Query psy9696
Match_columns 96
No_of_seqs 106 out of 168
Neff 4.9
Searched_HMMs 29240
Date Fri Aug 16 17:17:11 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9696.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9696hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qk2_A LP04448P; mini spindles 91.4 2.6 8.7E-05 29.2 10.0 81 3-85 112-192 (242)
2 4db6_A Armadillo repeat protei 67.3 16 0.00054 23.9 5.8 90 2-92 67-161 (210)
3 3gs3_A Symplekin, LD45768P; he 65.9 38 0.0013 25.1 10.1 80 9-94 36-115 (257)
4 4db8_A Armadillo-repeat protei 63.2 25 0.00085 23.5 6.3 86 2-91 25-118 (252)
5 4hxt_A De novo protein OR329; 61.0 22 0.00074 23.5 5.5 88 2-93 99-194 (252)
6 4db6_A Armadillo repeat protei 60.8 29 0.00098 22.6 6.1 91 2-93 109-204 (210)
7 2jdq_A Importin alpha-1 subuni 56.5 48 0.0017 23.9 7.2 92 2-93 331-438 (450)
8 4db8_A Armadillo-repeat protei 55.1 36 0.0012 22.7 6.0 92 2-94 151-247 (252)
9 1b3u_A Protein (protein phosph 52.0 41 0.0014 25.2 6.3 81 3-83 256-338 (588)
10 3tjz_B Coatomer subunit gamma; 52.0 42 0.0014 25.9 6.5 49 3-51 41-93 (355)
11 2jdq_A Importin alpha-1 subuni 49.4 59 0.002 23.5 6.7 83 3-85 290-377 (450)
12 2doe_A Transcription elongatio 43.4 49 0.0017 20.4 4.7 43 13-56 24-73 (83)
13 2qk1_A Protein STU2; STU2P, XM 43.1 85 0.0029 22.1 8.9 83 3-85 118-207 (249)
14 4hxt_A De novo protein OR329; 42.1 70 0.0024 20.9 8.5 91 2-93 141-236 (252)
15 3b2a_A TON_1937, putative unch 39.7 1.2E+02 0.0043 23.0 7.4 68 26-94 33-100 (265)
16 1wa5_B Importin alpha subunit; 38.3 56 0.0019 24.8 5.2 83 2-85 186-273 (530)
17 3o2t_A Symplekin; heat repeat, 37.5 1.5E+02 0.0051 23.3 10.9 77 12-94 49-125 (386)
18 1wa5_B Importin alpha subunit; 36.2 1.4E+02 0.0048 22.6 7.7 56 2-57 396-459 (530)
19 2vgl_B AP-2 complex subunit be 36.0 1.6E+02 0.0054 23.2 9.6 49 3-52 27-75 (591)
20 3ltm_A Alpha-REP4; protein eng 34.7 94 0.0032 20.2 9.1 38 3-46 95-132 (211)
21 3ltj_A Alpharep-4; protein eng 34.1 94 0.0032 20.0 9.1 38 3-46 90-127 (201)
22 3ltm_A Alpha-REP4; protein eng 32.1 1.1E+02 0.0036 20.0 7.4 12 74-85 117-128 (211)
23 4fdd_A Transportin-1; heat rep 29.1 2.3E+02 0.0078 22.9 10.4 89 2-92 187-279 (852)
24 2ahm_E Replicase NSP8, replica 26.2 34 0.0012 25.2 2.1 19 62-80 84-102 (203)
25 1w63_A Adapter-related protein 25.5 1.5E+02 0.005 23.6 5.9 88 2-95 398-487 (618)
26 1te4_A Conserved protein MTH18 25.5 1.2E+02 0.0041 18.5 6.5 74 2-93 55-128 (131)
27 3ub0_A Non-structural protein 25.5 32 0.0011 25.3 1.8 19 62-80 83-101 (199)
28 3ltj_A Alpharep-4; protein eng 23.9 1.5E+02 0.0051 19.0 7.5 20 27-46 77-96 (201)
29 4b8j_A Importin subunit alpha- 22.9 2.4E+02 0.0083 21.1 7.8 91 2-92 342-437 (528)
30 2bpt_A Importin beta-1 subunit 22.1 2.9E+02 0.01 21.7 8.6 47 2-48 108-157 (861)
31 1oyz_A Hypothetical protein YI 20.6 2.1E+02 0.0071 19.4 8.2 20 71-90 194-213 (280)
32 2jtt_C Calcyclin-binding prote 20.5 59 0.002 17.4 1.8 13 2-14 20-32 (35)
33 2z6g_A B-catenin; FULL-length, 20.1 3.4E+02 0.012 22.3 7.2 94 2-96 206-303 (780)
No 1
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=91.35 E-value=2.6 Score=29.19 Aligned_cols=81 Identities=10% Similarity=0.051 Sum_probs=60.2
Q ss_pred chHHHHHHHHHHHHHhCCCCChhhhHHHhhhhccCCChhHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhccCC
Q psy9696 3 KGSSDTFCKALILLRNKGLLTPIDLLPLFFGLLRCPDKPLRKFLETHIITDIKNINAKHKNAKLNTTLQNFMYEMLKDSN 82 (96)
Q Consensus 3 p~lR~~lv~aLilLRnk~~i~~~~lL~~~f~Ll~~~dK~LR~~l~~~IvsdIk~~N~k~kn~klNr~lQ~~lf~ml~d~~ 82 (96)
+..|.+.+.||--+-.. .+...+++.+++.+.-.+...|....+.|-.-+.+.+...-....-..+-..+..++.|++
T Consensus 112 ~~vr~~a~~aL~~~~~~--~~~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l~~l~p~l~~~l~D~~ 189 (242)
T 2qk2_A 112 PNVVTALREAIDAIYAS--TSLEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTLNEPD 189 (242)
T ss_dssp HHHHHHHHHHHHHHHTT--SCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHTSSC
T ss_pred HHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHhcCCC
Confidence 56788888888877553 4678899999999988888999988888877666654332233444578888899999987
Q ss_pred HHH
Q psy9696 83 HRA 85 (96)
Q Consensus 83 ~~~ 85 (96)
+..
