RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9695
(159 letters)
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 124
Score = 104 bits (262), Expect = 8e-30
Identities = 37/103 (35%), Positives = 52/103 (50%)
Query: 21 CHVCHKNFSSSSALQIHMRTHTGDKPFRCTICQKAFTTKGNLKLIPNAVFNVAGMPKHLC 80
C CHK F S L++H R HTG+KPF C C K + K NL C
Sbjct: 10 CPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTC 69
Query: 81 HVCHKNFSSSSALQIHMRTHTGDKPFRCTICQKAFTTKGNLKV 123
VC + F L++HM +HTG+ P++C+ C + F K +L+
Sbjct: 70 SVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQS 112
Score = 63.3 bits (155), Expect = 8e-14
Identities = 22/54 (40%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 80 CHVCHKNFSSSSALQIHMRTHTGDKPFRCTICQKAFTTKGNLKV--REIEINIG 131
C CHK F S L++H R HTG+KPF C C K + K NL +N
Sbjct: 10 CPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRS 63
Score = 35.9 bits (84), Expect = 0.001
Identities = 9/24 (37%), Positives = 11/24 (45%)
Query: 100 HTGDKPFRCTICQKAFTTKGNLKV 123
+G C C K F +K LKV
Sbjct: 2 SSGSSGVECPTCHKKFLSKYYLKV 25
Score = 33.6 bits (78), Expect = 0.007
Identities = 9/26 (34%), Positives = 12/26 (46%), Gaps = 1/26 (3%)
Query: 21 CHVCHKNFSSSSALQIHM-RTHTGDK 45
C C + F LQ HM + H+G
Sbjct: 97 CSSCSQQFMQKKDLQSHMIKLHSGPS 122
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex;
1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Length = 190
Score = 97.9 bits (245), Expect = 1e-26
Identities = 41/111 (36%), Positives = 58/111 (52%), Gaps = 23/111 (20%)
Query: 21 CHVCHKNFSSSSALQIHMRTHTGDKPFRCTICQKAFTTKGNLKLIPNAVFNVAGMPKHL- 79
C C K+FS L H RTHTG+KP++C C K+F+ + NL+ H
Sbjct: 52 CPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLR-------------AHQR 98
Query: 80 ---------CHVCHKNFSSSSALQIHMRTHTGDKPFRCTICQKAFTTKGNL 121
C C K+FS + L+ H RTHTG+KP++C C K+F+ + NL
Sbjct: 99 THTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNL 149
Score = 96.7 bits (242), Expect = 5e-26
Identities = 41/111 (36%), Positives = 57/111 (51%), Gaps = 23/111 (20%)
Query: 21 CHVCHKNFSSSSALQIHMRTHTGDKPFRCTICQKAFTTKGNLKLIPNAVFNVAGMPKHL- 79
C C K+FS S L H RTHTG+KP++C C K+F+ K +L +H
Sbjct: 24 CPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLT-------------RHQR 70
Query: 80 ---------CHVCHKNFSSSSALQIHMRTHTGDKPFRCTICQKAFTTKGNL 121
C C K+FS + L+ H RTHTG+KP+ C C K+F+ +L
Sbjct: 71 THTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHL 121
Score = 81.7 bits (203), Expect = 3e-20
Identities = 34/103 (33%), Positives = 47/103 (45%), Gaps = 31/103 (30%)
Query: 21 CHVCHKNFSSSSALQIHMRTHTGDKPFRCTICQKAFTTKGNLKLIPNAVFNVAGMPKHLC 80
C C K+FS + L+ H RTHTG+KP++C C K+
Sbjct: 108 CPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKS------------------------- 142
Query: 81 HVCHKNFSSSSALQIHMRTHTGDKPFRCTICQKAFTTKGNLKV 123
FS L H RTHTG+KP++C C K+F+ + L V
Sbjct: 143 ------FSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNV 179
Score = 75.2 bits (186), Expect = 7e-18
Identities = 26/94 (27%), Positives = 36/94 (38%), Gaps = 31/94 (32%)
Query: 28 FSSSSALQIHMRTHTGDKPFRCTICQKAFTTKGNLKLIPNAVFNVAGMPKHLCHVCHKNF 87
SS+ G+KP+ C C K+ F
Sbjct: 3 EFGSSSSVAQAALEPGEKPYACPECGKS-------------------------------F 31
Query: 88 SSSSALQIHMRTHTGDKPFRCTICQKAFTTKGNL 121
S S L H RTHTG+KP++C C K+F+ K +L
Sbjct: 32 SRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDL 65
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET:
DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Length = 119
Score = 93.0 bits (232), Expect = 2e-25
Identities = 32/100 (32%), Positives = 44/100 (44%), Gaps = 29/100 (29%)
Query: 24 CHKNFSSSSALQIHMRTHTGDKPFRCTICQKAFTTKGNLKLIPNAVFNVAGMPKHLCHVC 83
C+K + S LQ+H R HTG+KP++C C
Sbjct: 14 CNKRYFKLSHLQMHSRKHTGEKPYQCDFKD-----------------------------C 44
Query: 84 HKNFSSSSALQIHMRTHTGDKPFRCTICQKAFTTKGNLKV 123
+ FS S L+ H R HTG KPF+C CQ+ F+ +LK
Sbjct: 45 ERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKT 84
Score = 87.6 bits (218), Expect = 3e-23
Identities = 35/101 (34%), Positives = 41/101 (40%), Gaps = 33/101 (32%)
Query: 24 CHKNFSSSSALQIHMRTHTGDKPFRCTICQKAFTTKGNLKLIPNAVFNVAGMPKHLCHVC 83
C + FS S L+ H R HTG KPF+C CQ+ F
Sbjct: 44 CERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKF--------------------------- 76
Query: 84 HKNFSSSSALQIHMRTHTGDKPFRCTI--CQKAFTTKGNLK 122
S S L+ H RTHTG+KPF C CQK F L
Sbjct: 77 ----SRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELV 113
Score = 64.5 bits (158), Expect = 2e-14
Identities = 23/80 (28%), Positives = 27/80 (33%), Gaps = 29/80 (36%)
Query: 21 CHVCHKNFSSSSALQIHMRTHTGDKPFRCTICQKAFTTKGNLKLIPNAVFNVAGMPKHLC 80
C C + FS S L+ H RTHTG+KPF C
Sbjct: 69 CKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPS--------------------------- 101
Query: 81 HVCHKNFSSSSALQIHMRTH 100
C K F+ S L H H
Sbjct: 102 --CQKKFARSDELVRHHNMH 119
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding
protein, transcription/DNA complex; HET: DNA; 1.60A {Mus
musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A
1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A*
1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Length = 90
Score = 90.2 bits (225), Expect = 9e-25
Identities = 34/99 (34%), Positives = 42/99 (42%), Gaps = 31/99 (31%)
Query: 24 CHKNFSSSSALQIHMRTHTGDKPFRCTICQKAFTTKGNLKLIPNAVFNVAGMPKHLCHVC 83
C + FS S +L H+R HTG KPF+C IC +
Sbjct: 12 CDRRFSQSGSLTRHIRIHTGQKPFQCRICMRN---------------------------- 43
Query: 84 HKNFSSSSALQIHMRTHTGDKPFRCTICQKAFTTKGNLK 122
FS S L H+RTHTG+KPF C IC + F K
Sbjct: 44 ---FSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERK 79
Score = 71.0 bits (175), Expect = 3e-17
Identities = 24/84 (28%), Positives = 32/84 (38%), Gaps = 31/84 (36%)
Query: 21 CHVCHKNFSSSSALQIHMRTHTGDKPFRCTICQKAFTTKGNLKLIPNAVFNVAGMPKHLC 80
C +C +NFS S L H+RTHTG+KPF C IC +
Sbjct: 37 CRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK------------------------- 71
Query: 81 HVCHKNFSSSSALQIHMRTHTGDK 104
F+ S + H + H K
Sbjct: 72 ------FARSDERKRHTKIHLRQK 89
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation,
initiator element, zinc finger protein, DNA- protein
recognition; HET: DNA; 2.50A {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Length = 124
Score = 89.1 bits (222), Expect = 7e-24
Identities = 36/106 (33%), Positives = 44/106 (41%), Gaps = 31/106 (29%)
Query: 19 HLCHVCHKNFSSSSALQIHMRTHTGDKPFRCTICQKAFTTKGNLKLIPNAVFNVAGMPKH 78
H+C C K F SS L+ H HTG+KPF+CT
Sbjct: 35 HVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEG------------------------- 69
Query: 79 LCHVCHKNFSSSSALQIHMRTHTGDKPFRCTI--CQKAFTTKGNLK 122
C K FS L+ H+R HTGD+P+ C C K F NLK
Sbjct: 70 ----CGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLK 111
Score = 77.9 bits (193), Expect = 1e-19
Identities = 31/105 (29%), Positives = 41/105 (39%), Gaps = 34/105 (32%)
Query: 21 CHVCHKNFSSSSALQIHMRTHTGDKPFRCTICQKAFTTKGNLKLIPNAVFNVAGMPKHLC 80
C K F +SA++ H+ TH G + C C KAF
Sbjct: 10 HKGCTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAF------------------------ 44
Query: 81 HVCHKNFSSSSALQIHMRTHTGDKPFRCTI--CQKAFTTKGNLKV 123
SS L+ H HTG+KPF+CT C K F+ NL+
Sbjct: 45 -------VESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRT 82
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND,
transcription factor, kruppel-like factor, GC-box
promoter elements, structural genomics; NMR {Homo
sapiens}
Length = 100
Score = 88.1 bits (219), Expect = 8e-24
Identities = 33/107 (30%), Positives = 47/107 (43%), Gaps = 31/107 (28%)
Query: 18 KHLCHV--CHKNFSSSSALQIHMRTHTGDKPFRCTICQKAFTTKGNLKLIPNAVFNVAGM 75
H C C K ++ SS L+ H+RTHTG+KP++CT
Sbjct: 15 IHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTW------------------------ 50
Query: 76 PKHLCHVCHKNFSSSSALQIHMRTHTGDKPFRCTICQKAFTTKGNLK 122
C F+ S L H R HTG KPF+C +C ++F+ +L
Sbjct: 51 -----EGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLA 92
Score = 59.6 bits (145), Expect = 1e-12
Identities = 17/41 (41%), Positives = 24/41 (58%)
Query: 24 CHKNFSSSSALQIHMRTHTGDKPFRCTICQKAFTTKGNLKL 64
C F+ S L H R HTG KPF+C +C ++F+ +L L
Sbjct: 53 CDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLAL 93
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the
cerebellum 3, disease mutation, DNA-binding,
metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Length = 155
Score = 89.7 bits (223), Expect = 1e-23
Identities = 32/105 (30%), Positives = 42/105 (40%), Gaps = 31/105 (29%)
Query: 21 CHVCHKNFSSSSALQIHMRTHTGDKPFRCTICQKAFTTKGNLKLIPNAVFNVAGMPKHLC 80
C K+F + L H+R HTG+KPF C
Sbjct: 65 CPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPG--------------------------- 97
Query: 81 HVCHKNFSSSSALQIHMRTHTGDKPFRCTI--CQKAFTTKGNLKV 123
C K F+ S L+IH RTHTG+KPF+C C + F + K
Sbjct: 98 --CGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKK 140
Score = 87.3 bits (217), Expect = 7e-23
Identities = 25/110 (22%), Positives = 35/110 (31%), Gaps = 12/110 (10%)
Query: 24 CHKNFSSSSALQIHMRTHTGDKPFRCTICQKAFTTKGNLKL--------IPNAVFNVAGM 75
+ C + F+T L P +V
Sbjct: 3 SGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYW 62
Query: 76 PKHLCHVCHKNFSSSSALQIHMRTHTGDKPFRCTI--CQKAFTTKGNLKV 123
+ C K+F + L H+R HTG+KPF C C K F NLK+
Sbjct: 63 EE--CPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKI 110
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA
complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 155
Score = 89.2 bits (222), Expect = 2e-23
Identities = 29/104 (27%), Positives = 43/104 (41%), Gaps = 31/104 (29%)
Query: 21 CHVCHKNFSSSSALQIHMRTHTGDKPFRCTICQKAFTTKGNLKLIPNAVFNVAGMPKHLC 80
C + F + L +HMR HTG+KP +CT
Sbjct: 42 CSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEG--------------------------- 74
Query: 81 HVCHKNFSSSSALQIHMRTHTGDKPFRCT--ICQKAFTTKGNLK 122
C K++S L+ H+R+HTG+KP+ C C KAF+ +
Sbjct: 75 --CRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRA 116
Score = 84.6 bits (210), Expect = 1e-21
Identities = 27/108 (25%), Positives = 38/108 (35%), Gaps = 31/108 (28%)
Query: 21 CHVCHKNFSSSSALQIHM---RTHTGDKPFRCTICQKAFTTKGNLKLIPNAVFNVAGMPK 77
C + F S L H+ H K F C
Sbjct: 6 WDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGG------------------------ 41
Query: 78 HLCHVCHKNFSSSSALQIHMRTHTGDKPFRCTI--CQKAFTTKGNLKV 123
C + F + L +HMR HTG+KP +CT C+K+++ NLK
Sbjct: 42 --CSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKT 87
Score = 62.2 bits (152), Expect = 4e-13
Identities = 19/80 (23%), Positives = 31/80 (38%), Gaps = 30/80 (37%)
Query: 24 CHKNFSSSSALQIHM-RTHTGDKPFRCTICQKAFTTKGNLKLIPNAVFNVAGMPKHLCHV 82
C K FS++S H RTH+ +KP+ C +
Sbjct: 105 CSKAFSNASDRAKHQNRTHSNEKPYVCKLPG----------------------------- 135
Query: 83 CHKNFSSSSALQIHMRTHTG 102
C K ++ S+L+ H++T G
Sbjct: 136 CTKRYTDPSSLRKHVKTVHG 155
>1tf6_A Protein (transcription factor IIIA); complex (transcription
regulation/DNA), RNA polymerase III, transcription
initiation, zinc finger protein; HET: DNA; 3.10A
{Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Length = 190
Score = 89.2 bits (222), Expect = 3e-23
Identities = 36/116 (31%), Positives = 48/116 (41%), Gaps = 27/116 (23%)
Query: 24 CHKNFSSSSALQIHMRTHTGDKPFRCT--ICQKAFTTKGNL----------KLIPNAVFN 71
C K F+S L H THTG+K F C C FTTK N+ K+
Sbjct: 50 CEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICV----- 104
Query: 72 VAGMPKHLCHV--CHKNFSSSSALQIHMRTHTGDKPFRCT--ICQKAFTTKGNLKV 123
++CH C K F + L++H +HT P+ C C K F+ LK
Sbjct: 105 ------YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKR 154
Score = 78.8 bits (195), Expect = 4e-19
Identities = 31/102 (30%), Positives = 39/102 (38%), Gaps = 31/102 (30%)
Query: 24 CHKNFSSSSALQIHMRTHTGDKPFRCTICQKAFTTKGNLKLIPNAVFNVAGMPKHLCHVC 83
C ++ + LQ H+ HTG+KPF C C
Sbjct: 20 CGAAYNKNWKLQAHLCKHTGEKPFPCKEEG-----------------------------C 50
Query: 84 HKNFSSSSALQIHMRTHTGDKPFRCT--ICQKAFTTKGNLKV 123
K F+S L H THTG+K F C C FTTK N+K
Sbjct: 51 EKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKK 92
Score = 70.7 bits (174), Expect = 4e-16
Identities = 20/98 (20%), Positives = 28/98 (28%), Gaps = 29/98 (29%)
Query: 24 CHKNFSSSSALQIHMRTHTGDKPFRCTICQKAFTTKGNLKLIPNAVFNVAGMPKHLCHVC 83
C K F + L++H +HT P+ C C
Sbjct: 112 CGKAFKKHNQLKVHQFSHTQQLPYECPHEG-----------------------------C 142
Query: 84 HKNFSSSSALQIHMRTHTGDKPFRCTICQKAFTTKGNL 121
K FS S L+ H + H G + C T
Sbjct: 143 DKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLY 180
Score = 64.9 bits (159), Expect = 6e-14
Identities = 18/89 (20%), Positives = 28/89 (31%), Gaps = 31/89 (34%)
Query: 37 HMRTHTGDKPFRCTICQKAFTTKGNLKLIPNAVFNVAGMPKHLCHVCHKNFSSSSALQIH 96
K + C+ C ++ + LQ H
Sbjct: 3 EKALPVVYKRYICSFAD-----------------------------CGAAYNKNWKLQAH 33
Query: 97 MRTHTGDKPFRCT--ICQKAFTTKGNLKV 123
+ HTG+KPF C C+K FT+ +L
Sbjct: 34 LCKHTGEKPFPCKEEGCEKGFTSLHHLTR 62
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine
zipper, X-RAY crystallography, structure-based design,
zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1
g.37.1.1 PDB: 1xf7_A
Length = 88
Score = 86.4 bits (215), Expect = 3e-23
Identities = 24/102 (23%), Positives = 36/102 (35%), Gaps = 32/102 (31%)
Query: 21 CHVCHKNFSSSSALQIHMRTHTGDKPFRCTICQKAFTTKGNLKLIPNAVFNVAGMPKHLC 80
C +C +NFS S L H+RTHTG+KPF C IC +
Sbjct: 6 CRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK------------------------- 40
Query: 81 HVCHKNFSSSSALQIHMRTHTGDKPFRCTICQKAFTTKGNLK 122
F+ S + H P ++ + +L+
Sbjct: 41 ------FARSDERKRHRDIQHI-LPILEDKVEELLSKNYHLE 75
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein,
DNA- binding, transcription, C2H2-type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1
Length = 96
Score = 85.9 bits (214), Expect = 5e-23
Identities = 32/103 (31%), Positives = 42/103 (40%), Gaps = 31/103 (30%)
Query: 21 CHVCHKNFSSSSALQIHMRTHTGDKPFRCTICQKAFTTKGNLKLIPNAVFNVAGMPKHLC 80
C VC K FS L+ HMR HTG KP++C C A
Sbjct: 11 CEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYA------------------------- 45
Query: 81 HVCHKNFSSSSALQIHMRTHTGDKPFRCTICQKAFTTKGNLKV 123
+ SS+L H+R H+ ++PF+C IC A L V
Sbjct: 46 ------AADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTV 82
Score = 74.4 bits (184), Expect = 2e-18
Identities = 23/88 (26%), Positives = 34/88 (38%), Gaps = 31/88 (35%)
Query: 21 CHVCHKNFSSSSALQIHMRTHTGDKPFRCTICQKAFTTKGNLKLIPNAVFNVAGMPKHLC 80
C C + SS+L H+R H+ ++PF+C IC A
Sbjct: 39 CKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYA------------------------- 73
Query: 81 HVCHKNFSSSSALQIHMRTHTGDKPFRC 108
+SS L +H+R+HTGD
Sbjct: 74 ------SRNSSQLTVHLRSHTGDSGPSS 95
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding,
transcription, metal-binding, DNA, protein, nucleus,
activator; 1.70A {Mus musculus} PDB: 2wbu_A
Length = 89
Score = 84.9 bits (211), Expect = 1e-22
Identities = 32/107 (29%), Positives = 44/107 (41%), Gaps = 31/107 (28%)
Query: 18 KHLCHV--CHKNFSSSSALQIHMRTHTGDKPFRCTICQKAFTTKGNLKLIPNAVFNVAGM 75
H C C K ++ SS L+ H+RTHTG+KP+ C
Sbjct: 5 THTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDG---------------------- 42
Query: 76 PKHLCHVCHKNFSSSSALQIHMRTHTGDKPFRCTICQKAFTTKGNLK 122
C F+ S L H R HTG +PF+C C +AF+ +L
Sbjct: 43 -------CGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLA 82
Score = 57.5 bits (140), Expect = 5e-12
Identities = 17/41 (41%), Positives = 23/41 (56%)
Query: 24 CHKNFSSSSALQIHMRTHTGDKPFRCTICQKAFTTKGNLKL 64
C F+ S L H R HTG +PF+C C +AF+ +L L
Sbjct: 43 CGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLAL 83
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Mus musculus} SCOP:
k.12.1.1
Length = 106
Score = 80.2 bits (199), Expect = 1e-20
Identities = 30/103 (29%), Positives = 40/103 (38%), Gaps = 31/103 (30%)
Query: 21 CHVCHKNFSSSSALQIHMRTHTGDKPFRCTICQKAFTTKGNLKLIPNAVFNVAGMPKHLC 80
C C ++F+ S L IH RTHT ++P+ C IC KAF
Sbjct: 20 CKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAF------------------------ 55
Query: 81 HVCHKNFSSSSALQIHMRTHTGDKPFRCTICQKAFTTKGNLKV 123
L+ H H+ +KPF+C C K F L V
Sbjct: 56 -------RRQDHLRDHRYIHSKEKPFKCQECGKGFCQSRTLAV 91
Score = 70.5 bits (174), Expect = 7e-17
Identities = 19/89 (21%), Positives = 25/89 (28%), Gaps = 31/89 (34%)
Query: 21 CHVCHKNFSSSSALQIHMRTHTGDKPFRCTICQKAFTTKGNLKLIPNAVFNVAGMPKHLC 80
C +CHK F L+ H H+ +KPF+C C K
Sbjct: 48 CDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKG------------------------- 82
Query: 81 HVCHKNFSSSSALQIHMRTHTGDKPFRCT 109
F S L +H H
Sbjct: 83 ------FCQSRTLAVHKTLHMQTSSPTAA 105
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1
Length = 95
Score = 79.8 bits (198), Expect = 1e-20
Identities = 24/103 (23%), Positives = 36/103 (34%), Gaps = 33/103 (32%)
Query: 21 CHVCHKNFSSSSALQIHMRTHTGDKPFRCTICQKAFTTKGNLKLIPNAVFNVAGMPKHLC 80
C +C K F L H +H+G+KP+ C +C F
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRF------------------------ 45
Query: 81 HVCHKNFSSSSALQIHMRTHTG--DKPFRCTICQKAFTTKGNL 121
+ H+R+H G KP+ C C K F+ +L
Sbjct: 46 -------KRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHL 81
Score = 60.2 bits (147), Expect = 6e-13
Identities = 16/81 (19%), Positives = 23/81 (28%), Gaps = 31/81 (38%)
Query: 41 HTGDKPFRCTICQKAFTTKGNLKLIPNAVFNVAGMPKHLCHVCHKNFSSSSALQIHMRTH 100
+G C IC K F L H +H
