+ +S L H R HTG+KP
Sbjct: 15 CEECGKRFTQNSQLHSHQRVHTGEKP 40
>pdb|2EM3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
640- 672) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 31.2 bits (69), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 19 HLCHVCHKNFSSSSALQIHMRTHTGDKP 46
+ C VC K F+ + L H +THTG+KP
Sbjct: 13 YECKVCSKAFTQKAHLAQHQKTHTGEKP 40
Score = 31.2 bits (69), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 78 HLCHVCHKNFSSSSALQIHMRTHTGDKP 105
+ C VC K F+ + L H +THTG+KP
Sbjct: 13 YECKVCSKAFTQKAHLAQHQKTHTGEKP 40
Score = 28.9 bits (63), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 44 DKPFRCTICQKAFTTKGNL 62
+KP+ C +C KAFT K +L
Sbjct: 10 EKPYECKVCSKAFTQKAHL 28
Score = 28.9 bits (63), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 103 DKPFRCTICQKAFTTKGNL 121
+KP+ C +C KAFT K +L
Sbjct: 10 EKPYECKVCSKAFTQKAHL 28
>pdb|2EML|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
752- 784) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 31.2 bits (69), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 19 HLCHVCHKNFSSSSALQIHMRTHTGDKP 46
+ C VC K FS +L +H R H+G KP
Sbjct: 13 YECSVCGKAFSHRQSLSVHQRIHSGKKP 40
Score = 31.2 bits (69), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 78 HLCHVCHKNFSSSSALQIHMRTHTGDKP 105
+ C VC K FS +L +H R H+G KP
Sbjct: 13 YECSVCGKAFSHRQSLSVHQRIHSGKKP 40
Score = 28.1 bits (61), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 9/23 (39%), Positives = 17/23 (73%)
Query: 103 DKPFRCTICQKAFTTKGNLKVRE 125
+KP+ C++C KAF+ + +L V +
Sbjct: 10 EKPYECSVCGKAFSHRQSLSVHQ 32
Score = 26.9 bits (58), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 8/21 (38%), Positives = 16/21 (76%)
Query: 44 DKPFRCTICQKAFTTKGNLKL 64
+KP+ C++C KAF+ + +L +
Sbjct: 10 EKPYECSVCGKAFSHRQSLSV 30
>pdb|2EMY|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
551- 583) Of Human Zinc Finger Protein 268
Length = 46
Score = 31.2 bits (69), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 16/28 (57%)
Query: 19 HLCHVCHKNFSSSSALQIHMRTHTGDKP 46
+ CH C K FS L H RTH G+KP
Sbjct: 13 YECHECGKAFSRKYQLISHQRTHAGEKP 40
Score = 31.2 bits (69), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 16/28 (57%)
Query: 78 HLCHVCHKNFSSSSALQIHMRTHTGDKP 105
+ CH C K FS L H RTH G+KP
Sbjct: 13 YECHECGKAFSRKYQLISHQRTHAGEKP 40
>pdb|2YRH|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(699- 729) From Zinc Finger Protein 473
Length = 44
Score = 31.2 bits (69), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 20 LCHVCHKNFSSSSALQIHMRTHTGDKP 46
+C+ C K F SS L H R H+G+KP
Sbjct: 12 VCNECGKTFRQSSCLSKHQRIHSGEKP 38
Score = 31.2 bits (69), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 79 LCHVCHKNFSSSSALQIHMRTHTGDKP 105
+C+ C K F SS L H R H+G+KP
Sbjct: 12 VCNECGKTFRQSSCLSKHQRIHSGEKP 38
>pdb|2EMH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
491- 523) Of Human Zinc Finger Protein 484
Length = 46
Score = 31.2 bits (69), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 19 HLCHVCHKNFSSSSALQIHMRTHTGDKP 46
++C VC K F+ S L H + HTG+KP
Sbjct: 13 YICTVCGKAFTDRSNLIKHQKIHTGEKP 40
Score = 31.2 bits (69), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 78 HLCHVCHKNFSSSSALQIHMRTHTGDKP 105
++C VC K F+ S L H + HTG+KP
Sbjct: 13 YICTVCGKAFTDRSNLIKHQKIHTGEKP 40
Score = 29.6 bits (65), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 10/19 (52%), Positives = 15/19 (78%)
Query: 44 DKPFRCTICQKAFTTKGNL 62
++P+ CT+C KAFT + NL
Sbjct: 10 ERPYICTVCGKAFTDRSNL 28
Score = 29.6 bits (65), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 10/19 (52%), Positives = 15/19 (78%)
Query: 103 DKPFRCTICQKAFTTKGNL 121
++P+ CT+C KAFT + NL
Sbjct: 10 ERPYICTVCGKAFTDRSNL 28
>pdb|2EOR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
255- 287) Of Human Zinc Finger Protein 224
Length = 46
Score = 31.2 bits (69), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 15/26 (57%)
Query: 21 CHVCHKNFSSSSALQIHMRTHTGDKP 46
C C K F S LQ H R HTG+KP
Sbjct: 15 CEECGKAFIHDSQLQEHQRIHTGEKP 40
Score = 31.2 bits (69), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 15/26 (57%)
Query: 80 CHVCHKNFSSSSALQIHMRTHTGDKP 105
C C K F S LQ H R HTG+KP
Sbjct: 15 CEECGKAFIHDSQLQEHQRIHTGEKP 40
>pdb|2ENH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
556- 588) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 31.2 bits (69), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 21 CHVCHKNFSSSSALQIHMRTHTGDKP 46
C VC K FS ++L H R H+G+KP
Sbjct: 15 CDVCRKAFSHHASLTQHQRVHSGEKP 40
Score = 31.2 bits (69), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 80 CHVCHKNFSSSSALQIHMRTHTGDKP 105
C VC K FS ++L H R H+G+KP
Sbjct: 15 CDVCRKAFSHHASLTQHQRVHSGEKP 40
Score = 26.6 bits (57), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 8/19 (42%), Positives = 14/19 (73%)
Query: 44 DKPFRCTICQKAFTTKGNL 62
+KP+ C +C+KAF+ +L
Sbjct: 10 EKPYECDVCRKAFSHHASL 28
Score = 26.6 bits (57), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 8/19 (42%), Positives = 14/19 (73%)
Query: 103 DKPFRCTICQKAFTTKGNL 121
+KP+ C +C+KAF+ +L
Sbjct: 10 EKPYECDVCRKAFSHHASL 28
>pdb|2EMP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
536- 568) Of Human Zinc Finger Protein 347
Length = 46
Score = 30.8 bits (68), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 19 HLCHVCHKNFSSSSALQIHMRTHTGDKP 46
++C+ C K FS S+L H HTG+KP
Sbjct: 13 YMCNECGKAFSVYSSLTTHQVIHTGEKP 40