T Consensus 190 ~~V 192 (242)
T 2qk2_A 190 PTV 192 (242)
T ss_dssp HHH
T ss_pred hHH
Confidence 733
No 2
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=67.28 E-value=16 Score=23.89 Aligned_cols=90 Identities=13% Similarity=0.101 Sum_probs=45.8
Q ss_pred CchHHHHHHHHHHHHHhC-----CCCChhhhHHHhhhhccCCChhHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHH
Q psy9696 2 AKGSSDTFCKALILLRNK-----GLLTPIDLLPLFFGLLRCPDKPLRKFLETHIITDIKNINAKHKNAKLNTTLQNFMYE 76 (96)
Q Consensus 2 ~p~lR~~lv~aLilLRnk-----~~i~~~~lL~~~f~Ll~~~dK~LR~~l~~~IvsdIk~~N~k~kn~klNr~lQ~~lf~ 76 (96)
+++.|..-+.+|--+-.. ..+-....++.+.+++..+|..+|.....-+-+ +-.-+...+..-++.-.=..+..
T Consensus 67 ~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~-l~~~~~~~~~~~~~~~~i~~L~~ 145 (210)
T 4db6_A 67 NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSN-IASGGNEQIQAVIDAGALPALVQ 145 (210)
T ss_dssp CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHH-HTTSCHHHHHHHHHTTHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHH-HHcCCHHHHHHHHHcCcHHHHHH
Confidence 356666666666655321 112223478899999999898877755443322 11111111111122223344567
Q ss_pred HhccCCHHHHHHHHHH
Q psy9696 77 MLKDSNHRAAKMSLSI 92 (96)
Q Consensus 77 ml~d~~~~~Ak~al~v 92 (96)
+++++++..-..|+..
T Consensus 146 ll~~~~~~v~~~a~~a 161 (210)
T 4db6_A 146 LLSSPNEQILQEALWA 161 (210)
T ss_dssp HTTCSCHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHH
Confidence 7777766444444443
No 3
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=65.88 E-value=38 Score=25.05 Aligned_cols=80 Identities=14% Similarity=0.081 Sum_probs=51.7
Q ss_pred HHHHHHHHHhCCCCChhhhHHHhhhhccCCChhHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhccCCHHHHHH
Q psy9696 9 FCKALILLRNKGLLTPIDLLPLFFGLLRCPDKPLRKFLETHIITDIKNINAKHKNAKLNTTLQNFMYEMLKDSNHRAAKM 88 (96)
Q Consensus 9 lv~aLilLRnk~~i~~~~lL~~~f~Ll~~~dK~LR~~l~~~IvsdIk~~N~k~kn~klNr~lQ~~lf~ml~d~~~~~Ak~ 88 (96)
+.|+=-++-+++.--..+.++..+++..-++-.+|+++-.+|=.-- +.+.+=..+.+++. ..+++|+++.+.|.
T Consensus 36 L~qa~el~~~~dp~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~-----~~k~~l~~~~l~~L-~~Ll~d~d~~V~K~ 109 (257)
T 3gs3_A 36 LAKVQETVLGSCAELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVC-----KVKVELLPHVINVV-SMLLRDNSAQVIKR 109 (257)
T ss_dssp HHHHHHHHTTTTGGGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHH-----HHCGGGHHHHHHHH-HHHTTCSCHHHHHH
T ss_pred HHHHHHHHHccCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHH-HHHHcCCCHHHHHH
Confidence 3344444555553333456666667655567888888766664333 33556677777765 67788999999999
Q ss_pred HHHHhh
Q psy9696 89 SLSIMV 94 (96)
Q Consensus 89 al~v~~ 94 (96)
|...+.
T Consensus 110 ~I~~~~ 115 (257)
T 3gs3_A 110 VIQACG 115 (257)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 987654
No 4
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=63.19 E-value=25 Score=23.55 Aligned_cols=86 Identities=14% Similarity=0.180 Sum_probs=47.7
Q ss_pred CchHHHHHHHHH-HHHHh----CCCCChhhhHHHhhhhccCCChhHHHHHHHHHHHHHHHHhh---hhhhhHHHHHHHHH
Q psy9696 2 AKGSSDTFCKAL-ILLRN----KGLLTPIDLLPLFFGLLRCPDKPLRKFLETHIITDIKNINA---KHKNAKLNTTLQNF 73 (96)
Q Consensus 2 ~p~lR~~lv~aL-ilLRn----k~~i~~~~lL~~~f~Ll~~~dK~LR~~l~~~IvsdIk~~N~---k~kn~klNr~lQ~~ 73 (96)
+|+.|..-+++| -++.. +..+-....++.+++++..++..+|......+ .++-. ..+..-...-.=..
T Consensus 25 ~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L----~~l~~~~~~~~~~i~~~g~i~~ 100 (252)
T 4db8_A 25 DMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWAL----SNIASGGNEQIQAVIDAGALPA 100 (252)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHH----HHHTTSCHHHHHHHHHTTHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHH----HHHhcCCHHHHHHHHHcCCHHH
Confidence 467888888888 44432 11222335788999999988877776554433 33322 11212122222345
Q ss_pred HHHHhccCCHHHHHHHHH
Q psy9696 74 MYEMLKDSNHRAAKMSLS 91 (96)
Q Consensus 74 lf~ml~d~~~~~Ak~al~ 91 (96)
+..+++++++..-..|+.
T Consensus 101 L~~lL~~~~~~v~~~a~~ 118 (252)
T 4db8_A 101 LVQLLSSPNEQILQEALW 118 (252)
T ss_dssp HHHGGGCSCHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHH
Confidence 577888877644444443
No 5
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=60.95 E-value=22 Score=23.49 Aligned_cols=88 Identities=13% Similarity=0.158 Sum_probs=47.8
Q ss_pred CchHHHHHHHHHHHHHhCC-----CCChhhhHHHhhhhccCCChhHHHHHHHHHHHHHHHHhhhhh---hhHHHHHHHHH
Q psy9696 2 AKGSSDTFCKALILLRNKG-----LLTPIDLLPLFFGLLRCPDKPLRKFLETHIITDIKNINAKHK---NAKLNTTLQNF 73 (96)
Q Consensus 2 ~p~lR~~lv~aLilLRnk~-----~i~~~~lL~~~f~Ll~~~dK~LR~~l~~~IvsdIk~~N~k~k---n~klNr~lQ~~ 73 (96)
+++.|...+.+|--+-..+ .+-....++.+++++..+|..+|......+ .++-.... ..-...-.=..
