BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9697
(128 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6B860|RT14_BOVIN 28S ribosomal protein S14, mitochondrial OS=Bos taurus GN=MRPS14
PE=1 SV=1
Length = 128
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 40/80 (50%), Positives = 55/80 (68%), Gaps = 6/80 (7%)
Query: 55 DNKIGLGTFKPNEVM------AAREDATNHPRDSHPCRTQPRCVITSRPRGVVLRWRLSR 108
D ++ + + + N ++ A E+ PRDS P R + RCV+TSRPRGV RWRLSR
Sbjct: 49 DERLRINSLRKNTILPKHLQEVADEEIAALPRDSCPVRIRNRCVMTSRPRGVKRRWRLSR 108
Query: 109 IMFRHLADYNKLSGVQRAMW 128
I+FRHLAD+ +LSG+QRA+W
Sbjct: 109 IVFRHLADHGQLSGIQRAIW 128
>sp|O60783|RT14_HUMAN 28S ribosomal protein S14, mitochondrial OS=Homo sapiens GN=MRPS14
PE=1 SV=1
Length = 128
Score = 83.2 bits (204), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 40/80 (50%), Positives = 54/80 (67%), Gaps = 6/80 (7%)
Query: 55 DNKIGLGTFKPNEVM------AAREDATNHPRDSHPCRTQPRCVITSRPRGVVLRWRLSR 108
D ++ + + + N ++ A E+ PRDS P R + RCV+TSRPRGV RWRLSR
Sbjct: 49 DERLRINSLRKNTILPKILQDVADEEIAALPRDSCPVRIRNRCVMTSRPRGVKRRWRLSR 108
Query: 109 IMFRHLADYNKLSGVQRAMW 128
I+FRHLAD+ +LSG+QRA W
Sbjct: 109 IVFRHLADHGQLSGIQRATW 128
>sp|Q9CR88|RT14_MOUSE 28S ribosomal protein S14, mitochondrial OS=Mus musculus GN=Mrps14
PE=2 SV=1
Length = 128
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/80 (50%), Positives = 54/80 (67%), Gaps = 6/80 (7%)
Query: 55 DNKIGLGTFKPNEVM------AAREDATNHPRDSHPCRTQPRCVITSRPRGVVLRWRLSR 108
D ++ + + + N ++ A ++ PRDS P R + RCV+TSRPRGV RWRLSR
Sbjct: 49 DERLRINSLRKNTILPKDLQEMAGDEIAALPRDSCPVRIRNRCVMTSRPRGVKRRWRLSR 108
Query: 109 IMFRHLADYNKLSGVQRAMW 128
I+FRHLAD+ LSGVQRA+W
Sbjct: 109 IVFRHLADHGLLSGVQRAIW 128
>sp|A7Z2Q4|RS14_BACA2 30S ribosomal protein S14 OS=Bacillus amyloliquefaciens (strain
FZB42) GN=rpsN PE=3 SV=1
Length = 89
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 36/56 (64%)
Query: 73 EDATNHPRDSHPCRTQPRCVITSRPRGVVLRWRLSRIMFRHLADYNKLSGVQRAMW 128
E + PRDS P R RC +T RPRG + +++LSRI FR LA ++ GV++A W
Sbjct: 34 EALSKLPRDSAPARLHNRCTVTGRPRGYMRKFKLSRIAFRELAHKGRIPGVKKASW 89
>sp|B3EP48|RS14_CHLPB 30S ribosomal protein S14 OS=Chlorobium phaeobacteroides (strain
BS1) GN=rpsN PE=3 SV=1
Length = 89
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 35/56 (62%)
Query: 73 EDATNHPRDSHPCRTQPRCVITSRPRGVVLRWRLSRIMFRHLADYNKLSGVQRAMW 128
E + PRDS CR + RCV+T R RGV ++ L R MFR LA KL G+++A W
Sbjct: 34 EALSKLPRDSASCRVRTRCVLTGRGRGVYEKFGLCRQMFRKLALEGKLPGIKKASW 89
>sp|O31587|RS14B_BACSU Alternate 30S ribosomal protein S14 OS=Bacillus subtilis (strain
168) GN=rpsN2 PE=1 SV=1
Length = 89
Score = 55.5 bits (132), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 36/56 (64%)