Sbjct: 2 SSGSSGVACEICGKIF-------------------------------RDVYHLNRHKLSH 30
Query: 101 TGDKPFRCTICQKAFTTKGNL 121
+G+KP+ C +C F K +
Sbjct: 31 SGEKPYSCPVCGLRFKRKDRM 51
Score = 56.3 bits (137), Expect = 2e-11
Identities = 19/87 (21%), Positives = 26/87 (29%), Gaps = 34/87 (39%)
Query: 21 CHVCHKNFSSSSALQIHMRTHTG--DKPFRCTICQKAFTTKGNLKLIPNAVFNVAGMPKH 78
C VC F + H+R+H G KP+ C C K
Sbjct: 38 CPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKG----------------------- 74
Query: 79 LCHVCHKNFSSSSALQIHM-RTHTGDK 104
FS L H+ + H+G
Sbjct: 75 --------FSRPDHLNGHIKQVHSGPS 93
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 86
Score = 78.7 bits (195), Expect = 3e-20
Identities = 20/83 (24%), Positives = 31/83 (37%), Gaps = 1/83 (1%)
Query: 34 LQIHMRTHTGDKPFRCTICQKAFTTKGNLKLIPNAVFNVAGMPK-HLCHVCHKNFSSSSA 92
RTHTG+KP+ C+ C K F K L + + +P +C C K F+ +
Sbjct: 3 SGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNT 62
Query: 93 LQIHMRTHTGDKPFRCTICQKAF 115
+ H G +
Sbjct: 63 MARHADNCAGPDGVEGENSGPSS 85
Score = 52.5 bits (127), Expect = 4e-10
Identities = 6/36 (16%), Positives = 10/36 (27%)
Query: 21 CHVCHKNFSSSSALQIHMRTHTGDKPFRCTICQKAF 56
C C K F+ + + H G +
Sbjct: 50 CSKCGKTFTRRNTMARHADNCAGPDGVEGENSGPSS 85
Score = 46.4 bits (111), Expect = 9e-08
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 93 LQIHMRTHTGDKPFRCTICQKAFTTKGNLKV 123
RTHTG+KP+ C+ C K F K L +
Sbjct: 3 SGSSGRTHTGEKPYACSHCDKTFRQKQLLDM 33
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB
domain containing protein 22B, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 110
Score = 79.0 bits (196), Expect = 4e-20
Identities = 26/98 (26%), Positives = 35/98 (35%), Gaps = 31/98 (31%)
Query: 24 CHKNFSSSSALQIHMRTHTGDKPFRCTICQKAFTTKGNLKLIPNAVFNVAGMPKHLCHVC 83
C K+F+ S HM H G +P+ C +C K F
Sbjct: 15 CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKF--------------------------- 47
Query: 84 HKNFSSSSALQIHMRTHTGDKPFRCTICQKAFTTKGNL 121
L HM+ HTG KP+ C IC K F + +
Sbjct: 48 ----KMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSF 81
Score = 76.7 bits (190), Expect = 4e-19
Identities = 21/101 (20%), Positives = 29/101 (28%), Gaps = 33/101 (32%)
Query: 21 CHVCHKNFSSSSALQIHMRTHTGDKPFRCTICQKAFTTKGNLKLIPNAVFNVAGMPKHLC 80
C VC K F L HM+ HTG KP+ C IC K F + +
Sbjct: 40 CGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSF------------------ 81
Query: 81 HVCHKNFSSSSALQIHMRTHTGDKPFRCTICQKAFTTKGNL 121
H + K + ++ T
Sbjct: 82 ---------------HRHVTSCTKSYEAAKAEQNTTEASGP 107
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 77
Score = 77.6 bits (192), Expect = 6e-20
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
Query: 34 LQIHMRTHTGDKPFRCTICQKAFTTKGNLKLIPNAVFNVAGMPKHLCHVCHKNFSSSSAL 93
RTH+G+KP+ C IC FT G +K + + + K C C + S L
Sbjct: 3 SGSSGRTHSGEKPYECYICHARFTQSGTMK-MHILQKHTENVAKFHCPHCDTVIARKSDL 61
Query: 94 QIHMRT-HTGDKPF 106
+H+R H+ P
Sbjct: 62 GVHLRKQHSYSGPS 75
Score = 55.2 bits (134), Expect = 2e-11
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 93 LQIHMRTHTGDKPFRCTICQKAFTTKGNLKV 123
RTH+G+KP+ C IC FT G +K+
Sbjct: 3 SGSSGRTHSGEKPYECYICHARFTQSGTMKM 33
Score = 39.4 bits (93), Expect = 3e-05
Identities = 9/32 (28%), Positives = 13/32 (40%), Gaps = 1/32 (3%)
Query: 17 PKHLCHVCHKNFSSSSALQIHMRT-HTGDKPF 47
K C C + S L +H+R H+ P
Sbjct: 44 AKFHCPHCDTVIARKSDLGVHLRKQHSYSGPS 75
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 79
Score = 77.2 bits (191), Expect = 8e-20
Identities = 17/93 (18%), Positives = 28/93 (30%), Gaps = 30/93 (32%)
Query: 24 CHKNFSSSSALQIHMR-THTGDKPFRCTICQKAFTTKGNLKLIPNAVFNVAGMPKHLCHV 82
C + FS+ L H + H K F C
Sbjct: 15 CGRIFSNRQYLNHHKKYQHIHQKSFSCPEPA----------------------------- 45
Query: 83 CHKNFSSSSALQIHMRTHTGDKPFRCTICQKAF 115
C K+F+ L+ HM+ H+ + + C +
Sbjct: 46 CGKSFNFKKHLKEHMKLHSDTRDYICEFSGPSS 78
Score = 57.2 bits (139), Expect = 6e-12
Identities = 17/85 (20%), Positives = 23/85 (27%), Gaps = 32/85 (37%)
Query: 41 HTGDKPFRCTICQKAFTTKGNLKLIPNAVFNVAGMPKHLCHVCHKNFSSSSALQIHMR-T 99
+G C C + FS+ L H +
Sbjct: 2 SSGSSGMPCDFPG-----------------------------CGRIFSNRQYLNHHKKYQ 32
Query: 100 HTGDKPFRCT--ICQKAFTTKGNLK 122
H K F C C K+F K +LK
Sbjct: 33 HIHQKSFSCPEPACGKSFNFKKHLK 57
Score = 33.3 bits (77), Expect = 0.005
Identities = 5/26 (19%), Positives = 9/26 (34%), Gaps = 2/26 (7%)
Query: 100 HTGDKPFRCTI--CQKAFTTKGNLKV 123
+G C C + F+ + L
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNH 27
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain,
protein-DNA complex, DNA-B metal-binding, nucleus; HET:
DNA; NMR {Rattus norvegicus}
Length = 82
Score = 77.5 bits (192), Expect = 9e-20
Identities = 28/101 (27%), Positives = 40/101 (39%), Gaps = 31/101 (30%)
Query: 21 CHVCHKNFSSSSALQIHMRTHTGDKPFRCTICQKAFTTKGNLKLIPNAVFNVAGMPKHLC 80
C +C K+F SS L H+ H+ +P+ C C K
Sbjct: 4 CKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKR------------------------- 38
Query: 81 HVCHKNFSSSSALQIHMRTHTGDKPFRCTICQKAFTTKGNL 121
F S ++ H HTG+KP +C +C KAF+ NL
Sbjct: 39 ------FHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNL 73
Score = 58.6 bits (143), Expect = 2e-12
Identities = 25/82 (30%), Positives = 30/82 (36%), Gaps = 31/82 (37%)
Query: 21 CHVCHKNFSSSSALQIHMRTHTGDKPFRCTICQKAFTTKGNLKLIPNAVFNVAGMPKHLC 80
C C K F S ++ H HTG+KP +C +C KA
Sbjct: 32 CQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKA------------------------- 66
Query: 81 HVCHKNFSSSSALQIHMRTHTG 102
FS SS L H R HTG
Sbjct: 67 ------FSQSSNLITHSRKHTG 82
>2j7j_A Transcription factor IIIA; zinc finger module, alternative
initiation, nuclear protein, phosphorylation,
hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus
laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B
2hgh_A
Length = 85
Score = 74.2 bits (183), Expect = 2e-18
Identities = 20/99 (20%), Positives = 28/99 (28%), Gaps = 29/99 (29%)
Query: 24 CHKNFSSSSALQIHMRTHTGDKPFRCTICQKAFTTKGNLKLIPNAVFNVAGMPKHLCHVC 83
C K F + L++H +HT P+ C C
Sbjct: 9 CGKAFKKHNQLKVHQFSHTQQLPYECPHEG-----------------------------C 39
Query: 84 HKNFSSSSALQIHMRTHTGDKPFRCTICQKAFTTKGNLK 122
K FS S L+ H + H G + C T
Sbjct: 40 DKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYL 78
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative; NMR {Homo sapiens}
Length = 74
Score = 72.9 bits (180), Expect = 4e-18
Identities = 23/93 (24%), Positives = 28/93 (30%), Gaps = 31/93 (33%)
Query: 31 SSALQIHMRTHTGDKPFRCTICQKAFTTKGNLKLIPNAVFNVAGMPKHLCHVCHKNFSSS 90
H DKP++C CQ +F
Sbjct: 2 GHHHHHHSHMTHSDKPYKCDRCQASF-------------------------------RYK 30
Query: 91 SALQIHMRTHTGDKPFRCTICQKAFTTKGNLKV 123
L H HTG+KP+RC IC F NLK
Sbjct: 31 GNLASHKTVHTGEKPYRCNICGAQFNRPANLKT 63
Score = 65.2 bits (160), Expect = 4e-15
Identities = 22/86 (25%), Positives = 31/86 (36%), Gaps = 31/86 (36%)
Query: 21 CHVCHKNFSSSSALQIHMRTHTGDKPFRCTICQKAFTTKGNLKLIPNAVFNVAGMPKHLC 80
C C +F L H HTG+KP+RC IC
Sbjct: 20 CDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQ------------------------- 54
Query: 81 HVCHKNFSSSSALQIHMRTHTGDKPF 106
F+ + L+ H R H+G+KP+
Sbjct: 55 ------FNRPANLKTHTRIHSGEKPY 74
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA
binding, transcription, C2H2 type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 70
Score = 67.9 bits (167), Expect = 3e-16
Identities = 21/89 (23%), Positives = 28/89 (31%), Gaps = 31/89 (34%)
Query: 21 CHVCHKNFSSSSALQIHMRTHTGDKPFRCTICQKAFTTKGNLKLIPNAVFNVAGMPKHLC 80
C C + SS +AL+IH R H D+PF+C C NL
Sbjct: 12 CSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLS----------------- 54
Query: 81 HVCHKNFSSSSALQIHMRTHTGDKPFRCT 109
HM+ GD +
Sbjct: 55 --------------KHMKKFHGDMSGPSS 69
Score = 66.4 bits (163), Expect = 1e-15
Identities = 17/84 (20%), Positives = 28/84 (33%), Gaps = 31/84 (36%)
Query: 39 RTHTGDKPFRCTICQKAFTTKGNLKLIPNAVFNVAGMPKHLCHVCHKNFSSSSALQIHMR 98
+ + P +C+ C + ++K +AL+IH R
Sbjct: 2 SSGSSGHPEKCSECSYSCSSK-------------------------------AALRIHER 30
Query: 99 THTGDKPFRCTICQKAFTTKGNLK 122
H D+PF+C C NL
Sbjct: 31 IHCTDRPFKCNYCSFDTKQPSNLS 54
Score = 38.6 bits (91), Expect = 4e-05
Identities = 5/26 (19%), Positives = 14/26 (53%)
Query: 98 RTHTGDKPFRCTICQKAFTTKGNLKV 123
+ + P +C+ C + ++K L++
Sbjct: 2 SSGSSGHPEKCSECSYSCSSKAALRI 27
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN
domain containing protein 16, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 66.3 bits (163), Expect = 1e-15
Identities = 24/92 (26%), Positives = 34/92 (36%), Gaps = 31/92 (33%)
Query: 30 SSSALQIHMRTHTGDKPFRCTICQKAFTTKGNLKLIPNAVFNVAGMPKHLCHVCHKNFSS 89
SS + + ++C C K+F S
Sbjct: 2 SSGSSGRSEWQQRERRRYKCDECGKSF-------------------------------SH 30
Query: 90 SSALQIHMRTHTGDKPFRCTICQKAFTTKGNL 121
SS L H RTHTG+KP++C C KAF + +L
Sbjct: 31 SSDLSKHRRTHTGEKPYKCDECGKAFIQRSHL 62
Score = 60.9 bits (149), Expect = 2e-13
Identities = 29/86 (33%), Positives = 33/86 (38%), Gaps = 31/86 (36%)
Query: 21 CHVCHKNFSSSSALQIHMRTHTGDKPFRCTICQKAFTTKGNLKLIPNAVFNVAGMPKHLC 80
C C K+FS SS L H RTHTG+KP++C C KAF
Sbjct: 21 CDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAF------------------------ 56
Query: 81 HVCHKNFSSSSALQIHMRTHTGDKPF 106
S L H R HTG P
Sbjct: 57 -------IQRSHLIGHHRVHTGSGPS 75
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double
helix, transcription/DNA complex; HET: DNA; 2.80A
{Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Length = 66
Score = 65.7 bits (161), Expect = 2e-15
Identities = 16/86 (18%), Positives = 24/86 (27%), Gaps = 33/86 (38%)
Query: 39 RTHTGDKPFRCTICQKAFTTKGNLKLIPNAVFNVAGMPKHLCHVCHKNFSSSSALQIHMR 98
T G+ +RC +C + ++ S H
Sbjct: 3 FTKEGEHTYRCKVCSRV-------------------------------YTHISNFCRHYV 31
Query: 99 T--HTGDKPFRCTICQKAFTTKGNLK 122
T K + C C K FT K N+
Sbjct: 32 TSHKRNVKVYPCPFCFKEFTRKDNMT 57
Score = 60.3 bits (147), Expect = 2e-13
Identities = 14/45 (31%), Positives = 19/45 (42%), Gaps = 2/45 (4%)
Query: 21 CHVCHKNFSSSSALQIHMRT--HTGDKPFRCTICQKAFTTKGNLK 63
C VC + ++ S H T K + C C K FT K N+
Sbjct: 13 CKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMT 57
Score = 35.6 bits (83), Expect = 5e-04
Identities = 5/23 (21%), Positives = 9/23 (39%)
Query: 21 CHVCHKNFSSSSALQIHMRTHTG 43
C C K F+ + H++
Sbjct: 43 CPFCFKEFTRKDNMTAHVKIIHK 65
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 115
Score = 64.8 bits (157), Expect = 2e-14
Identities = 23/101 (22%), Positives = 35/101 (34%), Gaps = 10/101 (9%)
Query: 29 SSSSALQIHMRTHTGDKPFRCTICQKAFTTKGNLKLIPNAVFNVAGMPKHLCHVCHKNFS 88
SS S+ +++ TG FRC C A+ T L + N G + H N
Sbjct: 2 SSGSSGKLYGSIFTGASKFRCKDCSAAYDTLVELTV----HMNETGHYRDDNHETDNNNP 57
Query: 89 SSS------ALQIHMRTHTGDKPFRCTICQKAFTTKGNLKV 123
+L K +C C +F + +L V
Sbjct: 58 KRWSKPRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSV 98
Score = 34.0 bits (77), Expect = 0.005
Identities = 6/43 (13%), Positives = 13/43 (30%)
Query: 21 CHVCHKNFSSSSALQIHMRTHTGDKPFRCTICQKAFTTKGNLK 63
+ + +L K +C C +F + +L
Sbjct: 55 NNPKRWSKPRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLS 97
Score = 26.7 bits (58), Expect = 1.9
Identities = 8/30 (26%), Positives = 10/30 (33%), Gaps = 2/30 (6%)
Query: 21 CHVCHKNFSSSSALQIHM--RTHTGDKPFR 48
C C +F S L +HM H
Sbjct: 83 CMYCGHSFESLQDLSVHMIKTKHYQKVSGP 112
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 78
Score = 62.4 bits (152), Expect = 5e-14
Identities = 14/86 (16%), Positives = 19/86 (22%), Gaps = 34/86 (39%)
Query: 41 HTGDKPFRCTICQKAFTTKGNLKLIPNAVFNVAGMPKHLCHVCHKNFSSSSALQIHMRTH 100
+G +C IC K +L H R H
Sbjct: 2 SSGSSGLQCEICGFTCRQKASLN-------------------------------WHQRKH 30
Query: 101 T---GDKPFRCTICQKAFTTKGNLKV 123
F C C K F ++
Sbjct: 31 AETVAALRFPCEFCGKRFEKPDSVAA 56
Score = 61.3 bits (149), Expect = 2e-13
Identities = 11/48 (22%), Positives = 16/48 (33%), Gaps = 3/48 (6%)
Query: 19 HLCHVCHKNFSSSSALQIHMRTHT---GDKPFRCTICQKAFTTKGNLK 63
C +C ++L H R H F C C K F ++
Sbjct: 8 LQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVA 55
Score = 32.8 bits (75), Expect = 0.007
Identities = 5/29 (17%), Positives = 7/29 (24%)
Query: 21 CHVCHKNFSSSSALQIHMRTHTGDKPFRC 49
C C K F ++ H
Sbjct: 41 CEFCGKRFEKPDSVAAHRSKSHPALLLAP 69
>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 95
Score = 63.1 bits (153), Expect = 5e-14
Identities = 18/96 (18%), Positives = 27/96 (28%), Gaps = 24/96 (25%)
Query: 15 GMPKHLCHVCHKNFSSSSALQIHM-RTHTGDKPFRCTICQKAFTTKGNLKLIPNAVFNVA 73
C + FS+ L H+ H G +C
Sbjct: 22 AQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWE------------------ 63
Query: 74 GMPKHLCHVCHKNFSSSSALQIHMRTHTGDKPFRCT 109
C K+F + L H+R HTG+K +
Sbjct: 64 -----ECPREGKSFKAKYKLVNHIRVHTGEKSGPSS 94
Score = 35.3 bits (81), Expect = 0.001
Identities = 12/59 (20%), Positives = 16/59 (27%), Gaps = 9/59 (15%)
Query: 74 GMPKHLCHVCHKNFSSSSALQIHM-RTHTGDKPFR--------CTICQKAFTTKGNLKV 123
C + FS+ L H+ H G C K+F K L
Sbjct: 22 AQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVN 80
Score = 27.2 bits (60), Expect = 1.1
Identities = 14/59 (23%), Positives = 19/59 (32%), Gaps = 2/59 (3%)
Query: 99 THTGDKPFRCTICQKAFTTKGNLK--VREIEINIGSQLPKKAQQHIGAVEGKSFQAKHK 155
C + F+T L V + Q EGKSF+AK+K
Sbjct: 19 IDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYK 77
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc
finger, dimer, protein-DNA complex, cooperativity,
transcription/DNA complex; 2.35A {Mus musculus} SCOP:
g.37.1.1 g.37.1.1
Length = 73
Score = 61.2 bits (149), Expect = 1e-13
Identities = 21/95 (22%), Positives = 33/95 (34%), Gaps = 31/95 (32%)
Query: 28 FSSSSALQIHMRTHTGDKPFRCTICQKAFTTKGNLKLIPNAVFNVAGMPKHLCHVCHKNF 87
+ L ++ +P+ C + C + F
Sbjct: 3 PHPMNNLLNYVVPKM--RPYACPV-----------------------------ESCDRRF 31
Query: 88 SSSSALQIHMRTHTGDKPFRCTICQKAFTTKGNLK 122
S S L H+R HTG KPF+C IC + F+ +L
Sbjct: 32 SRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLT 66
Score = 56.2 bits (136), Expect = 1e-11
Identities = 18/41 (43%), Positives = 24/41 (58%)
Query: 24 CHKNFSSSSALQIHMRTHTGDKPFRCTICQKAFTTKGNLKL 64
C + FS S L H+R HTG KPF+C IC + F+ +L
Sbjct: 27 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTT 67
Score = 34.6 bits (80), Expect = 0.001
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 18 KHLCHVCHKNFSSSSALQIHMRTHT 42
C +C +NFS S L H+RTHT
Sbjct: 49 PFQCRICMRNFSRSDHLTTHIRTHT 73
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 72
Score = 60.2 bits (147), Expect = 3e-13
Identities = 26/88 (29%), Positives = 33/88 (37%), Gaps = 31/88 (35%)
Query: 34 LQIHMRTHTGDKPFRCTICQKAFTTKGNLKLIPNAVFNVAGMPKHLCHVCHKNFSSSSAL 93
H+G+KP+ C C KAF S SS L
Sbjct: 2 SSGSSGIHSGEKPYGCVECGKAF-------------------------------SRSSIL 30
Query: 94 QIHMRTHTGDKPFRCTICQKAFTTKGNL 121
H R HTG+KP++C C KAF+ L
Sbjct: 31 VQHQRVHTGEKPYKCLECGKAFSQNSGL 58
Score = 59.8 bits (146), Expect = 5e-13
Identities = 27/86 (31%), Positives = 31/86 (36%), Gaps = 31/86 (36%)
Query: 21 CHVCHKNFSSSSALQIHMRTHTGDKPFRCTICQKAFTTKGNLKLIPNAVFNVAGMPKHLC 80
C C K FS SS L H R HTG+KP++C C KAF
Sbjct: 17 CVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAF------------------------ 52
Query: 81 HVCHKNFSSSSALQIHMRTHTGDKPF 106
S +S L H R HT
Sbjct: 53 -------SQNSGLINHQRIHTSGPSS 71
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces
cerevisiae} SCOP: g.37.1.1 g.37.1.1
Length = 60
Score = 58.3 bits (142), Expect = 1e-12
Identities = 17/44 (38%), Positives = 27/44 (61%)
Query: 19 HLCHVCHKNFSSSSALQIHMRTHTGDKPFRCTICQKAFTTKGNL 62
+C VC + F+ L+ H R+HT +KP+ C +C +AFT + L
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLL 46
Score = 58.3 bits (142), Expect = 1e-12
Identities = 17/44 (38%), Positives = 27/44 (61%)
Query: 78 HLCHVCHKNFSSSSALQIHMRTHTGDKPFRCTICQKAFTTKGNL 121
+C VC + F+ L+ H R+HT +KP+ C +C +AFT + L
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLL 46
Score = 31.7 bits (73), Expect = 0.012
Identities = 7/26 (26%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Query: 21 CHVCHKNFSSSSALQIHM-RTHTGDK 45
C +C++ F+ L H + H+G+
Sbjct: 33 CGLCNRAFTRRDLLIRHAQKIHSGNL 58
Score = 27.1 bits (61), Expect = 0.67
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 104 KPFRCTICQKAFTTKGNLK 122
+ F C +C +AF + +LK
Sbjct: 1 RSFVCEVCTRAFARQEHLK 19
>2ent_A Krueppel-like factor 15; zinc binding, transcription factor,
adipogenesis, CLCNKA, chloride channel Ka, rhodopsin,
IRBP; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 48
Score = 55.8 bits (135), Expect = 9e-12
Identities = 18/73 (24%), Positives = 23/73 (31%), Gaps = 29/73 (39%)
Query: 37 HMRTHTGDKPFRCTICQKAFTTKGNLKLIPNAVFNVAGMPKHLCHVCHKNFSSSSALQIH 96
+ TG+KPF CT C FS S L H
Sbjct: 3 SGSSGTGEKPFACTW-----------------------------PGCGWRFSRSDELSRH 33
Query: 97 MRTHTGDKPFRCT 109
R+H+G KP +
Sbjct: 34 RRSHSGVKPSGPS 46
Score = 45.4 bits (108), Expect = 8e-08
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 24 CHKNFSSSSALQIHMRTHTGDKPFRCT 50
C FS S L H R+H+G KP +
Sbjct: 20 CGWRFSRSDELSRHRRSHSGVKPSGPS 46
Score = 37.3 bits (87), Expect = 1e-04
Identities = 10/29 (34%), Positives = 13/29 (44%), Gaps = 2/29 (6%)
Query: 96 HMRTHTGDKPFRCT--ICQKAFTTKGNLK 122
+ TG+KPF CT C F+ L
Sbjct: 3 SGSSGTGEKPFACTWPGCGWRFSRSDELS 31
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 73
Score = 55.4 bits (133), Expect = 3e-11