T Consensus 99 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L----~~l~~~~~~~~~~~~~~~~i~~ 174 (252)
T 4hxt_A 99 DSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARAL----ANIASGPDEAIKAIVDAGGVEV 174 (252)
T ss_dssp SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHH----HHHTTSCHHHHHHHHHTTHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHH----HHHHcCCHHHHHHHHHCcCHHH
Confidence 3567777777776665321 111125788899999988877776544433 33322211 11112223344
Q ss_pred HHHHhccCCHHHHHHHHHHh
Q psy9696 74 MYEMLKDSNHRAAKMSLSIM 93 (96)
Q Consensus 74 lf~ml~d~~~~~Ak~al~v~ 93 (96)
+..+++++++..-..|+..+
T Consensus 175 L~~ll~~~~~~v~~~a~~~L 194 (252)
T 4hxt_A 175 LVKLLTSTDSEVQKEAARAL 194 (252)
T ss_dssp HHHHTTCSCHHHHHHHHHHH
T ss_pred HHHHHCCCCHHHHHHHHHHH
Confidence 57777777765544444443
No 6
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=60.80 E-value=29 Score=22.61 Aligned_cols=91 Identities=13% Similarity=0.102 Sum_probs=49.8
Q ss_pred CchHHHHHHHHHHHHHhCC-----CCChhhhHHHhhhhccCCChhHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHH
Q psy9696 2 AKGSSDTFCKALILLRNKG-----LLTPIDLLPLFFGLLRCPDKPLRKFLETHIITDIKNINAKHKNAKLNTTLQNFMYE 76 (96)
Q Consensus 2 ~p~lR~~lv~aLilLRnk~-----~i~~~~lL~~~f~Ll~~~dK~LR~~l~~~IvsdIk~~N~k~kn~klNr~lQ~~lf~ 76 (96)
+++.|..-+.+|--+-..+ .+-....++.+.+++..+|..+|......+.+=... +...+..-...-.-..+..
T Consensus 109 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~-~~~~~~~~~~~g~i~~L~~ 187 (210)
T 4db6_A 109 NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG-GNEQKQAVKEAGALEKLEQ 187 (210)
T ss_dssp CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTS-CHHHHHHHHHTTHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC-CcHHHHHHHHCCCHHHHHH
Confidence 3566666666666554211 111235788999999888888777665544433321 1111111112223334577
Q ss_pred HhccCCHHHHHHHHHHh
Q psy9696 77 MLKDSNHRAAKMSLSIM 93 (96)
Q Consensus 77 ml~d~~~~~Ak~al~v~ 93 (96)
+++++++...+.|...+
T Consensus 188 ll~~~~~~v~~~a~~aL 204 (210)
T 4db6_A 188 LQSHENEKIQKEAQEAL 204 (210)
T ss_dssp GGGCSCHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHH
Confidence 88887776655555544
No 7
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=56.46 E-value=48 Score=23.93 Aligned_cols=92 Identities=9% Similarity=0.069 Sum_probs=53.0
Q ss_pred CchHHHHHHHHHHHHHhCC---CCC---hhhhHHHhhhhccCCChhHHHHHHHHHHHHHHHHhhhhh--hhHHHHHHHHH
Q psy9696 2 AKGSSDTFCKALILLRNKG---LLT---PIDLLPLFFGLLRCPDKPLRKFLETHIITDIKNINAKHK--NAKLNTTLQNF 73 (96)
Q Consensus 2 ~p~lR~~lv~aLilLRnk~---~i~---~~~lL~~~f~Ll~~~dK~LR~~l~~~IvsdIk~~N~k~k--n~klNr~lQ~~ 73 (96)
+|+.|...+.+|--+-..+ .+. ....++.+++++..+|..+|......+.+=+.......+ +...+.-.+.|
T Consensus 331 ~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~~~~~~~l 410 (450)
T 2jdq_A 331 EFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNGTGINPYCALI 410 (450)
T ss_dssp CHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhccccchhHHHHHH
Confidence 4677888888877664332 010 235888999999999999988877766555543322111 00012222222
Q ss_pred --------HHHHhccCCHHHHHHHHHHh
Q psy9696 74 --------MYEMLKDSNHRAAKMSLSIM 93 (96)
Q Consensus 74 --------lf~ml~d~~~~~Ak~al~v~ 93 (96)
+..+..++++.....|+.++
T Consensus 411 ~~~g~~~~l~~l~~~~~~~v~~~a~~~l 438 (450)
T 2jdq_A 411 EEAYGLDKIEFLQSHENQEIYQKAFDLI 438 (450)
T ss_dssp HHHHCHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHcCcHHHHHHHHcCCCHHHHHHHHHHH
Confidence 56666666665666666554
No 8
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=55.06 E-value=36 Score=22.70 Aligned_cols=92 Identities=13% Similarity=0.077 Sum_probs=49.8
Q ss_pred CchHHHHHHHHHHHHHhCC-----CCChhhhHHHhhhhccCCChhHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHH
Q psy9696 2 AKGSSDTFCKALILLRNKG-----LLTPIDLLPLFFGLLRCPDKPLRKFLETHIITDIKNINAKHKNAKLNTTLQNFMYE 76 (96)
Q Consensus 2 ~p~lR~~lv~aLilLRnk~-----~i~~~~lL~~~f~Ll~~~dK~LR~~l~~~IvsdIk~~N~k~kn~klNr~lQ~~lf~ 76 (96)
+++.|...+.+|--+-..+ .+-....++.+.+++..+|..+|......+-+=.. .+...+..-...-.-..+..
T Consensus 151 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~-~~~~~~~~~~~~g~i~~L~~ 229 (252)
T 4db8_A 151 NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS-GGNEQKQAVKEAGALEKLEQ 229 (252)
T ss_dssp CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTT-SCHHHHHHHHHTTHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhc-CCHHHHHHHHHCCcHHHHHH
Confidence 3566777777776665322 11123568889999998888887766544443221 11111211122223334566
Q ss_pred HhccCCHHHHHHHHHHhh
Q psy9696 77 MLKDSNHRAAKMSLSIMV 94 (96)
Q Consensus 77 ml~d~~~~~Ak~al~v~~ 94 (96)
+++++++.....|..++.