Query: 73 EDATNHPRDSHPCRTQPRCVITSRPRGVVLRWRLSRIMFRHLADYNKLSGVQRAMW 128
E + PRDS P R RC++T RPR + ++++SRI FR LA ++ GV++A W
Sbjct: 34 EALSKLPRDSAPGRLHNRCMVTGRPRAYMRKFKMSRIAFRELAHKGQIPGVKKASW 89
>sp|Q2GEC6|RS14_NEOSM 30S ribosomal protein S14 OS=Neorickettsia sennetsu (strain
Miyayama) GN=rpsN PE=3 SV=1
Length = 101
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 44/76 (57%), Gaps = 5/76 (6%)
Query: 53 RDDNKIGLGTFKPNEVMAAREDATNHPRDSHPCRTQPRCVITSRPRGVVLRWRLSRIMFR 112
R+D I L E +A + + PR+S P R++ RC IT RPRG ++ +SRI R
Sbjct: 31 RNDKTISL-----KERVAIQAKLNSLPRNSSPARSKNRCSITGRPRGYYRKFGISRIQLR 85
Query: 113 HLADYNKLSGVQRAMW 128
LA++ KL GV ++ W
Sbjct: 86 VLANWGKLPGVVKSSW 101
>sp|P24354|RR14_ASTLO Plastid 30S ribosomal protein S14 OS=Astasia longa GN=rps14 PE=3
SV=1
Length = 100
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 40/80 (50%), Gaps = 5/80 (6%)
Query: 49 FIRKRDDNKIGLGTFKPNEVMAAREDATNHPRDSHPCRTQPRCVITSRPRGVVLRWRLSR 108
FI+K N++ E + PRDS PCR RC +T RPRG + LSR
Sbjct: 26 FIKKEIKNELNFF-----EKIFLNFKLQKFPRDSSPCRLHNRCYLTGRPRGYYRFFGLSR 80
Query: 109 IMFRHLADYNKLSGVQRAMW 128
+FR +A Y L GV ++ W
Sbjct: 81 HIFRDMAHYGLLPGVTKSSW 100
>sp|Q65M53|RS14_BACLD 30S ribosomal protein S14 OS=Bacillus licheniformis (strain DSM 13
/ ATCC 14580) GN=rpsN PE=3 SV=1
Length = 89
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 34/50 (68%)
Query: 79 PRDSHPCRTQPRCVITSRPRGVVLRWRLSRIMFRHLADYNKLSGVQRAMW 128
PRDS P R RC +T RPRG + ++++SRI FR LA ++ GV+++ W
Sbjct: 40 PRDSAPARLHNRCEVTGRPRGYMRKFKMSRIAFRELAYKGQIPGVKKSSW 89
>sp|Q5WAR0|RS14_BACSK 30S ribosomal protein S14 OS=Bacillus clausii (strain KSM-K16)
GN=rpsN PE=3 SV=1
Length = 89
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 32/50 (64%)
Query: 79 PRDSHPCRTQPRCVITSRPRGVVLRWRLSRIMFRHLADYNKLSGVQRAMW 128
PRDS P R RC T RPRGV+ + LSRI FR LA ++ GV++A W
Sbjct: 40 PRDSAPSRLTRRCRKTGRPRGVLRDFELSRIAFRELAHKGQIPGVKKASW 89
>sp|Q64NM1|RS14_BACFR 30S ribosomal protein S14 OS=Bacteroides fragilis (strain YCH46)
GN=rpsN PE=3 SV=1
Length = 99
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 43/80 (53%)
Query: 49 FIRKRDDNKIGLGTFKPNEVMAAREDATNHPRDSHPCRTQPRCVITSRPRGVVLRWRLSR 108
+ KR K + T P E A + P++S+P R RC +T RP+G + ++ +SR
Sbjct: 20 YAEKRAALKQIVRTGDPAEAFEAAQKLQELPKNSNPIRMHNRCKLTGRPKGYIRQFGVSR 79
Query: 109 IMFRHLADYNKLSGVQRAMW 128
I FR +A + GV++A W
Sbjct: 80 IQFREMASNGLIPGVKKASW 99
>sp|Q5L8C2|RS14_BACFN 30S ribosomal protein S14 OS=Bacteroides fragilis (strain ATCC
25285 / NCTC 9343) GN=rpsN PE=3 SV=1
Length = 99
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 43/80 (53%)
Query: 49 FIRKRDDNKIGLGTFKPNEVMAAREDATNHPRDSHPCRTQPRCVITSRPRGVVLRWRLSR 108
