RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9697
(128 letters)
>3r8n_N 30S ribosomal protein S14; protein biosynthesis, RNA, tRNA,
transfer RNA, 16S ribosomal subunit, RRF; 3.00A
{Escherichia coli} PDB: 1p6g_N 1p87_N 2aw7_N 2avy_N
2i2u_N 2i2p_N* 2qan_N* 2qb9_N* 2qbb_N* 2qbd_N 2qbf_N
2qbh_N* 2qbj_N* 2qou_N* 2qow_N* 2qoy_N* 2qp0_N* 2vho_N
2vhp_N 2ykr_N ...
Length = 100
Score = 57.6 bits (140), Expect = 3e-12
Identities = 22/64 (34%), Positives = 32/64 (50%)
Query: 65 PNEVMAAREDATNHPRDSHPCRTQPRCVITSRPRGVVLRWRLSRIMFRHLADYNKLSGVQ 124
+ A PRDS P R + RC T RP G + ++ LSRI R A ++ G++
Sbjct: 37 DEDRWNAVLKLQTLPRDSSPSRQRNRCRQTGRPHGFLRKFGLSRIKVREAAMRGEIPGLK 96
Query: 125 RAMW 128
+A W
Sbjct: 97 KASW 100
>2eo6_A B-cell linker protein; SH2, cytoplasmic adapter protein, B-cell
adapter containing SH2 domain protein; NMR {Mus
musculus}
Length = 141
Score = 55.3 bits (133), Expect = 5e-11
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 5/60 (8%)
Query: 3 WFH-SVNRERAVQMVAAGG-EGCFLVRPSSS---SEPLTLTLWYGGRAYNIFIRKRDDNK 57
W+ + +R+ A + + +G FL+R SS +P TL ++ R YNI +R + K
Sbjct: 25 WYAGACDRKSAEEALHRSNKDGSFLIRKSSGHDSKQPYTLVAFFNKRVYNIPVRFIEATK 84
>3bbn_N Ribosomal protein S14; small ribosomal subunit, spinach chloroplast
ribosome, ribonucleoprotein particle, macromolecular
complex; 9.40A {Spinacea oleracea}
Length = 100
Score = 54.1 bits (131), Expect = 7e-11
Identities = 18/64 (28%), Positives = 28/64 (43%)
Query: 65 PNEVMAAREDATNHPRDSHPCRTQPRCVITSRPRGVVLRWRLSRIMFRHLADYNKLSGVQ 124
++ + PR+S P R RC +T RPR + + LS + R + L G
Sbjct: 37 LSDKWEIHGKLQSPPRNSAPARLHRRCFLTGRPRANIRDFGLSGHILREMVHTCLLPGAT 96
Query: 125 RAMW 128
R+ W
Sbjct: 97 RSSW 100
>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2,
autoinhibition, ITAM, hydrogen bonding network, TCR
signaling, transferase; HET: ANP; 2.60A {Homo sapiens}
Length = 613
Score = 54.6 bits (131), Expect = 5e-10
Identities = 22/100 (22%), Positives = 38/100 (38%), Gaps = 3/100 (3%)
Query: 3 WFH-SVNRERAVQMVAAGG--EGCFLVRPSSSSEPLTLTLWYGGRAYNIFIRKRDDNKIG 59
W+H S+ RE A + + +G +G FL+RP L+L YG Y+ I + K
Sbjct: 163 WYHSSLTREEAERKLYSGAQTDGKFLLRPRKEQGTYALSLIYGKTVYHYLISQDKAGKYC 222
Query: 60 LGTFKPNEVMAAREDATNHPRDSHPCRTQPRCVITSRPRG 99
+ + + + D + C +S
Sbjct: 223 IPEGTKFDTLWQLVEYLKLKADGLIYCLKEACPNSSASNA 262
Score = 44.6 bits (105), Expect = 2e-06
Identities = 14/61 (22%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Query: 1 MAWFH-SVNRERAVQMVAAGG--EGCFLVRPSSSSE-PLTLTLWYGGRAYNIFIRKRDDN 56
+ +F+ S++R A + + G +G FL+R S L+L + R ++ I ++ +
Sbjct: 8 LPFFYGSISRAEAEEHLKLAGMADGLFLLRQCLRSLGGYVLSLVHDVRFHHFPIERQLNG 67
Query: 57 K 57
Sbjct: 68 T 68
>2cs0_A Hematopoietic SH2 domain containing; ALX, FLJ14886, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: d.93.1.1
Length = 119
Score = 51.9 bits (125), Expect = 7e-10
Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 1 MAWFH-SVNRERAVQMVAAGGEGCFLVRPSSSSEPLTLTLWYGGRAYNIFIRKRDDNK 57
WFH +++RE A ++ + G FL+R S S TL+ + ++ DD
Sbjct: 16 PEWFHGAISREDAENLLESQPLGSFLIRVSHSHVGYTLSYKAQSSCCHFMVKLLDDGT 73
>2iug_A Phosphatidylinositol 3-kinase regulatory alpha subunit;
transferase, polymorphism, UBL conjugation,
phosphorylation, SH2, PI3K, SH2 domain; 1.89A {Homo
sapiens} PDB: 2iuh_A* 2iui_A* 1fu5_A* 1fu6_A 1oo3_A
1oo4_A* 2pna_A 2pnb_A
Length = 120
Score = 51.5 bits (124), Expect = 1e-09
Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
Query: 3 WFH-SVNRERAVQMVAAGGEGCFLVRPSSSSEP--LTLTLWYGGRAYNIFIRKRDDNKIG 59
W+ ++RE + + +G FLVR +S+ TLTL GG I I R D K G
Sbjct: 13 WYWGDISREEVNEKLRDTADGTFLVRDASTKMHGDYTLTLRKGGNNKLIKIFHR-DGKYG 71
Query: 60 LGT 62
Sbjct: 72 FSD 74
>2ecd_A Tyrosine-protein kinase ABL2; SH2 domain, phosphotyrosine binding
domain, protein tyrosine kinase, signal transduction,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 119
Score = 51.5 bits (124), Expect = 1e-09
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Query: 1 MAWFH-SVNRERAVQMVAAGGEGCFLVRPSSSSE-PLTLTLWYGGRAYNIFIRKRDDNK 57
+W+H V+R A ++++ G FLVR S SS L+++L Y GR Y+ I D K
Sbjct: 16 HSWYHGPVSRSAAEYLLSSLINGSFLVRESESSPGQLSISLRYEGRVYHYRINTTADGK 74
>3k2m_A Proto-oncogene tyrosine-protein kinase ABL1; engineered binding
protein, antibody mimic, protein-protein SH2 domain,
ATP-binding, phosphoprotein; 1.75A {Homo sapiens} PDB:
3uyo_A 3t04_A 1ab2_A
Length = 112
Score = 50.7 bits (122), Expect = 1e-09
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Query: 1 MAWFH-SVNRERAVQMVAAGGEGCFLVRPSSSS-EPLTLTLWYGGRAYNIFIRKRDDNK 57
+W+H V+R A ++++G G FLVR S SS +++L Y GR Y+ I D K
Sbjct: 5 HSWYHGPVSRNAAEYLLSSGINGSFLVRESESSPGQRSISLRYEGRVYHYRINTASDGK 63
>3eaz_A Tyrosine-protein kinase CSK; SH2, disulfide, oxidized reduced,
ATP-binding, cell membrane, cytoplasm, membrane,
nucleotide-binding, phosphoprotein; 1.31A {Homo
sapiens} PDB: 3eac_A
Length = 106
Score = 50.7 bits (122), Expect = 1e-09
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
Query: 1 MAWFH-SVNRERAVQMVAAGGEGCFLVRPSSSSEP--LTLTLWYGGRAYNIFIRKRDD 55
M WFH + RE+A +++ G FLVR S++ P TL + G+ + I
Sbjct: 8 MPWFHGKITREQAERLLYPPETGLFLVRESTNY-PGDYTLCVSSDGKVEHYRIMYHAS 64
>3us4_A Megakaryocyte-associated tyrosine-protein kinase; SH2 domain,
signaling protein, structural genomics, joint CE
structural genomics, JCSG; 1.50A {Homo sapiens} PDB:
1jwo_A
Length = 98
Score = 50.3 bits (121), Expect = 2e-09
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
Query: 1 MAWFH-SVNRERAVQMVAAGGEGCFLVRPSSSSEP--LTLTLWYGGRAYNIFIRKRDD 55
M WFH ++ + AVQ + +G FLVR S+ P L + +G + + RD
Sbjct: 5 MPWFHGKISGQEAVQQLQPPEDGLFLVRESARH-PGDYVLCVSFGRDVIHYRVLHRDG 61
>1ju5_A CRK; CRK, SH2, SH3, adaptor protein, phosphopeptide, protein
binding/transferase complex; HET: PTR; NMR {Homo
sapiens} SCOP: d.93.1.1
Length = 109
Score = 50.2 bits (120), Expect = 2e-09
Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Query: 2 AWFH-SVNRERAVQMVAAGGEGCFLVRPSSSSE-PLTLTLWYGGRAYNIFIRKRDDNK 57
+W+ ++R+ AV ++ G FLVR SS+S L++ R + I
Sbjct: 1 SWYWGRLSRQEAVALLQGQRHGVFLVRDSSTSPGDYVLSVSENSRVSHYIINSSGPRP 58
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5-
triphosphate, wortmannin, H1047R, ATP-binding, disease
mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB:
3hiz_B 2rd0_B 4a55_B* 3mtt_A
Length = 373
Score = 51.8 bits (123), Expect = 6e-09
Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Query: 3 WFH-SVNRERAVQMVAAGGEGCFLVRPSSSSEP--LTLTLWYGGRAYNIFIRKRDD 55
W+ ++RE + + +G FLVR +S+ TLTL GG I I RD
Sbjct: 12 WYWGDISREEVNEKLRDTADGTFLVRDASTKMHGDYTLTLRKGGNNKLIKIFHRDG 67
Score = 47.9 bits (113), Expect = 1e-07
Identities = 15/56 (26%), Positives = 22/56 (39%), Gaps = 1/56 (1%)
Query: 3 WFH-SVNRERAVQMVAAGGEGCFLVRPSSSSEPLTLTLWYGGRAYNIFIRKRDDNK 57
W S NR +A ++ +G FLVR SS ++ G + I K
Sbjct: 303 WNVGSSNRNKAENLLRGKRDGTFLVRESSKQGCYACSVVVDGEVKHCVINKTATGY 358
>2ysx_A Signaling inositol polyphosphate phosphatase SHIP II; SH2 domain,
phosphotyrosine binding domain, protein tyrosine
kinase, signal transduction; NMR {Homo sapiens}
Length = 119
Score = 49.2 bits (118), Expect = 6e-09
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Query: 3 WFH-SVNRERAVQMVAAGG-EGCFLVRPSSSSE-PLTLTLWYGGRAYNIFIRKRDDNK 57
W H ++ R +A ++++ G +G FLVR S S L + Y Y I +D+K
Sbjct: 12 WNHGNITRSKAEELLSRTGKDGSFLVRASESISRAYALCVLYRNCVYTYRILPNEDDK 69
>3pqz_A Growth factor receptor-bound protein 7; SH2, binds
phosphotyrosine, tyrosine kinases, cytoplasmic, P
binding; 2.41A {Homo sapiens} PDB: 1mw4_A* 2l4k_A*
2qms_A
Length = 117
Score = 49.2 bits (118), Expect = 7e-09
Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 6/61 (9%)
Query: 1 MAWFH-SVNRERAVQMVAAGG--EGCFLVRPSSSSEP--LTLTLWYGGRAYNIFIRKRDD 55
WFH ++RE + +++ G +G FLVR S + P L+L + + + I ++
Sbjct: 14 QLWFHGRISREESQRLIGQQGLVDGLFLVRESQRN-PQGFVLSLCHLQKVKHYLILPSEE 72
Query: 56 N 56
Sbjct: 73 E 73
>1nrv_A Growth factor receptor-bound protein 10; dimer, signaling
protein; 1.65A {Homo sapiens} SCOP: d.93.1.1 PDB:
3m7f_A
Length = 105
Score = 48.8 bits (117), Expect = 8e-09
Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 6/73 (8%)
Query: 1 MAWFH-SVNRERAVQMVAAGG--EGCFLVRPSSSSEP--LTLTLWYGGRAYNIFIRKRDD 55
WFH ++RE + +++ G +G FL+R S S+ P LTL + + N I +D
Sbjct: 5 QHWFHGRISREESHRIIKQQGLVDGLFLLRDSQSN-PKAFVLTLCHHQKIKNFQILPCED 63
Query: 56 NKIGLGTFKPNEV 68
+ +
Sbjct: 64 DGQTFFSLDDGNT 76
>1rja_A Tyrosine-protein kinase 6; human protein tyrosine kinase-6
(PTK6/BRK), SRC homology 2(S domain, solution
structure, backbone dynamics, transferase; NMR {Homo
sapiens} SCOP: d.93.1.1
Length = 100
Score = 48.3 bits (116), Expect = 9e-09
Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 4/59 (6%)
Query: 3 WFH-SVNRERAVQMVAAGG--EGCFLVRPSSSSE-PLTLTLWYGGRAYNIFIRKRDDNK 57
WF ++R AV+ + A G G FL+R S L++ + I +R +
Sbjct: 4 WFFGCISRSEAVRRLQAEGNATGAFLIRVSEKPSADYVLSVRDTQAVRHYKIWRRAGGR 62
>1h9o_A Phosphatidylinositol 3-kinase; transferase/receptor, complex
(phosphotransferase/receptor), phosphotransferase, SH2
domain; HET: PTR; 1.79A {Homo sapiens} SCOP: d.93.1.1
PDB: 1pic_A* 1bfi_A 1bfj_A 1qad_A
Length = 112
Score = 48.8 bits (117), Expect = 1e-08
Identities = 15/58 (25%), Positives = 22/58 (37%), Gaps = 1/58 (1%)
Query: 1 MAWFH-SVNRERAVQMVAAGGEGCFLVRPSSSSEPLTLTLWYGGRAYNIFIRKRDDNK 57
W S NR +A ++ +G FLVR SS ++ G + I K
Sbjct: 10 KTWNVGSSNRNKAENLLRGKRDGTFLVRESSKQGCYACSVVVDGEVKHCVINKTATGY 67
>3gqi_B Phospholipase C-gamma-1; phosphorylated kinase, PY-recognition,
tandem SH2 domains, A analog, ATP-binding,
craniosynostosis, disease mutation; HET: PTR DVT ACP;
2.50A {Rattus norvegicus} PDB: 2fci_A* 2pld_A* 2ple_A*
Length = 226
Score = 49.9 bits (119), Expect = 1e-08
Identities = 24/126 (19%), Positives = 37/126 (29%), Gaps = 17/126 (13%)
Query: 1 MAWFH------SVNRERAVQM------VAAGGEGCFLVRPSSSSEPL-TLTLWYGGRAYN 47
WFH R A ++ +G FLVR S + TL+ W G+ +
Sbjct: 4 EKWFHGKLGAGRDGRHIAERLLTEYCIETGAPDGSFLVRESETFVGDYTLSFWRNGKVQH 63
Query: 48 IFIRKRDDNKIGLGTFKPNEVMAAREDATNH----PRDSHPCRTQPRCVITSRPRGVVLR 103
I R D N V + D H P + + +
Sbjct: 64 CRIHSRQDAGTPKFFLTDNLVFDSLYDLITHYQQVPLRCNEFEMRLSEPVPQTNAHESKE 123
Query: 104 WRLSRI 109
W + +
Sbjct: 124 WYHASL 129
Score = 41.4 bits (97), Expect = 2e-05
Identities = 12/52 (23%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 3 WFH-SVNRERAVQM-VAAGGEGCFLVRPSSSSEPLTLTLWYGGRAYNIFIRK 52
W+H S+ R +A M + +G FLVR + ++ G+ + +++
Sbjct: 124 WYHASLTRAQAEHMLMRVPRDGAFLVRKRNEPNSYAISFRAEGKIKHCRVQQ 175
>2oq1_A Tyrosine-protein kinase ZAP-70; tandem SH2 domains, ZAP-70,
tyrosine kinase, transferase; HET: PTR; 1.90A {Homo
sapiens} SCOP: d.93.1.1 d.93.1.1 PDB: 1m61_A
Length = 254
Score = 49.9 bits (119), Expect = 2e-08
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Query: 3 WFH-SVNRERAVQMVAAGG--EGCFLVRPSSSSEPLTLTLWYGGRAYNIFIRKRDDNK 57
W+H S+ RE A + + +G +G FL+RP L+L YG Y+ I + K
Sbjct: 161 WYHSSLTREEAERKLYSGAQTDGKFLLRPRKEQGTYALSLIYGKTVYHYLISQDKAGK 218
Score = 47.6 bits (113), Expect = 1e-07
Identities = 14/61 (22%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Query: 1 MAWFH-SVNRERAVQMVAAGG--EGCFLVRPSSSSE-PLTLTLWYGGRAYNIFIRKRDDN 56
+ +F+ S++R A + + G +G FL+R S L+L + R ++ I ++ +
Sbjct: 6 LPFFYGSISRAEAEEHLKLAGMADGLFLLRQCLRSLGGYVLSLVHDVRFHHFPIERQLNG 65
Query: 57 K 57
Sbjct: 66 T 66
>2aug_A Growth factor receptor-bound protein 14; phosphorylation, SH2
domain, signaling protein; 2.30A {Homo sapiens}
Length = 126
Score = 48.5 bits (116), Expect = 2e-08
Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Query: 1 MAWFH-SVNRERAVQMVAAGG--EGCFLVRPSSSSE-PLTLTLWYGGRAYNIFIRKRDDN 56
WFH ++R+ A +++ G +G FLVR S S+ L++ +G + + I +D+
Sbjct: 26 QPWFHHKISRDEAQRLIIQQGLVDGVFLVRDSQSNPKTFVLSMSHGQKIKHFQIIPVEDD 85
Query: 57 K 57
Sbjct: 86 G 86
>2dly_A FYN-related kinase; BRK family kinase, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Mus musculus}
Length = 121
Score = 48.0 bits (115), Expect = 2e-08
Identities = 15/62 (24%), Positives = 27/62 (43%), Gaps = 6/62 (9%)
Query: 1 MAWFH-SVNRERAVQ--MVAAGGEGCFLVRPSSSSEP--LTLTLWYGGRAYNIFIRKRDD 55
WF ++ R A + + + G FL+R S S +L++ G + IR+ D+
Sbjct: 16 EPWFFGAIKRADAEKQLLYSENQTGAFLIRESESQ-KGDFSLSVLDEGVVKHYRIRRLDE 74
Query: 56 NK 57
Sbjct: 75 GG 76
>1d4t_A T cell signal transduction molecule SAP; SH2 domain, tyrosine
kinase, signal transduction, peptide recognition,