T Consensus 230 ll~~~~~~v~~~A~~~L~ 247 (252)
T 4db8_A 230 LQSHENEKIQKEAQEALE 247 (252)
T ss_dssp TTTCSSSHHHHTHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHH
Confidence 777776655555555443
No 9
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=52.04 E-value=41 Score=25.20 Aligned_cols=81 Identities=17% Similarity=0.257 Sum_probs=44.3
Q ss_pred chHHHHHHHHHHHHHhC-C-CCChhhhHHHhhhhccCCChhHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhcc
Q psy9696 3 KGSSDTFCKALILLRNK-G-LLTPIDLLPLFFGLLRCPDKPLRKFLETHIITDIKNINAKHKNAKLNTTLQNFMYEMLKD 80 (96)
Q Consensus 3 p~lR~~lv~aLilLRnk-~-~i~~~~lL~~~f~Ll~~~dK~LR~~l~~~IvsdIk~~N~k~kn~klNr~lQ~~lf~ml~d 80 (96)
+..|...+++|--+-.. | -....++++.+..++.-++..+|......+-.=...+....+.......+-..+..+++|
T Consensus 256 ~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d 335 (588)
T 1b3u_A 256 WRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSD 335 (588)
T ss_dssp HHHHHHHHHTHHHHHHHHCHHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHhCcccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcC
Confidence 45677777777655431 0 001246788888988888889998766655443333322111112223334444555666
Q ss_pred CCH
Q psy9696 81 SNH 83 (96)
Q Consensus 81 ~~~ 83 (96)
+++
T Consensus 336 ~~~ 338 (588)
T 1b3u_A 336 ANQ 338 (588)
T ss_dssp SCH
T ss_pred CCH
Confidence 554
No 10
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=52.04 E-value=42 Score=25.92 Aligned_cols=49 Identities=22% Similarity=0.329 Sum_probs=33.6
Q ss_pred chHHHHHHHHHHHHHhCC-CCChhhhHHHhh---hhccCCChhHHHHHHHHHH
Q psy9696 3 KGSSDTFCKALILLRNKG-LLTPIDLLPLFF---GLLRCPDKPLRKFLETHII 51 (96)
Q Consensus 3 p~lR~~lv~aLilLRnk~-~i~~~~lL~~~f---~Ll~~~dK~LR~~l~~~Iv 51 (96)
|.-+...++-++-+-+.| -.+..+...+|| +++..+|..+|+++|=.+.
T Consensus 41 ~~kc~~~l~kll~l~~~G~~f~~~e~t~lf~~v~kl~~s~d~~lKrLvYLyl~ 93 (355)
T 3tjz_B 41 PRKCAHILTKILYLINQGEHLGTTEATEAFFAMTKLFQSNDPTLRRMCYLTIK 93 (355)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHGGGGCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCCchhHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 344455666677777777 223334556777 4889999999999997764
No 11
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=49.39 E-value=59 Score=23.47 Aligned_cols=83 Identities=10% Similarity=0.120 Sum_probs=44.8
Q ss_pred chHHHHHHHHHHHHHhCC--C---CChhhhHHHhhhhccCCChhHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHH
Q psy9696 3 KGSSDTFCKALILLRNKG--L---LTPIDLLPLFFGLLRCPDKPLRKFLETHIITDIKNINAKHKNAKLNTTLQNFMYEM 77 (96)
Q Consensus 3 p~lR~~lv~aLilLRnk~--~---i~~~~lL~~~f~Ll~~~dK~LR~~l~~~IvsdIk~~N~k~kn~klNr~lQ~~lf~m 77 (96)
++.|...+.+|--+-... . +-...+++.+++++..+|..+|+.....+.+=....+......-+...+=..+..+
T Consensus 290 ~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~l 369 (450)
T 2jdq_A 290 ESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDL 369 (450)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHG
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHH
Confidence 566777777665553211 0 00135788889999888888888755544433332121111111222233456777
Q ss_pred hccCCHHH
Q psy9696 78 LKDSNHRA 85 (96)
Q Consensus 78 l~d~~~~~ 85 (96)
++++++..
T Consensus 370 l~~~~~~v 377 (450)
T 2jdq_A 370 LTVMDSKI 377 (450)
T ss_dssp GGSSCHHH
T ss_pred hcCCCHHH
Confidence 87776543
No 12
>2doe_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=43.40 E-value=49 Score=20.37 Aligned_cols=43 Identities=19% Similarity=0.153 Sum_probs=35.8
Q ss_pred HHHHHhCCCCChhhhHHHhhhhcc-------CCChhHHHHHHHHHHHHHHH
Q psy9696 13 LILLRNKGLLTPIDLLPLFFGLLR-------CPDKPLRKFLETHIITDIKN 56 (96)
Q Consensus 13 LilLRnk~~i~~~~lL~~~f~Ll~-------~~dK~LR~~l~~~IvsdIk~ 56 (96)
.-||+.++ |++..--...-+++. +.+-.-|+.+|..-|.+++.
T Consensus 24 ~~mL~e~~-I~~~s~W~~~~~~i~~Dpry~av~~~~eRe~lF~eYi~~l~~ 73 (83)
T 2doe_A 24 FELLSNHH-LDSQSRWSKVKDKVESDPRYKAVDSSSMREDLFKQYIEKIAK 73 (83)
T ss_dssp HHHHHHTT-CCTTCCHHHHHHHHTTSTHHHHCCCHHHHHHHHHHHHHHHHS
T ss_pred HHHHhhCC-CCCCCcHHHHHHHHccCHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 35889999 999988888888875 56678999999999988864
No 13
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=43.14 E-value=85 Score=22.13 Aligned_cols=83 Identities=10% Similarity=0.071 Sum_probs=54.9
Q ss_pred chHHHHHHHHHHHHHh-C--CCC-C-hhhhHHHhhhhccCCChhHHHHHHHHHHHHHHHHhhh-hhhhHHH-HHHHHHHH
Q psy9696 3 KGSSDTFCKALILLRN-K--GLL-T-PIDLLPLFFGLLRCPDKPLRKFLETHIITDIKNINAK-HKNAKLN-TTLQNFMY 75 (96)
Q Consensus 3 p~lR~~lv~aLilLRn-k--~~i-~-~~~lL~~~f~Ll~~~dK~LR~~l~~~IvsdIk~~N~k-~kn~klN-r~lQ~~lf 75 (96)
+..|.+...||.-+-. - ... + +.++++-+|+.+......+|....+.|.+-+...... .+=.+.= ..+-..+.