Identities = 16/77 (20%), Positives = 27/77 (35%), Gaps = 10/77 (12%)
Query: 30 SSSALQIHMRTHTGDKPFRCTICQKAFTTKGNLKLIPNAVFNVAGMPKHLCHVCHKNFSS 89
SS + + H GD+ +C+ C F + L + +C C K+
Sbjct: 2 SSGSSGKRQKIHLGDRSQKCSKCGIIFIRRSTL----------SRRKTPMCEKCRKDSCQ 51
Query: 90 SSALQIHMRTHTGDKPF 106
+AL +G K
Sbjct: 52 EAALNKDEGNESGKKTS 68
Score = 36.9 bits (85), Expect = 2e-04
Identities = 10/37 (27%), Positives = 17/37 (45%)
Query: 89 SSSALQIHMRTHTGDKPFRCTICQKAFTTKGNLKVRE 125
SS + + H GD+ +C+ C F + L R+
Sbjct: 2 SSGSSGKRQKIHLGDRSQKCSKCGIIFIRRSTLSRRK 38
Score = 31.9 bits (72), Expect = 0.016
Identities = 7/30 (23%), Positives = 11/30 (36%)
Query: 18 KHLCHVCHKNFSSSSALQIHMRTHTGDKPF 47
+C C K+ +AL +G K
Sbjct: 39 TPMCEKCRKDSCQEAALNKDEGNESGKKTS 68
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 54.0 bits (131), Expect = 3e-11
Identities = 20/73 (27%), Positives = 25/73 (34%), Gaps = 31/73 (42%)
Query: 36 IHMRTHTGDKPFRCTICQKAFTTKGNLKLIPNAVFNVAGMPKHLCHVCHKNFSSSSALQI 95
+ TG+KP+ C CQKAF TK S L +
Sbjct: 2 SSGSSGTGEKPYECNECQKAFNTK-------------------------------SNLMV 30
Query: 96 HMRTHTGDKPFRC 108
H RTHTG+
Sbjct: 31 HQRTHTGESGPSS 43
Score = 44.4 bits (106), Expect = 2e-07
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 95 IHMRTHTGDKPFRCTICQKAFTTKGNLKV 123
+ TG+KP+ C CQKAF TK NL V
Sbjct: 2 SSGSSGTGEKPYECNECQKAFNTKSNLMV 30
Score = 44.0 bits (105), Expect = 2e-07
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 21 CHVCHKNFSSSSALQIHMRTHTGDKPFRC 49
C+ C K F++ S L +H RTHTG+
Sbjct: 15 CNECQKAFNTKSNLMVHQRTHTGESGPSS 43
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 54
Score = 53.7 bits (130), Expect = 7e-11
Identities = 13/82 (15%), Positives = 24/82 (29%), Gaps = 32/82 (39%)
Query: 37 HMRTHTGDKPFRCTICQKAFTTKGNLKLIPNAVFNVAGMPKHLCHVCHKNFSSSSALQIH 96
+ + KP+ C C K F S L H
Sbjct: 3 SGSSGSVGKPYICQSCGKGF-------------------------------SRPDHLNGH 31
Query: 97 M-RTHTGDKPFRCTICQKAFTT 117
+ + HT ++P +C + ++
Sbjct: 32 IKQVHTSERPHKCQVWVSGPSS 53
Score = 51.4 bits (124), Expect = 5e-10
Identities = 11/39 (28%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 21 CHVCHKNFSSSSALQIHM-RTHTGDKPFRCTICQKAFTT 58
C C K FS L H+ + HT ++P +C + ++
Sbjct: 15 CQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSS 53
Score = 35.2 bits (82), Expect = 6e-04
Identities = 7/27 (25%), Positives = 12/27 (44%)
Query: 96 HMRTHTGDKPFRCTICQKAFTTKGNLK 122
+ + KP+ C C K F+ +L
Sbjct: 3 SGSSGSVGKPYICQSCGKGFSRPDHLN 29
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 52.9 bits (128), Expect = 1e-10
Identities = 19/72 (26%), Positives = 22/72 (30%), Gaps = 31/72 (43%)
Query: 37 HMRTHTGDKPFRCTICQKAFTTKGNLKLIPNAVFNVAGMPKHLCHVCHKNFSSSSALQIH 96
+ TG KP+ C C KAF S S L IH
Sbjct: 3 SGSSGTGMKPYVCNECGKAF-------------------------------RSKSYLIIH 31
Query: 97 MRTHTGDKPFRC 108
RTHTG+
Sbjct: 32 TRTHTGESGPSS 43
Score = 44.4 bits (106), Expect = 2e-07
Identities = 14/29 (48%), Positives = 16/29 (55%)
Query: 21 CHVCHKNFSSSSALQIHMRTHTGDKPFRC 49
C+ C K F S S L IH RTHTG+
Sbjct: 15 CNECGKAFRSKSYLIIHTRTHTGESGPSS 43
Score = 42.1 bits (100), Expect = 2e-06
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 96 HMRTHTGDKPFRCTICQKAFTTKGNLKV 123
+ TG KP+ C C KAF +K L +
Sbjct: 3 SGSSGTGMKPYVCNECGKAFRSKSYLII 30
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 52.6 bits (127), Expect = 1e-10
Identities = 21/73 (28%), Positives = 28/73 (38%), Gaps = 31/73 (42%)
Query: 37 HMRTHTGDKPFRCTICQKAFTTKGNLKLIPNAVFNVAGMPKHLCHVCHKNFSSSSALQIH 96
+ G+KP+ C+ C KAF SS S L IH
Sbjct: 3 SGSSGAGEKPYGCSECGKAF-------------------------------SSKSYLIIH 31
Query: 97 MRTHTGDKPFRCT 109
MRTH+G+KP +
Sbjct: 32 MRTHSGEKPSGPS 44
Score = 45.6 bits (109), Expect = 7e-08
Identities = 17/30 (56%), Positives = 20/30 (66%)
Query: 21 CHVCHKNFSSSSALQIHMRTHTGDKPFRCT 50
C C K FSS S L IHMRTH+G+KP +
Sbjct: 15 CSECGKAFSSKSYLIIHMRTHSGEKPSGPS 44
Score = 40.6 bits (96), Expect = 6e-06
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 96 HMRTHTGDKPFRCTICQKAFTTKGNLKV 123
+ G+KP+ C+ C KAF++K L +
Sbjct: 3 SGSSGAGEKPYGCSECGKAFSSKSYLII 30
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 42
Score = 52.5 bits (127), Expect = 1e-10
Identities = 15/70 (21%), Positives = 19/70 (27%), Gaps = 31/70 (44%)
Query: 37 HMRTHTGDKPFRCTICQKAFTTKGNLKLIPNAVFNVAGMPKHLCHVCHKNFSSSSALQIH 96
+ G+KP+ C IC F LK H
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLK-------------------------------SH 30
Query: 97 MRTHTGDKPF 106
+R HTG P
Sbjct: 31 LRIHTGSGPS 40
Score = 44.8 bits (107), Expect = 1e-07
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 21 CHVCHKNFSSSSALQIHMRTHTGDKPF 47
C +C F L+ H+R HTG P
Sbjct: 14 CEICGTRFRHLQTLKSHLRIHTGSGPS 40
Score = 44.0 bits (105), Expect = 3e-07
Identities = 9/28 (32%), Positives = 12/28 (42%)
Query: 96 HMRTHTGDKPFRCTICQKAFTTKGNLKV 123
+ G+KP+ C IC F LK
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKS 29
>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible
early growth response protein 1, TGFB-inducible early
growth response protein 1; NMR {Homo sapiens}
Length = 72
Score = 53.2 bits (128), Expect = 1e-10
Identities = 22/94 (23%), Positives = 31/94 (32%), Gaps = 31/94 (32%)
Query: 31 SSALQIHMRTHTGDKPFRCTICQKAFTTKGNLKLIPNAVFNVAGMPKHLCHVCHKNFSSS 90
SS + + C+ P C K + S
Sbjct: 2 SSGSSGPQIDSSRIRSHICSH--------------PG---------------CGKTYFKS 32
Query: 91 SALQIHMRTHTGDKPFRCTI--CQKAFTTKGNLK 122
S L+ H RTHTG+KPF C+ C++ F L
Sbjct: 33 SHLKAHTRTHTGEKPFSCSWKGCERRFARSDELS 66
Score = 52.4 bits (126), Expect = 3e-10
Identities = 25/85 (29%), Positives = 32/85 (37%), Gaps = 31/85 (36%)
Query: 18 KHLCHV--CHKNFSSSSALQIHMRTHTGDKPFRCTICQKAFTTKGNLKLIPNAVFNVAGM 75
H+C C K + SS L+ H RTHTG+KPF C+
Sbjct: 17 SHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSW------------------------ 52
Query: 76 PKHLCHVCHKNFSSSSALQIHMRTH 100
C + F+ S L H RTH
Sbjct: 53 -----KGCERRFARSDELSRHRRTH 72
Score = 33.5 bits (77), Expect = 0.004
Identities = 7/36 (19%), Positives = 12/36 (33%), Gaps = 2/36 (5%)
Query: 90 SSALQIHMRTHTGDKPFRCTI--CQKAFTTKGNLKV 123
SS + + C+ C K + +LK
Sbjct: 2 SSGSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKA 37
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 52.5 bits (127), Expect = 2e-10
Identities = 18/73 (24%), Positives = 28/73 (38%), Gaps = 31/73 (42%)
Query: 37 HMRTHTGDKPFRCTICQKAFTTKGNLKLIPNAVFNVAGMPKHLCHVCHKNFSSSSALQIH 96
+ TG+KP++C+ C KAFT K S L IH
Sbjct: 3 SGSSGTGEKPYKCSDCGKAFTRK-------------------------------SGLHIH 31
Query: 97 MRTHTGDKPFRCT 109
++HTG++ +
Sbjct: 32 QQSHTGERHSGPS 44
Score = 43.7 bits (104), Expect = 4e-07
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 96 HMRTHTGDKPFRCTICQKAFTTKGNLKV 123
+ TG+KP++C+ C KAFT K L +
Sbjct: 3 SGSSGTGEKPYKCSDCGKAFTRKSGLHI 30
Score = 42.9 bits (102), Expect = 6e-07
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 21 CHVCHKNFSSSSALQIHMRTHTGDKPFRCT 50
C C K F+ S L IH ++HTG++ +
Sbjct: 15 CSDCGKAFTRKSGLHIHQQSHTGERHSGPS 44
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 46
Score = 51.8 bits (125), Expect = 2e-10
Identities = 17/73 (23%), Positives = 25/73 (34%), Gaps = 31/73 (42%)
Query: 37 HMRTHTGDKPFRCTICQKAFTTKGNLKLIPNAVFNVAGMPKHLCHVCHKNFSSSSALQIH 96
+ TG +P+ C C KA F + S+L H
Sbjct: 3 SGSSGTGQRPYECIECGKA-------------------------------FKTKSSLICH 31
Query: 97 MRTHTGDKPFRCT 109
R+HTG+KP +
Sbjct: 32 RRSHTGEKPSGPS 44
Score = 44.5 bits (106), Expect = 2e-07
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 21 CHVCHKNFSSSSALQIHMRTHTGDKPFRCT 50
C C K F + S+L H R+HTG+KP +
Sbjct: 15 CIECGKAFKTKSSLICHRRSHTGEKPSGPS 44
Score = 40.2 bits (95), Expect = 7e-06
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 96 HMRTHTGDKPFRCTICQKAFTTKGNL 121
+ TG +P+ C C KAF TK +L
Sbjct: 3 SGSSGTGQRPYECIECGKAFKTKSSL 28
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.7 bits (125), Expect = 3e-10
Identities = 23/73 (31%), Positives = 29/73 (39%), Gaps = 31/73 (42%)
Query: 37 HMRTHTGDKPFRCTICQKAFTTKGNLKLIPNAVFNVAGMPKHLCHVCHKNFSSSSALQIH 96
+ TG+KPF C+ CQKAF TK NL +H
Sbjct: 3 SGSSGTGEKPFECSECQKAFNTKSNL-------------------------------IVH 31
Query: 97 MRTHTGDKPFRCT 109
RTHTG+KP +
Sbjct: 32 QRTHTGEKPSGPS 44
Score = 44.0 bits (105), Expect = 3e-07
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 21 CHVCHKNFSSSSALQIHMRTHTGDKPFRCT 50
C C K F++ S L +H RTHTG+KP +
Sbjct: 15 CSECQKAFNTKSNLIVHQRTHTGEKPSGPS 44
Score = 42.1 bits (100), Expect = 1e-06
Identities = 15/26 (57%), Positives = 18/26 (69%)
Query: 96 HMRTHTGDKPFRCTICQKAFTTKGNL 121
+ TG+KPF C+ CQKAF TK NL
Sbjct: 3 SGSSGTGEKPFECSECQKAFNTKSNL 28
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 51.8 bits (125), Expect = 3e-10
Identities = 15/72 (20%), Positives = 21/72 (29%), Gaps = 31/72 (43%)
Query: 37 HMRTHTGDKPFRCTICQKAFTTKGNLKLIPNAVFNVAGMPKHLCHVCHKNFSSSSALQIH 96
+ TG+KPF+C C FS S +L H
Sbjct: 3 SGSSGTGEKPFQCKECGMN-------------------------------FSWSCSLFKH 31
Query: 97 MRTHTGDKPFRC 108
+R+H P
Sbjct: 32 LRSHERTDPSGP 43
Score = 44.1 bits (105), Expect = 2e-07
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 21 CHVCHKNFSSSSALQIHMRTHTGDKPFRC 49
C C NFS S +L H+R+H P
Sbjct: 15 CKECGMNFSWSCSLFKHLRSHERTDPSGP 43
Score = 40.3 bits (95), Expect = 6e-06
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 96 HMRTHTGDKPFRCTICQKAFTTKGNLK 122
+ TG+KPF+C C F+ +L
Sbjct: 3 SGSSGTGEKPFQCKECGMNFSWSCSLF 29
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.8 bits (125), Expect = 3e-10
Identities = 18/74 (24%), Positives = 24/74 (32%), Gaps = 31/74 (41%)
Query: 36 IHMRTHTGDKPFRCTICQKAFTTKGNLKLIPNAVFNVAGMPKHLCHVCHKNFSSSSALQI 95
+ +G+KP+ C C K F S S L
Sbjct: 2 SSGSSGSGEKPYGCNECGKTF-------------------------------SQKSILSA 30
Query: 96 HMRTHTGDKPFRCT 109
H RTHTG+KP +
Sbjct: 31 HQRTHTGEKPSGPS 44
Score = 43.7 bits (104), Expect = 3e-07
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 21 CHVCHKNFSSSSALQIHMRTHTGDKPFRCT 50
C+ C K FS S L H RTHTG+KP +
Sbjct: 15 CNECGKTFSQKSILSAHQRTHTGEKPSGPS 44
Score = 41.4 bits (98), Expect = 2e-06
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 95 IHMRTHTGDKPFRCTICQKAFTTKGNLKV 123
+ +G+KP+ C C K F+ K L
Sbjct: 2 SSGSSGSGEKPYGCNECGKTFSQKSILSA 30
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 45
Score = 51.4 bits (124), Expect = 4e-10
Identities = 20/74 (27%), Positives = 24/74 (32%), Gaps = 31/74 (41%)
Query: 36 IHMRTHTGDKPFRCTICQKAFTTKGNLKLIPNAVFNVAGMPKHLCHVCHKNFSSSSALQI 95
+ TG KPF CT C K+F KGN L
Sbjct: 2 SSGSSGTGQKPFECTHCGKSFRAKGN-------------------------------LVT 30
Query: 96 HMRTHTGDKPFRCT 109
H R HTG+K +
Sbjct: 31 HQRIHTGEKSGPSS 44
Score = 43.3 bits (103), Expect = 4e-07
Identities = 14/29 (48%), Positives = 16/29 (55%)
Query: 95 IHMRTHTGDKPFRCTICQKAFTTKGNLKV 123
+ TG KPF CT C K+F KGNL
Sbjct: 2 SSGSSGTGQKPFECTHCGKSFRAKGNLVT 30
Score = 41.4 bits (98), Expect = 2e-06
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 21 CHVCHKNFSSSSALQIHMRTHTGDKPFRCT 50
C C K+F + L H R HTG+K +
Sbjct: 15 CTHCGKSFRAKGNLVTHQRIHTGEKSGPSS 44
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 51.0 bits (123), Expect = 6e-10
Identities = 19/73 (26%), Positives = 24/73 (32%), Gaps = 31/73 (42%)
Query: 37 HMRTHTGDKPFRCTICQKAFTTKGNLKLIPNAVFNVAGMPKHLCHVCHKNFSSSSALQIH 96
+ TG+KP +CT C KAF K S L +H
Sbjct: 3 SGSSGTGEKPCKCTECGKAFCWK-------------------------------SQLIMH 31
Query: 97 MRTHTGDKPFRCT 109
RTH DK +
Sbjct: 32 QRTHVDDKHSGPS 44
Score = 44.1 bits (105), Expect = 2e-07
Identities = 12/30 (40%), Positives = 14/30 (46%)
Query: 21 CHVCHKNFSSSSALQIHMRTHTGDKPFRCT 50
C C K F S L +H RTH DK +
Sbjct: 15 CTECGKAFCWKSQLIMHQRTHVDDKHSGPS 44
Score = 41.0 bits (97), Expect = 4e-06
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 96 HMRTHTGDKPFRCTICQKAFTTKGNLKV 123
+ TG+KP +CT C KAF K L +
Sbjct: 3 SGSSGTGEKPCKCTECGKAFCWKSQLIM 30
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.0 bits (123), Expect = 6e-10
Identities = 17/73 (23%), Positives = 28/73 (38%), Gaps = 31/73 (42%)
Query: 37 HMRTHTGDKPFRCTICQKAFTTKGNLKLIPNAVFNVAGMPKHLCHVCHKNFSSSSALQIH 96
+ TG+KP++C+ C K+FT K S L+IH
Sbjct: 3 SGSSGTGEKPYKCSDCGKSFTWK-------------------------------SRLRIH 31
Query: 97 MRTHTGDKPFRCT 109
+ HTG++ +
Sbjct: 32 QKCHTGERHSGPS 44
Score = 42.9 bits (102), Expect = 7e-07
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 96 HMRTHTGDKPFRCTICQKAFTTKGNLKV 123
+ TG+KP++C+ C K+FT K L++
Sbjct: 3 SGSSGTGEKPYKCSDCGKSFTWKSRLRI 30
Score = 42.5 bits (101), Expect = 8e-07
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 21 CHVCHKNFSSSSALQIHMRTHTGDKPFRCT 50
C C K+F+ S L+IH + HTG++ +
Sbjct: 15 CSDCGKSFTWKSRLRIHQKCHTGERHSGPS 44
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2ena_A 2en4_A
Length = 46
Score = 51.0 bits (123), Expect = 6e-10
Identities = 19/73 (26%), Positives = 26/73 (35%), Gaps = 31/73 (42%)
Query: 37 HMRTHTGDKPFRCTICQKAFTTKGNLKLIPNAVFNVAGMPKHLCHVCHKNFSSSSALQIH 96
+ TG+KPF+C C K F S SAL +H
Sbjct: 3 SGSSGTGEKPFKCVECGKGF-------------------------------SRRSALNVH 31
Query: 97 MRTHTGDKPFRCT 109
+ HTG+KP +
Sbjct: 32 HKLHTGEKPSGPS 44
Score = 43.7 bits (104), Expect = 3e-07
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 21 CHVCHKNFSSSSALQIHMRTHTGDKPFRCT 50
C C K FS SAL +H + HTG+KP +
Sbjct: 15 CVECGKGFSRRSALNVHHKLHTGEKPSGPS 44
Score = 40.6 bits (96), Expect = 4e-06
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 96 HMRTHTGDKPFRCTICQKAFTTKGNLKV 123
+ TG+KPF+C C K F+ + L V
Sbjct: 3 SGSSGTGEKPFKCVECGKGFSRRSALNV 30
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.0 bits (123), Expect = 6e-10
Identities = 17/74 (22%), Positives = 26/74 (35%), Gaps = 31/74 (41%)
Query: 36 IHMRTHTGDKPFRCTICQKAFTTKGNLKLIPNAVFNVAGMPKHLCHVCHKNFSSSSALQI 95
+ TG+KP+ C++C KAF S +L +
Sbjct: 2 SSGSSGTGEKPYECSVCGKAF-------------------------------SHRQSLSV 30
Query: 96 HMRTHTGDKPFRCT 109
H R H+G KP +
Sbjct: 31 HQRIHSGKKPSGPS 44
Score = 43.7 bits (104), Expect = 4e-07
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 21 CHVCHKNFSSSSALQIHMRTHTGDKPFRCT 50
C VC K FS +L +H R H+G KP +
Sbjct: 15 CSVCGKAFSHRQSLSVHQRIHSGKKPSGPS 44
Score = 41.3 bits (98), Expect = 3e-06
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 95 IHMRTHTGDKPFRCTICQKAFTTKGNLKV 123
+ TG+KP+ C++C KAF+ + +L V
Sbjct: 2 SSGSSGTGEKPYECSVCGKAFSHRQSLSV 30
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 50.6 bits (122), Expect = 7e-10
Identities = 19/74 (25%), Positives = 28/74 (37%), Gaps = 31/74 (41%)
Query: 36 IHMRTHTGDKPFRCTICQKAFTTKGNLKLIPNAVFNVAGMPKHLCHVCHKNFSSSSALQI 95
+ TG+KP+ C+IC K+FT K S L +
Sbjct: 2 SSGSSGTGEKPYECSICGKSFTKK-------------------------------SQLHV 30
Query: 96 HMRTHTGDKPFRCT 109
H + HTG+KP +
Sbjct: 31 HQQIHTGEKPSGPS 44
Score = 43.3 bits (103), Expect = 4e-07
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 21 CHVCHKNFSSSSALQIHMRTHTGDKPFRCT 50
C +C K+F+ S L +H + HTG+KP +
Sbjct: 15 CSICGKSFTKKSQLHVHQQIHTGEKPSGPS 44
Score = 42.5 bits (101), Expect = 1e-06
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 95 IHMRTHTGDKPFRCTICQKAFTTKGNLKV 123
+ TG+KP+ C+IC K+FT K L V
Sbjct: 2 SSGSSGTGEKPYECSICGKSFTKKSQLHV 30
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 50.6 bits (122), Expect = 7e-10
Identities = 17/73 (23%), Positives = 23/73 (31%), Gaps = 31/73 (42%)
Query: 37 HMRTHTGDKPFRCTICQKAFTTKGNLKLIPNAVFNVAGMPKHLCHVCHKNFSSSSALQIH 96
+ TG+KPF+C IC K+F S L H
Sbjct: 3 SGSSGTGEKPFKCDICGKSF-------------------------------CGRSRLNRH 31
Query: 97 MRTHTGDKPFRCT 109
HT +KP +
Sbjct: 32 SMVHTAEKPSGPS 44
Score = 44.0 bits (105), Expect = 2e-07
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 21 CHVCHKNFSSSSALQIHMRTHTGDKPFRCT 50
C +C K+F S L H HT +KP +
Sbjct: 15 CDICGKSFCGRSRLNRHSMVHTAEKPSGPS 44
Score = 41.3 bits (98), Expect = 3e-06
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 96 HMRTHTGDKPFRCTICQKAFTTKGNL 121
+ TG+KPF+C IC K+F + L
Sbjct: 3 SGSSGTGEKPFKCDICGKSFCGRSRL 28
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Length = 46
Score = 50.6 bits (122), Expect = 8e-10
Identities = 18/73 (24%), Positives = 25/73 (34%), Gaps = 31/73 (42%)
Query: 37 HMRTHTGDKPFRCTICQKAFTTKGNLKLIPNAVFNVAGMPKHLCHVCHKNFSSSSALQIH 96
+ TG KP+ C+ C K F+ K S L +H
Sbjct: 3 SGSSGTGVKPYGCSQCAKTFSLK-------------------------------SQLIVH 31
Query: 97 MRTHTGDKPFRCT 109
R+HTG KP +
Sbjct: 32 QRSHTGVKPSGPS 44
Score = 44.1 bits (105), Expect = 3e-07
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 21 CHVCHKNFSSSSALQIHMRTHTGDKPFRCT 50
C C K FS S L +H R+HTG KP +
Sbjct: 15 CSQCAKTFSLKSQLIVHQRSHTGVKPSGPS 44
Score = 41.0 bits (97), Expect = 4e-06
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 96 HMRTHTGDKPFRCTICQKAFTTKGNLKV 123
+ TG KP+ C+ C K F+ K L V
Sbjct: 3 SGSSGTGVKPYGCSQCAKTFSLKSQLIV 30
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 50.6 bits (122), Expect = 8e-10
Identities = 12/70 (17%), Positives = 19/70 (27%), Gaps = 31/70 (44%)
Query: 37 HMRTHTGDKPFRCTICQKAFTTKGNLKLIPNAVFNVAGMPKHLCHVCHKNFSSSSALQIH 96
+ G+KP++C C F +L+ H
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLR-------------------------------AH 30
Query: 97 MRTHTGDKPF 106
+ HTG P
Sbjct: 31 VLIHTGSGPS 40
Score = 43.7 bits (104), Expect = 3e-07