+ KR K + T P E A + P++S+P R RC +T RP+G + ++ +SR
Sbjct: 20 YAEKRAALKQIVRTGDPAEAFEAAQKLQELPKNSNPIRMHNRCKLTGRPKGYIRQFGVSR 79
Query: 109 IMFRHLADYNKLSGVQRAMW 128
I FR +A + GV++A W
Sbjct: 80 IQFREMASNGLIPGVKKASW 99
>sp|A8M6L1|RS14_SALAI 30S ribosomal protein S14 OS=Salinispora arenicola (strain CNS-205)
GN=rpsN PE=3 SV=1
Length = 101
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 42/68 (61%), Gaps = 4/68 (5%)
Query: 65 PNEVMAAREDATNH----PRDSHPCRTQPRCVITSRPRGVVLRWRLSRIMFRHLADYNKL 120
P+ ++AR+DA PRDS R + R VI RPRGV+ R+ LSR+ FR +A +L
Sbjct: 34 PDTDLSARDDAVRRLSRLPRDSSRVRLRNRDVIDGRPRGVLSRFGLSRVRFREMALRGEL 93
Query: 121 SGVQRAMW 128
GV++A W
Sbjct: 94 PGVRKASW 101
>sp|A0AJY7|RS14_LISW6 30S ribosomal protein S14 OS=Listeria welshimeri serovar 6b (strain
ATCC 35897 / DSM 20650 / SLCC5334) GN=rpsN PE=3 SV=1
Length = 89
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 34/56 (60%)
Query: 73 EDATNHPRDSHPCRTQPRCVITSRPRGVVLRWRLSRIMFRHLADYNKLSGVQRAMW 128
E+ PRDS P R RC +T RP G + ++ +SRI FR LA +L GV++A W
Sbjct: 34 EELRKLPRDSTPSRLHNRCALTGRPHGYMRKFGMSRIRFRELAHQGQLPGVKKASW 89
>sp|A8FI98|RS14_BACP2 30S ribosomal protein S14 OS=Bacillus pumilus (strain SAFR-032)
GN=rpsN PE=3 SV=1
Length = 89
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 34/50 (68%)
Query: 79 PRDSHPCRTQPRCVITSRPRGVVLRWRLSRIMFRHLADYNKLSGVQRAMW 128
PRDS P R + RC +T RPRG + ++++SRI FR LA + GV+++ W
Sbjct: 40 PRDSSPTRLKNRCELTGRPRGYLRKFKMSRIAFRELAYKGHIPGVKKSSW 89
>sp|Q8A489|RS14_BACTN 30S ribosomal protein S14 OS=Bacteroides thetaiotaomicron (strain
ATCC 29148 / DSM 2079 / NCTC 10582 / E50 / VPI-5482)
GN=rpsN PE=3 SV=1
Length = 99
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 44/80 (55%)
Query: 49 FIRKRDDNKIGLGTFKPNEVMAAREDATNHPRDSHPCRTQPRCVITSRPRGVVLRWRLSR 108
+ KR K + T +P + A + P++S+P R RC +T RP+G + ++ +SR
Sbjct: 20 YAEKRAALKQIVRTGEPADAFEAAQKLQELPKNSNPIRMHNRCKLTGRPKGYIRQFGISR 79
Query: 109 IMFRHLADYNKLSGVQRAMW 128
I FR +A + GV++A W
Sbjct: 80 IQFREMASNGLIPGVKKASW 99
>sp|Q6GH70|RS14_STAAR 30S ribosomal protein S14 OS=Staphylococcus aureus (strain MRSA252)
GN=rpsN PE=3 SV=1
Length = 89
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 33/50 (66%)
Query: 79 PRDSHPCRTQPRCVITSRPRGVVLRWRLSRIMFRHLADYNKLSGVQRAMW 128
PRDS P R RC +T RPRGV+ ++ +SRI FR A ++ GV+++ W
Sbjct: 40 PRDSSPTRLTRRCKVTGRPRGVLRKFEMSRIAFREHAHKGQIPGVKKSSW 89
>sp|Q8CSP8|RS14_STAES 30S ribosomal protein S14 OS=Staphylococcus epidermidis (strain
ATCC 12228) GN=rpsN PE=3 SV=1
Length = 89
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 33/50 (66%)
Query: 79 PRDSHPCRTQPRCVITSRPRGVVLRWRLSRIMFRHLADYNKLSGVQRAMW 128
PRDS P R RC +T RPRGV+ ++ +SRI FR A ++ GV+++ W
Sbjct: 40 PRDSSPTRLTRRCKVTGRPRGVLRKFEMSRIAFREHAHKGQIPGVKKSSW 89