Score = 30.8 bits (68), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 78 HLCHVCHKNFSSSSALQIHMRTHTGDKP 105
++C+ C K FS S+L H HTG+KP
Sbjct: 13 YMCNECGKAFSVYSSLTTHQVIHTGEKP 40
>pdb|2EMA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
312- 344) Of Human Zinc Finger Protein 347
Length = 46
Score = 30.8 bits (68), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 18 KHLCHVCHKNFSSSSALQIHMRTHTGDKP 46
++ C+ C K FS +S L H + HTG+KP
Sbjct: 12 RYKCNECGKVFSRNSQLSQHQKIHTGEKP 40
Score = 30.8 bits (68), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 77 KHLCHVCHKNFSSSSALQIHMRTHTGDKP 105
++ C+ C K FS +S L H + HTG+KP
Sbjct: 12 RYKCNECGKVFSRNSQLSQHQKIHTGEKP 40
>pdb|2YTH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
479- 511) Of Human Zinc Finger Protein 224
Length = 46
Score = 30.8 bits (68), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 21 CHVCHKNFSSSSALQIHMRTHTGDKP 46
C C K F+ +S L H R HTG+KP
Sbjct: 15 CEECGKRFTQNSHLHSHQRVHTGEKP 40
Score = 30.8 bits (68), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 80 CHVCHKNFSSSSALQIHMRTHTGDKP 105
C C K F+ +S L H R HTG+KP
Sbjct: 15 CEECGKRFTQNSHLHSHQRVHTGEKP 40
>pdb|2EL4|A Chain A, Solution Structure Of The 15th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 46
Score = 30.8 bits (68), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 16/26 (61%)
Query: 21 CHVCHKNFSSSSALQIHMRTHTGDKP 46
C C K FS S L +H R+HTG KP
Sbjct: 15 CSQCAKTFSLKSQLIVHQRSHTGVKP 40
Score = 30.8 bits (68), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 16/26 (61%)
Query: 80 CHVCHKNFSSSSALQIHMRTHTGDKP 105
C C K FS S L +H R+HTG KP
Sbjct: 15 CSQCAKTFSLKSQLIVHQRSHTGVKP 40
>pdb|2YTS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
715- 747) Of Human Zinc Finger Protein 484
Length = 46
Score = 30.4 bits (67), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 19 HLCHVCHKNFSSSSALQIHMRTHTGDKP 46
++C+ C K+F S L H R HTG+KP
Sbjct: 13 YICNECGKSFIQKSHLNRHRRIHTGEKP 40
Score = 30.4 bits (67), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 78 HLCHVCHKNFSSSSALQIHMRTHTGDKP 105
++C+ C K+F S L H R HTG+KP
Sbjct: 13 YICNECGKSFIQKSHLNRHRRIHTGEKP 40
>pdb|2YTP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
687- 719) Of Human Zinc Finger Protein 484
Length = 46
Score = 30.4 bits (67), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 21 CHVCHKNFSSSSALQIHMRTHTGDKP 46
C C K F+ S L +H R HTG+KP
Sbjct: 15 CSECGKAFARKSTLIMHQRIHTGEKP 40
Score = 30.4 bits (67), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 80 CHVCHKNFSSSSALQIHMRTHTGDKP 105
C C K F+ S L +H R HTG+KP
Sbjct: 15 CSECGKAFARKSTLIMHQRIHTGEKP 40
>pdb|2ENA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
311- 343) Of Human Zinc Finger Protein 224
Length = 46
Score = 30.0 bits (66), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 21 CHVCHKNFSSSSALQIHMRTHTGDKP 46
C C K+F SAL H HTG+KP
Sbjct: 15 CDTCDKSFRQRSALNSHRMIHTGEKP 40
Score = 30.0 bits (66), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 80 CHVCHKNFSSSSALQIHMRTHTGDKP 105
C C K+F SAL H HTG+KP
Sbjct: 15 CDTCDKSFRQRSALNSHRMIHTGEKP 40
Score = 27.3 bits (59), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 42 TGDKPFRCTICQKAFTTKGNL 62
T +KPFRC C K+F + L
Sbjct: 8 TAEKPFRCDTCDKSFRQRSAL 28
Score = 27.3 bits (59), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 101 TGDKPFRCTICQKAFTTKGNL 121
T +KPFRC C K+F + L
Sbjct: 8 TAEKPFRCDTCDKSFRQRSAL 28
>pdb|2EME|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
725- 757) Of Human Zinc Finger Protein 473
Length = 46
Score = 30.0 bits (66), Expect = 0.51, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 19 HLCHVCHKNFSSSSALQIHMRTHTGDKP 46
++C C K F S+ L H R HTG+KP
Sbjct: 13 YVCDYCGKAFGLSAELVRHQRIHTGEKP 40
Score = 30.0 bits (66), Expect = 0.51, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 78 HLCHVCHKNFSSSSALQIHMRTHTGDKP 105
++C C K F S+ L H R HTG+KP
Sbjct: 13 YVCDYCGKAFGLSAELVRHQRIHTGEKP 40
>pdb|1SRK|A Chain A, Solution Structure Of The Third Zinc Finger Domain Of
Fog-1
Length = 35
Score = 30.0 bits (66), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 12/20 (60%), Positives = 14/20 (70%)
Query: 42 TGDKPFRCTICQKAFTTKGN 61
+G +PF C IC AFTTK N
Sbjct: 3 SGKRPFVCRICLSAFTTKAN 22
Score = 30.0 bits (66), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 12/20 (60%), Positives = 14/20 (70%)
Query: 101 TGDKPFRCTICQKAFTTKGN 120
+G +PF C IC AFTTK N
Sbjct: 3 SGKRPFVCRICLSAFTTKAN 22
>pdb|2EMM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
544- 576) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 30.0 bits (66), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 19 HLCHVCHKNFSSSSALQIHMRTHTGDKP 46
H C+ C K+F S+ L H R HTG+KP
Sbjct: 13 HKCNECGKSFIQSAHLIQHQRIHTGEKP 40
Score = 30.0 bits (66), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 78 HLCHVCHKNFSSSSALQIHMRTHTGDKP 105
H C+ C K+F S+ L H R HTG+KP
Sbjct: 13 HKCNECGKSFIQSAHLIQHQRIHTGEKP 40
>pdb|2EM4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
724- 756) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 29.6 bits (65), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 19 HLCHVCHKNFSSSSALQIHMRTHTGDKP 46
+ C C K F + S+L H R+HTG+KP
Sbjct: 13 YECIECGKAFKTKSSLICHRRSHTGEKP 40
Score = 29.6 bits (65), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 78 HLCHVCHKNFSSSSALQIHMRTHTGDKP 105
+ C C K F + S+L H R+HTG+KP
Sbjct: 13 YECIECGKAFKTKSSLICHRRSHTGEKP 40