Identities = 7/27 (25%), Positives = 13/27 (48%)
Query: 96 HMRTHTGDKPFRCTICQKAFTTKGNLK 122
+ G+KP++C C F +L+
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLR 28
Score = 42.5 bits (101), Expect = 9e-07
Identities = 9/27 (33%), Positives = 12/27 (44%)
Query: 21 CHVCHKNFSSSSALQIHMRTHTGDKPF 47
C C F + L+ H+ HTG P
Sbjct: 14 CETCGARFVQVAHLRAHVLIHTGSGPS 40
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 44
Score = 50.2 bits (121), Expect = 9e-10
Identities = 15/72 (20%), Positives = 20/72 (27%), Gaps = 31/72 (43%)
Query: 37 HMRTHTGDKPFRCTICQKAFTTKGNLKLIPNAVFNVAGMPKHLCHVCHKNFSSSSALQIH 96
+ +G+KP+ C C KAF S L +H
Sbjct: 3 SGSSGSGEKPYECNECGKAF-------------------------------IWKSLLIVH 31
Query: 97 MRTHTGDKPFRC 108
RTH G
Sbjct: 32 ERTHAGVSGPSS 43
Score = 43.3 bits (103), Expect = 4e-07
Identities = 11/29 (37%), Positives = 13/29 (44%)
Query: 21 CHVCHKNFSSSSALQIHMRTHTGDKPFRC 49
C+ C K F S L +H RTH G
Sbjct: 15 CNECGKAFIWKSLLIVHERTHAGVSGPSS 43
Score = 40.6 bits (96), Expect = 4e-06
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 96 HMRTHTGDKPFRCTICQKAFTTKGNLKV 123
+ +G+KP+ C C KAF K L V
Sbjct: 3 SGSSGSGEKPYECNECGKAFIWKSLLIV 30
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2eoi_A
Length = 46
Score = 50.2 bits (121), Expect = 1e-09
Identities = 20/73 (27%), Positives = 25/73 (34%), Gaps = 31/73 (42%)
Query: 37 HMRTHTGDKPFRCTICQKAFTTKGNLKLIPNAVFNVAGMPKHLCHVCHKNFSSSSALQIH 96
+ TG+KPF C C K+F S SS L H
Sbjct: 3 SGSSGTGEKPFECAECGKSF-------------------------------SISSQLATH 31
Query: 97 MRTHTGDKPFRCT 109
R HTG+KP +
Sbjct: 32 QRIHTGEKPSGPS 44
Score = 42.9 bits (102), Expect = 6e-07
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 21 CHVCHKNFSSSSALQIHMRTHTGDKPFRCT 50
C C K+FS SS L H R HTG+KP +
Sbjct: 15 CAECGKSFSISSQLATHQRIHTGEKPSGPS 44
Score = 40.2 bits (95), Expect = 7e-06
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 96 HMRTHTGDKPFRCTICQKAFTTKGNLKV 123
+ TG+KPF C C K+F+ L
Sbjct: 3 SGSSGTGEKPFECAECGKSFSISSQLAT 30
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 50.2 bits (121), Expect = 1e-09
Identities = 18/74 (24%), Positives = 25/74 (33%), Gaps = 31/74 (41%)
Query: 36 IHMRTHTGDKPFRCTICQKAFTTKGNLKLIPNAVFNVAGMPKHLCHVCHKNFSSSSALQI 95
+ G+K ++C +C K F S SS LQ
Sbjct: 2 SSGSSGMGEKCYKCDVCGKEF-------------------------------SQSSHLQT 30
Query: 96 HMRTHTGDKPFRCT 109
H R HTG+KP +
Sbjct: 31 HQRVHTGEKPSGPS 44
Score = 44.8 bits (107), Expect = 1e-07
Identities = 17/30 (56%), Positives = 19/30 (63%)
Query: 21 CHVCHKNFSSSSALQIHMRTHTGDKPFRCT 50
C VC K FS SS LQ H R HTG+KP +
Sbjct: 15 CDVCGKEFSQSSHLQTHQRVHTGEKPSGPS 44
Score = 39.0 bits (92), Expect = 2e-05
Identities = 7/27 (25%), Positives = 14/27 (51%)
Query: 95 IHMRTHTGDKPFRCTICQKAFTTKGNL 121
+ G+K ++C +C K F+ +L
Sbjct: 2 SSGSSGMGEKCYKCDVCGKEFSQSSHL 28
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 50.2 bits (121), Expect = 1e-09
Identities = 18/73 (24%), Positives = 27/73 (36%), Gaps = 31/73 (42%)
Query: 37 HMRTHTGDKPFRCTICQKAFTTKGNLKLIPNAVFNVAGMPKHLCHVCHKNFSSSSALQIH 96
+ TG+KP++C C KAF + S+L IH
Sbjct: 3 SGSSGTGEKPYKCNECGKAF-------------------------------RARSSLAIH 31
Query: 97 MRTHTGDKPFRCT 109
TH+G+KP +
Sbjct: 32 QATHSGEKPSGPS 44
Score = 43.7 bits (104), Expect = 3e-07
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 21 CHVCHKNFSSSSALQIHMRTHTGDKPFRCT 50
C+ C K F + S+L IH TH+G+KP +
Sbjct: 15 CNECGKAFRARSSLAIHQATHSGEKPSGPS 44
Score = 39.4 bits (93), Expect = 1e-05
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 96 HMRTHTGDKPFRCTICQKAFTTKGNLKV 123
+ TG+KP++C C KAF + +L +
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRARSSLAI 30
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 50.2 bits (121), Expect = 1e-09
Identities = 16/73 (21%), Positives = 25/73 (34%), Gaps = 31/73 (42%)
Query: 37 HMRTHTGDKPFRCTICQKAFTTKGNLKLIPNAVFNVAGMPKHLCHVCHKNFSSSSALQIH 96
+ TG++ + C+ C KAF + S L +H
Sbjct: 3 SGSSGTGERHYECSECGKAF-------------------------------ARKSTLIMH 31
Query: 97 MRTHTGDKPFRCT 109
R HTG+KP +
Sbjct: 32 QRIHTGEKPSGPS 44
Score = 42.5 bits (101), Expect = 1e-06
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 21 CHVCHKNFSSSSALQIHMRTHTGDKPFRCT 50
C C K F+ S L +H R HTG+KP +
Sbjct: 15 CSECGKAFARKSTLIMHQRIHTGEKPSGPS 44
Score = 40.6 bits (96), Expect = 4e-06
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 96 HMRTHTGDKPFRCTICQKAFTTKGNL 121
+ TG++ + C+ C KAF K L
Sbjct: 3 SGSSGTGERHYECSECGKAFARKSTL 28
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 49.8 bits (120), Expect = 1e-09
Identities = 14/74 (18%), Positives = 25/74 (33%), Gaps = 31/74 (41%)
Query: 36 IHMRTHTGDKPFRCTICQKAFTTKGNLKLIPNAVFNVAGMPKHLCHVCHKNFSSSSALQI 95
+ TG+KP++C C K + +S L +
Sbjct: 2 SSGSSGTGEKPYKCEKCGKGY-------------------------------NSKFNLDM 30
Query: 96 HMRTHTGDKPFRCT 109
H + HTG++P +
Sbjct: 31 HQKVHTGERPSGPS 44
Score = 42.5 bits (101), Expect = 8e-07
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 21 CHVCHKNFSSSSALQIHMRTHTGDKPFRCT 50
C C K ++S L +H + HTG++P +
Sbjct: 15 CEKCGKGYNSKFNLDMHQKVHTGERPSGPS 44
Score = 42.1 bits (100), Expect = 1e-06
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 95 IHMRTHTGDKPFRCTICQKAFTTKGNLKV 123
+ TG+KP++C C K + +K NL +
Sbjct: 2 SSGSSGTGEKPYKCEKCGKGYNSKFNLDM 30
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 49.8 bits (120), Expect = 1e-09
Identities = 15/73 (20%), Positives = 23/73 (31%), Gaps = 31/73 (42%)
Query: 37 HMRTHTGDKPFRCTICQKAFTTKGNLKLIPNAVFNVAGMPKHLCHVCHKNFSSSSALQIH 96
+ TG+KP+ C +C KAF S+ L H
Sbjct: 3 SGSSGTGEKPYSCNVCGKAF-------------------------------VLSAHLNQH 31
Query: 97 MRTHTGDKPFRCT 109
+R HT + +
Sbjct: 32 LRVHTQETLSGPS 44
Score = 43.7 bits (104), Expect = 4e-07
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 21 CHVCHKNFSSSSALQIHMRTHTGDKPFRCT 50
C+VC K F S+ L H+R HT + +
Sbjct: 15 CNVCGKAFVLSAHLNQHLRVHTQETLSGPS 44
Score = 39.8 bits (94), Expect = 1e-05
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 96 HMRTHTGDKPFRCTICQKAFTTKGNL 121
+ TG+KP+ C +C KAF +L
Sbjct: 3 SGSSGTGEKPYSCNVCGKAFVLSAHL 28
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 49.8 bits (120), Expect = 1e-09
Identities = 17/74 (22%), Positives = 27/74 (36%), Gaps = 31/74 (41%)
Query: 36 IHMRTHTGDKPFRCTICQKAFTTKGNLKLIPNAVFNVAGMPKHLCHVCHKNFSSSSALQI 95
+ TG+KP+ C +C+KAF S ++L
Sbjct: 2 SSGSSGTGEKPYECDVCRKAF-------------------------------SHHASLTQ 30
Query: 96 HMRTHTGDKPFRCT 109
H R H+G+KP +
Sbjct: 31 HQRVHSGEKPSGPS 44
Score = 42.5 bits (101), Expect = 9e-07
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 21 CHVCHKNFSSSSALQIHMRTHTGDKPFRCT 50
C VC K FS ++L H R H+G+KP +
Sbjct: 15 CDVCRKAFSHHASLTQHQRVHSGEKPSGPS 44
Score = 39.4 bits (93), Expect = 2e-05
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 95 IHMRTHTGDKPFRCTICQKAFTTKGNL 121
+ TG+KP+ C +C+KAF+ +L
Sbjct: 2 SSGSSGTGEKPYECDVCRKAFSHHASL 28
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 49.8 bits (120), Expect = 2e-09
Identities = 18/73 (24%), Positives = 25/73 (34%), Gaps = 31/73 (42%)
Query: 37 HMRTHTGDKPFRCTICQKAFTTKGNLKLIPNAVFNVAGMPKHLCHVCHKNFSSSSALQIH 96
+ TG+ PF C+ C K FT K N L IH
Sbjct: 3 SGSSGTGENPFICSECGKVFTHKTN-------------------------------LIIH 31
Query: 97 MRTHTGDKPFRCT 109
+ HTG++P +
Sbjct: 32 QKIHTGERPSGPS 44
Score = 42.5 bits (101), Expect = 1e-06
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 96 HMRTHTGDKPFRCTICQKAFTTKGNL 121
+ TG+ PF C+ C K FT K NL
Sbjct: 3 SGSSGTGENPFICSECGKVFTHKTNL 28
Score = 42.1 bits (100), Expect = 1e-06
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 21 CHVCHKNFSSSSALQIHMRTHTGDKPFRCT 50
C C K F+ + L IH + HTG++P +
Sbjct: 15 CSECGKVFTHKTNLIIHQKIHTGERPSGPS 44
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 49.4 bits (119), Expect = 2e-09
Identities = 15/73 (20%), Positives = 23/73 (31%), Gaps = 31/73 (42%)
Query: 37 HMRTHTGDKPFRCTICQKAFTTKGNLKLIPNAVFNVAGMPKHLCHVCHKNFSSSSALQIH 96
+ TG+K + C C K+F S + L H
Sbjct: 3 SGSSGTGEKLYNCKECGKSF-------------------------------SRAPCLLKH 31
Query: 97 MRTHTGDKPFRCT 109
R H+G+KP +
Sbjct: 32 ERLHSGEKPSGPS 44
Score = 43.3 bits (103), Expect = 5e-07
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 21 CHVCHKNFSSSSALQIHMRTHTGDKPFRCT 50
C C K+FS + L H R H+G+KP +
Sbjct: 15 CKECGKSFSRAPCLLKHERLHSGEKPSGPS 44
Score = 38.7 bits (91), Expect = 3e-05
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 96 HMRTHTGDKPFRCTICQKAFTTKGNL 121
+ TG+K + C C K+F+ L
Sbjct: 3 SGSSGTGEKLYNCKECGKSFSRAPCL 28
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 49.4 bits (119), Expect = 3e-09
Identities = 17/73 (23%), Positives = 27/73 (36%), Gaps = 31/73 (42%)
Query: 37 HMRTHTGDKPFRCTICQKAFTTKGNLKLIPNAVFNVAGMPKHLCHVCHKNFSSSSALQIH 96
+ TG+KP++C +C K+F S+L +H
Sbjct: 3 SGSSGTGEKPYKCDVCHKSF-------------------------------RYGSSLTVH 31
Query: 97 MRTHTGDKPFRCT 109
R HTG+KP +
Sbjct: 32 QRIHTGEKPSGPS 44
Score = 45.2 bits (108), Expect = 1e-07
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 21 CHVCHKNFSSSSALQIHMRTHTGDKPFRCT 50
C VCHK+F S+L +H R HTG+KP +
Sbjct: 15 CDVCHKSFRYGSSLTVHQRIHTGEKPSGPS 44
Score = 39.0 bits (92), Expect = 2e-05
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 96 HMRTHTGDKPFRCTICQKAFTTKGNLKV 123
+ TG+KP++C +C K+F +L V
Sbjct: 3 SGSSGTGEKPYKCDVCHKSFRYGSSLTV 30
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 49.1 bits (118), Expect = 3e-09
Identities = 15/73 (20%), Positives = 25/73 (34%), Gaps = 31/73 (42%)
Query: 37 HMRTHTGDKPFRCTICQKAFTTKGNLKLIPNAVFNVAGMPKHLCHVCHKNFSSSSALQIH 96
+ +G+KPF+C C K F ++S H
Sbjct: 3 SGSSGSGEKPFKCEECGKGF-------------------------------YTNSQCYSH 31
Query: 97 MRTHTGDKPFRCT 109
R+H+G+KP +
Sbjct: 32 QRSHSGEKPSGPS 44
Score = 42.5 bits (101), Expect = 8e-07
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 21 CHVCHKNFSSSSALQIHMRTHTGDKPFRCT 50
C C K F ++S H R+H+G+KP +
Sbjct: 15 CEECGKGFYTNSQCYSHQRSHSGEKPSGPS 44
Score = 40.2 bits (95), Expect = 7e-06
Identities = 9/26 (34%), Positives = 13/26 (50%)
Query: 96 HMRTHTGDKPFRCTICQKAFTTKGNL 121
+ +G+KPF+C C K F T
Sbjct: 3 SGSSGSGEKPFKCEECGKGFYTNSQC 28
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 49.1 bits (118), Expect = 3e-09
Identities = 20/73 (27%), Positives = 25/73 (34%), Gaps = 31/73 (42%)
Query: 37 HMRTHTGDKPFRCTICQKAFTTKGNLKLIPNAVFNVAGMPKHLCHVCHKNFSSSSALQIH 96
+ TG K F CT C KAFT K S L +H
Sbjct: 3 SGSSGTGGKHFECTECGKAFTRK-------------------------------STLSMH 31
Query: 97 MRTHTGDKPFRCT 109
+ HTG+KP +
Sbjct: 32 QKIHTGEKPSGPS 44
Score = 41.7 bits (99), Expect = 2e-06
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 21 CHVCHKNFSSSSALQIHMRTHTGDKPFRCT 50
C C K F+ S L +H + HTG+KP +
Sbjct: 15 CTECGKAFTRKSTLSMHQKIHTGEKPSGPS 44
Score = 41.0 bits (97), Expect = 4e-06
Identities = 13/26 (50%), Positives = 14/26 (53%)
Query: 96 HMRTHTGDKPFRCTICQKAFTTKGNL 121
+ TG K F CT C KAFT K L
Sbjct: 3 SGSSGTGGKHFECTECGKAFTRKSTL 28
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 49.1 bits (118), Expect = 3e-09
Identities = 19/73 (26%), Positives = 23/73 (31%), Gaps = 31/73 (42%)
Query: 37 HMRTHTGDKPFRCTICQKAFTTKGNLKLIPNAVFNVAGMPKHLCHVCHKNFSSSSALQIH 96
+ TG+KPF C C KAF S L H
Sbjct: 3 SGSSGTGEKPFDCIDCGKAF-------------------------------SDHIGLNQH 31
Query: 97 MRTHTGDKPFRCT 109
R HTG+KP +
Sbjct: 32 RRIHTGEKPSGPS 44
Score = 42.9 bits (102), Expect = 7e-07
Identities = 13/30 (43%), Positives = 15/30 (50%)
Query: 21 CHVCHKNFSSSSALQIHMRTHTGDKPFRCT 50
C C K FS L H R HTG+KP +
Sbjct: 15 CIDCGKAFSDHIGLNQHRRIHTGEKPSGPS 44
Score = 39.0 bits (92), Expect = 2e-05
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 96 HMRTHTGDKPFRCTICQKAFTTKGNL 121
+ TG+KPF C C KAF+ L
Sbjct: 3 SGSSGTGEKPFDCIDCGKAFSDHIGL 28
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 49.0 bits (118), Expect = 3e-09
Identities = 12/73 (16%), Positives = 22/73 (30%), Gaps = 31/73 (42%)
Query: 37 HMRTHTGDKPFRCTICQKAFTTKGNLKLIPNAVFNVAGMPKHLCHVCHKNFSSSSALQIH 96
+ + +KP++C C K + + NL +H
Sbjct: 3 SGSSGSVEKPYKCEDCGKGYNRRLNL-------------------------------DMH 31
Query: 97 MRTHTGDKPFRCT 109
R H G+K +
Sbjct: 32 QRVHMGEKTSGPS 44
Score = 43.6 bits (104), Expect = 4e-07
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 21 CHVCHKNFSSSSALQIHMRTHTGDKPFRCT 50
C C K ++ L +H R H G+K +
Sbjct: 15 CEDCGKGYNRRLNLDMHQRVHMGEKTSGPS 44
Score = 40.9 bits (97), Expect = 3e-06
Identities = 7/26 (26%), Positives = 14/26 (53%)
Query: 96 HMRTHTGDKPFRCTICQKAFTTKGNL 121
+ + +KP++C C K + + NL
Sbjct: 3 SGSSGSVEKPYKCEDCGKGYNRRLNL 28
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 49.1 bits (118), Expect = 3e-09
Identities = 13/73 (17%), Positives = 23/73 (31%), Gaps = 31/73 (42%)
Query: 37 HMRTHTGDKPFRCTICQKAFTTKGNLKLIPNAVFNVAGMPKHLCHVCHKNFSSSSALQIH 96
+ +G+KP++C C K + + +L H
Sbjct: 3 SGSSGSGEKPYKCVECGKGYKRRLDL-------------------------------DFH 31
Query: 97 MRTHTGDKPFRCT 109
R HTG+K +
Sbjct: 32 QRVHTGEKLSGPS 44
Score = 42.1 bits (100), Expect = 1e-06
Identities = 10/30 (33%), Positives = 13/30 (43%)
Query: 21 CHVCHKNFSSSSALQIHMRTHTGDKPFRCT 50
C C K + L H R HTG+K +
Sbjct: 15 CVECGKGYKRRLDLDFHQRVHTGEKLSGPS 44
Score = 41.0 bits (97), Expect = 4e-06
Identities = 7/28 (25%), Positives = 15/28 (53%)
Query: 96 HMRTHTGDKPFRCTICQKAFTTKGNLKV 123
+ +G+KP++C C K + + +L
Sbjct: 3 SGSSGSGEKPYKCVECGKGYKRRLDLDF 30
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 48.7 bits (117), Expect = 4e-09
Identities = 17/73 (23%), Positives = 22/73 (30%), Gaps = 31/73 (42%)
Query: 37 HMRTHTGDKPFRCTICQKAFTTKGNLKLIPNAVFNVAGMPKHLCHVCHKNFSSSSALQIH 96
+ TG+ P+ C C KAF S L H
Sbjct: 3 SGSSGTGENPYECHECGKAF-------------------------------SRKYQLISH 31
Query: 97 MRTHTGDKPFRCT 109
RTH G+KP +
Sbjct: 32 QRTHAGEKPSGPS 44
Score = 43.3 bits (103), Expect = 6e-07
Identities = 14/30 (46%), Positives = 16/30 (53%)
Query: 21 CHVCHKNFSSSSALQIHMRTHTGDKPFRCT 50
CH C K FS L H RTH G+KP +
Sbjct: 15 CHECGKAFSRKYQLISHQRTHAGEKPSGPS 44
Score = 39.4 bits (93), Expect = 1e-05
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 96 HMRTHTGDKPFRCTICQKAFTTKGNL 121
+ TG+ P+ C C KAF+ K L
Sbjct: 3 SGSSGTGENPYECHECGKAFSRKYQL 28
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 48.7 bits (117), Expect = 4e-09
Identities = 15/73 (20%), Positives = 21/73 (28%), Gaps = 31/73 (42%)
Query: 37 HMRTHTGDKPFRCTICQKAFTTKGNLKLIPNAVFNVAGMPKHLCHVCHKNFSSSSALQIH 96
+ TG+KP++C C K F L H
Sbjct: 3 SGSSGTGEKPYKCEECGKGF-------------------------------ICRRDLYTH 31
Query: 97 MRTHTGDKPFRCT 109
HTG+KP +
Sbjct: 32 HMVHTGEKPSGPS 44
Score = 43.7 bits (104), Expect = 4e-07
Identities = 11/30 (36%), Positives = 13/30 (43%)
Query: 21 CHVCHKNFSSSSALQIHMRTHTGDKPFRCT 50
C C K F L H HTG+KP +
Sbjct: 15 CEECGKGFICRRDLYTHHMVHTGEKPSGPS 44
Score = 38.7 bits (91), Expect = 3e-05
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 96 HMRTHTGDKPFRCTICQKAFTTKGNL 121
+ TG+KP++C C K F + +L
Sbjct: 3 SGSSGTGEKPYKCEECGKGFICRRDL 28
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens}
Length = 46
Score = 48.7 bits (117), Expect = 4e-09
Identities = 13/73 (17%), Positives = 23/73 (31%), Gaps = 31/73 (42%)
Query: 37 HMRTHTGDKPFRCTICQKAFTTKGNLKLIPNAVFNVAGMPKHLCHVCHKNFSSSSALQIH 96
+ G+K ++C C F S +S+L++H
Sbjct: 3 SGSSGMGEKTWKCRECDMCF-------------------------------SQASSLRLH 31
Query: 97 MRTHTGDKPFRCT 109
H G+KP +
Sbjct: 32 QNVHVGEKPSGPS 44
Score = 44.5 bits (106), Expect = 2e-07
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 21 CHVCHKNFSSSSALQIHMRTHTGDKPFRCT 50
C C FS +S+L++H H G+KP +
Sbjct: 15 CRECDMCFSQASSLRLHQNVHVGEKPSGPS 44
Score = 40.2 bits (95), Expect = 7e-06
Identities = 6/28 (21%), Positives = 14/28 (50%)
Query: 96 HMRTHTGDKPFRCTICQKAFTTKGNLKV 123
+ G+K ++C C F+ +L++
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQASSLRL 30
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 48.7 bits (117), Expect = 4e-09
Identities = 17/72 (23%), Positives = 24/72 (33%), Gaps = 31/72 (43%)
Query: 37 HMRTHTGDKPFRCTICQKAFTTKGNLKLIPNAVFNVAGMPKHLCHVCHKNFSSSSALQIH 96
+ TG+KP+ C+ C K+F K S L +H
Sbjct: 3 SGSSGTGEKPYECSDCGKSFIKK-------------------------------SQLHVH 31
Query: 97 MRTHTGDKPFRC 108
R HTG+ P
Sbjct: 32 QRIHTGENPSGP 43
Score = 41.8 bits (99), Expect = 2e-06
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 21 CHVCHKNFSSSSALQIHMRTHTGDKPFRC 49
C C K+F S L +H R HTG+ P
Sbjct: 15 CSDCGKSFIKKSQLHVHQRIHTGENPSGP 43
Score = 41.4 bits (98), Expect = 2e-06
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 96 HMRTHTGDKPFRCTICQKAFTTKGNLKV 123
+ TG+KP+ C+ C K+F K L V
Sbjct: 3 SGSSGTGEKPYECSDCGKSFIKKSQLHV 30
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 48.7 bits (117), Expect = 4e-09
Identities = 17/73 (23%), Positives = 24/73 (32%), Gaps = 31/73 (42%)
Query: 37 HMRTHTGDKPFRCTICQKAFTTKGNLKLIPNAVFNVAGMPKHLCHVCHKNFSSSSALQIH 96
+ TG+KP C C K+F S +S L +H
Sbjct: 3 SGSSGTGEKPHECRECGKSF-------------------------------SFNSQLIVH 31
Query: 97 MRTHTGDKPFRCT 109
R HTG+ P +
Sbjct: 32 QRIHTGENPSGPS 44
Score = 42.5 bits (101), Expect = 1e-06
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 21 CHVCHKNFSSSSALQIHMRTHTGDKPFRCT 50
C C K+FS +S L +H R HTG+ P +
Sbjct: 15 CRECGKSFSFNSQLIVHQRIHTGENPSGPS 44
Score = 37.9 bits (89), Expect = 5e-05