>sp|Q5HPK6|RS14_STAEQ 30S ribosomal protein S14 OS=Staphylococcus epidermidis (strain
ATCC 35984 / RP62A) GN=rpsN PE=3 SV=1
Length = 89
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 33/50 (66%)
Query: 79 PRDSHPCRTQPRCVITSRPRGVVLRWRLSRIMFRHLADYNKLSGVQRAMW 128
PRDS P R RC +T RPRGV+ ++ +SRI FR A ++ GV+++ W
Sbjct: 40 PRDSSPTRLTRRCKVTGRPRGVLRKFEMSRIAFREHAHKGQIPGVKKSSW 89
>sp|P66416|RS14_STAAW 30S ribosomal protein S14 OS=Staphylococcus aureus (strain MW2)
GN=rpsN PE=3 SV=1
Length = 89
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 33/50 (66%)
Query: 79 PRDSHPCRTQPRCVITSRPRGVVLRWRLSRIMFRHLADYNKLSGVQRAMW 128
PRDS P R RC +T RPRGV+ ++ +SRI FR A ++ GV+++ W
Sbjct: 40 PRDSSPTRLTRRCKVTGRPRGVLRKFEMSRIAFREHAHKGQIPGVKKSSW 89
>sp|Q6G9M2|RS14_STAAS 30S ribosomal protein S14 OS=Staphylococcus aureus (strain MSSA476)
GN=rpsN PE=3 SV=1
Length = 89
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 33/50 (66%)
Query: 79 PRDSHPCRTQPRCVITSRPRGVVLRWRLSRIMFRHLADYNKLSGVQRAMW 128
PRDS P R RC +T RPRGV+ ++ +SRI FR A ++ GV+++ W
Sbjct: 40 PRDSSPTRLTRRCKVTGRPRGVLRKFEMSRIAFREHAHKGQIPGVKKSSW 89
>sp|P66415|RS14_STAAN 30S ribosomal protein S14 OS=Staphylococcus aureus (strain N315)
GN=rpsN PE=3 SV=1
Length = 89
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 33/50 (66%)
Query: 79 PRDSHPCRTQPRCVITSRPRGVVLRWRLSRIMFRHLADYNKLSGVQRAMW 128
PRDS P R RC +T RPRGV+ ++ +SRI FR A ++ GV+++ W
Sbjct: 40 PRDSSPTRLTRRCKVTGRPRGVLRKFEMSRIAFREHAHKGQIPGVKKSSW 89
>sp|P66414|RS14_STAAM 30S ribosomal protein S14 OS=Staphylococcus aureus (strain Mu50 /
ATCC 700699) GN=rpsN PE=3 SV=1
Length = 89
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 33/50 (66%)
Query: 79 PRDSHPCRTQPRCVITSRPRGVVLRWRLSRIMFRHLADYNKLSGVQRAMW 128
PRDS P R RC +T RPRGV+ ++ +SRI FR A ++ GV+++ W
Sbjct: 40 PRDSSPTRLTRRCKVTGRPRGVLRKFEMSRIAFREHAHKGQIPGVKKSSW 89
>sp|A6QGN8|RS14_STAAE 30S ribosomal protein S14 OS=Staphylococcus aureus (strain Newman)
GN=rpsN PE=3 SV=1
Length = 89
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 33/50 (66%)
Query: 79 PRDSHPCRTQPRCVITSRPRGVVLRWRLSRIMFRHLADYNKLSGVQRAMW 128
PRDS P R RC +T RPRGV+ ++ +SRI FR A ++ GV+++ W
Sbjct: 40 PRDSSPTRLTRRCKVTGRPRGVLRKFEMSRIAFREHAHKGQIPGVKKSSW 89
>sp|Q5HG84|RS14_STAAC 30S ribosomal protein S14 OS=Staphylococcus aureus (strain COL)
GN=rpsN PE=3 SV=1
Length = 89
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 33/50 (66%)
Query: 79 PRDSHPCRTQPRCVITSRPRGVVLRWRLSRIMFRHLADYNKLSGVQRAMW 128
PRDS P R RC +T RPRGV+ ++ +SRI FR A ++ GV+++ W
Sbjct: 40 PRDSSPTRLTRRCKVTGRPRGVLRKFEMSRIAFREHAHKGQIPGVKKSSW 89
>sp|Q2YXT0|RS14_STAAB 30S ribosomal protein S14 OS=Staphylococcus aureus (strain bovine