T Consensus 118 ~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~ 197 (249)
T 2qk1_A 118 PSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVI 197 (249)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHH
Confidence 4566777776655443 2 122 2 6689999999998888999999999999999876531 1111222 34555667
Q ss_pred HHhccCCHHH
Q psy9696 76 EMLKDSNHRA 85 (96)
Q Consensus 76 ~ml~d~~~~~ 85 (96)
..+.|+++.+
T Consensus 198 ~~l~D~~~~V 207 (249)
T 2qk1_A 198 QIVNDTQPAI 207 (249)
T ss_dssp HHHTCSSHHH
T ss_pred HHhcCCCHHH
Confidence 7778887643
No 14
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=42.13 E-value=70 Score=20.89 Aligned_cols=91 Identities=10% Similarity=0.080 Sum_probs=49.0
Q ss_pred CchHHHHHHHHHHHHHhCC-----CCChhhhHHHhhhhccCCChhHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHH
Q psy9696 2 AKGSSDTFCKALILLRNKG-----LLTPIDLLPLFFGLLRCPDKPLRKFLETHIITDIKNINAKHKNAKLNTTLQNFMYE 76 (96)
Q Consensus 2 ~p~lR~~lv~aLilLRnk~-----~i~~~~lL~~~f~Ll~~~dK~LR~~l~~~IvsdIk~~N~k~kn~klNr~lQ~~lf~ 76 (96)
+|+.|...+.+|--+-... .+-....++.+.+++..+|..+|......+-+=.. .+...+..-...-+=..+..
T Consensus 141 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~-~~~~~~~~l~~~~~i~~L~~ 219 (252)
T 4hxt_A 141 DSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIAS-GPTSAIKAIVDAGGVEVLQK 219 (252)
T ss_dssp CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTT-SBHHHHHHHHHTTHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHc-CCHHHHHHHHHCCCHHHHHH
Confidence 3566777777776554321 11113478999999998888777766554433221 11111111112222345677
Q ss_pred HhccCCHHHHHHHHHHh
Q psy9696 77 MLKDSNHRAAKMSLSIM 93 (96)
Q Consensus 77 ml~d~~~~~Ak~al~v~ 93 (96)
+++++++.....|+.++
T Consensus 220 ll~~~~~~v~~~a~~~L 236 (252)
T 4hxt_A 220 LLTSTDSEVQKEAQRAL 236 (252)
T ss_dssp GGGCSCHHHHHHHHHHH
T ss_pred HHCCCcHHHHHHHHHHH
Confidence 78887775555554443
No 15
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=39.66 E-value=1.2e+02 Score=23.04 Aligned_cols=68 Identities=18% Similarity=0.137 Sum_probs=45.9
Q ss_pred hhHHHhhhhccCCChhHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhccCCHHHHHHHHHHhh
Q psy9696 26 DLLPLFFGLLRCPDKPLRKFLETHIITDIKNINAKHKNAKLNTTLQNFMYEMLKDSNHRAAKMSLSIMV 94 (96)
Q Consensus 26 ~lL~~~f~Ll~~~dK~LR~~l~~~IvsdIk~~N~k~kn~klNr~lQ~~lf~ml~d~~~~~Ak~al~v~~ 94 (96)
+-+.++++|+.-.|...+--.+..|=.=||.++.+-+-..+-+.+-.+ -+.++++++..|.+|+.++.
T Consensus 33 ~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~i-I~llk~~dEkval~A~r~L~ 100 (265)
T 3b2a_A 33 RALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVF-INALSQENEKVTIKALRALG 100 (265)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH-HHTCCSTTHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHH-HHHHhccchhHHHHHHHHHH
Confidence 467788899988777887777776767778877665544333333333 23447778888888877764
No 16
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=38.30 E-value=56 Score=24.85 Aligned_cols=83 Identities=7% Similarity=0.061 Sum_probs=45.8
Q ss_pred CchHHHHHHHHHHHHHhC-----CCCChhhhHHHhhhhccCCChhHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHH
Q psy9696 2 AKGSSDTFCKALILLRNK-----GLLTPIDLLPLFFGLLRCPDKPLRKFLETHIITDIKNINAKHKNAKLNTTLQNFMYE 76 (96)
Q Consensus 2 ~p~lR~~lv~aLilLRnk-----~~i~~~~lL~~~f~Ll~~~dK~LR~~l~~~IvsdIk~~N~k~kn~klNr~lQ~~lf~ 76 (96)
+++.|...+.+|--+-.. +.+-....++.+..++.-.|..+|......+.+=.+..+...........++ .+..
T Consensus 186 ~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~-~L~~ 264 (530)
T 1wa5_B 186 SVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALP-TLAK 264 (530)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHH-HHHH
T ss_pred CHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHH-HHHH
Confidence 467788777777766432 1222235788888888778888877665544433322211111122223333 4566
Q ss_pred HhccCCHHH
Q psy9696 77 MLKDSNHRA 85 (96)
Q Consensus 77 ml~d~~~~~ 85 (96)
++.++++..
T Consensus 265 lL~~~d~~v 273 (530)
T 1wa5_B 265 LIYSMDTET 273 (530)
T ss_dssp HTTCCCHHH
T ss_pred HHcCCCHHH
Confidence 777766533
No 17
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=37.48 E-value=1.5e+02 Score=23.29 Aligned_cols=77 Identities=19% Similarity=0.169 Sum_probs=50.1
Q ss_pred HHHHHHhCCCCChhhhHHHhhhhccCCChhHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhccCCHHHHHHHHH
Q psy9696 12 ALILLRNKGLLTPIDLLPLFFGLLRCPDKPLRKFLETHIITDIKNINAKHKNAKLNTTLQNFMYEMLKDSNHRAAKMSLS 91 (96)
Q Consensus 12 aLilLRnk~~i~~~~lL~~~f~Ll~~~dK~LR~~l~~~IvsdIk~~N~k~kn~klNr~lQ~~lf~ml~d~~~~~Ak~al~ 91 (96)
+=-++-+++---..++++-++++..-++-.+|+++-.+|=.- -++ +.+-+.+.+.+ +..++.|+++.+.|.+..
T Consensus 49 ~~EL~l~~dpsLl~~fl~~il~f~~d~~~~vRk~~a~FieEa----~~~-~~el~~~~l~~-L~~LL~d~d~~V~K~~I~ 122 (386)
T 3o2t_A 49 VQELIINKDPTLLDNFLDEIIAFQADKSIEVRKFVIGFIEEA----CKR-DIELLLKLIAN-LNMLLRDENVNVVKKAIL 122 (386)
T ss_dssp HHHHHHTTCGGGGGGGHHHHHGGGGCSCHHHHHHHHHHHHHH----HHH-CGGGHHHHHHH-HHHHHTCSSHHHHHHHHH
T ss_pred HHHHHhccCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHH----HHH-HHHHHHHHHHH-HHHHHcCCCHHHHHHHHH
Confidence 333444555433445566666666666788999887777433 333 44557777774 577788989999999887
Q ss_pred Hhh
Q psy9696 92 IMV 94 (96)
Q Consensus 92 v~~ 94 (96)
.+.