Identities = 9/26 (34%), Positives = 13/26 (50%)
Query: 96 HMRTHTGDKPFRCTICQKAFTTKGNL 121
+ TG+KP C C K+F+ L
Sbjct: 3 SGSSGTGEKPHECRECGKSFSFNSQL 28
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens}
Length = 46
Score = 48.7 bits (117), Expect = 4e-09
Identities = 14/73 (19%), Positives = 24/73 (32%), Gaps = 31/73 (42%)
Query: 37 HMRTHTGDKPFRCTICQKAFTTKGNLKLIPNAVFNVAGMPKHLCHVCHKNFSSSSALQIH 96
+ G P++C+ C+K+F+ K L +H
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGK-------------------------------LRLLVH 31
Query: 97 MRTHTGDKPFRCT 109
R HT +KP +
Sbjct: 32 QRMHTREKPSGPS 44
Score = 44.1 bits (105), Expect = 3e-07
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 21 CHVCHKNFSSSSALQIHMRTHTGDKPFRCT 50
C C K+FS L +H R HT +KP +
Sbjct: 15 CSQCEKSFSGKLRLLVHQRMHTREKPSGPS 44
Score = 41.0 bits (97), Expect = 3e-06
Identities = 9/28 (32%), Positives = 16/28 (57%)
Query: 96 HMRTHTGDKPFRCTICQKAFTTKGNLKV 123
+ G P++C+ C+K+F+ K L V
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRLLV 30
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 48.7 bits (117), Expect = 5e-09
Identities = 17/73 (23%), Positives = 25/73 (34%), Gaps = 31/73 (42%)
Query: 37 HMRTHTGDKPFRCTICQKAFTTKGNLKLIPNAVFNVAGMPKHLCHVCHKNFSSSSALQIH 96
+ +G+KPF+C C K F + +S L H
Sbjct: 3 SGSSGSGEKPFKCEECGKRF-------------------------------TQNSQLHSH 31
Query: 97 MRTHTGDKPFRCT 109
R HTG+KP +
Sbjct: 32 QRVHTGEKPSGPS 44
Score = 42.5 bits (101), Expect = 1e-06
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 21 CHVCHKNFSSSSALQIHMRTHTGDKPFRCT 50
C C K F+ +S L H R HTG+KP +
Sbjct: 15 CEECGKRFTQNSQLHSHQRVHTGEKPSGPS 44
Score = 39.8 bits (94), Expect = 1e-05
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 96 HMRTHTGDKPFRCTICQKAFTTKGNL 121
+ +G+KPF+C C K FT L
Sbjct: 3 SGSSGSGEKPFKCEECGKRFTQNSQL 28
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 48.7 bits (117), Expect = 5e-09
Identities = 17/73 (23%), Positives = 25/73 (34%), Gaps = 31/73 (42%)
Query: 37 HMRTHTGDKPFRCTICQKAFTTKGNLKLIPNAVFNVAGMPKHLCHVCHKNFSSSSALQIH 96
+ G K F+C C+K F + SS+L +H
Sbjct: 3 SGSSGAGKKLFKCNECKKTF-------------------------------TQSSSLTVH 31
Query: 97 MRTHTGDKPFRCT 109
R HTG+KP +
Sbjct: 32 QRIHTGEKPSGPS 44
Score = 43.3 bits (103), Expect = 5e-07
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 21 CHVCHKNFSSSSALQIHMRTHTGDKPFRCT 50
C+ C K F+ SS+L +H R HTG+KP +
Sbjct: 15 CNECKKTFTQSSSLTVHQRIHTGEKPSGPS 44
Score = 39.4 bits (93), Expect = 1e-05
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 96 HMRTHTGDKPFRCTICQKAFTTKGNLKV 123
+ G K F+C C+K FT +L V
Sbjct: 3 SGSSGAGKKLFKCNECKKTFTQSSSLTV 30
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 48.7 bits (117), Expect = 5e-09
Identities = 11/73 (15%), Positives = 20/73 (27%), Gaps = 31/73 (42%)
Query: 37 HMRTHTGDKPFRCTICQKAFTTKGNLKLIPNAVFNVAGMPKHLCHVCHKNFSSSSALQIH 96
+ +G++P+ C C K F S L H
Sbjct: 3 SGSSGSGERPYGCNECGKNF-------------------------------GRHSHLIEH 31
Query: 97 MRTHTGDKPFRCT 109
++ H +K +
Sbjct: 32 LKRHFREKSSGPS 44
Score = 43.3 bits (103), Expect = 4e-07
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 21 CHVCHKNFSSSSALQIHMRTHTGDKPFRCT 50
C+ C KNF S L H++ H +K +
Sbjct: 15 CNECGKNFGRHSHLIEHLKRHFREKSSGPS 44
Score = 36.3 bits (85), Expect = 2e-04
Identities = 7/26 (26%), Positives = 13/26 (50%)
Query: 96 HMRTHTGDKPFRCTICQKAFTTKGNL 121
+ +G++P+ C C K F +L
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHSHL 28
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 48.3 bits (116), Expect = 5e-09
Identities = 17/71 (23%), Positives = 27/71 (38%), Gaps = 31/71 (43%)
Query: 39 RTHTGDKPFRCTICQKAFTTKGNLKLIPNAVFNVAGMPKHLCHVCHKNFSSSSALQIHMR 98
+G+KPF C+ C+KAF++K S L +H +
Sbjct: 3 SGSSGEKPFGCSCCEKAFSSK-------------------------------SYLLVHQQ 31
Query: 99 THTGDKPFRCT 109
TH +KP +
Sbjct: 32 THAEEKPSGPS 42
Score = 46.0 bits (110), Expect = 4e-08
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 21 CHVCHKNFSSSSALQIHMRTHTGDKPFRCT 50
C C K FSS S L +H +TH +KP +
Sbjct: 13 CSCCEKAFSSKSYLLVHQQTHAEEKPSGPS 42
Score = 37.5 bits (88), Expect = 7e-05
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 98 RTHTGDKPFRCTICQKAFTTKGNLKV 123
+G+KPF C+ C+KAF++K L V
Sbjct: 3 SGSSGEKPFGCSCCEKAFSSKSYLLV 28
>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 48.3 bits (116), Expect = 6e-09
Identities = 18/73 (24%), Positives = 23/73 (31%), Gaps = 31/73 (42%)
Query: 37 HMRTHTGDKPFRCTICQKAFTTKGNLKLIPNAVFNVAGMPKHLCHVCHKNFSSSSALQIH 96
+ TG+KP+ C C KAF S S+L H
Sbjct: 3 SGSSGTGEKPYECNQCGKAF-------------------------------SVRSSLTTH 31
Query: 97 MRTHTGDKPFRCT 109
HTG KP +
Sbjct: 32 QAIHTGKKPSGPS 44
Score = 42.1 bits (100), Expect = 1e-06
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 21 CHVCHKNFSSSSALQIHMRTHTGDKPFRCT 50
C+ C K FS S+L H HTG KP +
Sbjct: 15 CNQCGKAFSVRSSLTTHQAIHTGKKPSGPS 44
Score = 39.1 bits (92), Expect = 2e-05
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 96 HMRTHTGDKPFRCTICQKAFTTKGNL 121
+ TG+KP+ C C KAF+ + +L
Sbjct: 3 SGSSGTGEKPYECNQCGKAFSVRSSL 28
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 42
Score = 48.3 bits (116), Expect = 6e-09
Identities = 17/70 (24%), Positives = 23/70 (32%), Gaps = 31/70 (44%)
Query: 37 HMRTHTGDKPFRCTICQKAFTTKGNLKLIPNAVFNVAGMPKHLCHVCHKNFSSSSALQIH 96
+ G+KP+RC C KA FS +L +H
Sbjct: 2 SSGSSGGEKPYRCDQCGKA-------------------------------FSQKGSLIVH 30
Query: 97 MRTHTGDKPF 106
+R HTG P
Sbjct: 31 IRVHTGSGPS 40
Score = 42.6 bits (101), Expect = 9e-07
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 96 HMRTHTGDKPFRCTICQKAFTTKGNLKV 123
+ G+KP+RC C KAF+ KG+L V
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIV 29
Score = 41.0 bits (97), Expect = 4e-06
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 21 CHVCHKNFSSSSALQIHMRTHTGDKPF 47
C C K FS +L +H+R HTG P
Sbjct: 14 CDQCGKAFSQKGSLIVHIRVHTGSGPS 40
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 48.3 bits (116), Expect = 6e-09
Identities = 17/73 (23%), Positives = 26/73 (35%), Gaps = 31/73 (42%)
Query: 37 HMRTHTGDKPFRCTICQKAFTTKGNLKLIPNAVFNVAGMPKHLCHVCHKNFSSSSALQIH 96
+ TG+KP+ C +C KAF + + L H
Sbjct: 3 SGSSGTGEKPYECKVCSKAF-------------------------------TQKAHLAQH 31
Query: 97 MRTHTGDKPFRCT 109
+THTG+KP +
Sbjct: 32 QKTHTGEKPSGPS 44
Score = 42.1 bits (100), Expect = 1e-06
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 21 CHVCHKNFSSSSALQIHMRTHTGDKPFRCT 50
C VC K F+ + L H +THTG+KP +
Sbjct: 15 CKVCSKAFTQKAHLAQHQKTHTGEKPSGPS 44
Score = 39.8 bits (94), Expect = 9e-06
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 96 HMRTHTGDKPFRCTICQKAFTTKGNL 121
+ TG+KP+ C +C KAFT K +L
Sbjct: 3 SGSSGTGEKPYECKVCSKAFTQKAHL 28
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 48.3 bits (116), Expect = 7e-09
Identities = 19/72 (26%), Positives = 25/72 (34%), Gaps = 31/72 (43%)
Query: 37 HMRTHTGDKPFRCTICQKAFTTKGNLKLIPNAVFNVAGMPKHLCHVCHKNFSSSSALQIH 96
+ TG+KP+RC C KAFT + N L H
Sbjct: 3 SGSSGTGEKPYRCAECGKAFTDRSN-------------------------------LFTH 31
Query: 97 MRTHTGDKPFRC 108
+ HTG+KP
Sbjct: 32 QKIHTGEKPSGP 43
Score = 41.7 bits (99), Expect = 2e-06
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 96 HMRTHTGDKPFRCTICQKAFTTKGNL 121
+ TG+KP+RC C KAFT + NL
Sbjct: 3 SGSSGTGEKPYRCAECGKAFTDRSNL 28
Score = 41.0 bits (97), Expect = 4e-06
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 21 CHVCHKNFSSSSALQIHMRTHTGDKPFRC 49
C C K F+ S L H + HTG+KP
Sbjct: 15 CAECGKAFTDRSNLFTHQKIHTGEKPSGP 43
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 48.3 bits (116), Expect = 7e-09
Identities = 16/73 (21%), Positives = 22/73 (30%), Gaps = 31/73 (42%)
Query: 37 HMRTHTGDKPFRCTICQKAFTTKGNLKLIPNAVFNVAGMPKHLCHVCHKNFSSSSALQIH 96
+ TG+KP+ C C KAF + S L H
Sbjct: 3 SGSSGTGEKPYICAECGKAF-------------------------------TIRSNLIKH 31
Query: 97 MRTHTGDKPFRCT 109
+ HT KP +
Sbjct: 32 QKIHTKQKPSGPS 44
Score = 41.0 bits (97), Expect = 3e-06
Identities = 11/30 (36%), Positives = 14/30 (46%)
Query: 21 CHVCHKNFSSSSALQIHMRTHTGDKPFRCT 50
C C K F+ S L H + HT KP +
Sbjct: 15 CAECGKAFTIRSNLIKHQKIHTKQKPSGPS 44
Score = 41.0 bits (97), Expect = 4e-06
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 96 HMRTHTGDKPFRCTICQKAFTTKGNL 121
+ TG+KP+ C C KAFT + NL
Sbjct: 3 SGSSGTGEKPYICAECGKAFTIRSNL 28
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.9 bits (115), Expect = 8e-09
Identities = 16/73 (21%), Positives = 24/73 (32%), Gaps = 31/73 (42%)
Query: 37 HMRTHTGDKPFRCTICQKAFTTKGNLKLIPNAVFNVAGMPKHLCHVCHKNFSSSSALQIH 96
+ TG++ + C+ C KAF K S L +H
Sbjct: 3 SGSSGTGERHYECSECGKAFIQK-------------------------------STLSMH 31
Query: 97 MRTHTGDKPFRCT 109
R H G+KP +
Sbjct: 32 QRIHRGEKPSGPS 44
Score = 41.4 bits (98), Expect = 3e-06
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 21 CHVCHKNFSSSSALQIHMRTHTGDKPFRCT 50
C C K F S L +H R H G+KP +
Sbjct: 15 CSECGKAFIQKSTLSMHQRIHRGEKPSGPS 44
Score = 39.8 bits (94), Expect = 9e-06
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 96 HMRTHTGDKPFRCTICQKAFTTKGNLKV 123
+ TG++ + C+ C KAF K L +
Sbjct: 3 SGSSGTGERHYECSECGKAFIQKSTLSM 30
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.9 bits (115), Expect = 8e-09
Identities = 17/73 (23%), Positives = 25/73 (34%), Gaps = 31/73 (42%)
Query: 37 HMRTHTGDKPFRCTICQKAFTTKGNLKLIPNAVFNVAGMPKHLCHVCHKNFSSSSALQIH 96
+ +G+KPF+C C K F + +S L H
Sbjct: 3 SGSSGSGEKPFQCEECGKRF-------------------------------TQNSHLHSH 31
Query: 97 MRTHTGDKPFRCT 109
R HTG+KP +
Sbjct: 32 QRVHTGEKPSGPS 44
Score = 41.8 bits (99), Expect = 2e-06
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 21 CHVCHKNFSSSSALQIHMRTHTGDKPFRCT 50
C C K F+ +S L H R HTG+KP +
Sbjct: 15 CEECGKRFTQNSHLHSHQRVHTGEKPSGPS 44
Score = 38.7 bits (91), Expect = 3e-05
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 96 HMRTHTGDKPFRCTICQKAFTTKGNL 121
+ +G+KPF+C C K FT +L
Sbjct: 3 SGSSGSGEKPFQCEECGKRFTQNSHL 28
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.9 bits (115), Expect = 9e-09
Identities = 17/73 (23%), Positives = 23/73 (31%), Gaps = 31/73 (42%)
Query: 37 HMRTHTGDKPFRCTICQKAFTTKGNLKLIPNAVFNVAGMPKHLCHVCHKNFSSSSALQIH 96
+ TG+KP+ C C K+F S L H
Sbjct: 3 SGSSGTGEKPYICNECGKSF-------------------------------IQKSHLNRH 31
Query: 97 MRTHTGDKPFRCT 109
R HTG+KP +
Sbjct: 32 RRIHTGEKPSGPS 44
Score = 42.5 bits (101), Expect = 9e-07
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 21 CHVCHKNFSSSSALQIHMRTHTGDKPFRCT 50
C+ C K+F S L H R HTG+KP +
Sbjct: 15 CNECGKSFIQKSHLNRHRRIHTGEKPSGPS 44
Score = 38.6 bits (91), Expect = 3e-05
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 96 HMRTHTGDKPFRCTICQKAFTTKGNL 121
+ TG+KP+ C C K+F K +L
Sbjct: 3 SGSSGTGEKPYICNECGKSFIQKSHL 28
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.9 bits (115), Expect = 9e-09
Identities = 19/74 (25%), Positives = 25/74 (33%), Gaps = 31/74 (41%)
Query: 36 IHMRTHTGDKPFRCTICQKAFTTKGNLKLIPNAVFNVAGMPKHLCHVCHKNFSSSSALQI 95
+ TG KP++C C KAF S +S L
Sbjct: 2 SSGSSGTGGKPYQCNECGKAF-------------------------------SQTSKLAR 30
Query: 96 HMRTHTGDKPFRCT 109
H R HTG+KP +
Sbjct: 31 HQRVHTGEKPSGPS 44
Score = 41.8 bits (99), Expect = 2e-06
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 21 CHVCHKNFSSSSALQIHMRTHTGDKPFRCT 50
C+ C K FS +S L H R HTG+KP +
Sbjct: 15 CNECGKAFSQTSKLARHQRVHTGEKPSGPS 44
Score = 37.9 bits (89), Expect = 5e-05
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 95 IHMRTHTGDKPFRCTICQKAFTTKGNL 121
+ TG KP++C C KAF+ L
Sbjct: 2 SSGSSGTGGKPYQCNECGKAFSQTSKL 28
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.9 bits (115), Expect = 1e-08
Identities = 18/72 (25%), Positives = 26/72 (36%), Gaps = 31/72 (43%)
Query: 37 HMRTHTGDKPFRCTICQKAFTTKGNLKLIPNAVFNVAGMPKHLCHVCHKNFSSSSALQIH 96
+ TG++P+ CT+C KAFT + S L H
Sbjct: 3 SGSSGTGERPYICTVCGKAFTDR-------------------------------SNLIKH 31
Query: 97 MRTHTGDKPFRC 108
+ HTG+KP
Sbjct: 32 QKIHTGEKPSGP 43
Score = 41.7 bits (99), Expect = 2e-06
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 21 CHVCHKNFSSSSALQIHMRTHTGDKPFRC 49
C VC K F+ S L H + HTG+KP
Sbjct: 15 CTVCGKAFTDRSNLIKHQKIHTGEKPSGP 43
Score = 41.3 bits (98), Expect = 3e-06
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 96 HMRTHTGDKPFRCTICQKAFTTKGNL 121
+ TG++P+ CT+C KAFT + NL
Sbjct: 3 SGSSGTGERPYICTVCGKAFTDRSNL 28
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 47.9 bits (115), Expect = 1e-08
Identities = 16/73 (21%), Positives = 24/73 (32%), Gaps = 31/73 (42%)
Query: 37 HMRTHTGDKPFRCTICQKAFTTKGNLKLIPNAVFNVAGMPKHLCHVCHKNFSSSSALQIH 96
+ TG++P +C C K+F S+ L H
Sbjct: 3 SGSSGTGERPHKCNECGKSF-------------------------------IQSAHLIQH 31
Query: 97 MRTHTGDKPFRCT 109
R HTG+KP +
Sbjct: 32 QRIHTGEKPSGPS 44
Score = 41.7 bits (99), Expect = 2e-06
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 21 CHVCHKNFSSSSALQIHMRTHTGDKPFRCT 50
C+ C K+F S+ L H R HTG+KP +
Sbjct: 15 CNECGKSFIQSAHLIQHQRIHTGEKPSGPS 44
Score = 38.3 bits (90), Expect = 4e-05
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 96 HMRTHTGDKPFRCTICQKAFTTKGNL 121
+ TG++P +C C K+F +L
Sbjct: 3 SGSSGTGERPHKCNECGKSFIQSAHL 28
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.5 bits (114), Expect = 1e-08
Identities = 17/73 (23%), Positives = 24/73 (32%), Gaps = 31/73 (42%)
Query: 37 HMRTHTGDKPFRCTICQKAFTTKGNLKLIPNAVFNVAGMPKHLCHVCHKNFSSSSALQIH 96
+ +G+KP+ C C KAF S+ L H
Sbjct: 3 SGSSGSGEKPYVCDYCGKAF-------------------------------GLSAELVRH 31
Query: 97 MRTHTGDKPFRCT 109
R HTG+KP +
Sbjct: 32 QRIHTGEKPSGPS 44
Score = 42.1 bits (100), Expect = 1e-06
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 21 CHVCHKNFSSSSALQIHMRTHTGDKPFRCT 50
C C K F S+ L H R HTG+KP +
Sbjct: 15 CDYCGKAFGLSAELVRHQRIHTGEKPSGPS 44
Score = 37.5 bits (88), Expect = 7e-05
Identities = 9/26 (34%), Positives = 13/26 (50%)
Query: 96 HMRTHTGDKPFRCTICQKAFTTKGNL 121
+ +G+KP+ C C KAF L
Sbjct: 3 SGSSGSGEKPYVCDYCGKAFGLSAEL 28
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2ysv_A
Length = 46
Score = 47.5 bits (114), Expect = 1e-08
Identities = 18/73 (24%), Positives = 25/73 (34%), Gaps = 31/73 (42%)
Query: 37 HMRTHTGDKPFRCTICQKAFTTKGNLKLIPNAVFNVAGMPKHLCHVCHKNFSSSSALQIH 96
+ TG+KP+ C C KAF S ++ L H
Sbjct: 3 SGSSGTGEKPYECKECGKAF-------------------------------SQTTHLIQH 31
Query: 97 MRTHTGDKPFRCT 109
R HTG+KP +
Sbjct: 32 QRVHTGEKPSGPS 44
Score = 41.3 bits (98), Expect = 3e-06
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 21 CHVCHKNFSSSSALQIHMRTHTGDKPFRCT 50
C C K FS ++ L H R HTG+KP +
Sbjct: 15 CKECGKAFSQTTHLIQHQRVHTGEKPSGPS 44
Score = 38.3 bits (90), Expect = 4e-05
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 96 HMRTHTGDKPFRCTICQKAFTTKGNL 121
+ TG+KP+ C C KAF+ +L
Sbjct: 3 SGSSGTGEKPYECKECGKAFSQTTHL 28
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Length = 46
Score = 47.6 bits (114), Expect = 1e-08
Identities = 16/73 (21%), Positives = 24/73 (32%), Gaps = 31/73 (42%)
Query: 37 HMRTHTGDKPFRCTICQKAFTTKGNLKLIPNAVFNVAGMPKHLCHVCHKNFSSSSALQIH 96
+ TG+KP+ C C K+F +S L H
Sbjct: 3 SGSSGTGEKPYNCKECGKSF-------------------------------RWASCLLKH 31
Query: 97 MRTHTGDKPFRCT 109
R H+G+KP +
Sbjct: 32 QRVHSGEKPSGPS 44
Score = 42.2 bits (100), Expect = 1e-06
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 21 CHVCHKNFSSSSALQIHMRTHTGDKPFRCT 50
C C K+F +S L H R H+G+KP +
Sbjct: 15 CKECGKSFRWASCLLKHQRVHSGEKPSGPS 44
Score = 37.2 bits (87), Expect = 9e-05
Identities = 9/26 (34%), Positives = 13/26 (50%)
Query: 96 HMRTHTGDKPFRCTICQKAFTTKGNL 121
+ TG+KP+ C C K+F L
Sbjct: 3 SGSSGTGEKPYNCKECGKSFRWASCL 28
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.5 bits (114), Expect = 1e-08
Identities = 19/73 (26%), Positives = 24/73 (32%), Gaps = 31/73 (42%)
Query: 37 HMRTHTGDKPFRCTICQKAFTTKGNLKLIPNAVFNVAGMPKHLCHVCHKNFSSSSALQIH 96
+ TG+KP+ C C KAF S LQ H
Sbjct: 3 SGSSGTGEKPYNCEECGKAF-------------------------------IHDSQLQEH 31
Query: 97 MRTHTGDKPFRCT 109
R HTG+KP +
Sbjct: 32 QRIHTGEKPSGPS 44
Score = 42.1 bits (100), Expect = 1e-06
Identities = 14/30 (46%), Positives = 16/30 (53%)
Query: 21 CHVCHKNFSSSSALQIHMRTHTGDKPFRCT 50
C C K F S LQ H R HTG+KP +
Sbjct: 15 CEECGKAFIHDSQLQEHQRIHTGEKPSGPS 44
Score = 37.9 bits (89), Expect = 5e-05
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 96 HMRTHTGDKPFRCTICQKAFTTKGNL 121
+ TG+KP+ C C KAF L
Sbjct: 3 SGSSGTGEKPYNCEECGKAFIHDSQL 28
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.5 bits (114), Expect = 1e-08
Identities = 19/73 (26%), Positives = 26/73 (35%), Gaps = 31/73 (42%)
Query: 37 HMRTHTGDKPFRCTICQKAFTTKGNLKLIPNAVFNVAGMPKHLCHVCHKNFSSSSALQIH 96
+ TG+KP++C C KAF S +S L H
Sbjct: 3 SGSSGTGEKPYKCNECGKAF-------------------------------SQTSKLARH 31
Query: 97 MRTHTGDKPFRCT 109
R HTG+KP +
Sbjct: 32 QRIHTGEKPSGPS 44
Score = 41.7 bits (99), Expect = 2e-06
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 21 CHVCHKNFSSSSALQIHMRTHTGDKPFRCT 50
C+ C K FS +S L H R HTG+KP +
Sbjct: 15 CNECGKAFSQTSKLARHQRIHTGEKPSGPS 44
Score = 37.5 bits (88), Expect = 6e-05
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 96 HMRTHTGDKPFRCTICQKAFTTKGNL 121
+ TG+KP++C C KAF+ L
Sbjct: 3 SGSSGTGEKPYKCNECGKAFSQTSKL 28
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.5 bits (114), Expect = 1e-08