RF122 / ET3-1) GN=rpsN PE=3 SV=1
Length = 89
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 33/50 (66%)
Query: 79 PRDSHPCRTQPRCVITSRPRGVVLRWRLSRIMFRHLADYNKLSGVQRAMW 128
PRDS P R RC +T RPRGV+ ++ +SRI FR A ++ GV+++ W
Sbjct: 40 PRDSSPTRLTRRCKVTGRPRGVLRKFEMSRIAFREHAHKGQIPGVKKSSW 89
>sp|A5ISL8|RS14_STAA9 30S ribosomal protein S14 OS=Staphylococcus aureus (strain JH9)
GN=rpsN PE=3 SV=1
Length = 89
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 33/50 (66%)
Query: 79 PRDSHPCRTQPRCVITSRPRGVVLRWRLSRIMFRHLADYNKLSGVQRAMW 128
PRDS P R RC +T RPRGV+ ++ +SRI FR A ++ GV+++ W
Sbjct: 40 PRDSSPTRLTRRCKVTGRPRGVLRKFEMSRIAFREHAHKGQIPGVKKSSW 89
>sp|Q2FYU5|RS14_STAA8 30S ribosomal protein S14 OS=Staphylococcus aureus (strain NCTC
8325) GN=rpsN PE=3 SV=1
Length = 89
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 33/50 (66%)
Query: 79 PRDSHPCRTQPRCVITSRPRGVVLRWRLSRIMFRHLADYNKLSGVQRAMW 128
PRDS P R RC +T RPRGV+ ++ +SRI FR A ++ GV+++ W
Sbjct: 40 PRDSSPTRLTRRCKVTGRPRGVLRKFEMSRIAFREHAHKGQIPGVKKSSW 89
>sp|Q2FH97|RS14_STAA3 30S ribosomal protein S14 OS=Staphylococcus aureus (strain USA300)
GN=rpsN PE=3 SV=1
Length = 89
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 33/50 (66%)
Query: 79 PRDSHPCRTQPRCVITSRPRGVVLRWRLSRIMFRHLADYNKLSGVQRAMW 128
PRDS P R RC +T RPRGV+ ++ +SRI FR A ++ GV+++ W
Sbjct: 40 PRDSSPTRLTRRCKVTGRPRGVLRKFEMSRIAFREHAHKGQIPGVKKSSW 89
>sp|A6U1F6|RS14_STAA2 30S ribosomal protein S14 OS=Staphylococcus aureus (strain JH1)
GN=rpsN PE=3 SV=1
Length = 89
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 33/50 (66%)
Query: 79 PRDSHPCRTQPRCVITSRPRGVVLRWRLSRIMFRHLADYNKLSGVQRAMW 128
PRDS P R RC +T RPRGV+ ++ +SRI FR A ++ GV+++ W
Sbjct: 40 PRDSSPTRLTRRCKVTGRPRGVLRKFEMSRIAFREHAHKGQIPGVKKSSW 89
>sp|A7X1Z0|RS14_STAA1 30S ribosomal protein S14 OS=Staphylococcus aureus (strain Mu3 /
ATCC 700698) GN=rpsN PE=3 SV=1
Length = 89
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 33/50 (66%)
Query: 79 PRDSHPCRTQPRCVITSRPRGVVLRWRLSRIMFRHLADYNKLSGVQRAMW 128
PRDS P R RC +T RPRGV+ ++ +SRI FR A ++ GV+++ W
Sbjct: 40 PRDSSPTRLTRRCKVTGRPRGVLRKFEMSRIAFREHAHKGQIPGVKKSSW 89
>sp|Q4L645|RS14_STAHJ 30S ribosomal protein S14 OS=Staphylococcus haemolyticus (strain
JCSC1435) GN=rpsN PE=3 SV=1
Length = 89
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 33/50 (66%)
Query: 79 PRDSHPCRTQPRCVITSRPRGVVLRWRLSRIMFRHLADYNKLSGVQRAMW 128
PRDS P R RC +T RPRGV+ ++ +SRI FR A ++ GV+++ W
Sbjct: 40 PRDSSPTRLTRRCKVTGRPRGVLRKFEMSRIAFREHAHKGQIPGVKKSSW 89
>sp|A5EX86|RS14_DICNV 30S ribosomal protein S14 OS=Dichelobacter nodosus (strain
VCS1703A) GN=rpsN PE=3 SV=1
Length = 102
