RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy9696
         (96 letters)



>gnl|CDD|191954 pfam08158, NUC130_3NT, NUC130/3NT domain.  This N terminal domain
          is found in a novel nucleolar protein family.
          Length = 52

 Score = 27.9 bits (63), Expect = 0.22
 Identities = 9/16 (56%), Positives = 12/16 (75%)

Query: 7  DTFCKALILLRNKGLL 22
          +   K+LILLRNK L+
Sbjct: 37 EKIVKSLILLRNKDLI 52


>gnl|CDD|239894 cd04447, DEP_BRCC3, DEP (Dishevelled, Egl-10, and Pleckstrin)
          domain found in BBRC3-like proteins. BBRC3, also known
          as DEPDC1B, is a DEP containing protein of unknown
          function.
          Length = 92

 Score = 26.3 bits (58), Expect = 1.4
 Identities = 9/14 (64%), Positives = 12/14 (85%)

Query: 42 LRKFLETHIITDIK 55
          L+KFL+ H+I DIK
Sbjct: 62 LKKFLKNHVIEDIK 75


>gnl|CDD|236757 PRK10767, PRK10767, chaperone protein DnaJ; Provisional.
          Length = 371

 Score = 26.6 bits (60), Expect = 1.9
 Identities = 7/12 (58%), Positives = 8/12 (66%)

Query: 75 YEMLKDSNHRAA 86
          YE+L D   RAA
Sbjct: 54 YEVLSDPQKRAA 65


>gnl|CDD|222023 pfam13281, DUF4071, Domain of unknown function (DUF4071).  This
          domain is found at the N-terminus of many
          serine-threonine kinase-like proteins.
          Length = 365

 Score = 26.5 bits (59), Expect = 1.9
 Identities = 10/41 (24%), Positives = 20/41 (48%), Gaps = 2/41 (4%)

Query: 49 HIITDIKNINAKHKNAKLNTTLQNFMYEMLKD--SNHRAAK 87
          ++     N+  + + A+L T L + +Y++LK       A K
Sbjct: 53 NLADSRANLAERLQLARLLTPLDSRLYQLLKGVPIQSSAHK 93


>gnl|CDD|233994 TIGR02746, TraC-F-type, type-IV secretion system protein TraC.  The
           protein family described here is common among the F, P
           and I-like type IV secretion systems. Gene symbols
           include TraC (F-type), TrbE/VirB4 (P-type) and TraU
           (I-type). The protein conyains the Walker A and B motifs
           and so is a putative nucleotide triphosphatase.
          Length = 797

 Score = 26.9 bits (60), Expect = 1.9
 Identities = 10/66 (15%), Positives = 26/66 (39%), Gaps = 1/66 (1%)

Query: 25  IDLLPLFFGLLRCPDKPLRKFLETHIITDIKNINAKHKNAKLNTTLQNFMYEML-KDSNH 83
           ID +     L+  P+  L     + +   I     ++ N    T +Q+ + ++   +++ 
Sbjct: 507 IDQITALIALMASPEGGLSDEQRSTLEEAILAAWKEYGNEATITDVQDALQQLEDDENDP 566

Query: 84  RAAKMS 89
           R   + 
Sbjct: 567 RIKDLG 572


>gnl|CDD|215597 PLN03137, PLN03137, ATP-dependent DNA helicase; Q4-like;
           Provisional.
          Length = 1195

 Score = 24.9 bits (54), Expect = 8.4
 Identities = 24/87 (27%), Positives = 37/87 (42%), Gaps = 7/87 (8%)

Query: 13  LILLRNKGLLTPIDLLPLFFGLLRCPDKPLRKF---LETHIITDIKNINAKHKNAKLNTT 69
           L+ + N+ L    DL P     LR     L+K    LE HI    ++   +      +T 
Sbjct: 300 LLAISNELLDNAADLSPDQVEQLRQDRLQLKKQIQQLEIHI----RDKERQKSQFSASTA 355

Query: 70  LQNFMYEMLKDSNHRAAKMSLSIMVHL 96
            +NF YE  + +N++   M     VHL
Sbjct: 356 TRNFQYETPQSTNYKIDPMQTDAQVHL 382


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.325    0.138    0.404 

Gapped
Lambda     K      H
   0.267   0.0718    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,638,467
Number of extensions: 381147
Number of successful extensions: 442
Number of sequences better than 10.0: 1
Number of HSP's gapped: 442
Number of HSP's successfully gapped: 12
Length of query: 96
Length of database: 10,937,602
Length adjustment: 63
Effective length of query: 33
Effective length of database: 8,143,300
Effective search space: 268728900
Effective search space used: 268728900
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (24.2 bits)