>pdb|2EP3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
631- 663) Of Human Zinc Finger Protein 484
Length = 46
Score = 29.6 bits (65), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 44 DKPFRCTICQKAFTTKGNL 62
+KP+RC C KAFT + NL
Sbjct: 10 EKPYRCAECGKAFTDRSNL 28
Score = 29.6 bits (65), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 103 DKPFRCTICQKAFTTKGNL 121
+KP+RC C KAFT + NL
Sbjct: 10 EKPYRCAECGKAFTDRSNL 28
Score = 28.1 bits (61), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 19 HLCHVCHKNFSSSSALQIHMRTHTGDKP 46
+ C C K F+ S L H + HTG+KP
Sbjct: 13 YRCAECGKAFTDRSNLFTHQKIHTGEKP 40
Score = 28.1 bits (61), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 78 HLCHVCHKNFSSSSALQIHMRTHTGDKP 105
+ C C K F+ S L H + HTG+KP
Sbjct: 13 YRCAECGKAFTDRSNLFTHQKIHTGEKP 40
>pdb|1VA1|A Chain A, Solution Structure Of Transcription Factor Sp1 Dna
Binding Domain (Zinc Finger 1)
Length = 37
Score = 29.6 bits (65), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 21/30 (70%), Gaps = 2/30 (6%)
Query: 18 KHLCHV--CHKNFSSSSALQIHMRTHTGDK 45
+H+CH+ C K + +S L+ H+R HTG++
Sbjct: 8 QHICHIQGCGKVYGKTSHLRAHLRWHTGER 37
Score = 29.6 bits (65), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 21/30 (70%), Gaps = 2/30 (6%)
Query: 77 KHLCHV--CHKNFSSSSALQIHMRTHTGDK 104
+H+CH+ C K + +S L+ H+R HTG++
Sbjct: 8 QHICHIQGCGKVYGKTSHLRAHLRWHTGER 37
>pdb|2YTK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
396- 428) Of Human Zinc Finger Protein 347
Length = 46
Score = 29.6 bits (65), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 21 CHVCHKNFSSSSALQIHMRTHTGDKP 46
C+ C K F+ +S L H R HTG+KP
Sbjct: 15 CNECGKVFTQNSHLTNHWRIHTGEKP 40
Score = 29.6 bits (65), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 80 CHVCHKNFSSSSALQIHMRTHTGDKP 105
C+ C K F+ +S L H R HTG+KP
Sbjct: 15 CNECGKVFTQNSHLTNHWRIHTGEKP 40
>pdb|2EMF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
379- 411) Of Human Zinc Finger Protein 484
Length = 46
Score = 29.3 bits (64), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 21 CHVCHKNFSSSSALQIHMRTHTGDKP 46
C C K F+ S L +H + HTG+KP
Sbjct: 15 CTECGKAFTRKSTLSMHQKIHTGEKP 40
Score = 29.3 bits (64), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 80 CHVCHKNFSSSSALQIHMRTHTGDKP 105
C C K F+ S L +H + HTG+KP
Sbjct: 15 CTECGKAFTRKSTLSMHQKIHTGEKP 40
>pdb|2EPY|A Chain A, Solution Structure Of The 10th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 268
Length = 42
Score = 29.3 bits (64), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 14 AGMPKHLCHVCHKNFSSSSALQIHMRTHTGD 44
+G H C+ C K FS S L IH R HTG+
Sbjct: 6 SGEKLHECNNCGKAFSFKSQLIIHQRIHTGE 36
Score = 29.3 bits (64), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 73 AGMPKHLCHVCHKNFSSSSALQIHMRTHTGD 103
+G H C+ C K FS S L IH R HTG+
Sbjct: 6 SGEKLHECNNCGKAFSFKSQLIIHQRIHTGE 36
>pdb|2YTA|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 3 In
Zinc Finger Protein 32
Length = 41
Score = 29.3 bits (64), Expect = 0.93, Method: Composition-based stats.
Identities = 11/25 (44%), Positives = 19/25 (76%)
Query: 101 TGDKPFRCTICQKAFTTKGNLKVRE 125
+G+KP++C C K+F+ +G+L V E
Sbjct: 6 SGEKPYQCKECGKSFSQRGSLAVHE 30
Score = 29.3 bits (64), Expect = 1.0, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 14 AGMPKHLCHVCHKNFSSSSALQIHMRTHTGDKP 46
+G + C C K+FS +L +H R HTG P
Sbjct: 6 SGEKPYQCKECGKSFSQRGSLAVHERLHTGSGP 38
Score = 29.3 bits (64), Expect = 1.0, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 73 AGMPKHLCHVCHKNFSSSSALQIHMRTHTGDKP 105
+G + C C K+FS +L +H R HTG P
Sbjct: 6 SGEKPYQCKECGKSFSQRGSLAVHERLHTGSGP 38
Score = 26.6 bits (57), Expect = 6.4, Method: Composition-based stats.
Identities = 9/23 (39%), Positives = 18/23 (78%)
Query: 42 TGDKPFRCTICQKAFTTKGNLKL 64
+G+KP++C C K+F+ +G+L +
Sbjct: 6 SGEKPYQCKECGKSFSQRGSLAV 28
>pdb|2EN4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
284- 316) Of Human Zinc Finger Protein 347
Length = 46
Score = 29.3 bits (64), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 101 TGDKPFRCTICQKAFTTKGNLKVREI 126
T +KP++C C KAF T+ NL ++
Sbjct: 8 TKEKPYKCYECGKAFRTRSNLTTHQV 33
Score = 28.5 bits (62), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 42 TGDKPFRCTICQKAFTTKGNL 62
T +KP++C C KAF T+ NL
Sbjct: 8 TKEKPYKCYECGKAFRTRSNL 28
>pdb|3IYL|X Chain X, Atomic Cryoem Structure Of A Nonenveloped Virus Suggests
How Penetration Protein Is Primed For Cell Entry
pdb|3IYL|Y Chain Y, Atomic Cryoem Structure Of A Nonenveloped Virus Suggests
How Penetration Protein Is Primed For Cell Entry
Length = 1214
Score = 29.3 bits (64), Expect = 0.99, Method: Composition-based stats.
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 19 HLCHVCHKNFSSSSALQIHMRTHTGD 44
++C+VC+ FS+ SAL H+R+ D
Sbjct: 117 YVCNVCNARFSTMSALSEHLRSDHRD 142
Score = 29.3 bits (64), Expect = 0.99, Method: Composition-based stats.
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 78 HLCHVCHKNFSSSSALQIHMRTHTGD 103
++C+VC+ FS+ SAL H+R+ D
Sbjct: 117 YVCNVCNARFSTMSALSEHLRSDHRD 142
>pdb|3K1Q|C Chain C, Backbone Model Of An Aquareovirus Virion By Cryo-Electron
Microscopy And Bioinformatics
Length = 1196
Score = 29.3 bits (64), Expect = 0.99, Method: Composition-based stats.
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 19 HLCHVCHKNFSSSSALQIHMRTHTGD 44
++C+VC+ FS+ SAL H+R+ D
Sbjct: 99 YVCNVCNARFSTMSALSEHLRSDHRD 124
Score = 29.3 bits (64), Expect = 0.99, Method: Composition-based stats.