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Query: 49 FIRKRDDNKI---GLGTFKPNEVMAAREDATNHPRDSHPCRTQPRCVITSRPRGVVLRWR 105
F KR++ K + T+ E AA+E PR++ P R Q RC IT RP V ++
Sbjct: 20 FAAKREELKEIIRKVATYSDEERAAAQEKLQKLPRNASPSRVQRRCRITGRPHAVYRKFG 79
Query: 106 LSRIMFRHLADYNKLSGVQRAMW 128
LSRI R L ++ GV++A W
Sbjct: 80 LSRIKLRELTMRGEVPGVRKASW 102
>sp|Q1CY73|RS14_MYXXD 30S ribosomal protein S14 OS=Myxococcus xanthus (strain DK 1622)
GN=rpsN PE=3 SV=1
Length = 101
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 46/93 (49%), Gaps = 6/93 (6%)
Query: 36 TLTLWYGGRAYNIFIRKRDDNKIGLGTFKPNEVMAAREDATNHPRDSHPCRTQPRCVITS 95
L Y R + R RD T E AA++ + PRDS+P R RC +T
Sbjct: 15 ALVAKYAKRRAALKARIRDR------TLSYEERRAAQDALASLPRDSNPNRVTNRCALTG 68
Query: 96 RPRGVVLRWRLSRIMFRHLADYNKLSGVQRAMW 128
RPRG + R+ LSRI FR A ++ GV ++ W
Sbjct: 69 RPRGNLRRFGLSRIAFREKALRGEIPGVIKSSW 101
>sp|Q92AC7|RS14_LISIN 30S ribosomal protein S14 OS=Listeria innocua serovar 6a (strain
CLIP 11262) GN=rpsN PE=3 SV=1
Length = 89
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 32/50 (64%)
Query: 79 PRDSHPCRTQPRCVITSRPRGVVLRWRLSRIMFRHLADYNKLSGVQRAMW 128
PRDS P R RC +T RP G + ++ +SRI FR LA +L GV++A W
Sbjct: 40 PRDSSPTRLHNRCELTGRPHGYMRKFGMSRIRFRELAHQGQLPGVKKASW 89
>sp|Q8Y620|RS14_LISMO 30S ribosomal protein S14 OS=Listeria monocytogenes serovar 1/2a
(strain ATCC BAA-679 / EGD-e) GN=rpsN PE=3 SV=1
Length = 89
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 32/50 (64%)
Query: 79 PRDSHPCRTQPRCVITSRPRGVVLRWRLSRIMFRHLADYNKLSGVQRAMW 128
PRDS P R RC +T RP G + ++ +SRI FR LA +L GV++A W
Sbjct: 40 PRDSSPSRLHNRCELTGRPHGYMRKFGMSRIRFRELAHQGQLPGVKKASW 89
>sp|Q8EL00|RS14_OCEIH 30S ribosomal protein S14 OS=Oceanobacillus iheyensis (strain DSM
14371 / JCM 11309 / KCTC 3954 / HTE831) GN=rpsN PE=3
SV=1
Length = 89
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 33/50 (66%)
Query: 79 PRDSHPCRTQPRCVITSRPRGVVLRWRLSRIMFRHLADYNKLSGVQRAMW 128
PRDS P R RC +T RPRG + ++++SRI FR A ++ GV+++ W
Sbjct: 40 PRDSSPTRLTGRCEVTGRPRGYMRQFKMSRIAFREYAHKGQIPGVKKSSW 89
>sp|A0M585|RS14_GRAFK 30S ribosomal protein S14 OS=Gramella forsetii (strain KT0803)
GN=rpsN PE=3 SV=1
Length = 89
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 35/56 (62%)
Query: 73 EDATNHPRDSHPCRTQPRCVITSRPRGVVLRWRLSRIMFRHLADYNKLSGVQRAMW 128
E P++S P R RC +T RP+G + ++ LSR+MFR +A+ + GV++A W
Sbjct: 34 EGLQKLPKNSSPVRLHNRCKLTGRPKGYMRQFGLSRVMFREMANQGLIPGVKKASW 89
>sp|A6KYI2|RS14_BACV8 30S ribosomal protein S14 OS=Bacteroides vulgatus (strain ATCC 8482
/ DSM 1447 / NCTC 11154) GN=rpsN PE=3 SV=1
Length = 99
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 43/80 (53%)
Query: 49 FIRKRDDNKIGLGTFKPNEVMAAREDATNHPRDSHPCRTQPRCVITSRPRGVVLRWRLSR 108