Identities = 18/72 (25%), Positives = 22/72 (30%), Gaps = 31/72 (43%)
Query: 37 HMRTHTGDKPFRCTICQKAFTTKGNLKLIPNAVFNVAGMPKHLCHVCHKNFSSSSALQIH 96
+ TG KP+ C C KAF S S+L H
Sbjct: 3 SGSSGTGVKPYMCNECGKAF-------------------------------SVYSSLTTH 31
Query: 97 MRTHTGDKPFRC 108
HTG+KP
Sbjct: 32 QVIHTGEKPSGP 43
Score = 42.1 bits (100), Expect = 1e-06
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 21 CHVCHKNFSSSSALQIHMRTHTGDKPFRC 49
C+ C K FS S+L H HTG+KP
Sbjct: 15 CNECGKAFSVYSSLTTHQVIHTGEKPSGP 43
Score = 38.3 bits (90), Expect = 4e-05
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 96 HMRTHTGDKPFRCTICQKAFTTKGNL 121
+ TG KP+ C C KAF+ +L
Sbjct: 3 SGSSGTGVKPYMCNECGKAFSVYSSL 28
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.5 bits (114), Expect = 1e-08
Identities = 15/73 (20%), Positives = 24/73 (32%), Gaps = 31/73 (42%)
Query: 37 HMRTHTGDKPFRCTICQKAFTTKGNLKLIPNAVFNVAGMPKHLCHVCHKNFSSSSALQIH 96
+ +G+KP++C+ C KAF + L H
Sbjct: 3 SGSSGSGEKPYKCSECGKAF-------------------------------HRHTHLNEH 31
Query: 97 MRTHTGDKPFRCT 109
R HTG +P +
Sbjct: 32 RRIHTGYRPSGPS 44
Score = 40.6 bits (96), Expect = 6e-06
Identities = 11/30 (36%), Positives = 14/30 (46%)
Query: 21 CHVCHKNFSSSSALQIHMRTHTGDKPFRCT 50
C C K F + L H R HTG +P +
Sbjct: 15 CSECGKAFHRHTHLNEHRRIHTGYRPSGPS 44
Score = 37.9 bits (89), Expect = 5e-05
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 96 HMRTHTGDKPFRCTICQKAFTTKGNL 121
+ +G+KP++C+ C KAF +L
Sbjct: 3 SGSSGSGEKPYKCSECGKAFHRHTHL 28
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 47.1 bits (113), Expect = 2e-08
Identities = 13/72 (18%), Positives = 18/72 (25%), Gaps = 31/72 (43%)
Query: 37 HMRTHTGDKPFRCTICQKAFTTKGNLKLIPNAVFNVAGMPKHLCHVCHKNFSSSSALQIH 96
+ TG+ P+ C C K F S L H
Sbjct: 3 SGSSGTGENPYECCECGKVF-------------------------------SRKDQLVSH 31
Query: 97 MRTHTGDKPFRC 108
+TH+G
Sbjct: 32 QKTHSGQSGPSS 43
Score = 42.5 bits (101), Expect = 1e-06
Identities = 10/29 (34%), Positives = 12/29 (41%)
Query: 21 CHVCHKNFSSSSALQIHMRTHTGDKPFRC 49
C C K FS L H +TH+G
Sbjct: 15 CCECGKVFSRKDQLVSHQKTHSGQSGPSS 43
Score = 39.0 bits (92), Expect = 2e-05
Identities = 9/26 (34%), Positives = 13/26 (50%)
Query: 96 HMRTHTGDKPFRCTICQKAFTTKGNL 121
+ TG+ P+ C C K F+ K L
Sbjct: 3 SGSSGTGENPYECCECGKVFSRKDQL 28
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.2 bits (113), Expect = 2e-08
Identities = 16/73 (21%), Positives = 24/73 (32%), Gaps = 31/73 (42%)
Query: 37 HMRTHTGDKPFRCTICQKAFTTKGNLKLIPNAVFNVAGMPKHLCHVCHKNFSSSSALQIH 96
+ TG+KP++C C KAF +S+ H
Sbjct: 3 SGSSGTGEKPYKCMECGKAF-------------------------------GDNSSCTQH 31
Query: 97 MRTHTGDKPFRCT 109
R HTG +P +
Sbjct: 32 QRLHTGQRPSGPS 44
Score = 41.4 bits (98), Expect = 2e-06
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 21 CHVCHKNFSSSSALQIHMRTHTGDKPFRCT 50
C C K F +S+ H R HTG +P +
Sbjct: 15 CMECGKAFGDNSSCTQHQRLHTGQRPSGPS 44
Score = 36.8 bits (86), Expect = 1e-04
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 96 HMRTHTGDKPFRCTICQKAFTTKGNL 121
+ TG+KP++C C KAF +
Sbjct: 3 SGSSGTGEKPYKCMECGKAFGDNSSC 28
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 47.1 bits (113), Expect = 2e-08
Identities = 18/73 (24%), Positives = 25/73 (34%), Gaps = 31/73 (42%)
Query: 37 HMRTHTGDKPFRCTICQKAFTTKGNLKLIPNAVFNVAGMPKHLCHVCHKNFSSSSALQIH 96
+ TG+KP+RC C KAF + + L H
Sbjct: 3 SGSSGTGEKPYRCGECGKAF-------------------------------AQKANLTQH 31
Query: 97 MRTHTGDKPFRCT 109
R HTG+KP +
Sbjct: 32 QRIHTGEKPSGPS 44
Score = 40.6 bits (96), Expect = 5e-06
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 21 CHVCHKNFSSSSALQIHMRTHTGDKPFRCT 50
C C K F+ + L H R HTG+KP +
Sbjct: 15 CGECGKAFAQKANLTQHQRIHTGEKPSGPS 44
Score = 40.2 bits (95), Expect = 8e-06
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 96 HMRTHTGDKPFRCTICQKAFTTKGNL 121
+ TG+KP+RC C KAF K NL
Sbjct: 3 SGSSGTGEKPYRCGECGKAFAQKANL 28
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 46.8 bits (112), Expect = 2e-08
Identities = 16/73 (21%), Positives = 24/73 (32%), Gaps = 31/73 (42%)
Query: 37 HMRTHTGDKPFRCTICQKAFTTKGNLKLIPNAVFNVAGMPKHLCHVCHKNFSSSSALQIH 96
+ G+KP++C+ C K+F S S L H
Sbjct: 3 SGSSGEGEKPYQCSECGKSF-------------------------------SGSYRLTQH 31
Query: 97 MRTHTGDKPFRCT 109
THT +KP +
Sbjct: 32 WITHTREKPSGPS 44
Score = 42.9 bits (102), Expect = 6e-07
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 21 CHVCHKNFSSSSALQIHMRTHTGDKPFRCT 50
C C K+FS S L H THT +KP +
Sbjct: 15 CSECGKSFSGSYRLTQHWITHTREKPSGPS 44
Score = 37.5 bits (88), Expect = 6e-05
Identities = 8/26 (30%), Positives = 15/26 (57%)
Query: 96 HMRTHTGDKPFRCTICQKAFTTKGNL 121
+ G+KP++C+ C K+F+ L
Sbjct: 3 SGSSGEGEKPYQCSECGKSFSGSYRL 28
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 46.7 bits (112), Expect = 2e-08
Identities = 17/73 (23%), Positives = 24/73 (32%), Gaps = 31/73 (42%)
Query: 37 HMRTHTGDKPFRCTICQKAFTTKGNLKLIPNAVFNVAGMPKHLCHVCHKNFSSSSALQIH 96
+ TG+KP++C C K F +S L H
Sbjct: 3 SGSSGTGEKPYKCNECGKVF-------------------------------RHNSYLSRH 31
Query: 97 MRTHTGDKPFRCT 109
R HTG+KP +
Sbjct: 32 QRIHTGEKPSGPS 44
Score = 42.1 bits (100), Expect = 1e-06
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 21 CHVCHKNFSSSSALQIHMRTHTGDKPFRCT 50
C+ C K F +S L H R HTG+KP +
Sbjct: 15 CNECGKVFRHNSYLSRHQRIHTGEKPSGPS 44
Score = 37.9 bits (89), Expect = 5e-05
Identities = 9/26 (34%), Positives = 13/26 (50%)
Query: 96 HMRTHTGDKPFRCTICQKAFTTKGNL 121
+ TG+KP++C C K F L
Sbjct: 3 SGSSGTGEKPYKCNECGKVFRHNSYL 28
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 46.7 bits (112), Expect = 2e-08
Identities = 17/73 (23%), Positives = 25/73 (34%), Gaps = 31/73 (42%)
Query: 37 HMRTHTGDKPFRCTICQKAFTTKGNLKLIPNAVFNVAGMPKHLCHVCHKNFSSSSALQIH 96
+ +G+KPF+C C KAF + L H
Sbjct: 3 SGSSGSGEKPFKCKECGKAF-------------------------------RQNIHLASH 31
Query: 97 MRTHTGDKPFRCT 109
+R HTG+KP +
Sbjct: 32 LRIHTGEKPSGPS 44
Score = 41.7 bits (99), Expect = 2e-06
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 21 CHVCHKNFSSSSALQIHMRTHTGDKPFRCT 50
C C K F + L H+R HTG+KP +
Sbjct: 15 CKECGKAFRQNIHLASHLRIHTGEKPSGPS 44
Score = 37.5 bits (88), Expect = 8e-05
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 96 HMRTHTGDKPFRCTICQKAFTTKGNL 121
+ +G+KPF+C C KAF +L
Sbjct: 3 SGSSGSGEKPFKCKECGKAFRQNIHL 28
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 46.7 bits (112), Expect = 2e-08
Identities = 17/73 (23%), Positives = 24/73 (32%), Gaps = 31/73 (42%)
Query: 37 HMRTHTGDKPFRCTICQKAFTTKGNLKLIPNAVFNVAGMPKHLCHVCHKNFSSSSALQIH 96
+ TG+KP++C C KAF + S L H
Sbjct: 3 SGSSGTGEKPYKCNECGKAF-------------------------------RAHSNLTTH 31
Query: 97 MRTHTGDKPFRCT 109
HTG+KP +
Sbjct: 32 QVIHTGEKPSGPS 44
Score = 41.3 bits (98), Expect = 2e-06
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 21 CHVCHKNFSSSSALQIHMRTHTGDKPFRCT 50
C+ C K F + S L H HTG+KP +
Sbjct: 15 CNECGKAFRAHSNLTTHQVIHTGEKPSGPS 44
Score = 39.0 bits (92), Expect = 2e-05
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 96 HMRTHTGDKPFRCTICQKAFTTKGNL 121
+ TG+KP++C C KAF NL
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRAHSNL 28
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 46.7 bits (112), Expect = 3e-08
Identities = 16/73 (21%), Positives = 24/73 (32%), Gaps = 31/73 (42%)
Query: 37 HMRTHTGDKPFRCTICQKAFTTKGNLKLIPNAVFNVAGMPKHLCHVCHKNFSSSSALQIH 96
+ TG+KPF+C C K++ + L H
Sbjct: 3 SGSSGTGEKPFKCGECGKSY-------------------------------NQRVHLTQH 31
Query: 97 MRTHTGDKPFRCT 109
R HTG+KP +
Sbjct: 32 QRVHTGEKPSGPS 44
Score = 41.0 bits (97), Expect = 4e-06
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 21 CHVCHKNFSSSSALQIHMRTHTGDKPFRCT 50
C C K+++ L H R HTG+KP +
Sbjct: 15 CGECGKSYNQRVHLTQHQRVHTGEKPSGPS 44
Score = 38.7 bits (91), Expect = 2e-05
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 96 HMRTHTGDKPFRCTICQKAFTTKGNL 121
+ TG+KPF+C C K++ + +L
Sbjct: 3 SGSSGTGEKPFKCGECGKSYNQRVHL 28
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 46.3 bits (111), Expect = 3e-08
Identities = 16/73 (21%), Positives = 23/73 (31%), Gaps = 31/73 (42%)
Query: 37 HMRTHTGDKPFRCTICQKAFTTKGNLKLIPNAVFNVAGMPKHLCHVCHKNFSSSSALQIH 96
+ TG+KP++C C K F +S L H
Sbjct: 3 SGSSGTGEKPYKCHECGKVF-------------------------------RRNSHLARH 31
Query: 97 MRTHTGDKPFRCT 109
HTG+KP +
Sbjct: 32 QLIHTGEKPSGPS 44
Score = 41.7 bits (99), Expect = 2e-06
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 21 CHVCHKNFSSSSALQIHMRTHTGDKPFRCT 50
CH C K F +S L H HTG+KP +
Sbjct: 15 CHECGKVFRRNSHLARHQLIHTGEKPSGPS 44
Score = 37.1 bits (87), Expect = 1e-04
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 96 HMRTHTGDKPFRCTICQKAFTTKGNL 121
+ TG+KP++C C K F +L
Sbjct: 3 SGSSGTGEKPYKCHECGKVFRRNSHL 28
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 46.4 bits (111), Expect = 3e-08
Identities = 16/73 (21%), Positives = 25/73 (34%), Gaps = 31/73 (42%)
Query: 37 HMRTHTGDKPFRCTICQKAFTTKGNLKLIPNAVFNVAGMPKHLCHVCHKNFSSSSALQIH 96
+ TG+KP++C +C KAF SS L H
Sbjct: 3 SGSSGTGEKPYKCQVCGKAF-------------------------------RVSSHLVQH 31
Query: 97 MRTHTGDKPFRCT 109
H+G++P +
Sbjct: 32 HSVHSGERPSGPS 44
Score = 41.3 bits (98), Expect = 2e-06
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 21 CHVCHKNFSSSSALQIHMRTHTGDKPFRCT 50
C VC K F SS L H H+G++P +
Sbjct: 15 CQVCGKAFRVSSHLVQHHSVHSGERPSGPS 44
Score = 37.1 bits (87), Expect = 9e-05
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 96 HMRTHTGDKPFRCTICQKAFTTKGNL 121
+ TG+KP++C +C KAF +L
Sbjct: 3 SGSSGTGEKPYKCQVCGKAFRVSSHL 28
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Length = 46
Score = 46.4 bits (111), Expect = 3e-08
Identities = 16/73 (21%), Positives = 24/73 (32%), Gaps = 31/73 (42%)
Query: 37 HMRTHTGDKPFRCTICQKAFTTKGNLKLIPNAVFNVAGMPKHLCHVCHKNFSSSSALQIH 96
+ TG+K ++C C K F S +S L H
Sbjct: 3 SGSSGTGEKRYKCNECGKVF-------------------------------SRNSQLSQH 31
Query: 97 MRTHTGDKPFRCT 109
+ HTG+KP +
Sbjct: 32 QKIHTGEKPSGPS 44
Score = 41.7 bits (99), Expect = 2e-06
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 21 CHVCHKNFSSSSALQIHMRTHTGDKPFRCT 50
C+ C K FS +S L H + HTG+KP +
Sbjct: 15 CNECGKVFSRNSQLSQHQKIHTGEKPSGPS 44
Score = 36.7 bits (86), Expect = 1e-04
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 96 HMRTHTGDKPFRCTICQKAFTTKGNL 121
+ TG+K ++C C K F+ L
Sbjct: 3 SGSSGTGEKRYKCNECGKVFSRNSQL 28
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 46.3 bits (111), Expect = 3e-08
Identities = 16/73 (21%), Positives = 25/73 (34%), Gaps = 31/73 (42%)
Query: 37 HMRTHTGDKPFRCTICQKAFTTKGNLKLIPNAVFNVAGMPKHLCHVCHKNFSSSSALQIH 96
+ +G+KP++C C K F + +S L H
Sbjct: 3 SGSSGSGEKPYKCNECGKVF-------------------------------TQNSHLTNH 31
Query: 97 MRTHTGDKPFRCT 109
R HTG+KP +
Sbjct: 32 WRIHTGEKPSGPS 44
Score = 41.3 bits (98), Expect = 2e-06
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 21 CHVCHKNFSSSSALQIHMRTHTGDKPFRCT 50
C+ C K F+ +S L H R HTG+KP +
Sbjct: 15 CNECGKVFTQNSHLTNHWRIHTGEKPSGPS 44
Score = 37.1 bits (87), Expect = 1e-04
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 96 HMRTHTGDKPFRCTICQKAFTTKGNL 121
+ +G+KP++C C K FT +L
Sbjct: 3 SGSSGSGEKPYKCNECGKVFTQNSHL 28
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 46.4 bits (111), Expect = 3e-08
Identities = 13/73 (17%), Positives = 23/73 (31%), Gaps = 31/73 (42%)
Query: 37 HMRTHTGDKPFRCTICQKAFTTKGNLKLIPNAVFNVAGMPKHLCHVCHKNFSSSSALQIH 96
+ +G++PF+C C K F + S L H
Sbjct: 3 SGSSGSGERPFKCNECGKGFGRR-------------------------------SHLAGH 31
Query: 97 MRTHTGDKPFRCT 109
+R H+ +K +
Sbjct: 32 LRLHSREKSSGPS 44
Score = 43.3 bits (103), Expect = 5e-07
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 21 CHVCHKNFSSSSALQIHMRTHTGDKPFRCT 50
C+ C K F S L H+R H+ +K +
Sbjct: 15 CNECGKGFGRRSHLAGHLRLHSREKSSGPS 44
Score = 37.1 bits (87), Expect = 9e-05
Identities = 8/26 (30%), Positives = 15/26 (57%)
Query: 96 HMRTHTGDKPFRCTICQKAFTTKGNL 121
+ +G++PF+C C K F + +L
Sbjct: 3 SGSSGSGERPFKCNECGKGFGRRSHL 28
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 46.3 bits (111), Expect = 4e-08
Identities = 16/73 (21%), Positives = 24/73 (32%), Gaps = 31/73 (42%)
Query: 37 HMRTHTGDKPFRCTICQKAFTTKGNLKLIPNAVFNVAGMPKHLCHVCHKNFSSSSALQIH 96
+ TG+KP++C C K F + +S L H
Sbjct: 3 SGSSGTGEKPYKCNECGKVF-------------------------------TQNSHLVRH 31
Query: 97 MRTHTGDKPFRCT 109
HTG+KP +
Sbjct: 32 RGIHTGEKPSGPS 44
Score = 41.3 bits (98), Expect = 3e-06
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 21 CHVCHKNFSSSSALQIHMRTHTGDKPFRCT 50
C+ C K F+ +S L H HTG+KP +
Sbjct: 15 CNECGKVFTQNSHLVRHRGIHTGEKPSGPS 44
Score = 36.3 bits (85), Expect = 2e-04
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 96 HMRTHTGDKPFRCTICQKAFTTKGNL 121
+ TG+KP++C C K FT +L
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHL 28
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 46.0 bits (110), Expect = 5e-08
Identities = 16/73 (21%), Positives = 24/73 (32%), Gaps = 31/73 (42%)
Query: 37 HMRTHTGDKPFRCTICQKAFTTKGNLKLIPNAVFNVAGMPKHLCHVCHKNFSSSSALQIH 96
+ TG+KP++C C K F + +S L H
Sbjct: 3 SGSSGTGEKPYKCNECGKVF-------------------------------TQNSHLARH 31
Query: 97 MRTHTGDKPFRCT 109
HTG+KP +
Sbjct: 32 RGIHTGEKPSGPS 44
Score = 40.9 bits (97), Expect = 3e-06
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 21 CHVCHKNFSSSSALQIHMRTHTGDKPFRCT 50
C+ C K F+ +S L H HTG+KP +
Sbjct: 15 CNECGKVFTQNSHLARHRGIHTGEKPSGPS 44
Score = 36.3 bits (85), Expect = 2e-04
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 96 HMRTHTGDKPFRCTICQKAFTTKGNL 121
+ TG+KP++C C K FT +L
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHL 28
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 45.6 bits (109), Expect = 6e-08
Identities = 17/73 (23%), Positives = 24/73 (32%), Gaps = 31/73 (42%)
Query: 37 HMRTHTGDKPFRCTICQKAFTTKGNLKLIPNAVFNVAGMPKHLCHVCHKNFSSSSALQIH 96
+ TG+KP++C C K F + +S L H
Sbjct: 3 SGSSGTGEKPYKCNECGKVF-------------------------------TQNSHLARH 31
Query: 97 MRTHTGDKPFRCT 109
R HTG KP +
Sbjct: 32 RRVHTGGKPSGPS 44
Score = 41.4 bits (98), Expect = 3e-06
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 21 CHVCHKNFSSSSALQIHMRTHTGDKPFRCT 50
C+ C K F+ +S L H R HTG KP +
Sbjct: 15 CNECGKVFTQNSHLARHRRVHTGGKPSGPS 44
Score = 36.0 bits (84), Expect = 2e-04
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 96 HMRTHTGDKPFRCTICQKAFTTKGNL 121
+ TG+KP++C C K FT +L
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHL 28
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 45.6 bits (109), Expect = 6e-08
Identities = 14/73 (19%), Positives = 21/73 (28%), Gaps = 31/73 (42%)
Query: 37 HMRTHTGDKPFRCTICQKAFTTKGNLKLIPNAVFNVAGMPKHLCHVCHKNFSSSSALQIH 96
+ G++ RC+ C K F +S H
Sbjct: 3 SGSSGHGERGHRCSDCGKFF-------------------------------LQASNFIQH 31
Query: 97 MRTHTGDKPFRCT 109
R HTG+KP +
Sbjct: 32 RRIHTGEKPSGPS 44
Score = 41.0 bits (97), Expect = 3e-06
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 21 CHVCHKNFSSSSALQIHMRTHTGDKPFRCT 50
C C K F +S H R HTG+KP +
Sbjct: 15 CSDCGKFFLQASNFIQHRRIHTGEKPSGPS 44
Score = 39.4 bits (93), Expect = 1e-05
Identities = 7/26 (26%), Positives = 11/26 (42%)
Query: 96 HMRTHTGDKPFRCTICQKAFTTKGNL 121
+ G++ RC+ C K F N
Sbjct: 3 SGSSGHGERGHRCSDCGKFFLQASNF 28
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 45.6 bits (109), Expect = 7e-08
Identities = 17/73 (23%), Positives = 24/73 (32%), Gaps = 31/73 (42%)
Query: 37 HMRTHTGDKPFRCTICQKAFTTKGNLKLIPNAVFNVAGMPKHLCHVCHKNFSSSSALQIH 96
+ TG+KP++C C K F + +S L H
Sbjct: 3 SGSSGTGEKPYKCNECGKVF-------------------------------TQNSHLANH 31
Query: 97 MRTHTGDKPFRCT 109
R HTG KP +
Sbjct: 32 QRIHTGVKPSGPS 44
Score = 41.0 bits (97), Expect = 4e-06
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 21 CHVCHKNFSSSSALQIHMRTHTGDKPFRCT 50
C+ C K F+ +S L H R HTG KP +
Sbjct: 15 CNECGKVFTQNSHLANHQRIHTGVKPSGPS 44
Score = 37.1 bits (87), Expect = 9e-05
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 96 HMRTHTGDKPFRCTICQKAFTTKGNL 121
+ TG+KP++C C K FT +L
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHL 28
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 45.6 bits (109), Expect = 7e-08
Identities = 16/73 (21%), Positives = 23/73 (31%), Gaps = 31/73 (42%)
Query: 37 HMRTHTGDKPFRCTICQKAFTTKGNLKLIPNAVFNVAGMPKHLCHVCHKNFSSSSALQIH 96
+ TG KP++C C K F + +S L H
Sbjct: 3 SGSSGTGKKPYKCNECGKVF-------------------------------TQNSHLARH 31
Query: 97 MRTHTGDKPFRCT 109
HTG+KP +
Sbjct: 32 RGIHTGEKPSGPS 44
Score = 40.2 bits (95), Expect = 7e-06
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 21 CHVCHKNFSSSSALQIHMRTHTGDKPFRCT 50
C+ C K F+ +S L H HTG+KP +
Sbjct: 15 CNECGKVFTQNSHLARHRGIHTGEKPSGPS 44
Score = 36.3 bits (85), Expect = 2e-04
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 96 HMRTHTGDKPFRCTICQKAFTTKGNL 121
+ TG KP++C C K FT +L
Sbjct: 3 SGSSGTGKKPYKCNECGKVFTQNSHL 28
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 45.6 bits (109), Expect = 8e-08
Identities = 13/72 (18%), Positives = 19/72 (26%), Gaps = 31/72 (43%)
Query: 37 HMRTHTGDKPFRCTICQKAFTTKGNLKLIPNAVFNVAGMPKHLCHVCHKNFSSSSALQIH 96
+ +G KP+ C C+K F L H
Sbjct: 3 SGSSGSGKKPYECKECRKTF-------------------------------IQIGHLNQH 31
Query: 97 MRTHTGDKPFRC 108
R HTG++
Sbjct: 32 KRVHTGERSSGP 43
Score = 41.8 bits (99), Expect = 2e-06