T Consensus 123 ~~t 125 (386)
T 3o2t_A 123 TMT 125 (386)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
No 18
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=36.23 E-value=1.4e+02 Score=22.60 Aligned_cols=56 Identities=16% Similarity=0.129 Sum_probs=37.6
Q ss_pred CchHHHHHHHHHHHHHhCCC--------CChhhhHHHhhhhccCCChhHHHHHHHHHHHHHHHH
Q psy9696 2 AKGSSDTFCKALILLRNKGL--------LTPIDLLPLFFGLLRCPDKPLRKFLETHIITDIKNI 57 (96)
Q Consensus 2 ~p~lR~~lv~aLilLRnk~~--------i~~~~lL~~~f~Ll~~~dK~LR~~l~~~IvsdIk~~ 57 (96)
+++.|...+.+|--+-..+- +-....++.+..++...|..+|......+.+=+...
T Consensus 396 ~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~ 459 (530)
T 1wa5_B 396 EYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMG 459 (530)
T ss_dssp CHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhh
Confidence 46778888888776643321 112348889999999999999987766665555433
No 19
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=36.04 E-value=1.6e+02 Score=23.16 Aligned_cols=49 Identities=16% Similarity=0.205 Sum_probs=37.0
Q ss_pred chHHHHHHHHHHHHHhCCCCChhhhHHHhhhhccCCChhHHHHHHHHHHH
Q psy9696 3 KGSSDTFCKALILLRNKGLLTPIDLLPLFFGLLRCPDKPLRKFLETHIIT 52 (96)
Q Consensus 3 p~lR~~lv~aLilLRnk~~i~~~~lL~~~f~Ll~~~dK~LR~~l~~~Ivs 52 (96)
++.|...++-++-+-..|. +...++.-..+++..+|..+|+..|-.+..
T Consensus 27 ~~~k~~~~~kli~~~~~G~-d~~~~~~~vi~l~~s~~~~~Krl~yl~l~~ 75 (591)
T 2vgl_B 27 KEKRKEAVKKVIAAMTVGK-DVSSLFPDVVNCMQTDNLELKKLVYLYLMN 75 (591)
T ss_dssp HHHHHHHHHHHHHHHHTTC-CCGGGHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCC-ChHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 3456666777777777786 556667777788889999999999877654
No 20
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=34.69 E-value=94 Score=20.20 Aligned_cols=38 Identities=13% Similarity=-0.053 Sum_probs=18.0
Q ss_pred chHHHHHHHHHHHHHhCCCCChhhhHHHhhhhccCCChhHHHHH
Q psy9696 3 KGSSDTFCKALILLRNKGLLTPIDLLPLFFGLLRCPDKPLRKFL 46 (96)
Q Consensus 3 p~lR~~lv~aLilLRnk~~i~~~~lL~~~f~Ll~~~dK~LR~~l 46 (96)
|+.|...+.+|--+.+ .+.++.+.+++.-+|..+|...
T Consensus 95 ~~vr~~a~~aL~~~~~------~~~~~~L~~~l~d~~~~vr~~a 132 (211)
T 3ltm_A 95 GWVRQSAAVALGQIGD------ERAVEPLIKALKDEDWFVRIAA 132 (211)
T ss_dssp HHHHHHHHHHHHHHCC------GGGHHHHHHHTTCSSHHHHHHH
T ss_pred HHHHHHHHHHHHHhCc------HHHHHHHHHHHhCCCHHHHHHH
Confidence 4455555555554432 2344445555554555444433
No 21
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=34.10 E-value=94 Score=20.02 Aligned_cols=38 Identities=13% Similarity=-0.053 Sum_probs=20.1
Q ss_pred chHHHHHHHHHHHHHhCCCCChhhhHHHhhhhccCCChhHHHHH
Q psy9696 3 KGSSDTFCKALILLRNKGLLTPIDLLPLFFGLLRCPDKPLRKFL 46 (96)
Q Consensus 3 p~lR~~lv~aLilLRnk~~i~~~~lL~~~f~Ll~~~dK~LR~~l 46 (96)
|+.|...+.+|--+.+ .+.++.+.+++.-+|..+|...
T Consensus 90 ~~vr~~a~~aL~~~~~------~~~~~~L~~~l~d~~~~vr~~a 127 (201)
T 3ltj_A 90 GWVRQSAAVALGQIGD------ERAVEPLIKALKDEDWFVRIAA 127 (201)
T ss_dssp HHHHHHHHHHHHHHCC------GGGHHHHHHHTTCSSHHHHHHH
T ss_pred HHHHHHHHHHHHHhCc------HHHHHHHHHHHcCCCHHHHHHH
Confidence 4556666666655432 2345555555555555555544
No 22
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=32.07 E-value=1.1e+02 Score=19.95 Aligned_cols=12 Identities=25% Similarity=0.362 Sum_probs=5.8
Q ss_pred HHHHhccCCHHH
Q psy9696 74 MYEMLKDSNHRA 85 (96)
Q Consensus 74 lf~ml~d~~~~~ 85 (96)
+..+++|+++.+
T Consensus 117 L~~~l~d~~~~v 128 (211)
T 3ltm_A 117 LIKALKDEDWFV 128 (211)
T ss_dssp HHHHTTCSSHHH
T ss_pred HHHHHhCCCHHH
Confidence 344555555533
No 23
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=29.07 E-value=2.3e+02 Score=22.91 Aligned_cols=89 Identities=10% Similarity=0.092 Sum_probs=54.0
Q ss_pred CchHHHHHHHHHHHHHhCC---C-CChhhhHHHhhhhccCCChhHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHH
Q psy9696 2 AKGSSDTFCKALILLRNKG---L-LTPIDLLPLFFGLLRCPDKPLRKFLETHIITDIKNINAKHKNAKLNTTLQNFMYEM 77 (96)
Q Consensus 2 ~p~lR~~lv~aLilLRnk~---~-i~~~~lL~~~f~Ll~~~dK~LR~~l~~~IvsdIk~~N~k~kn~klNr~lQ~~lf~m 77 (96)
+++.|..-+++|.-+-... + -...++++.++++..-+|..+|+..+..+..=.+..-..-+.+ +. .+-.++...