+ KR K + + P E A + P++++P R RC +T RP+G + ++ +SR
Sbjct: 20 YAEKRAALKKIVNSGDPAEAFEAAQKLQAIPKNANPIRLHNRCKLTGRPKGYIRQFGISR 79
Query: 109 IMFRHLADYNKLSGVQRAMW 128
I FR +A + GV++A W
Sbjct: 80 IQFREMASNGLIPGVKKASW 99
>sp|Q2GL46|RS14_ANAPZ 30S ribosomal protein S14 OS=Anaplasma phagocytophilum (strain HZ)
GN=rpsN PE=3 SV=1
Length = 101
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 38/63 (60%)
Query: 66 NEVMAAREDATNHPRDSHPCRTQPRCVITSRPRGVVLRWRLSRIMFRHLADYNKLSGVQR 125
+E AA+ + PRDS R + RC+IT RPRG ++++SRI+ R L ++ G+ +
Sbjct: 39 SERFAAQLKLSKMPRDSSYIRIRNRCLITGRPRGYYRKFKMSRIVLRQLGSIGQIPGLTK 98
Query: 126 AMW 128
+ W
Sbjct: 99 SSW 101
>sp|A4X8U4|RS14_SALTO 30S ribosomal protein S14 OS=Salinispora tropica (strain ATCC
BAA-916 / DSM 44818 / CNB-440) GN=rpsN PE=3 SV=1
Length = 101
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 34/50 (68%)
Query: 79 PRDSHPCRTQPRCVITSRPRGVVLRWRLSRIMFRHLADYNKLSGVQRAMW 128
PRDS P R + R VI RPRGV+ R+ LSR+ FR +A +L G+++A W
Sbjct: 52 PRDSSPVRLRNRDVIDGRPRGVLTRFGLSRVRFREMALRGELPGIRKASW 101
>sp|A4SCS2|RS14_PROVI 30S ribosomal protein S14 OS=Prosthecochloris vibrioformis (strain
DSM 265) GN=rpsN PE=3 SV=1
Length = 89
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 32/50 (64%)
Query: 79 PRDSHPCRTQPRCVITSRPRGVVLRWRLSRIMFRHLADYNKLSGVQRAMW 128
PRDS R + RCV+T R RGV ++ L R MFR LA KL GV++A W
Sbjct: 40 PRDSSASRVRNRCVLTGRGRGVYEKFGLCRHMFRKLALEGKLPGVKKASW 89
>sp|B3EGX7|RS14_CHLL2 30S ribosomal protein S14 OS=Chlorobium limicola (strain DSM 245 /
NBRC 103803) GN=rpsN PE=3 SV=1
Length = 89
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 31/50 (62%)
Query: 79 PRDSHPCRTQPRCVITSRPRGVVLRWRLSRIMFRHLADYNKLSGVQRAMW 128
PRDS R + RCV+T R RGV ++ L R MFR A KL GV++A W
Sbjct: 40 PRDSSATRVKNRCVLTGRGRGVYEKFGLCRQMFRKFALEGKLPGVKKASW 89
>sp|Q71YD4|RS14_LISMF 30S ribosomal protein S14 OS=Listeria monocytogenes serotype 4b
(strain F2365) GN=rpsN PE=3 SV=1
Length = 89
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 31/50 (62%)
Query: 79 PRDSHPCRTQPRCVITSRPRGVVLRWRLSRIMFRHLADYNKLSGVQRAMW 128
PRDS P R RC +T RP G + ++ +SRI FR LA +L GV +A W
Sbjct: 40 PRDSSPSRLHNRCELTGRPHGYMRKFGISRIRFRELAHQGQLPGVTKASW 89
>sp|B4SBW0|RS14_PELPB 30S ribosomal protein S14 OS=Pelodictyon phaeoclathratiforme
(strain DSM 5477 / BU-1) GN=rpsN PE=3 SV=1
Length = 89
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 31/50 (62%)
Query: 79 PRDSHPCRTQPRCVITSRPRGVVLRWRLSRIMFRHLADYNKLSGVQRAMW 128
PRDS R + RCV+T R RGV ++ L R MFR A KL GV++A W
Sbjct: 40 PRDSSATRVRNRCVLTGRGRGVYAKYGLCRHMFRKFALEGKLPGVKKASW 89
>sp|Q9RSL5|RS14_DEIRA 30S ribosomal protein S14 OS=Deinococcus radiodurans (strain ATCC
13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 /