signaling protein; 1.10A {Homo sapiens} SCOP: d.93.1.1
PDB: 1d1z_A 1d4w_A* 1m27_A*
Length = 104
Score = 47.3 bits (113), Expect = 2e-08
Identities = 15/60 (25%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Query: 1 MAWFH-SVNRERAVQMVAAGG-EGCFLVRPSSSSE-PLTLTLWYGGRAYNIFIRKRDDNK 57
+A +H ++RE +++ A G +G +L+R S S L + Y G Y + + +
Sbjct: 4 VAVYHGKISRETGEKLLLATGLDGSYLLRDSESVPGVYCLCVLYHGYIYTYRVSQTETGS 63
>1r1p_A GRB2-related adaptor protein 2; SH2, GADS, phosphopeptide,
peptide binding protein; HET: PTR; 1.80A {Mus musculus}
SCOP: d.93.1.1 PDB: 1r1q_A* 1r1s_A*
Length = 100
Score = 47.2 bits (113), Expect = 3e-08
Identities = 12/58 (20%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
Query: 3 WFH-SVNRERAVQMVAAGGEGCFLVRPSSSSEP--LTLTLWYGGRAYNIFIRKRDDNK 57
WFH ++R +A ++ G F++R S SS P ++++ + + + +
Sbjct: 11 WFHEGLSRHQAENLLMGKDIGFFIIRASQSS-PGDFSISVRHEDDVQHFKVMRDTKGN 67
>2eob_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma
2; SH2, phosphoinositide phospholipase C, PLC-gamma-2,
phospholipase C-gamma-2; NMR {Rattus norvegicus}
Length = 124
Score = 47.6 bits (114), Expect = 4e-08
Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 3/64 (4%)
Query: 1 MAWFH-SVNRERAVQM-VAAGGEGCFLVRPSSSSEPLTLTLWYGGRAYNIFIRKRDDNKI 58
W++ ++R A M + +G FL+R ++ +T G+ + I RD
Sbjct: 19 KPWYYDRLSRGEAEDMLMRIPRDGAFLIRKREGTDSYAITFRARGKVKHCRIN-RDGRHF 77
Query: 59 GLGT 62
LGT
Sbjct: 78 VLGT 81
>2vqe_N 30S ribosomal protein S14 type Z; tRNA-binding, rRNA-binding,
metal-binding, zinc-finger, translation; HET: TM2 PAR;
2.5A {Thermus thermophilus} SCOP: g.39.1.7 PDB: 1gix_Q*
1hnw_N* 1hnx_N* 1hnz_N* 1hr0_N 1ibk_N* 1ibl_N* 1ibm_N
1jgo_Q* 1jgp_Q* 1jgq_Q* 1ml5_Q* 1xmo_N* 1xmq_N* 1xnq_N*
1xnr_N* 1yl4_Q 2b64_N* 2b9m_N* 2b9o_N* ...
Length = 61
Score = 46.1 bits (110), Expect = 4e-08
Identities = 18/47 (38%), Positives = 22/47 (46%)
Query: 82 SHPCRTQPRCVITSRPRGVVLRWRLSRIMFRHLADYNKLSGVQRAMW 128
R RCV R R V + L RI R LA +L GV++A W
Sbjct: 15 KFKVRAYTRCVRCGRARSVYRFFGLCRICLRELAHKGQLPGVRKASW 61
>2y3a_B Phosphatidylinositol 3-kinase regulatory subunit; transferase,
phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus
musculus}
Length = 302
Score = 48.9 bits (116), Expect = 4e-08
Identities = 13/58 (22%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Query: 1 MAWFH-SVNRERAVQMVAAGGEGCFLVRPSSSSEPLTLTLWYGGRAYNIFIRKRDDNK 57
W+ +NR +A +M++ +G FL+R SS ++ G + I +
Sbjct: 194 RTWYVGKINRTQAEEMLSGKRDGTFLIRESSQRGCYACSVVVDGDTKHCVIYRTATGF 251
>1jyr_A Growth factor receptor-bound protein 2; receptor binding,
regulatory, inhibitor, signaling protein-I complex;
HET: PTR; 1.55A {Homo sapiens} SCOP: d.93.1.1 PDB:
1jyq_A* 1jyu_A 1qg1_E* 1x0n_A* 2aob_A* 2aoa_A* 3n7y_A*
1tze_E* 1zfp_E* 3mxc_A* 3mxy_A* 1cj1_A*
Length = 96
Score = 46.4 bits (111), Expect = 5e-08
Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 5/61 (8%)
Query: 1 MAWFH-SVNRERAVQMVAAGGE-GCFLVRPSSSSEP--LTLTLWYGGRAYNIFIRKRDDN 56
MAWF + R +A +M++ G FL+R S S+ P +L++ +G + + +
Sbjct: 3 MAWFFGKIPRAKAEEMLSKQRHDGAFLIRESESA-PGDFSLSVKFGNDVQHFKVLRDGAG 61
Query: 57 K 57
K
Sbjct: 62 K 62
>1i3z_A EWS/FLI1 activated transcript 2; SH2 domain phosphotyrosine
signal transduction lymphocyte, signaling protein; HET:
PTR; 2.15A {Mus musculus} SCOP: d.93.1.1
Length = 103
Score = 46.5 bits (111), Expect = 5e-08
Identities = 14/65 (21%), Positives = 28/65 (43%), Gaps = 3/65 (4%)
Query: 1 MAWFH-SVNRERAVQMVAAGG-EGCFLVRPSSSSE-PLTLTLWYGGRAYNIFIRKRDDNK 57
+ ++H + + ++ GG +G FL+R S S L L + + Y+ I +
Sbjct: 3 LPYYHGCLTKRECEALLLKGGVDGNFLIRDSESVPGALCLCVSFKKLVYSYRIFREKHGY 62
Query: 58 IGLGT 62
+ T
Sbjct: 63 YRIET 67
>1a81_A SYK kinase; complex (transferase-peptide), SYK, kinase, SH2
domain; HET: PTR; 3.00A {Homo sapiens} SCOP: d.93.1.1
d.93.1.1 PDB: 1csy_A* 1csz_A*
Length = 254
Score = 48.4 bits (115), Expect = 6e-08
Identities = 14/61 (22%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 1 MAWFH-SVNRERAVQMVAAGG--EGCFLVRPSSSSE-PLTLTLWYGGRAYNIFIRKRDDN 56
+ +F ++ RE A + GG +G +L+R S + L++ +G +A++ I + +
Sbjct: 5 LPFFFGNITREEAEDYLVQGGMSDGLYLLRQSRNYLGGFALSVAHGRKAHHYTIERELNG 64
Query: 57 K 57
Sbjct: 65 T 65
Score = 46.8 bits (111), Expect = 2e-07
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Query: 3 WFH-SVNRERAVQMVAAGG--EGCFLVRPSSSSEPLTLTLWYGGRAYNIFIRKRDDNK 57
WFH ++RE + Q+V G G FL+R ++ L L + G+ + I K K
Sbjct: 160 WFHGKISREESEQIVLIGSKTNGKFLIRARDNNGSYALCLLHEGKVLHYRIDKDKTGK 217
>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1;
transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP:
b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A
Length = 495
Score = 48.6 bits (116), Expect = 6e-08
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Query: 1 MAWFH-SVNRERAVQMVAAGGEGCFLVRPSSSSE-PLTLTLWYGGRAYNIFIRKRDDNK 57
+W+H V+R A ++++G G FLVR S SS +++L Y GR Y+ I D K
Sbjct: 105 HSWYHGPVSRNAAEYLLSSGINGSFLVRESESSPGQRSISLRYEGRVYHYRINTASDGK 163
>2eo3_A CRK-like protein; phosphorylation, repeat, SH2 domain, SH3
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 111
Score = 46.1 bits (110), Expect = 8e-08
Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 4/60 (6%)
Query: 1 MAWFH-SVNRERAVQMVAAGGEGCFLVRPSSSSEP--LTLTLWYGGRAYNIFIRKRDDNK 57
AW+ V+R+ A + G FLVR SS+ P L++ R + I + +
Sbjct: 19 SAWYMGPVSRQEAQTRLQGQRHGMFLVRDSSTC-PGDYVLSVSENSRVSHYIINSLPNRR 77
>1ka6_A SH2 domain protein 1A; SH2 domain, protein-peptide complex,
immune system; HET: PTR; NMR {Homo sapiens} SCOP:
d.93.1.1 PDB: 1ka7_A
Length = 128
Score = 46.6 bits (111), Expect = 8e-08
Identities = 15/60 (25%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Query: 1 MAWFH-SVNRERAVQMVAAGG-EGCFLVRPSSSSE-PLTLTLWYGGRAYNIFIRKRDDNK 57
+A +H ++RE +++ A G +G +L+R S S L + Y G Y + + +
Sbjct: 4 VAVYHGKISRETGEKLLLATGLDGSYLLRDSESVPGVYCLCVLYHGYIYTYRVSQTETGS 63
>3ov1_A Growth factor receptor-bound protein 2; GRB2 SH2 domain,
phosphotyrosine binding, signaling protein, signaling
protein-antagonist complex; HET: PTR; 1.60A {Homo
sapiens} PDB: 3imj_A* 3in7_A* 3imd_A* 3kfj_A* 3n8m_A*
3in8_A* 3s8l_A* 3s8n_A* 3s8o_A* 2huy_A* 2h5k_A* 2huw_A*
2h46_E* 3c7i_A* 3n84_A* 1fhs_A 1bm2_A* 1bmb_A* 3ove_A*
1fyr_A* ...