T Consensus 187 ~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~-l~-~l~~~l~~~ 264 (852)
T 4fdd_A 187 SPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPH-MH-NIVEYMLQR 264 (852)
T ss_dssp SHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGG-HH-HHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHH-HH-HHHHHHHHH
Confidence 4678888888875322110 0 0112678888888888889999988888765555332221211 33 355566677
Q ss_pred hccCCHHHHHHHHHH
Q psy9696 78 LKDSNHRAAKMSLSI 92 (96)
Q Consensus 78 l~d~~~~~Ak~al~v 92 (96)
++++++.....|+..
T Consensus 265 ~~~~~~~vr~~a~e~ 279 (852)
T 4fdd_A 265 TQDQDENVALEACEF 279 (852)
T ss_dssp HTCSSHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHH
Confidence 788777665555543
No 24
>2ahm_E Replicase NSP8, replicase polyprotein 1AB, heavy chain; SARS-COV, non-structural protein, S complex, hexadecamer, viral protein, replication; 2.40A {Sars coronavirus} SCOP: d.302.1.1
Probab=26.18 E-value=34 Score=25.20 Aligned_cols=19 Identities=32% Similarity=0.709 Sum_probs=15.8
Q ss_pred hhhHHHHHHHHHHHHHhcc
Q psy9696 62 KNAKLNTTLQNFMYEMLKD 80 (96)
Q Consensus 62 kn~klNr~lQ~~lf~ml~d 80 (96)
|-.|+=.++|+.||+||+.
T Consensus 84 rksKvvSam~~mLF~Mlrk 102 (203)
T 2ahm_E 84 KRAKVTSAMQTMLFTMLRK 102 (203)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 3467889999999999965
No 25
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=25.55 E-value=1.5e+02 Score=23.64 Aligned_cols=88 Identities=9% Similarity=0.059 Sum_probs=0.0
Q ss_pred CchHHHHHHHHHHHHHhCCCCChhhhHHHhhhhccCCChhHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhcc-
Q psy9696 2 AKGSSDTFCKALILLRNKGLLTPIDLLPLFFGLLRCPDKPLRKFLETHIITDIKNINAKHKNAKLNTTLQNFMYEMLKD- 80 (96)
Q Consensus 2 ~p~lR~~lv~aLilLRnk~~i~~~~lL~~~f~Ll~~~dK~LR~~l~~~IvsdIk~~N~k~kn~klNr~lQ~~lf~ml~d- 80 (96)
++|.|...++++.-+-.|--=+....++.++++++..+...+..+...+..-++ ++..+-...=.-++..+.+
T Consensus 398 d~e~r~~~v~~I~~la~k~~~~~~~~v~~ll~lL~~~~~~v~~~~~~~l~~ii~------~~p~l~~~~v~~L~~~l~~~ 471 (618)
T 1w63_A 398 EPEFKADCASGIFLAAEKYAPSKRWHIDTIMRVLTTAGSYVRDDAVPNLIQLIT------NSVEMHAYTVQRLYKAILGD 471 (618)
T ss_dssp CHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTGGGSCSSHHHHHHHHHH------HSCSTHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHhccchhHHHHHHHHHHHHh------cChhHHHHHHHHHHHHHhcc
Q ss_pred -CCHHHHHHHHHHhhh
Q psy9696 81 -SNHRAAKMSLSIMVH 95 (96)
Q Consensus 81 -~~~~~Ak~al~v~~e 95 (96)
..+..++.++-++=|
T Consensus 472 ~~~~~~~~~~~wilGE 487 (618)
T 1w63_A 472 YSQQPLVQVAAWCIGE 487 (618)
T ss_dssp CSCSHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHhh
No 26
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=25.54 E-value=1.2e+02 Score=18.52 Aligned_cols=74 Identities=9% Similarity=0.029 Sum_probs=40.5
Q ss_pred CchHHHHHHHHHHHHHhCCCCChhhhHHHhhhhccCCChhHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhccC
Q psy9696 2 AKGSSDTFCKALILLRNKGLLTPIDLLPLFFGLLRCPDKPLRKFLETHIITDIKNINAKHKNAKLNTTLQNFMYEMLKDS 81 (96)
Q Consensus 2 ~p~lR~~lv~aLilLRnk~~i~~~~lL~~~f~Ll~~~dK~LR~~l~~~IvsdIk~~N~k~kn~klNr~lQ~~lf~ml~d~ 81 (96)
+|+.|...+.+|--+.+ ...++.+.+++.-+|..+|...-..+- ++. ....-..+..+++|+
T Consensus 55 ~~~vR~~A~~aL~~~~~------~~a~~~L~~~L~d~~~~VR~~A~~aL~----~~~--------~~~a~~~L~~~l~d~ 116 (131)
T 1te4_A 55 DWRIRGAAAWIIGNFQD------ERAVEPLIKLLEDDSGFVRSGAARSLE----QIG--------GERVRAAMEKLAETG 116 (131)
T ss_dssp CHHHHHHHHHHHGGGCS------HHHHHHHHHHHHHCCTHHHHHHHHHHH----HHC--------SHHHHHHHHHHTTSC
T ss_pred CHHHHHHHHHHHHhcCC------HHHHHHHHHHHcCCCHHHHHHHHHHHH----HhC--------cHHHHHHHHHHHhCC
Confidence 35667776666654432 345666666666666777765544432 111 112233456677777
Q ss_pred CHHHHHHHHHHh
Q psy9696 82 NHRAAKMSLSIM 93 (96)
Q Consensus 82 ~~~~Ak~al~v~ 93 (96)
++.+...|...+
T Consensus 117 ~~~vr~~A~~aL 128 (131)
T 1te4_A 117 TGFARKVAVNYL 128 (131)
T ss_dssp CTHHHHHHHHHG
T ss_pred CHHHHHHHHHHH
Confidence 775555555444
No 27
>3ub0_A Non-structural protein 6, NSP6,; feline coronavirus, primer-independen polymerase, replication; 2.60A {Feline infectious peritonitis virus}
Probab=25.54 E-value=32 Score=25.27 Aligned_cols=19 Identities=21% Similarity=0.641 Sum_probs=15.9
Q ss_pred hhhHHHHHHHHHHHHHhcc
Q psy9696 62 KNAKLNTTLQNFMYEMLKD 80 (96)
Q Consensus 62 kn~klNr~lQ~~lf~ml~d 80 (96)
|-.|+=.++|+.||+||+.
