BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9696
(96 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6NV26|SDA1_DANRE Protein SDA1 homolog OS=Danio rerio GN=sdad1 PE=2 SV=1
Length = 682
Score = 131 bits (330), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 66/89 (74%), Positives = 74/89 (83%)
Query: 8 TFCKALILLRNKGLLTPIDLLPLFFGLLRCPDKPLRKFLETHIITDIKNINAKHKNAKLN 67
TFCKALI+LRNK L++P LL LFF LLRC DK LRK L THI+TDIKNINAKHKN K+N
Sbjct: 99 TFCKALIMLRNKDLVSPTSLLGLFFELLRCHDKLLRKTLYTHIVTDIKNINAKHKNNKMN 158
Query: 68 TTLQNFMYEMLKDSNHRAAKMSLSIMVHL 96
TTLQNFMY ML+DSN AAK+SL +MV L
Sbjct: 159 TTLQNFMYTMLRDSNPIAAKISLDVMVEL 187
>sp|Q9NVU7|SDA1_HUMAN Protein SDA1 homolog OS=Homo sapiens GN=SDAD1 PE=1 SV=3
Length = 687
Score = 129 bits (323), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 64/89 (71%), Positives = 70/89 (78%)
Query: 8 TFCKALILLRNKGLLTPIDLLPLFFGLLRCPDKPLRKFLETHIITDIKNINAKHKNAKLN 67
TFCKALILLRNK L+ P LL LFF L RC DK LRK L THI+TDIKNINAKHKN K+N
Sbjct: 99 TFCKALILLRNKNLINPSSLLELFFELFRCHDKLLRKTLYTHIVTDIKNINAKHKNNKVN 158
Query: 68 TTLQNFMYEMLKDSNHRAAKMSLSIMVHL 96
LQNFMY ML+DSN AAKMSL +M+ L
Sbjct: 159 VVLQNFMYTMLRDSNATAAKMSLDVMIEL 187
>sp|Q7KKH3|SDA1_DROME Protein SDA1 homolog OS=Drosophila melanogaster GN=Mys45A PE=1 SV=1
Length = 712
Score = 127 bits (318), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 61/88 (69%), Positives = 73/88 (82%)
Query: 9 FCKALILLRNKGLLTPIDLLPLFFGLLRCPDKPLRKFLETHIITDIKNINAKHKNAKLNT 68
F KALILLRNK L+ +D+L LFF LLRCPDK LR FL+THI+TDIKN+NAKHK+ KLN+
Sbjct: 100 FVKALILLRNKNLVPALDILELFFQLLRCPDKNLRTFLQTHIVTDIKNMNAKHKDMKLNS 159
Query: 69 TLQNFMYEMLKDSNHRAAKMSLSIMVHL 96
+LQ FMY MLKD+N +AAKMS IM+ L
Sbjct: 160 SLQAFMYSMLKDANPKAAKMSADIMIEL 187
>sp|A7S6A5|SDA1_NEMVE Protein SDA1 homolog OS=Nematostella vectensis GN=sdad1 PE=3 SV=1
Length = 687
Score = 122 bits (307), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 59/89 (66%), Positives = 71/89 (79%)
Query: 8 TFCKALILLRNKGLLTPIDLLPLFFGLLRCPDKPLRKFLETHIITDIKNINAKHKNAKLN 67
T C+ALILLRNK L++P +L LFF L RC DK LR+ L THI+TDIKN+NAKHKN K+N
Sbjct: 105 TLCRALILLRNKDLISPTSILELFFELFRCNDKVLRQVLYTHIVTDIKNMNAKHKNNKVN 164
Query: 68 TTLQNFMYEMLKDSNHRAAKMSLSIMVHL 96
+TLQNFMY MLKDSN AAK SL +++ L
Sbjct: 165 STLQNFMYTMLKDSNAVAAKKSLDVLIEL 193
>sp|Q5XIQ5|SDA1_RAT Protein SDA1 homolog OS=Rattus norvegicus GN=Sdad1 PE=2 SV=1
Length = 686
Score = 117 bits (293), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 66/89 (74%), Positives = 72/89 (80%)
Query: 8 TFCKALILLRNKGLLTPIDLLPLFFGLLRCPDKPLRKFLETHIITDIKNINAKHKNAKLN 67
TFCKALILLRNK L+ P DLL LFF LLRC DK LRK L THI+TDIKNINAKHKN K+N
Sbjct: 99 TFCKALILLRNKNLINPSDLLELFFELLRCRDKLLRKTLYTHIVTDIKNINAKHKNNKVN 158
Query: 68 TTLQNFMYEMLKDSNHRAAKMSLSIMVHL 96
LQNFMY ML+DSN AAKMSL +M+ L
Sbjct: 159 VVLQNFMYTMLRDSNATAAKMSLDVMIEL 187