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 78 HLCHVCHKNFSSSSALQIHMRTHTGD 103
++C+VC+ FS+ SAL H+R+ D
Sbjct: 99 YVCNVCNARFSTMSALSEHLRSDHRD 124
>pdb|1ARE|A Chain A, Structures Of Dna-Binding Mutant Zinc Finger Domains:
Implications For Dna Binding
Length = 29
Score = 29.3 bits (64), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 20 LCHVCHKNFSSSSALQIHMRTHTGDK 45
+C VC + F+ AL+ H R+HT +K
Sbjct: 4 VCEVCTRAFARQEALKRHYRSHTNEK 29
Score = 29.3 bits (64), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 79 LCHVCHKNFSSSSALQIHMRTHTGDK 104
+C VC + F+ AL+ H R+HT +K
Sbjct: 4 VCEVCTRAFARQEALKRHYRSHTNEK 29
>pdb|2EPU|A Chain A, Solution Structure Of The Secound C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 32
Length = 45
Score = 29.3 bits (64), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 12/19 (63%), Positives = 13/19 (68%)
Query: 44 DKPFRCTICQKAFTTKGNL 62
KPF CT C K+F KGNL
Sbjct: 10 QKPFECTHCGKSFRAKGNL 28
Score = 29.3 bits (64), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 12/19 (63%), Positives = 13/19 (68%)
Query: 103 DKPFRCTICQKAFTTKGNL 121
KPF CT C K+F KGNL
Sbjct: 10 QKPFECTHCGKSFRAKGNL 28
>pdb|2EMK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
668- 700) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 29.3 bits (64), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 19 HLCHVCHKNFSSSSALQIHMRTHTGDKP 46
+ C C K FS ++ L H R HTG+KP
Sbjct: 13 YECKECGKAFSQTTHLIQHQRVHTGEKP 40
Score = 29.3 bits (64), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 78 HLCHVCHKNFSSSSALQIHMRTHTGDKP 105
+ C C K FS ++ L H R HTG+KP
Sbjct: 13 YECKECGKAFSQTTHLIQHQRVHTGEKP 40
>pdb|2EOK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
441- 469) Of Human Zinc Finger Protein 268
Length = 42
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 101 TGDKPFRCTICQKAFTTKGNLKVRE 125
+G+KP+ C+ C KAFT K L V +
Sbjct: 6 SGEKPYVCSDCGKAFTFKSQLIVHQ 30
Score = 28.1 bits (61), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 42 TGDKPFRCTICQKAFTTKGNL 62
+G+KP+ C+ C KAFT K L
Sbjct: 6 SGEKPYVCSDCGKAFTFKSQL 26
>pdb|2M0F|A Chain A, Solution Structure Of Miz-1 Zinc Finger 7
Length = 29
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 21 CHVCHKNFSSSSALQIHMRTHTGDK 45
C C K F++S L+ H+R H+G+K
Sbjct: 5 CRECGKQFTTSGNLKRHLRIHSGEK 29
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 80 CHVCHKNFSSSSALQIHMRTHTGDK 104
C C K F++S L+ H+R H+G+K
Sbjct: 5 CRECGKQFTTSGNLKRHLRIHSGEK 29
Score = 28.5 bits (62), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Query: 105 PFRCTICQKAFTTKGNLKVREIEINIGSQ 133
P +C C K FTT GNLK R + I+ G +
Sbjct: 2 PLKCRECGKQFTTSGNLK-RHLRIHSGEK 29
Score = 27.3 bits (59), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 11/18 (61%), Positives = 12/18 (66%)
Query: 46 PFRCTICQKAFTTKGNLK 63
P +C C K FTT GNLK
Sbjct: 2 PLKCRECGKQFTTSGNLK 19
>pdb|2LVT|A Chain A, Solution Structure Of Miz-1 Zinc Finger 9
Length = 29
Score = 28.9 bits (63), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 21 CHVCHKNFSSSSALQIHMRTHTGDK 45
C +C K F+ +S+L H+R HTG+K
Sbjct: 5 CVMCGKAFTQASSLIAHVRQHTGEK 29
Score = 28.9 bits (63), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 80 CHVCHKNFSSSSALQIHMRTHTGDK 104
C +C K F+ +S+L H+R HTG+K
Sbjct: 5 CVMCGKAFTQASSLIAHVRQHTGEK 29
>pdb|2EP1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
435- 467) Of Human Zinc Finger Protein 484
Length = 46
Score = 28.9 bits (63), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 19 HLCHVCHKNFSSSSALQIHMRTHTGDKP 46
+ C C K+F S L +H R HTG+ P
Sbjct: 13 YECSDCGKSFIKKSQLHVHQRIHTGENP 40
Score = 28.9 bits (63), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 78 HLCHVCHKNFSSSSALQIHMRTHTGDKP 105
+ C C K+F S L +H R HTG+ P
Sbjct: 13 YECSDCGKSFIKKSQLHVHQRIHTGENP 40
>pdb|2EN0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
385- 413) Of Human Zinc Finger Protein 268
Length = 42
Score = 28.9 bits (63), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 14 AGMPKHLCHVCHKNFSSSSALQIHMRTHTGD 44
+G ++C+ C K F S L IH R HTG+
Sbjct: 6 SGQKPYVCNECGKAFGLKSQLIIHERIHTGE 36
Score = 28.9 bits (63), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 73 AGMPKHLCHVCHKNFSSSSALQIHMRTHTGD 103
+G ++C+ C K F S L IH R HTG+
Sbjct: 6 SGQKPYVCNECGKAFGLKSQLIIHERIHTGE 36
Score = 26.9 bits (58), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Query: 101 TGDKPFRCTICQKAFTTKGNLKVREIEINIGSQLPKKA 138
+G KP+ C C KAF K L + E I+ G P
Sbjct: 6 SGQKPYVCNECGKAFGLKSQLIIHE-RIHTGESGPSSG 42
>pdb|2YRJ|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(781- 813) From Zinc Finger Protein 473
Length = 46
Score = 28.9 bits (63), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 19 HLCHVCHKNFSSSSALQIHMRTHTGDKP 46
+ C C K F+ + L H R HTG+KP
Sbjct: 13 YRCGECGKAFAQKANLTQHQRIHTGEKP 40
Score = 28.9 bits (63), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 78 HLCHVCHKNFSSSSALQIHMRTHTGDKP 105
+ C C K F+ + L H R HTG+KP
Sbjct: 13 YRCGECGKAFAQKANLTQHQRIHTGEKP 40
Score = 28.9 bits (63), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 13/19 (68%)
Query: 44 DKPFRCTICQKAFTTKGNL 62
+KP+RC C KAF K NL
Sbjct: 10 EKPYRCGECGKAFAQKANL 28
Score = 28.9 bits (63), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 13/19 (68%)
Query: 103 DKPFRCTICQKAFTTKGNL 121
+KP+RC C KAF K NL
Sbjct: 10 EKPYRCGECGKAFAQKANL 28
>pdb|2ENE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
592- 624) Of Human Zinc Finger Protein 347
Length = 46
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 21 CHVCHKNFSSSSALQIHMRTHTGDKP 46
C+ C K F +S L H R HTG+KP
Sbjct: 15 CNECGKVFRHNSYLSRHQRIHTGEKP 40
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 80 CHVCHKNFSSSSALQIHMRTHTGDKP 105
C+ C K F +S L H R HTG+KP
Sbjct: 15 CNECGKVFRHNSYLSRHQRIHTGEKP 40
>pdb|2YTO|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
659- 691) Of Human Zinc Finger Protein 484
Length = 46
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 103 DKPFRCTICQKAFTTKGNLKVRE 125
+KP++C+ C KAFT K L + +
Sbjct: 10 EKPYKCSDCGKAFTRKSGLHIHQ 32
Score = 28.1 bits (61), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 15/21 (71%)
Query: 44 DKPFRCTICQKAFTTKGNLKL 64
+KP++C+ C KAFT K L +
Sbjct: 10 EKPYKCSDCGKAFTRKSGLHI 30
Score = 27.7 bits (60), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 21 CHVCHKNFSSSSALQIHMRTHTGDK 45
C C K F+ S L IH ++HTG++
Sbjct: 15 CSDCGKAFTRKSGLHIHQQSHTGER 39
Score = 27.7 bits (60), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 80 CHVCHKNFSSSSALQIHMRTHTGDK 104
C C K F+ S L IH ++HTG++
Sbjct: 15 CSDCGKAFTRKSGLHIHQQSHTGER 39
>pdb|2EM0|A Chain A, Solution Structure Of The 18th Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 28.5 bits (62), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 21 CHVCHKNFSSSSALQIHMRTHTGDKP 46
C C FS +S+L++H H G+KP
Sbjct: 15 CRECDMCFSQASSLRLHQNVHVGEKP 40
Score = 28.5 bits (62), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 80 CHVCHKNFSSSSALQIHMRTHTGDKP 105
C C FS +S+L++H H G+KP
Sbjct: 15 CRECDMCFSQASSLRLHQNVHVGEKP 40
>pdb|2YSP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
507- 539) Of Human Zinc Finger Protein 224
Length = 46
Score = 28.5 bits (62), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 19 HLCHVCHKNFSSSSALQIHMRTHTGDKP 46
+ C C K ++S L +H + HTG++P
Sbjct: 13 YKCEKCGKGYNSKFNLDMHQKVHTGERP 40
Score = 28.5 bits (62), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 78 HLCHVCHKNFSSSSALQIHMRTHTGDKP 105
+ C C K ++S L +H + HTG++P
Sbjct: 13 YKCEKCGKGYNSKFNLDMHQKVHTGERP 40
>pdb|1SP2|A Chain A, Nmr Structure Of A Zinc Finger Domain From Transcription
Factor Sp1f2, Minimized Average Structure
pdb|1VA2|A Chain A, Solution Structure Of Transcription Factor Sp1 Dna
Binding Domain (Zinc Finger 2)
Length = 31
Score = 28.5 bits (62), Expect = 1.6, Method: Composition-based stats.