Length = 117
Score = 46.5 bits (111), Expect = 8e-08
Identities = 15/61 (24%), Positives = 29/61 (47%), Gaps = 5/61 (8%)
Query: 1 MAWFH-SVNRERAVQMVAAGGE-GCFLVRPSSSSEP--LTLTLWYGGRAYNIFIRKRDDN 56
WF + R +A +M++ G FL+R S S+ P +L++ +G + + +
Sbjct: 6 HPWFFGKIPRAKAEEMLSKQRHDGAFLIRESESA-PGDFSLSVKFGNDVQHFKVLRDGAG 64
Query: 57 K 57
K
Sbjct: 65 K 65
>2dlz_A Protein VAV-2; RHO family guanine nucleotide exchange factor,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 46.1 bits (110), Expect = 9e-08
Identities = 10/63 (15%), Positives = 27/63 (42%), Gaps = 3/63 (4%)
Query: 1 MAWFH-SVNRERAVQMVAAGGEGCFLVRPSSSSE-PLTLTLWYGGRAYNIFIRKRDDNKI 58
WF ++ R++ ++ + G +L+R + +++ + +I + DN I
Sbjct: 16 YPWFAGNMERQQTDNLLKSHASGTYLIRERPAEAERFAISIKFNDEVKHIKVV-EKDNWI 74
Query: 59 GLG 61
+
Sbjct: 75 HIT 77
>2gsb_A RAS GTPase-activating protein 1; GAP, RAS P21 protein activator,
P120GAP, rasgap, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 119
Score = 45.7 bits (109), Expect = 1e-07
Identities = 15/61 (24%), Positives = 27/61 (44%), Gaps = 5/61 (8%)
Query: 1 MAWFH-SVNRERAVQMVAAGGE-GCFLVRPSSSSEP--LTLTLWYGGRAYNIFIRKRDDN 56
WFH ++++ A ++ G+ FLVRPS ++ P +L I +N
Sbjct: 16 KIWFHGKISKQEAYNLLMTVGQVCSFLVRPSDNT-PGDYSLYFRTNENIQRFKICPTPNN 74
Query: 57 K 57
+
Sbjct: 75 Q 75
>2hdv_A SH2-B PH domain containing signaling mediator 1 gamma isoform;
adapter protein, signaling protein; 2.00A {Mus
musculus} PDB: 2hdx_A* 1rpy_A 1rqq_C*
Length = 111
Score = 45.0 bits (107), Expect = 3e-07
Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 7/63 (11%)
Query: 1 MAWFH-SVNRERA---VQMVAAGGEGCFLVRPSSSSEP--LTLTLWYGGRAYNIFIRKRD 54
WFH ++R +A V G G FLVR S + LT + G+A ++ +
Sbjct: 9 YPWFHGMLSRLKAAQLVLEGGTGSHGVFLVRQSETR-RGECVLTFNFQGKAKHLRLSLNA 67
Query: 55 DNK 57
+
Sbjct: 68 AGQ 70
>2izv_A Suppressor of cytokine signaling 4; signal transduction
inhibitor, growth regulation, signal transduction, SH2
domain, nuclear protein; 2.55A {Homo sapiens} SCOP:
a.271.1.1 d.93.1.1
Length = 187
Score = 45.6 bits (108), Expect = 4e-07
Identities = 10/65 (15%), Positives = 27/65 (41%), Gaps = 3/65 (4%)
Query: 3 WFH-SVNRERAVQMVAAGGEGCFLVRPSSSSE-PLTLTLWYGGRAYNIFIRKRDDNKIGL 60
+ +++ A ++ EG FL+R S+ + +++ R+ + I + ++
Sbjct: 36 CYWGVMDKYAAEALLEGKPEGTFLLRDSAQEDYLFSVSFRRYSRSLHARIE-QWNHNFSF 94
Query: 61 GTFKP 65
P
Sbjct: 95 DAHDP 99
>2crh_A VAV proto-oncogene; oncoprotein, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} PDB: 2ror_A* 2lct_A*
Length = 138
Score = 44.7 bits (106), Expect = 6e-07
Identities = 12/58 (20%), Positives = 22/58 (37%), Gaps = 4/58 (6%)
Query: 1 MAWFH-SVNRERAVQMVAAGGEGCFLVRPSSSSEP--LTLTLWYGGRAYNIFIRKRDD 55
W+ + R A ++A +G FLVR +++ Y +I I +
Sbjct: 26 HLWYAGPMERAGAESILANRSDGTFLVRQRVKD-AAEFAISIKYNVEVKHIKIMTAEG 82
>3tkz_A Tyrosine-protein phosphatase non-receptor type 11; SH2 domain,
protein protein interactions, PTR residues, HYDR
peptide complex; HET: PTR; 1.80A {Homo sapiens} PDB:
3tl0_A* 1aya_A* 1ayb_A* 1ayc_A* 1ayd_A
Length = 109
Score = 43.4 bits (103), Expect = 8e-07
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Query: 1 MAWFH-SVNRERAVQM-VAAGGEGCFLVRPSSSSE-PLTLTLWYGGRAYNIFIRKRDDN 56
WFH ++ A + + G +G FL RPS S+ TL++ G +I I+ D
Sbjct: 7 RRWFHPNITGVEAENLLLTRGVDGSFLARPSKSNPGDFTLSVRRNGAVTHIKIQNTGDY 65
>2ekx_A Cytoplasmic tyrosine-protein kinase BMX; SH2 domain,
phosphotyrosine binding domain, protein tyrosine
kinase, signal transduction; NMR {Homo sapiens}
Length = 110
Score = 43.4 bits (103), Expect = 9e-07
Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 8/70 (11%)
Query: 1 MAWFH-SVNRERAVQMVAAGG-EGCFLVRPSSSSEPLTLTLWY------GGRAYNIFIRK 52
WF +++R ++ Q++ G EG F+VR SS T++L+ G + +
Sbjct: 11 YDWFAGNISRSQSEQLLRQKGKEGAFMVRNSSQVGMYTVSLFSKAVNDKKGTVKHYHVHT 70
Query: 53 RDDNKIGLGT 62
+NK+ L
Sbjct: 71 NAENKLYLAE 80
>2kno_A Tensin-like C1 domain-containing phosphatase; SH2 domain, TENC1,
solution structure, cell junctio membrane, hydrolase,
membrane, metal-binding; NMR {Homo sapiens} PDB: 2l6k_A
Length = 131
Score = 43.7 bits (103), Expect = 1e-06
Identities = 13/57 (22%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
Query: 3 WFH-SVNRERAVQMVAAGGEGCFLVRPSSSSE-PLTLTLWYGGRAYNIFIRKRDDNK 57
W+ ++R++A+ ++ G FL+R S S + L L + K D +
Sbjct: 22 WYKPHLSRDQAIALLKDKDPGAFLIRDSHSFQGAYGLALKVATPPPSAQPWKGDPVE 78
>2dm0_A Tyrosine-protein kinase TXK; TEC family kinase, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 125
Score = 43.4 bits (103), Expect = 1e-06
Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 8/65 (12%)
Query: 1 MAWFH-SVNRERAVQMVAAGG-EGCFLVRPSSSSEPLTLTLWYGGRAYNIF------IRK 52
W+H ++ R +A ++ EG F+VR S T++++ G R I+K
Sbjct: 16 YEWYHRNITRNQAEHLLRQESKEGAFIVRDSRHLGSYTISVFMGARRSTEAAIKHYQIKK 75
Query: 53 RDDNK 57
D +
Sbjct: 76 NDSGQ 80
>2ge9_A Tyrosine-protein kinase BTK; SH2 domain, structure, transferase;
NMR {Homo sapiens}
Length = 125
Score = 43.1 bits (102), Expect = 2e-06
Identities = 15/69 (21%), Positives = 30/69 (43%), Gaps = 8/69 (11%)
Query: 1 MAWFH-SVNRERAVQMVAAGG-EGCFLVRPSSSSEPLTLTLWY------GGRAYNIFIRK 52
W+ + R +A Q++ G EG F+VR SS + T++++ G + +
Sbjct: 11 YEWYSKHMTRSQAEQLLKQEGKEGGFIVRDSSKAGKYTVSVFAKSTGDPQGVIRHYVVCS 70
Query: 53 RDDNKIGLG 61
++ L
Sbjct: 71 TPQSQYYLA 79
>2c9w_A Suppressor of cytokine signaling 2; growth regulation, SH2
domain, signal transduction inhibitor nuclear protein;