Identities = 10/29 (34%), Positives = 12/29 (41%)
Query: 21 CHVCHKNFSSSSALQIHMRTHTGDKPFRC 49
C C K F L H R HTG++
Sbjct: 15 CKECRKTFIQIGHLNQHKRVHTGERSSGP 43
Score = 37.9 bits (89), Expect = 5e-05
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 96 HMRTHTGDKPFRCTICQKAFTTKGNL 121
+ +G KP+ C C+K F G+L
Sbjct: 3 SGSSGSGKKPYECKECRKTFIQIGHL 28
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET:
ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB:
3znf_A 4znf_A
Length = 57
Score = 45.5 bits (107), Expect = 1e-07
Identities = 20/46 (43%), Positives = 27/46 (58%)
Query: 18 KHLCHVCHKNFSSSSALQIHMRTHTGDKPFRCTICQKAFTTKGNLK 63
K++C C S L+ H+RTHT +P+ CT C +F TKGNL
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLT 46
Score = 45.5 bits (107), Expect = 1e-07
Identities = 20/46 (43%), Positives = 27/46 (58%)
Query: 77 KHLCHVCHKNFSSSSALQIHMRTHTGDKPFRCTICQKAFTTKGNLK 122
K++C C S L+ H+RTHT +P+ CT C +F TKGNL
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLT 46
Score = 30.5 bits (68), Expect = 0.042
Identities = 7/32 (21%), Positives = 14/32 (43%)
Query: 14 AGMPKHLCHVCHKNFSSSSALQIHMRTHTGDK 45
+ + C C+ +F + L HM++ K
Sbjct: 25 TDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK 56
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Length = 42
Score = 44.8 bits (107), Expect = 1e-07
Identities = 13/70 (18%), Positives = 19/70 (27%), Gaps = 31/70 (44%)
Query: 39 RTHTGDKPFRCTICQKAFTTKGNLKLIPNAVFNVAGMPKHLCHVCHKNFSSSSALQIHMR 98
+G+ P+ C+ C KAF + L H R
Sbjct: 3 SGSSGENPYECSECGKAF-------------------------------NRKDQLISHQR 31
Query: 99 THTGDKPFRC 108
TH G+
Sbjct: 32 THAGESGPSS 41
Score = 41.0 bits (97), Expect = 3e-06
Identities = 10/29 (34%), Positives = 12/29 (41%)
Query: 21 CHVCHKNFSSSSALQIHMRTHTGDKPFRC 49
C C K F+ L H RTH G+
Sbjct: 13 CSECGKAFNRKDQLISHQRTHAGESGPSS 41
Score = 37.1 bits (87), Expect = 1e-04
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 98 RTHTGDKPFRCTICQKAFTTKGNL 121
+G+ P+ C+ C KAF K L
Sbjct: 3 SGSSGENPYECSECGKAFNRKDQL 26
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 44.5 bits (106), Expect = 2e-07
Identities = 15/73 (20%), Positives = 21/73 (28%), Gaps = 31/73 (42%)
Query: 37 HMRTHTGDKPFRCTICQKAFTTKGNLKLIPNAVFNVAGMPKHLCHVCHKNFSSSSALQIH 96
+ + K +C C + FT K S L H
Sbjct: 3 SGSSGSSTKSHQCHECGRGFTLK-------------------------------SHLNQH 31
Query: 97 MRTHTGDKPFRCT 109
R HTG+KP +
Sbjct: 32 QRIHTGEKPSGPS 44
Score = 40.2 bits (95), Expect = 8e-06
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 19 HLCHVCHKNFSSSSALQIHMRTHTGDKPFRCT 50
H CH C + F+ S L H R HTG+KP +
Sbjct: 13 HQCHECGRGFTLKSHLNQHQRIHTGEKPSGPS 44
Score = 39.1 bits (92), Expect = 2e-05
Identities = 7/26 (26%), Positives = 12/26 (46%)
Query: 96 HMRTHTGDKPFRCTICQKAFTTKGNL 121
+ + K +C C + FT K +L
Sbjct: 3 SGSSGSSTKSHQCHECGRGFTLKSHL 28
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 44.5 bits (106), Expect = 2e-07
Identities = 17/73 (23%), Positives = 23/73 (31%), Gaps = 31/73 (42%)
Query: 37 HMRTHTGDKPFRCTICQKAFTTKGNLKLIPNAVFNVAGMPKHLCHVCHKNFSSSSALQIH 96
+ +G+K H C C KNF SAL+IH
Sbjct: 3 SGSSGSGEKS-------------------------------HTCDECGKNFCYISALRIH 31
Query: 97 MRTHTGDKPFRCT 109
R H G+K +
Sbjct: 32 QRVHMGEKCSGPS 44
Score = 42.6 bits (101), Expect = 8e-07
Identities = 15/32 (46%), Positives = 18/32 (56%)
Query: 19 HLCHVCHKNFSSSSALQIHMRTHTGDKPFRCT 50
H C C KNF SAL+IH R H G+K +
Sbjct: 13 HTCDECGKNFCYISALRIHQRVHMGEKCSGPS 44
Score = 36.8 bits (86), Expect = 1e-04
Identities = 7/28 (25%), Positives = 12/28 (42%)
Query: 96 HMRTHTGDKPFRCTICQKAFTTKGNLKV 123
+ +G+K C C K F L++
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRI 30
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} PDB: 2yta_A
Length = 42
Score = 44.2 bits (105), Expect = 2e-07
Identities = 12/70 (17%), Positives = 21/70 (30%), Gaps = 31/70 (44%)
Query: 37 HMRTHTGDKPFRCTICQKAFTTKGNLKLIPNAVFNVAGMPKHLCHVCHKNFSSSSALQIH 96
+ G+ P+ C C K+FT +G+L +H
Sbjct: 2 SSGSSGGETPYLCGQCGKSFTQRGSLA-------------------------------VH 30
Query: 97 MRTHTGDKPF 106
R+ + P
Sbjct: 31 QRSCSQSGPS 40
Score = 40.3 bits (95), Expect = 6e-06
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 19 HLCHVCHKNFSSSSALQIHMRTHTGDKPF 47
+LC C K+F+ +L +H R+ + P
Sbjct: 12 YLCGQCGKSFTQRGSLAVHQRSCSQSGPS 40
Score = 38.4 bits (90), Expect = 3e-05
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 96 HMRTHTGDKPFRCTICQKAFTTKGNLKV 123
+ G+ P+ C C K+FT +G+L V
Sbjct: 2 SSGSSGGETPYLCGQCGKSFTQRGSLAV 29
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 47
Score = 44.1 bits (105), Expect = 3e-07
Identities = 17/74 (22%), Positives = 24/74 (32%), Gaps = 32/74 (43%)
Query: 37 HMRTHTGDKPFRCTICQKAFTTKGNLKLIPNAVFNVAGMPKHLCHVCHKNFSSSSALQIH 96
+ TG KP+ C C KAF +++L H
Sbjct: 3 SGSSGTGKKPYECIECGKAF-------------------------------IQNTSLIRH 31
Query: 97 MR-THTGDKPFRCT 109
R HTG+KP +
Sbjct: 32 WRYYHTGEKPSGPS 45
Score = 37.9 bits (89), Expect = 6e-05
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 21 CHVCHKNFSSSSALQIHMR-THTGDKPFRCT 50
C C K F +++L H R HTG+KP +
Sbjct: 15 CIECGKAFIQNTSLIRHWRYYHTGEKPSGPS 45
Score = 37.5 bits (88), Expect = 6e-05
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 96 HMRTHTGDKPFRCTICQKAFTTKGNL 121
+ TG KP+ C C KAF +L
Sbjct: 3 SGSSGTGKKPYECIECGKAFIQNTSL 28
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 48
Score = 44.2 bits (104), Expect = 3e-07
Identities = 10/35 (28%), Positives = 16/35 (45%)
Query: 18 KHLCHVCHKNFSSSSALQIHMRTHTGDKPFRCTIC 52
+ C +C K F L H +H+G+KP+
Sbjct: 12 QVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
Score = 44.2 bits (104), Expect = 3e-07
Identities = 10/35 (28%), Positives = 16/35 (45%)
Query: 77 KHLCHVCHKNFSSSSALQIHMRTHTGDKPFRCTIC 111
+ C +C K F L H +H+G+KP+
Sbjct: 12 QVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
Score = 26.4 bits (58), Expect = 0.82
Identities = 7/25 (28%), Positives = 9/25 (36%)
Query: 98 RTHTGDKPFRCTICQKAFTTKGNLK 122
+ K C IC K F +L
Sbjct: 5 SSGRTRKQVACEICGKIFRDVYHLN 29
>1ej6_B Lambda1; icosahedral, non-equivalence, dsRNA virus, methylase,
methyltransferase, guanylyltransferase, zinc finger,
icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1
PDB: 2cse_V
Length = 1275
Score = 44.8 bits (105), Expect = 3e-06
Identities = 12/72 (16%), Positives = 20/72 (27%)
Query: 29 SSSSALQIHMRTHTGDKPFRCTICQKAFTTKGNLKLIPNAVFNVAGMPKHLCHVCHKNFS 88
S + + + KP I + + + CHVC
Sbjct: 132 ELSRSGNVDNEGGSNQKPMSTRIAEATSAIVSKHPARVGLPPTASSGHGYQCHVCSAVLF 191
Query: 89 SSSALQIHMRTH 100
S L H+ +H
Sbjct: 192 SPLDLDAHVASH 203
Score = 43.3 bits (101), Expect = 1e-05
Identities = 8/29 (27%), Positives = 12/29 (41%)
Query: 13 VAGMPKHLCHVCHKNFSSSSALQIHMRTH 41
+ + CHVC S L H+ +H
Sbjct: 175 ASSGHGYQCHVCSAVLFSPLDLDAHVASH 203
Score = 31.7 bits (71), Expect = 0.082
Identities = 6/44 (13%), Positives = 12/44 (27%)
Query: 80 CHVCHKNFSSSSALQIHMRTHTGDKPFRCTICQKAFTTKGNLKV 123
S A T + ++C +C + +L
Sbjct: 155 AEATSAIVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDA 198
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger,
transcription factor, DNA binding protein; NMR {Mus
musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Length = 37
Score = 39.2 bits (92), Expect = 1e-05
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 37 HMRTHTGDKPFRCTICQKAFT 57
R TG KPF+C C ++F+
Sbjct: 2 STRGSTGIKPFQCPDCDRSFS 22
Score = 39.2 bits (92), Expect = 1e-05
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 96 HMRTHTGDKPFRCTICQKAFT 116
R TG KPF+C C ++F+
Sbjct: 2 STRGSTGIKPFQCPDCDRSFS 22
Score = 32.3 bits (74), Expect = 0.006
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 15 GMPKHLCHVCHKNFSSSSALQIHMRTH 41
G+ C C ++FS S L +H + H
Sbjct: 8 GIKPFQCPDCDRSFSRSDHLALHRKRH 34
>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 38.7 bits (91), Expect = 2e-05
Identities = 9/26 (34%), Positives = 12/26 (46%)
Query: 37 HMRTHTGDKPFRCTICQKAFTTKGNL 62
+ T K + C C KAFT +L
Sbjct: 3 SGSSGTDSKSYNCNECGKAFTRIFHL 28
Score = 38.7 bits (91), Expect = 2e-05
Identities = 9/26 (34%), Positives = 12/26 (46%)
Query: 96 HMRTHTGDKPFRCTICQKAFTTKGNL 121
+ T K + C C KAFT +L
Sbjct: 3 SGSSGTDSKSYNCNECGKAFTRIFHL 28
Score = 29.1 bits (66), Expect = 0.081
Identities = 8/29 (27%), Positives = 11/29 (37%)
Query: 21 CHVCHKNFSSSSALQIHMRTHTGDKPFRC 49
C+ C K F+ L H + HT
Sbjct: 15 CNECGKAFTRIFHLTRHQKIHTRKSGPSS 43
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 41
Score = 38.3 bits (90), Expect = 3e-05
Identities = 12/68 (17%), Positives = 18/68 (26%), Gaps = 31/68 (45%)
Query: 39 RTHTGDKPFRCTICQKAFTTKGNLKLIPNAVFNVAGMPKHLCHVCHKNFSSSSALQIHMR 98
+G + + C C K+F +L +H R
Sbjct: 3 SGSSGQRVYECQECGKSF-------------------------------RQKGSLTLHER 31
Query: 99 THTGDKPF 106
HTG P
Sbjct: 32 IHTGSGPS 39
Score = 37.6 bits (88), Expect = 7e-05
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 21 CHVCHKNFSSSSALQIHMRTHTGDKPF 47
C C K+F +L +H R HTG P
Sbjct: 13 CQECGKSFRQKGSLTLHERIHTGSGPS 39
Score = 34.9 bits (81), Expect = 6e-04
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 98 RTHTGDKPFRCTICQKAFTTKGNL 121
+G + + C C K+F KG+L
Sbjct: 3 SGSSGQRVYECQECGKSFRQKGSL 26
>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens}
SCOP: g.37.1.1 PDB: 1va2_A
Length = 31
Score = 36.4 bits (85), Expect = 2e-04
Identities = 13/22 (59%), Positives = 15/22 (68%)
Query: 24 CHKNFSSSSALQIHMRTHTGDK 45
C K F+ S LQ H RTHTG+K
Sbjct: 10 CGKRFTRSDELQRHKRTHTGEK 31
Score = 36.4 bits (85), Expect = 2e-04
Identities = 13/22 (59%), Positives = 15/22 (68%)
Query: 83 CHKNFSSSSALQIHMRTHTGDK 104
C K F+ S LQ H RTHTG+K
Sbjct: 10 CGKRFTRSDELQRHKRTHTGEK 31
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Length = 129
Score = 38.8 bits (89), Expect = 2e-04
Identities = 20/106 (18%), Positives = 36/106 (33%), Gaps = 23/106 (21%)
Query: 3 GKLIPNAVFNVAGMPKHLCHVCHKNFSSSSALQIHMRTHTGDKPFRCTICQKAFTTKGNL 62
+L P + + K L H + S+ + F C +C F++ +L
Sbjct: 33 HQLTPEQKRLIRAIVKTLIH--NPQLLDESSYLYRLLASKAISQFVCPLCLMPFSSSVSL 90
Query: 63 KLIPNAVFNVAGMPKHL--------CHVCHKNFSSSSALQIHMRTH 100
K +H+ C VC K F+S+ + H+
Sbjct: 91 K-------------QHIRYTEHTKVCPVCKKEFTSTDSALDHVCKK 123
Score = 37.6 bits (86), Expect = 3e-04
Identities = 20/112 (17%), Positives = 42/112 (37%), Gaps = 5/112 (4%)
Query: 14 AGMPKHLCH--VCHKNFSSSSALQIHMRTHTGDKPFRCTICQKAFTTK-GNLKLIPNAVF 70
+G K+L + + + + H T + R + + + +
Sbjct: 8 SGSKKYLSNHKGIFIHVTLEELKRYHQLTPEQKRLIRAIVKTLIHNPQLLDESSYLYRLL 67
Query: 71 NVAGMPKHLCHVCHKNFSSSSALQIHMRTHTGDKPFRCTICQKAFTTKGNLK 122
+ + +C +C FSSS +L+ H+R C +C+K FT+ +
Sbjct: 68 ASKAISQFVCPLCLMPFSSSVSLKQHIRYTE--HTKVCPVCKKEFTSTDSAL 117
>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding
protein; NMR {Homo sapiens}
Length = 37
Score = 36.2 bits (84), Expect = 2e-04
Identities = 12/30 (40%), Positives = 21/30 (70%), Gaps = 2/30 (6%)
Query: 18 KHLCHV--CHKNFSSSSALQIHMRTHTGDK 45
+H+CH+ C K + +S L+ H+R HTG++
Sbjct: 8 QHICHIQGCGKVYGKTSHLRAHLRWHTGER 37
Score = 36.2 bits (84), Expect = 2e-04
Identities = 12/30 (40%), Positives = 21/30 (70%), Gaps = 2/30 (6%)
Query: 77 KHLCHV--CHKNFSSSSALQIHMRTHTGDK 104
+H+CH+ C K + +S L+ H+R HTG++
Sbjct: 8 QHICHIQGCGKVYGKTSHLRAHLRWHTGER 37
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 36.1 bits (84), Expect = 2e-04
Identities = 11/70 (15%), Positives = 19/70 (27%), Gaps = 31/70 (44%)
Query: 39 RTHTGDKPFRCTICQKAFTTKGNLKLIPNAVFNVAGMPKHLCHVCHKNFSSSSALQIHMR 98
+G+KP+ C C++ FS ++ L H +
Sbjct: 3 SGSSGEKPYSCAECKET-------------------------------FSDNNRLVQHQK 31
Query: 99 THTGDKPFRC 108
HT
Sbjct: 32 MHTVKSGPSS 41
Score = 33.8 bits (78), Expect = 0.001
Identities = 7/24 (29%), Positives = 13/24 (54%)
Query: 98 RTHTGDKPFRCTICQKAFTTKGNL 121
+G+KP+ C C++ F+ L
Sbjct: 3 SGSSGEKPYSCAECKETFSDNNRL 26
Score = 33.5 bits (77), Expect = 0.002
Identities = 8/29 (27%), Positives = 12/29 (41%)
Query: 21 CHVCHKNFSSSSALQIHMRTHTGDKPFRC 49
C C + FS ++ L H + HT
Sbjct: 13 CAECKETFSDNNRLVQHQKMHTVKSGPSS 41
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid
binding, KIAA1227 protein, structural genomics; NMR
{Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 107
Score = 37.2 bits (85), Expect = 4e-04
Identities = 15/86 (17%), Positives = 30/86 (34%), Gaps = 6/86 (6%)
Query: 43 GDKPFRCTICQKAFTTKGNLKLIPNAVFNVAGMPKHLCHVCHKNFSSSSALQIHMRTHTG 102
+ ++C +C ++ N A +C C F S Q H +
Sbjct: 13 NKEVYQCRLCNAKLSSLLEQGSHERLCRNAA-----VCPYCSLRFFSPELKQEH-ESKCE 66
Query: 103 DKPFRCTICQKAFTTKGNLKVREIEI 128
K C C + F + ++ ++E+
Sbjct: 67 YKKLTCLECMRTFKSSFSIWRHQVEV 92
Score = 32.6 bits (73), Expect = 0.019
Identities = 16/76 (21%), Positives = 24/76 (31%), Gaps = 6/76 (7%)
Query: 21 CHVCHKNFSSSSALQIHMRTHTGDKPFRCTICQKAFTTKGNLKLIPNAVFNVAGMPKHLC 80
C +C+ SS H R C C F + + + K C
Sbjct: 19 CRLCNAKLSSLLEQGSHERLC--RNAAVCPYCSLRFFSPELKQEHESK----CEYKKLTC 72
Query: 81 HVCHKNFSSSSALQIH 96
C + F SS ++ H
Sbjct: 73 LECMRTFKSSFSIWRH 88
Score = 29.1 bits (64), Expect = 0.25
Identities = 10/43 (23%), Positives = 16/43 (37%), Gaps = 1/43 (2%)
Query: 20 LCHVCHKNFSSSSALQIHMRTHTGDKPFRCTICQKAFTTKGNL 62
+C C F S Q H + K C C + F + ++
Sbjct: 44 VCPYCSLRFFSPELKQEH-ESKCEYKKLTCLECMRTFKSSFSI 85
>3iyl_X VP3; non-enveloped virus, membrane penetration protein, autocleav
myristol group, icosahedral virus; HET: MYR; 3.30A
{Grass carp reovirus} PDB: 3k1q_C 3k1q_B
Length = 1214
Score = 38.6 bits (89), Expect = 4e-04
Identities = 10/23 (43%), Positives = 17/23 (73%)
Query: 18 KHLCHVCHKNFSSSSALQIHMRT 40
++C+VC+ FS+ SAL H+R+
Sbjct: 116 SYVCNVCNARFSTMSALSEHLRS 138
Score = 38.6 bits (89), Expect = 4e-04
Identities = 10/23 (43%), Positives = 17/23 (73%)
Query: 77 KHLCHVCHKNFSSSSALQIHMRT 99
++C+VC+ FS+ SAL H+R+
Sbjct: 116 SYVCNVCNARFSTMSALSEHLRS 138
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A
1are_A
Length = 29
Score = 33.8 bits (78), Expect = 0.001
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 18 KHLCHVCHKNFSSSSALQIHMRTHTGDK 45
+C VC + F+ L+ H R+HT +K
Sbjct: 2 SFVCEVCTRAFARQEHLKRHYRSHTNEK 29
Score = 33.8 bits (78), Expect = 0.001
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 77 KHLCHVCHKNFSSSSALQIHMRTHTGDK 104
+C VC + F+ L+ H R+HT +K
Sbjct: 2 SFVCEVCTRAFARQEHLKRHYRSHTNEK 29
Score = 24.6 bits (54), Expect = 2.9
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 45 KPFRCTICQKAFTTKGNLK 63
+ F C +C +AF + +LK
Sbjct: 1 RSFVCEVCTRAFARQEHLK 19
Score = 24.6 bits (54), Expect = 2.9
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 104 KPFRCTICQKAFTTKGNLK 122
+ F C +C +AF + +LK
Sbjct: 1 RSFVCEVCTRAFARQEHLK 19
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 44
Score = 34.4 bits (79), Expect = 0.001
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 37 HMRTHTGDKPFRCTICQKAFTTKGNL 62
+ G+ PF+C+ C + FT + L
Sbjct: 3 SGSSGAGENPFKCSKCDRVFTQRNYL 28
Score = 34.4 bits (79), Expect = 0.001
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 96 HMRTHTGDKPFRCTICQKAFTTKGNL 121
+ G+ PF+C+ C + FT + L
Sbjct: 3 SGSSGAGENPFKCSKCDRVFTQRNYL 28
Score = 29.4 bits (66), Expect = 0.075
Identities = 8/26 (30%), Positives = 11/26 (42%)
Query: 21 CHVCHKNFSSSSALQIHMRTHTGDKP 46
C C + F+ + L H RTH
Sbjct: 15 CSKCDRVFTQRNYLVQHERTHARKSG 40
>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein,
helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis}
SCOP: g.37.1.4 g.37.1.4
Length = 127
Score = 35.3 bits (80), Expect = 0.002
Identities = 18/85 (21%), Positives = 22/85 (25%), Gaps = 2/85 (2%)
Query: 16 MPKHLCHVCHKNFSSSSALQIHM--RTHTGDKPFRCTICQKAFTTKGNLKLIPNAVFNVA 73
C VC S S H R H I Q + A +
Sbjct: 30 FSDTQCKVCSAVLISESQKLAHYQSRKHANKVRRYMAINQGEDSVPAKKFKAAPAEISDG 89
Query: 74 GMPKHLCHVCHKNFSSSSALQIHMR 98
C VC+ FSS + H
Sbjct: 90 EDRSKCCPVCNMTFSSPVVAESHYI 114
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 35.0 bits (80), Expect = 0.008
Identities = 31/180 (17%), Positives = 50/180 (27%), Gaps = 75/180 (41%)
Query: 5 LI--PNAVFNVAGMPKHLCHVC---HKNFSSSSALQIHMRTHTGDKPFRCTICQKAFTTK 59
L+ V+G P+ L + K + S Q R PF ++
Sbjct: 370 LVNGAKN-LVVSGPPQSLYGLNLTLRKAKAPSGLDQ--SRI-----PFS----ER----- 412
Query: 60 GNLKLIPNAVFNVAGMPKH-----------LCHVCHKNFS-SSSALQIHM-RTHTGDKPF 106
KL + F P H + N S ++ +QI + T G
Sbjct: 413 ---KLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGS--- 466
Query: 107 RCTICQKAFTTKGNLKVREIEINIGSQL-------P---KKAQQ----HI-----GAVEG 147
+L R + +I ++ P + Q HI G G
Sbjct: 467 -------------DL--RVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASG 511
Score = 28.1 bits (62), Expect = 1.8
Identities = 27/153 (17%), Positives = 48/153 (31%), Gaps = 49/153 (32%)
Query: 2 RGKLIPNAVFNVAGMPKHLCHVCHKNFSSSSALQIHMRTHTGDKPFRCTICQKAFTTKGN 61
RG + AV P+ + N+ + + + + + ++ G
Sbjct: 1789 RGMTMQVAV------PRD--ELGRSNYGMIAINPGRVAASFSQEALQ-YVVERVGKRTGW 1839
Query: 62 LKLIPNAVFNVAGMPKHLCHVCHKNFSSSSALQIHMRTHTGDKPFRCTICQKAFTTKGN- 120
L I N +NV +V GD +A T N
Sbjct: 1840 LVEIVN--YNVENQ----QYVA-----------------AGDL--------RALDTVTNV 1868
Query: 121 ---LKVREIEINIGSQLPKKAQQHIGAVEGKSF 150
+K+++I+I +L K + VEG F
Sbjct: 1869 LNFIKLQKIDI---IELQK--SLSLEEVEGHLF 1896
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc
finger, classical zinc finger, transcription; NMR {Homo
sapiens}
Length = 30