Identities = 13/22 (59%), Positives = 15/22 (68%)
Query: 24 CHKNFSSSSALQIHMRTHTGDK 45
C K F+ S LQ H RTHTG+K
Sbjct: 10 CGKRFTRSDELQRHKRTHTGEK 31
Score = 28.5 bits (62), Expect = 1.6, Method: Composition-based stats.
Identities = 13/22 (59%), Positives = 15/22 (68%)
Query: 83 CHKNFSSSSALQIHMRTHTGDK 104
C K F+ S LQ H RTHTG+K
Sbjct: 10 CGKRFTRSDELQRHKRTHTGEK 31
>pdb|2ENC|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
395- 427) Of Human Zinc Finger Protein 224
Length = 46
Score = 28.5 bits (62), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 21 CHVCHKNFSSSSALQIHMRTHTGDKP 46
C C K F ++S H R+H+G+KP
Sbjct: 15 CEECGKGFYTNSQCYSHQRSHSGEKP 40
Score = 28.5 bits (62), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 80 CHVCHKNFSSSSALQIHMRTHTGDKP 105
C C K F ++S H R+H+G+KP
Sbjct: 15 CEECGKGFYTNSQCYSHQRSHSGEKP 40
>pdb|2ELQ|A Chain A, Solution Structure Of The 14th C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 28.5 bits (62), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 15/20 (75%)
Query: 104 KPFRCTICQKAFTTKGNLKV 123
KPF+C++C+ A +K NLK
Sbjct: 8 KPFKCSLCEYATRSKSNLKA 27
Score = 28.1 bits (61), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 10/19 (52%), Positives = 15/19 (78%)
Query: 45 KPFRCTICQKAFTTKGNLK 63
KPF+C++C+ A +K NLK
Sbjct: 8 KPFKCSLCEYATRSKSNLK 26
>pdb|2EOV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
519- 551) Of Human Zinc Finger Protein 484
Length = 46
Score = 28.5 bits (62), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 9/21 (42%), Positives = 16/21 (76%)
Query: 103 DKPFRCTICQKAFTTKGNLKV 123
+KP++C+ C K+FT K L++
Sbjct: 10 EKPYKCSDCGKSFTWKSRLRI 30
Score = 28.1 bits (61), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 9/21 (42%), Positives = 16/21 (76%)
Query: 44 DKPFRCTICQKAFTTKGNLKL 64
+KP++C+ C K+FT K L++
Sbjct: 10 EKPYKCSDCGKSFTWKSRLRI 30
Score = 27.7 bits (60), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 21 CHVCHKNFSSSSALQIHMRTHTGDK 45
C C K+F+ S L+IH + HTG++
Sbjct: 15 CSDCGKSFTWKSRLRIHQKCHTGER 39
Score = 27.7 bits (60), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 80 CHVCHKNFSSSSALQIHMRTHTGDK 104
C C K+F+ S L+IH + HTG++
Sbjct: 15 CSDCGKSFTWKSRLRIHQKCHTGER 39
>pdb|2EM1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
637- 667) Of Human Zinc Finger Protein 268
Length = 44
Score = 28.5 bits (62), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 101 TGDKPFRCTICQKAFTTKGNLKV 123
+G+KP+ C C KAFT K L V
Sbjct: 6 SGEKPYSCNECGKAFTFKSQLIV 28
Score = 27.7 bits (60), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 42 TGDKPFRCTICQKAFTTKGNL 62
+G+KP+ C C KAFT K L
Sbjct: 6 SGEKPYSCNECGKAFTFKSQL 26
Score = 26.6 bits (57), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 14 AGMPKHLCHVCHKNFSSSSALQIHMRTHTGDKP 46
+G + C+ C K F+ S L +H HTG KP
Sbjct: 6 SGEKPYSCNECGKAFTFKSQLIVHKGVHTGVKP 38
Score = 26.6 bits (57), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 73 AGMPKHLCHVCHKNFSSSSALQIHMRTHTGDKP 105
+G + C+ C K F+ S L +H HTG KP
Sbjct: 6 SGEKPYSCNECGKAFTFKSQLIVHKGVHTGVKP 38
>pdb|2EL6|A Chain A, Solution Structure Of The 21th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 46
Score = 28.5 bits (62), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 21 CHVCHKNFSSSSALQIHMRTHTGDKP 46
C C K+FS L +H R HT +KP
Sbjct: 15 CSQCEKSFSGKLRLLVHQRMHTREKP 40
Score = 28.5 bits (62), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 80 CHVCHKNFSSSSALQIHMRTHTGDKP 105
C C K+FS L +H R HT +KP
Sbjct: 15 CSQCEKSFSGKLRLLVHQRMHTREKP 40
>pdb|1UN6|B Chain B, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|1UN6|C Chain C, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|1UN6|D Chain D, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|2HGH|A Chain A, Transcription Factor Iiia Zinc Fingers 4-6 Bound To 5s
Rrna 55mer (Nmr Structure)
Length = 87
Score = 28.5 bits (62), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Query: 78 HLCHV--CHKNFSSSSALQIHMRTHTGDKPFRC--TICQKAFTTKGNLKVRE 125
++CH C K F + L++H +HT P+ C C K F+ LK E
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHE 53
Score = 27.3 bits (59), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
Query: 19 HLCHV--CHKNFSSSSALQIHMRTHTGDKPFRC--TICQKAFTTKGNLK 63
++CH C K F + L++H +HT P+ C C K F+ LK
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLK 50
>pdb|2EQ3|A Chain A, Solution Structure Of The 17th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 28.5 bits (62), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 19 HLCHVCHKNFSSSSALQIHMRTHTGDKP 46
+ C+ C K FS S+L H HTG KP