1.9A {Homo sapiens} SCOP: a.271.1.1 d.93.1.1
Length = 169
Score = 43.3 bits (102), Expect = 2e-06
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
Query: 3 WFH-SVNRERAVQMVAAGGEGCFLVRPSSSSE-PLTLTLWYGGRAYNIFIRKRDDNKIGL 60
W+ S+ A + + EG FL+R SS S+ LT+++ N+ I D K L
Sbjct: 19 WYWGSMTVNEAKEKLKEAPEGTFLIRDSSHSDYLLTISVKTSAGPTNLRIE-YQDGKFRL 77
Query: 61 GT 62
+
Sbjct: 78 DS 79
>3s9k_A Tyrosine-protein kinase ITK/TSK; proline isomerization, CIS
proline, domain swapped dimer, SH transferase; HET:
CIT; 2.35A {Mus musculus} PDB: 2etz_A* 2eu0_A* 1lui_A
1luk_A 1lum_A 1lun_A 2k79_B 2k7a_B
Length = 118
Score = 42.7 bits (101), Expect = 2e-06
Identities = 12/49 (24%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 1 MAWFH-SVNRERAVQM-VAAGGEGCFLVRPSSSSEPLTLTLWYGGRAYN 47
W++ S++R++A ++ + G EG F+VR S + T++++
Sbjct: 9 YEWYNKSISRDKAEKLLLDTGKEGAFMVRDSRTPGTYTVSVFTKAIISE 57
>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES,
fujinami, avian sarcoma, viral, feline virus, SGC; HET:
STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*
Length = 377
Score = 44.2 bits (105), Expect = 2e-06
Identities = 13/55 (23%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Query: 1 MAWFH-SVNRERAVQMVAAGGEGCFLVRPSSSSEPLTLTLWYGGRAYNIFIRKRD 54
W+H ++ R +++ G FLVR S + L++ + G + I+ D
Sbjct: 13 QLWYHGAIPRAEVAELLVH--SGDFLVRESQGKQEYVLSVLWDGLPRHFIIQSLD 65
>2cia_A Cytoplasmic protein NCK2; SH2-domain, SH3 domain,
phosphorylation, binding specificity; HET: PTR MPD;
1.45A {Homo sapiens} PDB: 1z3k_A 2ci9_A* 2ci8_A*
Length = 102
Score = 42.2 bits (100), Expect = 3e-06
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Query: 3 WFH-SVNRERAVQM-VAAGGEGCFLVRPSSSSE-PLTLTLWYGGRAYNIFIRKRDDN-KI 58
W++ +V R +A G EG FL+R S SS +++L G+ + ++ D+ I
Sbjct: 7 WYYGNVTRHQAECALNERGVEGDFLIRDSESSPSDFSVSLKASGKNKHFKVQLVDNVYCI 66
Query: 59 GLGTF 63
G F
Sbjct: 67 GQRRF 71
>2vif_A Suppressor of cytokine signalling 6; growth regulation, signal
transduction inhibitor, KIT regula phosphotyrosine,
signaling protein; HET: PTR; 1.45A {Homo sapiens}
Length = 141
Score = 42.9 bits (101), Expect = 3e-06
Identities = 15/58 (25%), Positives = 24/58 (41%), Gaps = 2/58 (3%)
Query: 1 MAWFH-SVNRERAVQMVAAGGEGCFLVRPSSSSEPL-TLTLWYGGRAYNIFIRKRDDN 56
W+ + R A +A +G FLVR SS L +L+ G+ + I +
Sbjct: 24 QGWYWGPITRWEAEGKLANVPDGSFLVRDSSDDRYLLSLSFRSHGKTLHTRIEHSNGR 81
>1lkk_A Human P56 tyrosine kinase; complex (tyrosine kinase/peptide);
HET: PTR; 1.00A {Homo sapiens} SCOP: d.93.1.1 PDB:
1lcj_A* 1bhf_A* 1bhh_A 1lkl_A* 1bhh_B 1fbz_A* 1ijr_A*
1cwd_L* 1cwe_A*
Length = 105
Score = 41.5 bits (98), Expect = 5e-06
Identities = 16/66 (24%), Positives = 29/66 (43%), Gaps = 9/66 (13%)
Query: 1 MAWFH-SVNRERAVQMVAAGG--EGCFLVRPSSSSE-PLTLTLWYGGRAYNIF-----IR 51
WF +++R+ A + + A G G FL+R S S+ +L++ + IR
Sbjct: 4 EPWFFKNLSRKDAERQLLAPGNTHGSFLIRESESTAGSFSLSVRDFDQNQGEVVKHYKIR 63
Query: 52 KRDDNK 57
D+
Sbjct: 64 NLDNGG 69
>2bbu_A Suppressor of cytokine signaling 3; SH2 domain, extended SH2
subdomain, PEST motif, protein complex, cytokine
regulator; HET: PTR; NMR {Mus musculus}
Length = 164
Score = 42.3 bits (99), Expect = 5e-06
Identities = 13/56 (23%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Query: 3 WFH-SVNRERAVQMVAAGGEGCFLVRPSSSSEPL-TLTLWYGGRAYNIFIRKRDDN 56
++ +V A +++A G FL+R SS TL++ N+ I+ +
Sbjct: 25 FYWSAVTGGEANLLLSAEPAGTFLIRDSSDQRHFFTLSVKTQSGTKNLRIQCEGGS 80
>1wqu_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; SH2
domain, feline sarcoma oncogene, structural genomics;
NMR {Homo sapiens} PDB: 2dcr_A
Length = 114
Score = 41.6 bits (98), Expect = 6e-06
Identities = 13/56 (23%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Query: 1 MAWFH-SVNRERAVQMVAAGGEGCFLVRPSSSSEPLTLTLWYGGRAYNIFIRKRDD 55
W+H ++ R +++ G FLVR S + L++ + G + I+ D+
Sbjct: 16 QLWYHGAIPRAEVAELLVH--SGDFLVRESQGKQEYVLSVLWDGLPRHFIIQSLDN 69
>2hmh_A Suppressor of cytokine signaling 3; SOCS3, GP130, PTyr, peptide
complex, cytokine regulator; HET: PTR; 2.00A {Mus
musculus}
Length = 152
Score = 41.9 bits (98), Expect = 6e-06
Identities = 21/113 (18%), Positives = 39/113 (34%), Gaps = 8/113 (7%)
Query: 3 WFH-SVNRERAVQMVAAGGEGCFLVRPSSSSEPL-TLTLWYGGRAYNIFIRKRDDNKIGL 60
++ +V A +++A G FL+R SS TL++ N+ I+ + L
Sbjct: 36 FYWSAVTGGEANLLLSAEPAGTFLIRDSSDQRHFFTLSVKTQSGTKNLRIQ-XEGGSFSL 94
Query: 61 GTFKPNEVMAAR----EDATNHPRDSHPC-RTQPRCVITSRPRGVVLRWRLSR 108
+ + R +H + P+ G + LSR
Sbjct: 95 QSDPRSTQPVPRFDXVLKLVHHYMPPQALPGSTPKRAYYIYSGGEKIPLVLSR 147
>2lqn_A CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT10 oncogene
homolog (avian)- signaling protein; NMR {Homo sapiens}
PDB: 2lqw_A*
Length = 303
Score = 42.7 bits (99), Expect = 8e-06
Identities = 20/113 (17%), Positives = 37/113 (32%), Gaps = 2/113 (1%)
Query: 3 WFH-SVNRERAVQMVAAGGEGCFLVRPSSSSEP-LTLTLWYGGRAYNIFIRKRDDNKIGL 60
W+ V+R+ A + G FLVR SS+ L++ R + I + + +
Sbjct: 14 WYMGPVSRQEAQTRLQGQRHGMFLVRDSSTCPGDYVLSVSENSRVSHYIINSLPNRRFKI 73
Query: 61 GTFKPNEVMAAREDATNHPRDSHPCRTQPRCVITSRPRGVVLRWRLSRIMFRH 113
G + + + A E H D+ + V +
Sbjct: 74 GDQEFDHLPALLEFYKIHYLDTTTLIEPAPRYPSPPMGSVSAPNLPTAEDNLE 126
>2dx0_A Phospholipase C, gamma 2; phosphoric diester hydrolase,
structural genomics, NPPSFA, national project on
protein structural and functional analyses; 2.50A {Mus
musculus}
Length = 138
Score = 41.4 bits (97), Expect = 1e-05
Identities = 19/68 (27%), Positives = 28/68 (41%), Gaps = 9/68 (13%)