>sp|Q80UZ2|SDA1_MOUSE Protein SDA1 homolog OS=Mus musculus GN=Sdad1 PE=1 SV=1
Length = 687
Score = 114 bits (285), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 65/89 (73%), Positives = 71/89 (79%)
Query: 8 TFCKALILLRNKGLLTPIDLLPLFFGLLRCPDKPLRKFLETHIITDIKNINAKHKNAKLN 67
TFCKALILLRNK L+ P LL LFF LLRC DK LRK L THI+TDIKNINAKHKN K+N
Sbjct: 99 TFCKALILLRNKNLINPSSLLELFFELLRCHDKLLRKTLYTHIVTDIKNINAKHKNNKVN 158
Query: 68 TTLQNFMYEMLKDSNHRAAKMSLSIMVHL 96
LQNFMY ML+DSN AAKMSL +M+ L
Sbjct: 159 VVLQNFMYTMLRDSNATAAKMSLDVMIEL 187
>sp|A5D7C2|SDA1_BOVIN Protein SDA1 homolog OS=Bos taurus GN=SDAD1 PE=2 SV=1
Length = 688
Score = 112 bits (280), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 64/89 (71%), Positives = 71/89 (79%)
Query: 8 TFCKALILLRNKGLLTPIDLLPLFFGLLRCPDKPLRKFLETHIITDIKNINAKHKNAKLN 67
TFCKALILLRNK L+ P LL LFF LLRC DK LRK L THI+TDIKNINAKHKN K+N
Sbjct: 99 TFCKALILLRNKNLINPSSLLELFFELLRCHDKLLRKTLYTHIVTDIKNINAKHKNNKVN 158
Query: 68 TTLQNFMYEMLKDSNHRAAKMSLSIMVHL 96
LQNFMY ML+DSN AAK+SL +M+ L
Sbjct: 159 IVLQNFMYTMLRDSNATAAKISLDVMIEL 187
>sp|Q2VPG3|SDA1_XENLA Protein SDA1 homolog OS=Xenopus laevis GN=sdad1 PE=2 SV=1
Length = 689
Score = 110 bits (276), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 63/89 (70%), Positives = 73/89 (82%)
Query: 8 TFCKALILLRNKGLLTPIDLLPLFFGLLRCPDKPLRKFLETHIITDIKNINAKHKNAKLN 67
T CKALI+LRNK L++P LL LFF LLRC DK LRK L THI+TDIKNINAKHKN K+N
Sbjct: 99 TLCKALIMLRNKNLISPSVLLELFFELLRCQDKLLRKTLYTHIVTDIKNINAKHKNNKVN 158
Query: 68 TTLQNFMYEMLKDSNHRAAKMSLSIMVHL 96
TTLQNFMY ML+D+N AAK+SL +M+ L
Sbjct: 159 TTLQNFMYTMLRDNNAIAAKISLDVMIEL 187
>sp|A4IIB1|SDA1_XENTR Protein SDA1 homolog OS=Xenopus tropicalis GN=sdad1 PE=2 SV=1
Length = 689
Score = 110 bits (276), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 63/89 (70%), Positives = 73/89 (82%)
Query: 8 TFCKALILLRNKGLLTPIDLLPLFFGLLRCPDKPLRKFLETHIITDIKNINAKHKNAKLN 67
T CKALILLRNK L++P LL LFF LLRC DK LRK L THI+TDIKNINAKHKN K+N
Sbjct: 99 TLCKALILLRNKNLISPSVLLELFFELLRCQDKLLRKTLYTHIVTDIKNINAKHKNNKVN 158
Query: 68 TTLQNFMYEMLKDSNHRAAKMSLSIMVHL 96
TTLQNFMY M++D+N AAK+SL +M+ L
Sbjct: 159 TTLQNFMYTMVRDNNAIAAKISLDVMIEL 187
>sp|Q55DE2|SDA1_DICDI Protein SDA1 homolog OS=Dictyostelium discoideum GN=sdad1 PE=3 SV=1
Length = 756
Score = 99.8 bits (247), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 49/87 (56%), Positives = 61/87 (70%)
Query: 10 CKALILLRNKGLLTPIDLLPLFFGLLRCPDKPLRKFLETHIITDIKNINAKHKNAKLNTT 69
K+LIL+RN+ LL I +L LFF L R DKPLR L +HI+ DIKN N K KN KLN T
Sbjct: 96 AKSLILMRNRNLLPQIQMLSLFFKLFRVHDKPLRSLLYSHIVADIKNTNLKQKNQKLNRT 155
Query: 70 LQNFMYEMLKDSNHRAAKMSLSIMVHL 96
LQNFM+ M+ D + A+KMSL +M+ L
Sbjct: 156 LQNFMFTMMNDDSEIASKMSLKVMIEL 182
>sp|Q9NEU2|SDA1_CAEEL Protein SDA1 homolog OS=Caenorhabditis elegans GN=pro-3 PE=1 SV=4
Length = 801
Score = 66.2 bits (160), Expect = 6e-11, Method: Composition-based stats.