Sbjct: 13 YECNQCGKAFSVRSSLTTHQAIHTGKKP 40
Score = 28.5 bits (62), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 78 HLCHVCHKNFSSSSALQIHMRTHTGDKP 105
+ C+ C K FS S+L H HTG KP
Sbjct: 13 YECNQCGKAFSVRSSLTTHQAIHTGKKP 40
>pdb|2J7J|A Chain A, Invariance Of The Zinc Finger Module: A Comparison Of The
Free Structure With Those In Nucleic-Acid Complexes
Length = 85
Score = 28.1 bits (61), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Query: 78 HLCHV--CHKNFSSSSALQIHMRTHTGDKPFRC--TICQKAFTTKGNLKVRE 125
++CH C K F + L++H +HT P+ C C K F+ LK E
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHE 53
Score = 27.3 bits (59), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
Query: 19 HLCHV--CHKNFSSSSALQIHMRTHTGDKPFRC--TICQKAFTTKGNLK 63
++CH C K F + L++H +HT P+ C C K F+ LK
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLK 50
>pdb|2EJ4|A Chain A, Functional And Structural Basis Of Nuclear Localization
Signal In Zic3 Zinc Finger Domain: A Role Of Conserved
Tryptophan Residue In The Zinc Finger Domain
Length = 95
Score = 28.1 bits (61), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 10/61 (16%)
Query: 52 CQKAFTTKGNLKLIPNAVFNVAGMPKHLCHVCH--------KNFSSSSALQIHMRTHTGD 103
C + F+T +L+ + G P+ HVC+ K+F + L H+R HTG+
Sbjct: 31 CDRTFSTM--HELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGE 88
Query: 104 K 104
K
Sbjct: 89 K 89
Score = 26.6 bits (57), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 8/50 (16%)
Query: 4 KLIPNAVFNVAGMPKHLCHVCH--------KNFSSSSALQIHMRTHTGDK 45
+L+ + G P+ HVC+ K+F + L H+R HTG+K
Sbjct: 40 ELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEK 89
>pdb|2YU8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
648- 680) Of Human Zinc Finger Protein 347
Length = 46
Score = 28.1 bits (61), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 21 CHVCHKNFSSSSALQIHMRTHTGDKP 46
C+ C K F+ +S L H R HTG KP
Sbjct: 15 CNECGKVFTQNSHLARHRRVHTGGKP 40
Score = 28.1 bits (61), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 80 CHVCHKNFSSSSALQIHMRTHTGDKP 105
C+ C K F+ +S L H R HTG KP
Sbjct: 15 CNECGKVFTQNSHLARHRRVHTGGKP 40
>pdb|2EMI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
547- 579) Of Human Zinc Finger Protein 484
Length = 46
Score = 28.1 bits (61), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 21 CHVCHKNFSSSSALQIHMRTHTGDKP 46
C C K F S L +H R H G+KP
Sbjct: 15 CSECGKAFIQKSTLSMHQRIHRGEKP 40
Score = 28.1 bits (61), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 80 CHVCHKNFSSSSALQIHMRTHTGDKP 105
C C K F S L +H R H G+KP
Sbjct: 15 CSECGKAFIQKSTLSMHQRIHRGEKP 40
>pdb|2EQ0|A Chain A, Solution Structure Of The 8th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 27.7 bits (60), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 21 CHVCHKNFSSSSALQIHMRTHTGDKP 46
CH C K F +S L H HTG+KP
Sbjct: 15 CHECGKVFRRNSHLARHQLIHTGEKP 40
Score = 27.7 bits (60), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 80 CHVCHKNFSSSSALQIHMRTHTGDKP 105
CH C K F +S L H HTG+KP
Sbjct: 15 CHECGKVFRRNSHLARHQLIHTGEKP 40
>pdb|2EPT|A Chain A, Solution Structure Of The First C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 32
Length = 41
Score = 27.7 bits (60), Expect = 2.9, Method: Composition-based stats.
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 14 AGMPKHLCHVCHKNFSSSSALQIHMRTHTGDKP 46
+G + C C K+F +L +H R HTG P
Sbjct: 6 SGQRVYECQECGKSFRQKGSLTLHERIHTGSGP 38
Score = 27.7 bits (60), Expect = 2.9, Method: Composition-based stats.
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 73 AGMPKHLCHVCHKNFSSSSALQIHMRTHTGDKP 105
+G + C C K+F +L +H R HTG P
Sbjct: 6 SGQRVYECQECGKSFRQKGSLTLHERIHTGSGP 38
>pdb|2EOL|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
581- 609) Of Human Zinc Finger Protein 268
Length = 42
Score = 27.7 bits (60), Expect = 2.9, Method: Composition-based stats.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 14 AGMPKHLCHVCHKNFSSSSALQIHMRTHTGD 44
+G + C C K F S L IH RTHTG+
Sbjct: 6 SGEKPYECTDCGKAFGLKSQLIIHQRTHTGE 36
Score = 27.7 bits (60), Expect = 2.9, Method: Composition-based stats.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 73 AGMPKHLCHVCHKNFSSSSALQIHMRTHTGD 103
+G + C C K F S L IH RTHTG+
Sbjct: 6 SGEKPYECTDCGKAFGLKSQLIIHQRTHTGE 36
Score = 27.3 bits (59), Expect = 3.8, Method: Composition-based stats.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 101 TGDKPFRCTICQKAFTTKGNLKVRE 125
+G+KP+ CT C KAF K L + +
Sbjct: 6 SGEKPYECTDCGKAFGLKSQLIIHQ 30
Score = 26.9 bits (58), Expect = 5.6, Method: Composition-based stats.