Query: 1 MAWFHS--VNRERAVQM------VAAGGEGCFLVRPSSSSEP-LTLTLWYGGRAYNIFIR 51
WFH +R A ++ +G FLVR S + TL+ W GR + IR
Sbjct: 22 EKWFHKKVESRTSAEKLLQEYCAETGAKDGTFLVRESETFPNDYTLSFWRSGRVQHCRIR 81
Query: 52 KRDDNKIG 59
+N +
Sbjct: 82 STMENGVM 89
>1aot_F FYN protein-tyrosine kinase; SH2 domain, signal transduction,
peptide complex, complex (proto-oncogene/early
protein); HET: PTR; NMR {Homo sapiens} SCOP: d.93.1.1
PDB: 1aou_F*
Length = 106
Score = 40.3 bits (95), Expect = 1e-05
Identities = 15/66 (22%), Positives = 30/66 (45%), Gaps = 9/66 (13%)
Query: 1 MAWFH-SVNRERAVQMVAAGG--EGCFLVRPSSSSE-PLTLTL-----WYGGRAYNIFIR 51
W+ + R+ A + + + G G FL+R S +++ +L++ G + IR
Sbjct: 5 EEWYFGKLGRKDAERQLLSFGNPRGTFLIRESETTKGAYSLSIRDWDDMKGDHVKHYKIR 64
Query: 52 KRDDNK 57
K D+
Sbjct: 65 KLDNGG 70
>1mil_A SHC adaptor protein; SH2 domain, phosphorylation, collagen,
growth regulation, transforming protein, alternative
initiation; 2.70A {Homo sapiens} SCOP: d.93.1.1 PDB:
1tce_A*
Length = 104
Score = 40.3 bits (95), Expect = 1e-05
Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
Query: 1 MAWFH-SVNRERAVQMVAAGGEGCFLVRPSSSSE-PLTLTLWYGGRAYNIFIRKRD 54
WFH ++R A ++ G FLVR S+++ LT G+ ++ + +
Sbjct: 7 EPWFHGKLSRREAEALLQL--NGDFLVRESTTTPGQYVLTGLQSGQPKHLLLVDPE 60
>2dvj_A V-CRK sarcoma virus CT10 oncogene homolog, isoform A; SH3, SH2,
signal transduction, adapter molecule, signaling
protein; HET: PTR; NMR {Homo sapiens} PDB: 2eyy_A
2eyv_A 2eyw_A
Length = 230
Score = 40.3 bits (93), Expect = 4e-05
Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Query: 1 MAWFH-SVNRERAVQMVAAGGEGCFLVRPSSSS-EPLTLTLWYGGRAYNIFIRKRDDNK 57
+W+ ++R+ AV ++ G FLVR SS+S L++ R + I
Sbjct: 13 SSWYWGRLSRQEAVALLQGQRHGVFLVRDSSTSPGDYVLSVSENSRVSHYIINSSGPRP 71
>3maz_A Signal-transducing adaptor protein 1; modular domain,
phosphotyrosine, specificity, cytoplasm,
phosphoprotein, SH2 domain, signaling protein; HET:
PTR; 1.90A {Homo sapiens}
Length = 125
Score = 39.0 bits (91), Expect = 6e-05
Identities = 13/61 (21%), Positives = 24/61 (39%), Gaps = 5/61 (8%)
Query: 1 MAWFH-SVNRERAVQMVAAGGE-GCFLVRPSSSSEPLTLTLWYGGRAYNIF---IRKRDD 55
M +V+R+ A +M+ G ++RP S S ++T+ I +
Sbjct: 15 MPACFYTVSRKEATEMLQKNPSLGNMILRPGSDSRNYSITIRQEIDIPRIKHYKVMSVGQ 74
Query: 56 N 56
N
Sbjct: 75 N 75
>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK,
signal transduction, SH2, SH3, SRC homology, tyrosine
kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1
d.93.1.1 d.144.1.7 PDB: 1jeg_A
Length = 450
Score = 39.6 bits (93), Expect = 8e-05
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Query: 1 MAWFH-SVNRERAVQMVAAGGEGCFLVRPSSSSE-PLTLTLWYGGRAYNIFIRKRDD 55
M WFH + RE+A +++ G FLVR S++ TL + G+ + I
Sbjct: 80 MPWFHGKITREQAERLLYPPETGLFLVRESTNYPGDYTLCVSCEGKVEHYRIMYHAS 136
>2kk6_A Proto-oncogene tyrosine-protein kinase FER; methods development,
SH2, NESG, ATP-binding, cytoplasm, nucleotide-binding,
nucleus, phosphoprotein; NMR {Homo sapiens}
Length = 116
Score = 38.5 bits (90), Expect = 9e-05
Identities = 14/57 (24%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Query: 1 MAWFH-SVNRERAVQMVAAGGEGCFLVRPSSSSE-PLTLTLWYGGRAYNIFIRKRDD 55
W+H ++ R A +++ +G FLVR S L+++ G+ + I+ D+
Sbjct: 17 QDWYHGAIPRIEAQELL--KKQGDFLVRESHGKPGEYVLSVYSDGQRRHFIIQYVDN 71
>2eyz_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH2, SH3,
signaling protein; NMR {Homo sapiens} PDB: 2l3s_A 2l3p_A
2l3q_A 2ggr_A
Length = 304
Score = 39.6 bits (91), Expect = 1e-04
Identities = 24/130 (18%), Positives = 44/130 (33%), Gaps = 4/130 (3%)
Query: 3 WFH-SVNRERAVQMVAAGGEGCFLVRPSSSSEP-LTLTLWYGGRAYNIFIRKRDDNKIGL 60
W+ ++R+ AV ++ G FLVR SS+S L++ R + I
Sbjct: 13 WYWGRLSRQEAVALLQGQRHGVFLVRDSSTSPGDYVLSVSENSRVSHYIINSSGPRPPVP 72
Query: 61 GT--FKPNEVMAAREDATNHPRDSHPCRTQPRCVITSRPRGVVLRWRLSRIMFRHLADYN 118
+ P V +R + DS P + + ++ SR +
Sbjct: 73 PSPAQPPPGVSPSRLRIGDQEFDSLPALLEFYKIHYLDTTTLIEPVSRSRQGSGVILRQE 132
Query: 119 KLSGVQRAMW 128
+ V+
Sbjct: 133 EAEYVRALFD 142
>1blj_A P55 BLK protein tyrosine kinase; signal transduction,
transferase, phosphotransferase, phosphorylation; NMR
{Mus musculus} SCOP: d.93.1.1 PDB: 1blk_A
Length = 114
Score = 37.3 bits (87), Expect = 2e-04
Identities = 16/66 (24%), Positives = 26/66 (39%), Gaps = 10/66 (15%)
Query: 1 MAWFH-SVNRERAVQMVAAGG--EGCFLVRPSSSSEPLTLTL------WYGGRAYNIFIR 51
WF +++R+ A + + A G FL+R S S +L G + IR
Sbjct: 12 EKWFFRTISRKDAERQLLAPMNKAGSFLIRE-SESNKGAFSLSVKDITTQGEVVKHYKIR 70
Query: 52 KRDDNK 57
D+
Sbjct: 71 SLDNGG 76
>3or8_A Transcription elongation factor SPT6; SH2, CTD binding; HET: MES;
1.60A {Candida glabrata} PDB: 3pjp_A* 3psj_A* 3psk_A
2l3t_A 3gxw_A 3gxx_A
Length = 197
Score = 36.4 bits (84), Expect = 0.001
Identities = 13/63 (20%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 3 WFHSVNRERAVQMVAAGGEGCFLVRPSSSS-EPLTLTLWYGGRAY-NIFIR-KRDDNKIG 59
++ N ++A + + G F++R SS + L +T + ++ I+ +N +
Sbjct: 10 YYFPFNGKQAEDYLRSKERGDFVIRQSSRGDDHLAITWKLDKDLFQHVDIQELEKENPLA 69
Query: 60 LGT 62
LG
Sbjct: 70 LGK 72
>1gri_A Growth factor bound protein 2; SH2, SH3, signal transduction
adaptor; 3.10A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1
d.93.1.1 PDB: 1aze_A 2a37_A 2azv_A 2a36_A 2azs_A
Length = 217
Score = 35.8 bits (82), Expect = 0.001
Identities = 18/114 (15%), Positives = 40/114 (35%), Gaps = 4/114 (3%)
Query: 3 WFHSVNRERAVQMVAAGGE-GCFLVRPSSSSE-PLTLTLWYGGRAYNIFIRKRDDNK--I 58