NCIMB 9279 / R1 / VKM B-1422) GN=rpsN PE=3 SV=2
Length = 89
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 32/53 (60%)
Query: 76 TNHPRDSHPCRTQPRCVITSRPRGVVLRWRLSRIMFRHLADYNKLSGVQRAMW 128
T PRD+ P R RC T RPRG V + +SRI+ R +A +L GV++A W
Sbjct: 37 TQLPRDASPTRLHNRCEFTGRPRGYVRFFGVSRIVLREMAHRGELPGVKKASW 89
>sp|Q3B6E9|RS14_PELLD 30S ribosomal protein S14 OS=Pelodictyon luteolum (strain DSM 273)
GN=rpsN PE=3 SV=1
Length = 89
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 32/50 (64%)
Query: 79 PRDSHPCRTQPRCVITSRPRGVVLRWRLSRIMFRHLADYNKLSGVQRAMW 128
PRDS R + RCV+T R RGV ++ L R MFR LA K+ GV++A W
Sbjct: 40 PRDSSATRVRNRCVLTGRGRGVYEKFGLCRHMFRKLALEGKIPGVKKASW 89
>sp|Q255T5|RS14_CHLFF 30S ribosomal protein S14 OS=Chlamydophila felis (strain Fe/C-56)
GN=rpsN PE=3 SV=1
Length = 101
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 36/67 (53%)
Query: 62 TFKPNEVMAAREDATNHPRDSHPCRTQPRCVITSRPRGVVLRWRLSRIMFRHLADYNKLS 121
T E AR RD+ P R RC++T RPRG + ++ +SRI FR +A ++
Sbjct: 35 TASEEEKENARVALNKMKRDTAPIRLHNRCLLTGRPRGYLRKFAISRICFRQMASMGEIP 94
Query: 122 GVQRAMW 128
GV +A W
Sbjct: 95 GVVKASW 101
>sp|Q5L550|RS14_CHLAB 30S ribosomal protein S14 OS=Chlamydophila abortus (strain S26/3)
GN=rpsN PE=3 SV=1
Length = 101
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 36/67 (53%)
Query: 62 TFKPNEVMAAREDATNHPRDSHPCRTQPRCVITSRPRGVVLRWRLSRIMFRHLADYNKLS 121
T E AR RD+ P R RC++T RPRG + ++ +SRI FR +A ++
Sbjct: 35 TASEEEKENARVALNKMKRDTAPIRLHNRCLLTGRPRGYLRKFAISRICFRQMASMGEIP 94
Query: 122 GVQRAMW 128
GV +A W
Sbjct: 95 GVVKASW 101
>sp|Q6MAR9|RS14_PARUW 30S ribosomal protein S14 OS=Protochlamydia amoebophila (strain
UWE25) GN=rpsN PE=3 SV=1
Length = 101
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 35/63 (55%)
Query: 66 NEVMAAREDATNHPRDSHPCRTQPRCVITSRPRGVVLRWRLSRIMFRHLADYNKLSGVQR 125
E AR PRDS P R + RC +T R RG + +++LSR+ FR LA + GV +
Sbjct: 39 EEREQARIALNKMPRDSSPIRLRNRCQMTGRARGFMRKFKLSRLTFRELASMGMIPGVTK 98
Query: 126 AMW 128
+ W
Sbjct: 99 SSW 101
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.325 0.136 0.445
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,742,445
Number of Sequences: 539616
Number of extensions: 1793480
Number of successful extensions: 5485
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 943
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 4535
Number of HSP's gapped (non-prelim): 963
length of query: 128
length of database: 191,569,459
effective HSP length: 94
effective length of query: 34
effective length of database: 140,845,555
effective search space: 4788748870
effective search space used: 4788748870
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)