Score = 31.6 bits (71), Expect = 0.010
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 16 MPKHLCHVCHKNFSSSSALQIHMRTHTGDK 45
M ++C C + F+ ALQ H+R HTG+K
Sbjct: 1 MKPYVCIHCQRQFADPGALQRHVRIHTGEK 30
Score = 31.6 bits (71), Expect = 0.010
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 75 MPKHLCHVCHKNFSSSSALQIHMRTHTGDK 104
M ++C C + F+ ALQ H+R HTG+K
Sbjct: 1 MKPYVCIHCQRQFADPGALQRHVRIHTGEK 30
Score = 23.9 bits (51), Expect = 5.0
Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 104 KPFRCTICQKAFTTKGNLKVREIEINIGSQ 133
KP+ C CQ+ F G L+ R + I+ G +
Sbjct: 2 KPYVCIHCQRQFADPGALQ-RHVRIHTGEK 30
Score = 23.6 bits (50), Expect = 7.0
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 45 KPFRCTICQKAFTTKGNLK 63
KP+ C CQ+ F G L+
Sbjct: 2 KPYVCIHCQRQFADPGALQ 20
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription;
NMR {Mus musculus} SCOP: g.37.1.1
Length = 35
Score = 31.3 bits (70), Expect = 0.012
Identities = 12/21 (57%), Positives = 14/21 (66%)
Query: 41 HTGDKPFRCTICQKAFTTKGN 61
+G +PF C IC AFTTK N
Sbjct: 2 SSGKRPFVCRICLSAFTTKAN 22
Score = 31.3 bits (70), Expect = 0.012
Identities = 12/21 (57%), Positives = 14/21 (66%)
Query: 100 HTGDKPFRCTICQKAFTTKGN 120
+G +PF C IC AFTTK N
Sbjct: 2 SSGKRPFVCRICLSAFTTKAN 22
>1njq_A Superman protein; zinc-finger, peptide-zinc complex,
beta-BETA-ALFA motif, metal binding protein; NMR
{Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A
Length = 39
Score = 29.7 bits (67), Expect = 0.051
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 18 KHLCHVCHKNFSSSSALQIHMRTH 41
+ C C + F S+ AL HM H
Sbjct: 6 SYTCSFCKREFRSAQALGGHMNVH 29
Score = 29.7 bits (67), Expect = 0.051
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 77 KHLCHVCHKNFSSSSALQIHMRTH 100
+ C C + F S+ AL HM H
Sbjct: 6 SYTCSFCKREFRSAQALGGHMNVH 29
>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif,
transcription regulation, zinc-finger; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 47
Score = 28.7 bits (64), Expect = 0.12
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 24 CHKNFSSSSALQIHMRTHTGDK 45
C K F ++ H++TH D+
Sbjct: 26 CTKTFKRRYNIRSHIQTHLEDR 47
Score = 28.7 bits (64), Expect = 0.12
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 83 CHKNFSSSSALQIHMRTHTGDK 104
C K F ++ H++TH D+
Sbjct: 26 CTKTFKRRYNIRSHIQTHLEDR 47
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 28.3 bits (62), Expect = 0.17
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 21 CHVCHKNFSSSSALQIHMRTHTGDK 45
C C+K F +LQ H+R HT +K
Sbjct: 12 CEYCNKVFKFKHSLQAHLRIHTNEK 36
Score = 28.3 bits (62), Expect = 0.17
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 80 CHVCHKNFSSSSALQIHMRTHTGDK 104
C C+K F +LQ H+R HT +K
Sbjct: 12 CEYCNKVFKFKHSLQAHLRIHTNEK 36
>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers,
4-stranded parallel/anti-parallel beta- sheet,
structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1
Length = 102
Score = 29.4 bits (65), Expect = 0.24
Identities = 13/83 (15%), Positives = 29/83 (34%), Gaps = 2/83 (2%)
Query: 30 SSSALQIHMRTHTGDKPFRCTICQKAFTTKGNLKL-IPNAVFNVAGMPKHLCHVCHKNFS 88
+ + + + + C C + + NV ++C C+
Sbjct: 2 AHHHHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTK 61
Query: 89 SSSALQIH-MRTHTGDKPFRCTI 110
AL H ++ H G++ F+ T+
Sbjct: 62 RYDALSEHNLKYHPGEENFKLTM 84
Score = 25.9 bits (56), Expect = 3.7
Identities = 11/41 (26%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 12 NVAGMPKHLCHVCHKNFSSSSALQIH-MRTHTGDKPFRCTI 51
NV ++C C+ AL H ++ H G++ F+ T+
Sbjct: 44 NVVLNSSYVCVECNFLTKRYDALSEHNLKYHPGEENFKLTM 84
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc
finger, transcription; NMR {Homo sapiens}
Length = 29
Score = 27.4 bits (60), Expect = 0.25
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 20 LCHVCHKNFSSSSALQIHMRTHTGDK 45
C +C K F+ +S+L H+R HTG+K
Sbjct: 4 QCVMCGKAFTQASSLIAHVRQHTGEK 29
Score = 27.4 bits (60), Expect = 0.25
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 79 LCHVCHKNFSSSSALQIHMRTHTGDK 104
C +C K F+ +S+L H+R HTG+K
Sbjct: 4 QCVMCGKAFTQASSLIAHVRQHTGEK 29
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human
papillomavirus, HPV E6 protein, de novo protein; NMR
{Synthetic} SCOP: k.12.1.1
Length = 33
Score = 27.6 bits (61), Expect = 0.30
Identities = 10/31 (32%), Positives = 11/31 (35%)
Query: 18 KHLCHVCHKNFSSSSALQIHMRTHTGDKPFR 48
K C C K F S L H+ H R
Sbjct: 2 KFACPECPKRFMRSDHLSKHITLHELLGEER 32
Score = 27.6 bits (61), Expect = 0.30
Identities = 10/31 (32%), Positives = 11/31 (35%)
Query: 77 KHLCHVCHKNFSSSSALQIHMRTHTGDKPFR 107
K C C K F S L H+ H R
Sbjct: 2 KFACPECPKRFMRSDHLSKHITLHELLGEER 32
>3ray_A PR domain-containing protein 11; structural genomics consortium,
SGC, histone methylation, Zn transcriptional regulation,
chromatin, transcription; 1.73A {Homo sapiens}
Length = 237
Score = 29.4 bits (65), Expect = 0.48
Identities = 8/38 (21%), Positives = 14/38 (36%)
Query: 26 KNFSSSSALQIHMRTHTGDKPFRCTICQKAFTTKGNLK 63
K S S IH G+K + ++ +L+
Sbjct: 188 KRLHSMSQETIHRNLARGEKRLQREKSEQVLDNPEDLR 225
Score = 29.4 bits (65), Expect = 0.48
Identities = 8/38 (21%), Positives = 14/38 (36%)
Query: 85 KNFSSSSALQIHMRTHTGDKPFRCTICQKAFTTKGNLK 122
K S S IH G+K + ++ +L+
Sbjct: 188 KRLHSMSQETIHRNLARGEKRLQREKSEQVLDNPEDLR 225
Score = 27.5 bits (60), Expect = 1.8
Identities = 2/31 (6%), Positives = 8/31 (25%)
Query: 15 GMPKHLCHVCHKNFSSSSALQIHMRTHTGDK 45
G + + + L+ + +
Sbjct: 205 GEKRLQREKSEQVLDNPEDLRGPIHLSVLRQ 235
Score = 27.5 bits (60), Expect = 1.8
Identities = 2/31 (6%), Positives = 8/31 (25%)
Query: 74 GMPKHLCHVCHKNFSSSSALQIHMRTHTGDK 104
G + + + L+ + +
Sbjct: 205 GEKRLQREKSEQVLDNPEDLRGPIHLSVLRQ 235
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human
papillomavirus, HPV E6 protein, de novo protein; NMR
{Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Length = 29
Score = 26.8 bits (59), Expect = 0.50
Identities = 10/28 (35%), Positives = 12/28 (42%)
Query: 18 KHLCHVCHKNFSSSSALQIHMRTHTGDK 45
K C C K F S L +H+ H K
Sbjct: 2 KFACPECPKRFMRSDHLTLHILLHENKK 29
Score = 26.8 bits (59), Expect = 0.50
Identities = 10/28 (35%), Positives = 12/28 (42%)
Query: 77 KHLCHVCHKNFSSSSALQIHMRTHTGDK 104
K C C K F S L +H+ H K
Sbjct: 2 KFACPECPKRFMRSDHLTLHILLHENKK 29
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 45
Score = 26.8 bits (58), Expect = 0.74
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 41 HTGDKPFRCTICQKAFTTKGNL 62
+G+KP+ C +C F K +
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRM 26
Score = 26.8 bits (58), Expect = 0.74
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 100 HTGDKPFRCTICQKAFTTKGNL 121
+G+KP+ C +C F K +
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRM 26
Score = 25.3 bits (54), Expect = 2.7
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 21 CHVCHKNFSSSSALQIHMRTHTG 43
C VC F + H+R+H G
Sbjct: 13 CPVCGLRFKRKDRMSYHVRSHDG 35
Score = 25.3 bits (54), Expect = 2.7
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 80 CHVCHKNFSSSSALQIHMRTHTG 102
C VC F + H+R+H G
Sbjct: 13 CPVCGLRFKRKDRMSYHVRSHDG 35
>1vju_A Coproporphyrinogen III oxidase; structural genomics, PSI, protein
structure initiative, structural genomics of pathogenic
protozoa consortium; 1.40A {Leishmania major} SCOP:
d.248.1.1 PDB: 2qt8_A* 3dwr_A 3dws_A* 3ejo_A 3e8j_A*
Length = 309
Score = 28.7 bits (65), Expect = 0.80
Identities = 6/22 (27%), Positives = 11/22 (50%)
Query: 131 GSQLPKKAQQHIGAVEGKSFQA 152
G LP + + + G +F+A
Sbjct: 76 GKGLPMSSTERHPDIAGCNFEA 97
>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI,
protein structure initiative, center for eukaryotic
structural genomics, CESG; NMR {Homo sapiens} SCOP:
g.37.1.4
Length = 124
Score = 27.7 bits (61), Expect = 1.0
Identities = 9/26 (34%), Positives = 13/26 (50%)
Query: 15 GMPKHLCHVCHKNFSSSSALQIHMRT 40
G H C C + F S+ L+ H R+
Sbjct: 47 GGGLHRCLACARYFIDSTNLKTHFRS 72
Score = 27.7 bits (61), Expect = 1.0
Identities = 9/26 (34%), Positives = 13/26 (50%)
Query: 74 GMPKHLCHVCHKNFSSSSALQIHMRT 99
G H C C + F S+ L+ H R+
Sbjct: 47 GGGLHRCLACARYFIDSTNLKTHFRS 72
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA,
metal-binding, transcription; NMR {Mus musculus}
Length = 28
Score = 25.5 bits (55), Expect = 1.3
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 16 MPKHLCHVCHKNFSSSSALQIHMRTHTG 43
M + C VC K FS ++ H R HTG
Sbjct: 1 MRPYSCSVCGKRFSLKHQMETHYRVHTG 28
Score = 25.5 bits (55), Expect = 1.3
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 75 MPKHLCHVCHKNFSSSSALQIHMRTHTG 102
M + C VC K FS ++ H R HTG
Sbjct: 1 MRPYSCSVCGKRFSLKHQMETHYRVHTG 28
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 25.6 bits (55), Expect = 1.6
Identities = 12/27 (44%), Positives = 14/27 (51%)
Query: 18 KHLCHVCHKNFSSSSALQIHMRTHTGD 44
HLC +C K F S L+ H HT D
Sbjct: 9 THLCDMCGKKFKSKGTLKSHKLLHTAD 35
Score = 25.6 bits (55), Expect = 1.6
Identities = 12/27 (44%), Positives = 14/27 (51%)
Query: 77 KHLCHVCHKNFSSSSALQIHMRTHTGD 103
HLC +C K F S L+ H HT D
Sbjct: 9 THLCDMCGKKFKSKGTLKSHKLLHTAD 35
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 96
Score = 26.8 bits (58), Expect = 1.6
Identities = 10/44 (22%), Positives = 18/44 (40%), Gaps = 9/44 (20%)
Query: 13 VAGMPKHL---------CHVCHKNFSSSSALQIHMRTHTGDKPF 47
+ G+ KH+ CH C K S + ++ H+ + P
Sbjct: 48 IEGLKKHMENCKQEMFTCHHCGKQLRSLAGMKYHVMANHNSLPS 91
Score = 26.8 bits (58), Expect = 1.6
Identities = 10/44 (22%), Positives = 18/44 (40%), Gaps = 9/44 (20%)
Query: 72 VAGMPKHL---------CHVCHKNFSSSSALQIHMRTHTGDKPF 106
+ G+ KH+ CH C K S + ++ H+ + P
Sbjct: 48 IEGLKKHMENCKQEMFTCHHCGKQLRSLAGMKYHVMANHNSLPS 91
Score = 24.4 bits (52), Expect = 9.7
Identities = 8/36 (22%), Positives = 13/36 (36%), Gaps = 1/36 (2%)
Query: 28 FSSSSALQIHMRTHTGDKPFRCTICQKAFTTKGNLK 63
+ L+ HM + F C C K + +K
Sbjct: 45 RKTIEGLKKHMENC-KQEMFTCHHCGKQLRSLAGMK 79
Score = 24.4 bits (52), Expect = 9.7
Identities = 8/36 (22%), Positives = 13/36 (36%), Gaps = 1/36 (2%)
Query: 87 FSSSSALQIHMRTHTGDKPFRCTICQKAFTTKGNLK 122
+ L+ HM + F C C K + +K
Sbjct: 45 RKTIEGLKKHMENC-KQEMFTCHHCGKQLRSLAGMK 79
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB
protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus}
SCOP: g.50.1.1
Length = 134
Score = 26.8 bits (58), Expect = 2.1
Identities = 11/67 (16%), Positives = 20/67 (29%), Gaps = 16/67 (23%)
Query: 48 RCTICQKAFTTKGNLKLIPNAVFNVAGMPKHLCHVCHKNFSSSSALQIHMRTHTGDKPFR 107
RC +C + G+ +C C KN + + + +
Sbjct: 57 RCILCGEQLGMLGS--------------ASVVCEDCKKNVCTK--CGVETSNNRPHPVWL 100
Query: 108 CTICQKA 114
C IC +
Sbjct: 101 CKICLEQ 107
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger;
NMR {Homo sapiens} SCOP: g.41.3.1
Length = 62
Score = 25.6 bits (56), Expect = 2.2
Identities = 7/25 (28%), Positives = 11/25 (44%)
Query: 34 LQIHMRTHTGDKPFRCTICQKAFTT 58
++ R T F+C +C FT
Sbjct: 2 IETDERDSTNRASFKCPVCSSTFTD 26
Score = 25.6 bits (56), Expect = 2.2
Identities = 7/25 (28%), Positives = 11/25 (44%)
Query: 93 LQIHMRTHTGDKPFRCTICQKAFTT 117
++ R T F+C +C FT
Sbjct: 2 IETDERDSTNRASFKCPVCSSTFTD 26
Score = 24.4 bits (53), Expect = 6.8
Identities = 13/33 (39%), Positives = 15/33 (45%), Gaps = 3/33 (9%)
Query: 21 CHVCHKNFSSSSALQIHMRTHTGDKPFRCTICQ 53
C VC F+ A Q+ TG FRCT C
Sbjct: 17 CPVCSSTFTDLEANQL-FDPMTGT--FRCTFCH 46
Score = 24.4 bits (53), Expect = 6.8
Identities = 13/33 (39%), Positives = 15/33 (45%), Gaps = 3/33 (9%)
Query: 80 CHVCHKNFSSSSALQIHMRTHTGDKPFRCTICQ 112
C VC F+ A Q+ TG FRCT C
Sbjct: 17 CPVCSSTFTDLEANQL-FDPMTGT--FRCTFCH 46
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 98
Score = 26.1 bits (56), Expect = 2.7
Identities = 9/36 (25%), Positives = 14/36 (38%), Gaps = 1/36 (2%)
Query: 29 SSSSALQIHMRT-HTGDKPFRCTICQKAFTTKGNLK 63
+ L+ HM +C C+K F +K L
Sbjct: 36 KTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLN 71
Score = 26.1 bits (56), Expect = 2.7
Identities = 9/36 (25%), Positives = 14/36 (38%), Gaps = 1/36 (2%)
Query: 88 SSSSALQIHMRT-HTGDKPFRCTICQKAFTTKGNLK 122
+ L+ HM +C C+K F +K L
Sbjct: 36 KTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLN 71
Score = 24.9 bits (53), Expect = 7.0
Identities = 14/61 (22%), Positives = 17/61 (27%), Gaps = 1/61 (1%)
Query: 45 KPFRCTICQKAFTTKGNLKLIPNAVFNVAGMPKHLCHVCHKNFSSSSALQIHMRTHTGDK 104
C C T K + L + C C K F S + L H K
Sbjct: 23 GEAVCPTCN-VVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHSAK 81
Query: 105 P 105
P
Sbjct: 82 P 82
Score = 24.9 bits (53), Expect = 8.9
Identities = 9/32 (28%), Positives = 10/32 (31%)
Query: 15 GMPKHLCHVCHKNFSSSSALQIHMRTHTGDKP 46
C C K F S + L H KP
Sbjct: 51 LQDALKCQHCRKQFKSKAGLNYHTMAEHSAKP 82
>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC),
C2H2, APO metal-binding, nucleus, phosphoprotein,
transcription, TRAN regulation; 1.80A {Homo sapiens}
Length = 48
Score = 24.4 bits (52), Expect = 4.6
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 44 DKPFRCTICQKAFTTKGNLK 63
DKP+ C IC K + + L
Sbjct: 5 DKPYACDICGKRYKNRPGLS 24
Score = 24.4 bits (52), Expect = 4.6
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 103 DKPFRCTICQKAFTTKGNLK 122
DKP+ C IC K + + L
Sbjct: 5 DKPYACDICGKRYKNRPGLS 24
>3ucp_A UNDA; beta-barrel, C-type cytochrome, electron transport, C-type H
cell surface, transport protein; HET: HEC; 1.76A
{Shewanella SP} PDB: 3ufh_A* 3ufk_A*
Length = 874
Score = 26.6 bits (56), Expect = 5.2
Identities = 15/110 (13%), Positives = 27/110 (24%), Gaps = 1/110 (0%)
Query: 21 CHVCHKNFSSSSALQIHMRTHTGDKPFRCTICQKAFTTKGNLKLIPNAVFNVAGMPKHLC 80
C CH + + + G K + + IP C
Sbjct: 387 CASCHMSGFNPVDNSEWLTPPEGQKDRGFVGNYFHYYATPEIDGIPGVNLVHVF-QNGGC 445
Query: 81 HVCHKNFSSSSALQIHMRTHTGDKPFRCTICQKAFTTKGNLKVREIEINI 130
CH + + H+ K R K ++ E+ +
Sbjct: 446 ASCHAEQGEEGSAKYHLAKANATKLLRTEYAYKLENGTFDVAKGELTFTV 495
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB,
RAB27B, effector, SLP homology domain, acetylation,
lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Length = 153
Score = 25.7 bits (55), Expect = 5.9
Identities = 11/82 (13%), Positives = 19/82 (23%), Gaps = 19/82 (23%)
Query: 37 HMRTHTGDKPFRCTICQKAFTTKGNLKLIPNAVFNVAGMPKHLCHVCHKNFSSSSALQIH 96
+ C C + + N + C C S +
Sbjct: 59 LLSDTAHLNETHCARCLQPYRLLLN--------------SRRQCLECSLFVCKSCS---- 100
Query: 97 MRTHTGDKPFRCTICQKAFTTK 118
H ++ + C C A K
Sbjct: 101 -HAHPEEQGWLCDPCHLARVVK 121
>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C
region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC;
2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2
b.1.1.2
Length = 444
Score = 26.0 bits (57), Expect = 6.4
Identities = 8/33 (24%), Positives = 11/33 (33%)
Query: 26 KNFSSSSALQIHMRTHTGDKPFRCTICQKAFTT 58
SAL I + K F+C + K
Sbjct: 299 STLRVVSALPIQHQDWMSGKEFKCKVNNKDLPA 331
Score = 26.0 bits (57), Expect = 6.4
Identities = 8/33 (24%), Positives = 11/33 (33%)
Query: 85 KNFSSSSALQIHMRTHTGDKPFRCTICQKAFTT 117
SAL I + K F+C + K
Sbjct: 299 STLRVVSALPIQHQDWMSGKEFKCKVNNKDLPA 331
>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 24.0 bits (51), Expect = 6.6
Identities = 11/22 (50%), Positives = 12/22 (54%)
Query: 21 CHVCHKNFSSSSALQIHMRTHT 42
C+ C K FS S L H R HT
Sbjct: 15 CNKCEKTFSCSKYLTQHERIHT 36
Score = 24.0 bits (51), Expect = 6.6
Identities = 11/22 (50%), Positives = 12/22 (54%)
Query: 80 CHVCHKNFSSSSALQIHMRTHT 101
C+ C K FS S L H R HT
Sbjct: 15 CNKCEKTFSCSKYLTQHERIHT 36
>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 23.6 bits (50), Expect = 8.8
Identities = 9/27 (33%), Positives = 11/27 (40%)
Query: 19 HLCHVCHKNFSSSSALQIHMRTHTGDK 45
H C C + F +L H H G K
Sbjct: 13 HQCRECGEIFFQYVSLIEHQVLHMGQK 39
Score = 23.6 bits (50), Expect = 8.8
Identities = 9/27 (33%), Positives = 11/27 (40%)
Query: 78 HLCHVCHKNFSSSSALQIHMRTHTGDK 104
H C C + F +L H H G K
Sbjct: 13 HQCRECGEIFFQYVSLIEHQVLHMGQK 39
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 23.3 bits (49), Expect = 9.0
Identities = 10/19 (52%), Positives = 15/19 (78%)
Query: 45 KPFRCTICQKAFTTKGNLK 63
KPF+C++C+ A +K NLK
Sbjct: 8 KPFKCSLCEYATRSKSNLK 26
Score = 23.3 bits (49), Expect = 9.0
Identities = 10/19 (52%), Positives = 15/19 (78%)
Query: 104 KPFRCTICQKAFTTKGNLK 122
KPF+C++C+ A +K NLK
Sbjct: 8 KPFKCSLCEYATRSKSNLK 26
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 23.3 bits (49), Expect = 9.2
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 19 HLCHVCHKNFSSSSALQIHMRTHTGDK 45
+ C C + + L +H+R HTG+K
Sbjct: 10 YKCPQCSYASAIKANLNVHLRKHTGEK 36
Score = 23.3 bits (49), Expect = 9.2
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 78 HLCHVCHKNFSSSSALQIHMRTHTGDK 104
+ C C + + L +H+R HTG+K
Sbjct: 10 YKCPQCSYASAIKANLNVHLRKHTGEK 36
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.133 0.419
Gapped
Lambda K H
0.267 0.0659 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,241,529
Number of extensions: 117617
Number of successful extensions: 1485
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1212
Number of HSP's successfully gapped: 708
Length of query: 159
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 73
Effective length of database: 4,300,587
Effective search space: 313942851
Effective search space used: 313942851
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (24.3 bits)