+F + R +A +M++ G FL+R S S+ +L++ +G + + + K +
Sbjct: 61 FFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFL 120
Query: 59 GLGTFKPNEVMAAREDATNHPRDSHPCRTQPRCVITSRPRGVVLRWRLSRIMFR 112
+ F + +T+ R+ V L +
Sbjct: 121 WVVKFNSLNELVDYHRSTSVSRNQQIFLRDIEQVPQQPTYVQALFDFDPQEDGE 174
>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC,
gtpas activation, metal-binding, phorbol-ester binding,
SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A
Length = 463
Score = 36.0 bits (83), Expect = 0.002
Identities = 21/75 (28%), Positives = 32/75 (42%), Gaps = 5/75 (6%)
Query: 4 FH-SVNRERAVQMVAAGGEGCFLVRPSSSSEPL-TLTLWYGGRAYNIFIRKRDDNKIGLG 61
FH ++RE A Q++ EG +L+R S TL L +G + N R D K +G
Sbjct: 54 FHGMISREAADQLLI-VAEGSYLIRESQRQPGTYTLALRFGSQTRN--FRLYYDGKHFVG 110
Query: 62 TFKPNEVMAAREDAT 76
+ + D
Sbjct: 111 EKRFESIHDLVTDGL 125
>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase,
transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP:
b.34.2.1 d.93.1.1 d.144.1.7
Length = 535
Score = 35.6 bits (82), Expect = 0.002
Identities = 14/65 (21%), Positives = 26/65 (40%), Gaps = 8/65 (12%)
Query: 1 MAWFHSVNRERAVQMVAAGG--EGCFLVRPSSSSE-PLTLTLWYGGRA-----YNIFIRK 52
+F + R + +++ G FLVR S +++ L++ A + IRK
Sbjct: 149 EWYFGKITRRESERLLLNAENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRK 208
Query: 53 RDDNK 57
D
Sbjct: 209 LDSGG 213
>3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces
cerevisiae}
Length = 1219
Score = 35.2 bits (81), Expect = 0.003
Identities = 14/62 (22%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
Query: 4 FHSVNRERAVQMVAAGGEGCFLVRPSS-SSEPLTLTL-WYGGRAYNIFIRKRD-DNKIGL 60
+ N +A + + G F++R SS + L +T +I I++ + +N + L
Sbjct: 1027 YFPFNGRQAEDYLRSKERGEFVIRQSSRGDDHLVITWKLDKDLFQHIDIQELEKENPLAL 1086
Query: 61 GT 62
G
Sbjct: 1087 GK 1088
>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase,
phosphorylation, SH2, SH3, phosphotyrosine,
proto-oncogene, phosphotransferase; HET: PTR; 1.50A
{Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB:
1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B*
3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A*
3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...
Length = 452
Score = 33.6 bits (77), Expect = 0.010
Identities = 14/65 (21%), Positives = 26/65 (40%), Gaps = 8/65 (12%)
Query: 1 MAWFHSVNRERAVQMVAAGG--EGCFLVRPSSSSE-PLTLTLWYGGRA-----YNIFIRK 52
+F + R + +++ G FLVR S +++ L++ A + IRK
Sbjct: 66 EWYFGKITRRESERLLLNAENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRK 125
Query: 53 RDDNK 57
D
Sbjct: 126 LDSGG 130
>2xp1_A SPT6; transcription, IWS1, histone chaperone, mRNA export; 2.20A
{Antonospora locustae}
Length = 178
Score = 32.9 bits (75), Expect = 0.015
Identities = 9/63 (14%), Positives = 19/63 (30%), Gaps = 3/63 (4%)
Query: 3 WFHSVNRERAVQMVAAGGEGCFLVRPSSSSEPLTLTLWYGGRAY-NIFIRKRD-DNKIGL 60
F + N + + FL+R S L + + + ++ I +
Sbjct: 16 LFKNFNVTESENYLR-SSTDDFLIRKGSRHGYCVLVIKFASDVFVHMKIEEHSEHYTCSN 74
Query: 61 GTF 63
F
Sbjct: 75 KHF 77
>2b3o_A Tyrosine-protein phosphatase, non-receptor type 6; protein
tyrosine phosphatase, SHP-1, signaling, hydrolase;
2.80A {Homo sapiens} PDB: 1x6c_A 2rmx_A* 2yu7_A*
Length = 532
Score = 33.3 bits (76), Expect = 0.016
Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Query: 1 MAWFH-SVNRERAVQMVAA-GGEGCFLVRPSSSS-EPLTLTLWYGGRAYNIFIRKRDD 55
+ WFH ++ A ++ G G FL RPS + +L++ G + +I I+ D
Sbjct: 2 VRWFHRDLSGLDAETLLKGRGVHGSFLARPSRKNQGDFSLSVRVGDQVTHIRIQNSGD 59
>3ps5_A Tyrosine-protein phosphatase non-receptor type 6; SH2, PTP,
hydrolase, signaling protein; 3.10A {Homo sapiens}
Length = 595
Score = 33.0 bits (75), Expect = 0.016
Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Query: 1 MAWFH-SVNRERAVQMVAA-GGEGCFLVRPSSSS-EPLTLTLWYGGRAYNIFIRKRDD 55
+ WFH ++ A ++ G G FL RPS + +L++ G + +I I+ D
Sbjct: 2 VRWFHRDLSGLDAETLLKGRGVHGSFLARPSRKNQGDFSLSVRVGDQVTHIRIQNSGD 59
>2shp_A SHP-2, SYP, SHPTP-2; tyrosine phosphatase, insulin signaling, SH2
protein; HET: CAT; 2.00A {Homo sapiens} SCOP: c.45.1.2
d.93.1.1 d.93.1.1
Length = 525
Score = 32.9 bits (75), Expect = 0.017
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Query: 3 WFH-SVNRERAVQMVAAGG-EGCFLVRPSSSS-EPLTLTLWYGGRAYNIFIRKRDD 55
WFH ++ A ++ G +G FL RPS S+ LTL++ G +I I+ D
Sbjct: 6 WFHPNITGVEAENLLLTRGVDGSFLARPSKSNPGDLTLSVRRNGAVTHIKIQNTGD 61
>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex,
DOWN-regulated kinase, ordered activation loop; HET: PTR
PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1
d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A*
3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B
Length = 454
Score = 32.4 bits (74), Expect = 0.026
Identities = 15/66 (22%), Positives = 30/66 (45%), Gaps = 9/66 (13%)
Query: 1 MAWFH-SVNRERAVQMVAAGG--EGCFLVRPSSSSE-PLTLTL-----WYGGRAYNIFIR 51
WF ++R+ A + + A G G F++R S +++ +L++ G + IR
Sbjct: 70 EEWFFKGISRKDAERQLLAPGNMLGSFMIRDSETTKGSYSLSVRDYDPRQGDTVKHYKIR 129
Query: 52 KRDDNK 57
D+
Sbjct: 130 TLDNGG 135
>3qwx_X Cell death abnormality protein 2; cell engulfment, signaling
protein; 2.01A {Caenorhabditis elegans}
Length = 174
Score = 31.3 bits (70), Expect = 0.047
Identities = 17/106 (16%), Positives = 34/106 (32%), Gaps = 15/106 (14%)
Query: 1 MAWFH-SVNRERAVQMVAAGG--EGCFLVRPSSSSEPLTLTL-----WYGGRAYNIFIRK 52
+++ ++RE A +++ G FL+R SS +LT+ Y I +