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 42 TGDKPFRCTICQKAFTTKGNL 62
+G+KP+ CT C KAF K L
Sbjct: 6 SGEKPYECTDCGKAFGLKSQL 26
>pdb|2EMG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
463- 495) Of Human Zinc Finger Protein 484
Length = 46
Score = 27.7 bits (60), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 20 LCHVCHKNFSSSSALQIHMRTHTGDKP 46
+C C K F+ + L IH + HTG++P
Sbjct: 14 ICSECGKVFTHKTNLIIHQKIHTGERP 40
Score = 27.7 bits (60), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 79 LCHVCHKNFSSSSALQIHMRTHTGDKP 105
+C C K F+ + L IH + HTG++P
Sbjct: 14 ICSECGKVFTHKTNLIIHQKIHTGERP 40
>pdb|2EM2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
584- 616) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 27.3 bits (59), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 21 CHVCHKNFSSSSALQIHMRTHTGDKP 46
C C K F + L H+R HTG+KP
Sbjct: 15 CKECGKAFRQNIHLASHLRIHTGEKP 40
Score = 27.3 bits (59), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 80 CHVCHKNFSSSSALQIHMRTHTGDKP 105
C C K F + L H+R HTG+KP
Sbjct: 15 CKECGKAFRQNIHLASHLRIHTGEKP 40
>pdb|2EQW|A Chain A, Solution Structure Of The 6th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 484
Length = 42
Score = 27.3 bits (59), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 101 TGDKPFRCTICQKAFTTKGNLKVREIEINIGSQLPKKA 138
+G+KP+ CT C KAF K + E I+ G P
Sbjct: 6 SGEKPYVCTECGKAFIRKSHFITHE-RIHTGESGPSSG 42
Score = 26.2 bits (56), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 10/18 (55%), Positives = 13/18 (72%)
Query: 42 TGDKPFRCTICQKAFTTK 59
+G+KP+ CT C KAF K
Sbjct: 6 SGEKPYVCTECGKAFIRK 23
>pdb|2EM9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
367- 399) Of Human Zinc Finger Protein 224
Length = 46
Score = 27.3 bits (59), Expect = 3.7, Method: Composition-based stats.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 21 CHVCHKNFSSSSALQIHMRTHTGDKP 46
C C K+F +S L H R H+G+KP
Sbjct: 15 CKECGKSFRWASCLLKHQRVHSGEKP 40
Score = 27.3 bits (59), Expect = 3.7, Method: Composition-based stats.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 80 CHVCHKNFSSSSALQIHMRTHTGDKP 105
C C K+F +S L H R H+G+KP
Sbjct: 15 CKECGKSFRWASCLLKHQRVHSGEKP 40
>pdb|2EPZ|A Chain A, Solution Structure Of The 4th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 28 Homolog
Length = 46
Score = 27.3 bits (59), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 14/26 (53%)
Query: 21 CHVCHKNFSSSSALQIHMRTHTGDKP 46
C C K FS L H R HTG+KP
Sbjct: 15 CIDCGKAFSDHIGLNQHRRIHTGEKP 40
Score = 27.3 bits (59), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 14/26 (53%)
Query: 80 CHVCHKNFSSSSALQIHMRTHTGDKP 105
C C K FS L H R HTG+KP
Sbjct: 15 CIDCGKAFSDHIGLNQHRRIHTGEKP 40
>pdb|2ELR|A Chain A, Solution Structure Of The 15th C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 27.3 bits (59), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 19 HLCHVCHKNFSSSSALQIHMRTHTGD 44
HLC +C K F S L+ H HT D
Sbjct: 10 HLCDMCGKKFKSKGTLKSHKLLHTAD 35
Score = 27.3 bits (59), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 78 HLCHVCHKNFSSSSALQIHMRTHTGD 103
HLC +C K F S L+ H HT D
Sbjct: 10 HLCDMCGKKFKSKGTLKSHKLLHTAD 35
>pdb|2WBT|A Chain A, The Structure Of A Double C2h2 Zinc Finger Protein From A
Hyperthermophilic Archaeal Virus In The Absence Of Dna
pdb|2WBT|B Chain B, The Structure Of A Double C2h2 Zinc Finger Protein From A
Hyperthermophilic Archaeal Virus In The Absence Of Dna
Length = 129
Score = 27.3 bits (59), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 15 GMPKHLCHVCHKNFSSSSALQIHMRTHTGDKPFRCTICQKAFTTKGN 61
+ + +C +C FSSS +L+ H+R K C +C+K FT+ +
Sbjct: 71 AISQFVCPLCLMPFSSSVSLKQHIRYTEHTKV--CPVCKKEFTSTDS 115
Score = 27.3 bits (59), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 74 GMPKHLCHVCHKNFSSSSALQIHMRTHTGDKPFRCTICQKAFTTKGN 120
+ + +C +C FSSS +L+ H+R K C +C+K FT+ +
Sbjct: 71 AISQFVCPLCLMPFSSSVSLKQHIRYTEHTKV--CPVCKKEFTSTDS 115
>pdb|2EOM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
341- 373) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 26.9 bits (58), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 15/28 (53%)
Query: 19 HLCHVCHKNFSSSSALQIHMRTHTGDKP 46
H C C K F +S H R HTG+KP
Sbjct: 13 HRCSDCGKFFLQASNFIQHRRIHTGEKP 40
Score = 26.9 bits (58), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 15/28 (53%)
Query: 78 HLCHVCHKNFSSSSALQIHMRTHTGDKP 105
H C C K F +S H R HTG+KP
Sbjct: 13 HRCSDCGKFFLQASNFIQHRRIHTGEKP 40
>pdb|2EOE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
508- 540) Of Human Zinc Finger Protein 347
Length = 46
Score = 26.9 bits (58), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 21 CHVCHKNFSSSSALQIHMRTHTGDKP 46
C+ C K F+ +S L H R HTG KP
Sbjct: 15 CNECGKVFTQNSHLANHQRIHTGVKP 40
Score = 26.9 bits (58), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 80 CHVCHKNFSSSSALQIHMRTHTGDKP 105
C+ C K F+ +S L H R HTG KP
Sbjct: 15 CNECGKVFTQNSHLANHQRIHTGVKP 40
>pdb|2EQ4|A Chain A, Solution Structure Of The 11th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 224
Length = 46
Score = 26.9 bits (58), Expect = 4.9, Method: Composition-based stats.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 21 CHVCHKNFSSSSALQIHMRTHTGDKP 46
C C K+FS + L H R H+G+KP
Sbjct: 15 CKECGKSFSRAPCLLKHERLHSGEKP 40
Score = 26.9 bits (58), Expect = 4.9, Method: Composition-based stats.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 80 CHVCHKNFSSSSALQIHMRTHTGDKP 105
C C K+FS + L H R H+G+KP
Sbjct: 15 CKECGKSFSRAPCLLKHERLHSGEKP 40
>pdb|1P7A|A Chain A, Solution Stucture Of The Third Zinc Finger From Bklf
Length = 37
Score = 26.9 bits (58), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 39 RTHTGDKPFRCTICQKAFTTKGNLKL 64
R TG KPF+C C ++F+ +L L
Sbjct: 4 RGSTGIKPFQCPDCDRSFSRSDHLAL 29
>pdb|2EPS|A Chain A, Solution Structure Of The 4th Zinc Finger Domain Of Zinc
Finger Protein 278
Length = 54
Score = 26.6 bits (57), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 19 HLCHVCHKNFSSSSALQIHMR-THTGDKPFRCTI 51
++C C K FS L H++ HT ++P +C +
Sbjct: 13 YICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV 46
Score = 26.6 bits (57), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 78 HLCHVCHKNFSSSSALQIHMR-THTGDKPFRCTI 110
++C C K FS L H++ HT ++P +C +
Sbjct: 13 YICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV 46
>pdb|2KVF|A Chain A, Structure Of The Three-Cys2his2 Domain Of Mouse Testis
Zinc Finger Protein
Length = 28
Score = 26.6 bits (57), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 16 MPKHLCHVCHKNFSSSSALQIHMRTHTG 43
M + C VC K FS ++ H R HTG
Sbjct: 1 MRPYSCSVCGKRFSLKHQMETHYRVHTG 28
Score = 26.6 bits (57), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 75 MPKHLCHVCHKNFSSSSALQIHMRTHTG 102
