RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy9696
         (96 letters)



>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 40.2 bits (93), Expect = 3e-05
 Identities = 26/126 (20%), Positives = 43/126 (34%), Gaps = 43/126 (34%)

Query: 7   DTF---CKALILLRNKGL--------------------LTPIDLLPLFFGLLRCPDK--- 40
           + F   CK L+  R K +                    LTP ++  L    L C  +   
Sbjct: 260 NAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLP 319

Query: 41  -------PLR-----KFLETHIITDIKNINAKHKNA-KLNTTLQNFMYEMLKDSNHRAAK 87
                  P R     + +   + T   N   KH N  KL T +++    +L+ + +R   
Sbjct: 320 REVLTTNPRRLSIIAESIRDGLAT-WDNW--KHVNCDKLTTIIESS-LNVLEPAEYRKMF 375

Query: 88  MSLSIM 93
             LS+ 
Sbjct: 376 DRLSVF 381



 Score = 28.3 bits (62), Expect = 0.35
 Identities = 14/66 (21%), Positives = 31/66 (46%), Gaps = 4/66 (6%)

Query: 30  LFFGLLRCPDKPLRKFLETHIITD----IKNINAKHKNAKLNTTLQNFMYEMLKDSNHRA 85
           LF+ LL   ++ ++KF+E  +  +    +  I  + +   + T +     + L + N   
Sbjct: 67  LFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVF 126

Query: 86  AKMSLS 91
           AK ++S
Sbjct: 127 AKYNVS 132


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 30.4 bits (68), Expect = 0.061
 Identities = 18/87 (20%), Positives = 31/87 (35%), Gaps = 22/87 (25%)

Query: 21  LLTPIDLLPL-------FFGLLRCP-------DKP------LRKFLETHIITDIKNINAK 60
           LL P     +       F  +L  P       D+P      + KFL  ++ + ++     
Sbjct: 20  LLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLG-YVSSLVEPSKVG 78

Query: 61  HKNAKLNTTLQNFMYEMLKDSN-HRAA 86
             +  LN  L  F    L+ ++ H  A
Sbjct: 79  QFDQVLNLCLTEFENCYLEGNDIHALA 105


>1x38_A Beta-D-glucan exohydrolase isoenzyme EXOI; 2-domain fold,
           ligand-protein complex; HET: NAG BMA FUC MAN IDD GOL;
           1.70A {Hordeum vulgare} SCOP: c.1.8.7 c.23.11.1 PDB:
           1lq2_A* 1x39_A* 1ex1_A* 1ieq_A* 1iev_A* 1iew_A* 1iex_A*
           1j8v_A*
          Length = 602

 Score = 26.4 bits (59), Expect = 1.6
 Identities = 10/20 (50%), Positives = 13/20 (65%)

Query: 11  KALILLRNKGLLTPIDLLPL 30
           K+L+LL+N    T   LLPL
Sbjct: 387 KSLVLLKNGKTSTDAPLLPL 406


>1jqo_A Phosphoenolpyruvate carboxylase; beta barrel, carbon dioxide
           fixation, lyase; 3.00A {Zea mays} SCOP: c.1.12.3
          Length = 970

 Score = 25.6 bits (56), Expect = 3.6
 Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 1/31 (3%)

Query: 1   MAKGSSDTFCKALILLRNKGLLTPIDLLPLF 31
           MA   SD      +L R  G+  P+ ++PLF
Sbjct: 536 MATAPSDVLA-VELLQRECGVRQPLPVVPLF 565


>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc
          binuclear cluster, zinc finger, DNA-binding protein;
          2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
          Length = 116

 Score = 24.5 bits (53), Expect = 6.0
 Identities = 13/43 (30%), Positives = 16/43 (37%), Gaps = 2/43 (4%)

Query: 8  TFCKALIL--LRNKGLLTPIDLLPLFFGLLRCPDKPLRKFLET 48
           FC+  IL  L+  G   P    P F   L  P K     L +
Sbjct: 44 LFCRICILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLNILNS 86


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.325    0.138    0.404 

Gapped
Lambda     K      H
   0.267   0.0569    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,324,398
Number of extensions: 65015
Number of successful extensions: 168
Number of sequences better than 10.0: 1
Number of HSP's gapped: 166
Number of HSP's successfully gapped: 11
Length of query: 96
Length of database: 6,701,793
Length adjustment: 62
Effective length of query: 34
Effective length of database: 4,970,691
Effective search space: 169003494
Effective search space used: 169003494
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (23.8 bits)