T Consensus 83 rksKvvSam~~mLF~Mlrr 101 (199)
T 3ub0_A 83 RKSKIVSAMHSLLFGMLKK 101 (199)
T ss_dssp CCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 3467889999999999965
No 28
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=23.94 E-value=1.5e+02 Score=19.02 Aligned_cols=20 Identities=15% Similarity=0.071 Sum_probs=9.6
Q ss_pred hHHHhhhhccCCChhHHHHH
Q psy9696 27 LLPLFFGLLRCPDKPLRKFL 46 (96)
Q Consensus 27 lL~~~f~Ll~~~dK~LR~~l 46 (96)
.++.+.+++.-+|..+|...
T Consensus 77 ~~~~L~~~l~d~~~~vr~~a 96 (201)
T 3ltj_A 77 AVEPLIKALKDEDGWVRQSA 96 (201)
T ss_dssp GHHHHHHHTTCSSHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHH
Confidence 34444555554555554443
No 29
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=22.91 E-value=2.4e+02 Score=21.11 Aligned_cols=91 Identities=10% Similarity=0.073 Sum_probs=48.2
Q ss_pred CchHHHHHHHHHHHHHhCC-----CCChhhhHHHhhhhccCCChhHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHH
Q psy9696 2 AKGSSDTFCKALILLRNKG-----LLTPIDLLPLFFGLLRCPDKPLRKFLETHIITDIKNINAKHKNAKLNTTLQNFMYE 76 (96)
Q Consensus 2 ~p~lR~~lv~aLilLRnk~-----~i~~~~lL~~~f~Ll~~~dK~LR~~l~~~IvsdIk~~N~k~kn~klNr~lQ~~lf~ 76 (96)
++++|...+.+|--+-..+ .+-...+++.+..++...|..+|......+-+=....+......=....+=..+..
T Consensus 342 ~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~ 421 (528)
T 4b8j_A 342 KKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCD 421 (528)
T ss_dssp CHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHH
T ss_pred cHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHH
Confidence 3566777777766554311 00012567888899988888888876665554443322111111111112234567
Q ss_pred HhccCCHHHHHHHHHH
Q psy9696 77 MLKDSNHRAAKMSLSI 92 (96)
Q Consensus 77 ml~d~~~~~Ak~al~v 92 (96)
++.++++..-..|+..
T Consensus 422 lL~~~d~~v~~~al~~ 437 (528)
T 4b8j_A 422 LLICPDIRIVTVCLEG 437 (528)
T ss_dssp GGGCSCHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHH
Confidence 7777766554444443
No 30
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=22.07 E-value=2.9e+02 Score=21.72 Aligned_cols=47 Identities=4% Similarity=0.020 Sum_probs=32.8
Q ss_pred CchHHHHHHHHHHHHHhCCCC--ChhhhHHHhhhhccCC-ChhHHHHHHH
Q psy9696 2 AKGSSDTFCKALILLRNKGLL--TPIDLLPLFFGLLRCP-DKPLRKFLET 48 (96)
Q Consensus 2 ~p~lR~~lv~aLilLRnk~~i--~~~~lL~~~f~Ll~~~-dK~LR~~l~~ 48 (96)
++..|.++++++--+-..+.- .-.++++.++..+..+ |...|.....
T Consensus 108 ~~~vr~~~~~~l~~i~~~~~p~~~w~~ll~~L~~~l~~~~~~~~r~~al~ 157 (861)
T 2bpt_A 108 EPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLL 157 (861)
T ss_dssp SHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTTSCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHhhCcccccHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 356788888887766554321 2247899999999887 8888876654
No 31
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=20.55 E-value=2.1e+02 Score=19.41 Aligned_cols=20 Identities=25% Similarity=0.426 Sum_probs=10.5
Q ss_pred HHHHHHHhccCCHHHHHHHH
Q psy9696 71 QNFMYEMLKDSNHRAAKMSL 90 (96)
Q Consensus 71 Q~~lf~ml~d~~~~~Ak~al 90 (96)
-..+..+++|+++..-..|.
T Consensus 194 ~~~L~~~l~d~~~~vR~~A~ 213 (280)
T 1oyz_A 194 RDCFVEMLQDKNEEVRIEAI 213 (280)
T ss_dssp HHHHHHHTTCSCHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHH
Confidence 34456666666654433333
No 32
>2jtt_C Calcyclin-binding protein; S100A6, SIAH-1 interacting protein, ubiquitination, E3 ligase complex, beta-catenin, calcium, cell cycle, mitogen; NMR {Mus musculus}
Probab=20.46 E-value=59 Score=17.42 Aligned_cols=13 Identities=23% Similarity=0.217 Sum_probs=10.8
Q ss_pred CchHHHHHHHHHH
Q psy9696 2 AKGSSDTFCKALI 14 (96)
Q Consensus 2 ~p~lR~~lv~aLi 14 (96)
++|+|+++.+|.+
T Consensus 20 ddd~kram~KS~~ 32 (35)
T 2jtt_C 20 DDDMKRTINKAWV 32 (35)
T ss_dssp CSSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHh
Confidence 6899999998864
No 33
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=20.10 E-value=3.4e+02 Score=22.27 Aligned_cols=94 Identities=13% Similarity=0.104 Sum_probs=0.0
Q ss_pred CchHHHHHHHHHHHH----HhCCCCChhhhHHHhhhhccCCChhHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHH
Q psy9696 2 AKGSSDTFCKALILL----RNKGLLTPIDLLPLFFGLLRCPDKPLRKFLETHIITDIKNINAKHKNAKLNTTLQNFMYEM 77 (96)
Q Consensus 2 ~p~lR~~lv~aLilL----Rnk~~i~~~~lL~~~f~Ll~~~dK~LR~~l~~~IvsdIk~~N~k~kn~klNr~lQ~~lf~m 77 (96)
+++.|..-+++|--| .|+..|.....++.+.+++..++..+|......+.+-...-....+--.-...++.+ ..+
T Consensus 206 d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~L-v~l 284 (780)
T 2z6g_A 206 DVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKM-VAL 284 (780)
T ss_dssp CHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHH-HHG
T ss_pred CHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHH-HHH
Q ss_pred hccCCHHHHHHHHHHhhhC
Q psy9696 78 LKDSNHRAAKMSLSIMVHL 96 (96)
Q Consensus 78 l~d~~~~~Ak~al~v~~eL 96 (96)
++++++..-..|..++.-|
T Consensus 285 L~~~~~~v~~~a~~aL~~L 303 (780)
T 2z6g_A 285 LNKTNVKFLAITTDCLQIL 303 (780)
T ss_dssp GGCCCHHHHHHHHHHHHHH
T ss_pred HhcCCHHHHHHHHHHHHHH
Done!