M + C VC K FS ++ H R HTG
Sbjct: 1 MRPYSCSVCGKRFSLKHQMETHYRVHTG 28
>pdb|2EQ1|A Chain A, Solution Structure Of The 9th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 26.6 bits (57), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 21 CHVCHKNFSSSSALQIHMRTHTGDKP 46
C+ C K F + S L H HTG+KP
Sbjct: 15 CNECGKAFRAHSNLTTHQVIHTGEKP 40
Score = 26.6 bits (57), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 80 CHVCHKNFSSSSALQIHMRTHTGDKP 105
C+ C K F + S L H HTG+KP
Sbjct: 15 CNECGKAFRAHSNLTTHQVIHTGEKP 40
Score = 26.2 bits (56), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 103 DKPFRCTICQKAFTTKGNLKVREI 126
+KP++C C KAF NL ++
Sbjct: 10 EKPYKCNECGKAFRAHSNLTTHQV 33
>pdb|2ELS|A Chain A, Solution Structure Of The 2nd C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 26.6 bits (57), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 21 CHVCHKNFSSSSALQIHMRTHTGDK 45
C C+K F +LQ H+R HT +K
Sbjct: 12 CEYCNKVFKFKHSLQAHLRIHTNEK 36
Score = 26.6 bits (57), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 80 CHVCHKNFSSSSALQIHMRTHTGDK 104
C C+K F +LQ H+R HT +K
Sbjct: 12 CEYCNKVFKFKHSLQAHLRIHTNEK 36
>pdb|3ZNF|A Chain A, High-Resolution Three-Dimensional Structure Of A Single
Zinc Finger From A Human Enhancer Binding Protein In
Solution
pdb|4ZNF|A Chain A, High-Resolution Three-Dimensional Structure Of A Single
Zinc Finger From A Human Enhancer Binding Protein In
Solution
Length = 30
Score = 26.6 bits (57), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 45 KPFRCTICQKAFTTKGNL 62
+P+ C+ C +F TKGNL
Sbjct: 1 RPYHCSYCNFSFKTKGNL 18
Score = 26.6 bits (57), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 104 KPFRCTICQKAFTTKGNL 121
+P+ C+ C +F TKGNL
Sbjct: 1 RPYHCSYCNFSFKTKGNL 18
>pdb|2YTG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
369- 401) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 26.6 bits (57), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 21 CHVCHKNFSSSSALQIHMRTHTGDKP 46
C C K+++ L H R HTG+KP
Sbjct: 15 CGECGKSYNQRVHLTQHQRVHTGEKP 40
Score = 26.6 bits (57), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 80 CHVCHKNFSSSSALQIHMRTHTGDKP 105
C C K+++ L H R HTG+KP
Sbjct: 15 CGECGKSYNQRVHLTQHQRVHTGEKP 40
>pdb|2EMV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
859- 889) Of Human Zinc Finger Protein 268
Length = 44
Score = 26.2 bits (56), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 19 HLCHVCHKNFSSSSALQIHMRTHTGD 44
+ C C K F +S L +H RTH+G+
Sbjct: 13 YECSECGKAFIRNSQLIVHQRTHSGE 38
Score = 26.2 bits (56), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 78 HLCHVCHKNFSSSSALQIHMRTHTGD 103
+ C C K F +S L +H RTH+G+
Sbjct: 13 YECSECGKAFIRNSQLIVHQRTHSGE 38
>pdb|2YTJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
771- 803) Of Human Zinc Finger Protein 484
Length = 46
Score = 26.2 bits (56), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 44 DKPFRCTICQKAFTTKGNL 62
+KP+ C C KAFT + NL
Sbjct: 10 EKPYICAECGKAFTIRSNL 28
Score = 26.2 bits (56), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 103 DKPFRCTICQKAFTTKGNL 121
+KP+ C C KAFT + NL
Sbjct: 10 EKPYICAECGKAFTIRSNL 28
>pdb|2EON|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
397- 429) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 26.2 bits (56), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 21 CHVCHKNFSSSSALQIHMRTHTGDKP 46
C VC K F SS L H H+G++P
Sbjct: 15 CQVCGKAFRVSSHLVQHHSVHSGERP 40
Score = 26.2 bits (56), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 80 CHVCHKNFSSSSALQIHMRTHTGDKP 105
C VC K F SS L H H+G++P
Sbjct: 15 CQVCGKAFRVSSHLVQHHSVHSGERP 40
>pdb|2EOQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
283- 315) Of Human Zinc Finger Protein 224
Length = 46
Score = 26.2 bits (56), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 21 CHVCHKNFSSSSALQIHMRTHTGDKP 46
C +C K+F S L H HT +KP
Sbjct: 15 CDICGKSFCGRSRLNRHSMVHTAEKP 40
Score = 26.2 bits (56), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 80 CHVCHKNFSSSSALQIHMRTHTGDKP 105
C +C K+F S L H HT +KP
Sbjct: 15 CDICGKSFCGRSRLNRHSMVHTAEKP 40
>pdb|2YTM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
696- 728) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 26.2 bits (56), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 19 HLCHVCHKNFSSSSALQIHMRTHTGDKP 46
+ C C K F +S+ H R HTG +P
Sbjct: 13 YKCMECGKAFGDNSSCTQHQRLHTGQRP 40
Score = 26.2 bits (56), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 78 HLCHVCHKNFSSSSALQIHMRTHTGDKP 105
+ C C K F +S+ H R HTG +P
Sbjct: 13 YKCMECGKAFGDNSSCTQHQRLHTGQRP 40
>pdb|1ARD|A Chain A, Structures Of Dna-Binding Mutant Zinc Finger Domains:
Implications For Dna Binding
Length = 29
Score = 26.2 bits (56), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 20 LCHVCHKNFSSSSALQIHMRTHTGDK 45
+C VC + F+ L+ H R+HT +K
Sbjct: 4 VCEVCTRAFARQEHLKRHYRSHTNEK 29
Score = 26.2 bits (56), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 79 LCHVCHKNFSSSSALQIHMRTHTGDK 104
+C VC + F+ L+ H R+HT +K
Sbjct: 4 VCEVCTRAFARQEHLKRHYRSHTNEK 29
>pdb|2YTN|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
732- 764) Of Human Zinc Finger Protein 347
Length = 46
Score = 26.2 bits (56), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 21 CHVCHKNFSSSSALQIHMRTHTGDKP 46
C+ C K F+ +S L H HTG+KP
Sbjct: 15 CNECGKVFTQNSHLARHRGIHTGEKP 40
Score = 26.2 bits (56), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 80 CHVCHKNFSSSSALQIHMRTHTGDKP 105
C+ C K F+ +S L H HTG+KP
Sbjct: 15 CNECGKVFTQNSHLARHRGIHTGEKP 40
>pdb|2YTI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
564- 596) Of Human Zinc Finger Protein 347
Length = 46
Score = 26.2 bits (56), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 21 CHVCHKNFSSSSALQIHMRTHTGDKP 46
C+ C K F+ +S L H HTG+KP
Sbjct: 15 CNECGKVFTQNSHLARHRGIHTGEKP 40
Score = 26.2 bits (56), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 80 CHVCHKNFSSSSALQIHMRTHTGDKP 105
C+ C K F+ +S L H HTG+KP
Sbjct: 15 CNECGKVFTQNSHLARHRGIHTGEKP 40
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.133 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,654,875
Number of Sequences: 62578
Number of extensions: 174689
Number of successful extensions: 1113
Number of sequences better than 100.0: 170
Number of HSP's better than 100.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 446
Number of HSP's gapped (non-prelim): 619
length of query: 159
length of database: 14,973,337
effective HSP length: 91
effective length of query: 68
effective length of database: 9,278,739
effective search space: 630954252
effective search space used: 630954252
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.7 bits)