Identities = 35/83 (42%), Positives = 52/83 (62%), Gaps = 3/83 (3%)
Query: 9 FCKALILLRNKGLLTPIDLLPLFFGLLRCPDKPLRKFLETHIITDIKNINAKHKNAKLNT 68
FCKAL+LLRN+ ++ PI L+ FF L++ DK LRKFL + I +K + K K+ K+
Sbjct: 137 FCKALVLLRNQDMIDPIILMETFFELVKVEDKVLRKFLLSSISAHLKRVYHKKKDVKMLG 196
Query: 69 TLQNFMYEMLKDSNH---RAAKM 88
+QN + +KDS RAA++
Sbjct: 197 KIQNLCFSKMKDSRSIVARAAQL 219
>sp|Q10342|SDA1_SCHPO Protein sda1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=sda1 PE=3 SV=2
Length = 719
Score = 51.2 bits (121), Expect = 2e-06, Method: Composition-based stats.
Identities = 27/75 (36%), Positives = 45/75 (60%), Gaps = 1/75 (1%)
Query: 13 LILLRNKGLLTPIDLLPLFFGLLR-CPDKPLRKFLETHIITDIKNINAKHKNAKLNTTLQ 71
L+LL+NK +++PI LL FF L R P + +R+ L + I+N N + KN KLN +Q
Sbjct: 105 LVLLKNKTVISPITLLQCFFPLFRENPTRGVRELLYQQVSLTIRNANKQAKNDKLNKAVQ 164
Query: 72 NFMYEMLKDSNHRAA 86
+ ++ ++ S +A
Sbjct: 165 SALFTLVDGSGSGSA 179
>sp|P53313|SDA1_YEAST Protein SDA1 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=SDA1 PE=1 SV=1
Length = 767
Score = 37.7 bits (86), Expect = 0.019, Method: Composition-based stats.
Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 12/78 (15%)
Query: 13 LILLRNKGLLTPIDLLPLFFGLL------------RCPDKPLRKFLETHIITDIKNINAK 60
L +LRNK ++T +L+ F LL K LRK + T++I+ +K+ N
Sbjct: 135 LTMLRNKDVITAEELIQSLFPLLVAYSSHGNSLGVNSHAKELRKIIYTNLISLLKSCNTN 194
Query: 61 HKNAKLNTTLQNFMYEML 78
KN KLN + Q + +L
Sbjct: 195 GKNQKLNKSTQAVCFNLL 212
>sp|Q3ZJ93|RPOB_PSEAK DNA-directed RNA polymerase subunit beta OS=Pseudendoclonium
akinetum GN=rpoB PE=3 SV=1
Length = 2178
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 8/72 (11%)
Query: 6 SDTFCKALILLRNKGLLTPIDL--LPLFFGLLRCPDKPLRKFLETHIITDIKNINAKHKN 63
+D+ CK + N+ L +P+ +P F + R R+FL++ +IT+ KN + +
Sbjct: 41 TDSLCKQSLKAYNEKLYSPLSQFKIPDFLNIQRSS---FRQFLKSGLITEFKNCKSITNS 97
Query: 64 AKLNTTLQNFMY 75
N T + F Y
Sbjct: 98 ---NQTFEVFFY 106
>sp|Q979R3|TRM56_THEVO tRNA (cytidine(56)-2'-O)-methyltransferase OS=Thermoplasma
volcanium (strain ATCC 51530 / DSM 4299 / JCM 9571 /
NBRC 15438 / GSS1) GN=TV1097 PE=3 SV=1
Length = 338
Score = 29.3 bits (64), Expect = 6.9, Method: Composition-based stats.
Identities = 15/51 (29%), Positives = 26/51 (50%)
Query: 38 PDKPLRKFLETHIITDIKNINAKHKNAKLNTTLQNFMYEMLKDSNHRAAKM 88
PD + + +E I+ N+ A K KL + N+ + L+D+ R AK+
Sbjct: 273 PDNYVPETIEEMIVAHADNLFAGDKRLKLQQVVDNYRKKGLEDAAERIAKL 323
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.325 0.138 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,249,747
Number of Sequences: 539616
Number of extensions: 1052138
Number of successful extensions: 3008
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 2992
Number of HSP's gapped (non-prelim): 18
length of query: 96
length of database: 191,569,459
effective HSP length: 66
effective length of query: 30
effective length of database: 155,954,803
effective search space: 4678644090
effective search space used: 4678644090
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)