Sbjct: 12 RSFYFPGMSREEAHKLLGEPQVSIGTFLMRDSSRPGEYSLTVREADEGNAVCHYLIERGE 71
Query: 53 RDDN-------KIGLGTFKPNEVMAAREDATNHPRDSHPCRTQPRC 91
++ KI +F + S +
Sbjct: 72 PKEDGTAAAGVKIANQSFPDIPALLNHFKMRVLTEASLLAAYKKPI 117
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 31.2 bits (70), Expect = 0.083
Identities = 25/137 (18%), Positives = 40/137 (29%), Gaps = 42/137 (30%)
Query: 12 AVQMVAAGGEGCFLVRPSSSSEPLTLTLWYGGRAYNIFIRK-------RDDNKIGLGTFK 64
AV + F S + +T+ + G R Y + D + G
Sbjct: 280 AVAIAETDSWESFF---VSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPS 336
Query: 65 PNEVMAA-----RE------DATNH--PRDSH---PCRTQPRC-VITSRPR---GVVLRW 104
P M + +E + TN P + V++ P+ G+ L
Sbjct: 337 P---MLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTL 393
Query: 105 RL---------SRIMFR 112
R SRI F
Sbjct: 394 RKAKAPSGLDQSRIPFS 410
Score = 25.8 bits (56), Expect = 6.5
Identities = 12/58 (20%), Positives = 20/58 (34%), Gaps = 11/58 (18%)
Query: 70 AAR---EDATNHPRD------SHPCRTQPR--CVITSRPRGVVLRWRLSRIMFRHLAD 116
AA+ A NH +D P + +G +R S ++F + D
Sbjct: 1641 AAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVD 1698
>2el8_A Signal-transducing adaptor protein 2; SH2 domain, phosphotyrosine
binding domain, protein tyrosine kinase, signal
transduction, structural genomics; NMR {Homo sapiens}
Length = 118
Score = 27.8 bits (61), Expect = 0.61
Identities = 10/32 (31%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 2 AWFHSVNRERAVQMVAAGGE-GCFLVRPSSSS 32
+ F V+R A ++ E G L+RPS
Sbjct: 23 SCFLKVSRLEAQLLLERYPECGNLLLRPSGDG 54
>1bg1_A Protein (transcription factor STAT3B); protein-DNA complex,
cytokine activation, complex (transcription factor/DNA),
transcription/DNA complex; HET: DNA PTR; 2.25A {Mus
musculus} SCOP: a.47.1.1 b.2.5.5 d.93.1.1 PDB: 3cwg_A
Length = 596
Score = 27.1 bits (59), Expect = 1.8
Identities = 10/35 (28%), Positives = 20/35 (57%)
Query: 7 VNRERAVQMVAAGGEGCFLVRPSSSSEPLTLTLWY 41
+++ER +++ G FL+R S SS+ +T +
Sbjct: 463 ISKERERAILSTKPPGTFLLRFSESSKEGGVTFTW 497
>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase,
integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB:
2j0k_A*
Length = 656
Score = 27.1 bits (60), Expect = 2.1
Identities = 9/38 (23%), Positives = 18/38 (47%)
Query: 1 MAWFHSVNRERAVQMVAAGGEGCFLVRPSSSSEPLTLT 38
+A F+ V + +G ++ + + EPLT+T
Sbjct: 263 LADFNQVQTIQYSNSEDKDRKGMLQLKIAGAPEPLTVT 300
>3qwy_A Cell death abnormality protein 2; cell engulfment, signaling
protein; 2.52A {Caenorhabditis elegans}
Length = 308
Score = 26.7 bits (58), Expect = 2.3
Identities = 9/32 (28%), Positives = 17/32 (53%), Gaps = 3/32 (9%)
Query: 3 WFH-SVNRERAVQMVAA--GGEGCFLVRPSSS 31
++ ++RE A +++ G FL+R SS
Sbjct: 43 FYFPGMSREEAHKLLGEPQVSIGTFLMRDSSR 74
>1vky_A S-adenosylmethionine:tRNA ribosyltransferase-ISOM; TM0574, struct
genomics, JCSG, protein structure initiative, PSI; 2.00A
{Thermotoga maritima} SCOP: e.53.1.1
Length = 347
Score = 25.9 bits (58), Expect = 4.6
Identities = 8/21 (38%), Positives = 13/21 (61%), Gaps = 4/21 (19%)
Query: 58 IGLGTFKPNEVMAAREDATNH 78
+G+GTF+P +V E+ H
Sbjct: 213 VGIGTFRPVKV----EEVEKH 229
>1bf5_A Signal transducer and activator of transcription 1-alpha/beta;
complex (SH2 domain/DNA), SH2 domain, transcription
factor; HET: DNA PTR; 2.90A {Homo sapiens} SCOP:
a.47.1.1 b.2.5.5 d.93.1.1
Length = 575
Score = 26.0 bits (56), Expect = 4.8
Identities = 11/38 (28%), Positives = 19/38 (50%)
Query: 7 VNRERAVQMVAAGGEGCFLVRPSSSSEPLTLTLWYGGR 44
+++ER ++ G FL+R S SS +T + R
Sbjct: 447 ISKERERALLKDQQPGTFLLRFSESSREGAITFTWVER 484
>2bgs_A Aldose reductase; holoenzyme, aldo/keto reductase,
oxidoreductase; HET: NDP; 1.64A {Hordeum vulgare} PDB:
2bgq_A* 2vdg_A*
Length = 344
Score = 25.7 bits (57), Expect = 5.8
Identities = 5/20 (25%), Positives = 10/20 (50%), Gaps = 2/20 (10%)
Query: 58 IGLGTFK--PNEVMAAREDA 75
+GLGT++ + + R
Sbjct: 51 VGLGTWRAGSDTAHSVRTAI 70
>1bte_A Protein (activin receptor type II); serine kinase, ligand binding
domain, three-finger transferase; HET: NAG; 1.50A {Mus
musculus} SCOP: g.7.1.3 PDB: 2goo_C* 1lx5_B*
Length = 97
Score = 24.7 bits (53), Expect = 6.9
Identities = 4/20 (20%), Positives = 6/20 (30%)
Query: 81 DSHPCRTQPRCVITSRPRGV 100
D C + C+ V
Sbjct: 57 DDINCYDRTDCIEKKDSPEV 76
>4fao_E Activin receptor type-2B; TGF-beta, CTK, cystine knot,
extracellular domain, signaling protein-signaling
protein complex; HET: NAG; 3.36A {Homo sapiens}
Length = 124
Score = 24.8 bits (53), Expect = 6.9
Identities = 6/20 (30%), Positives = 7/20 (35%)
Query: 81 DSHPCRTQPRCVITSRPRGV 100
D C + CV T V
Sbjct: 64 DDFNCYDRQECVATEENPQV 83
>1yy3_A S-adenosylmethionine:tRNA ribosyltransferase- isomerase;
beta-barrel, QUEA, quein queuosine, tRNA- modification;
2.88A {Bacillus subtilis}
Length = 346
Score = 25.1 bits (56), Expect = 7.9
Identities = 7/21 (33%), Positives = 11/21 (52%), Gaps = 4/21 (19%)
Query: 58 IGLGTFKPNEVMAAREDATNH 78
+GLGTF+P ++ H
Sbjct: 210 VGLGTFRPVSA----DEVEEH 226
>1wdi_A Hypothetical protein TT0907; structural genomics, riken structural
genomics/proteomics initiative, RSGI, unknown function;
HET: CIT; 2.10A {Thermus thermophilus} SCOP: e.53.1.1
Length = 345
Score = 25.1 bits (56), Expect = 8.7
Identities = 8/21 (38%), Positives = 11/21 (52%), Gaps = 5/21 (23%)
Query: 58 IGLGTFKPNEVMAAREDATNH 78
+G GTF+P V + D H
Sbjct: 211 VGPGTFRP--V---KGDPEKH 226
>2h62_D ACVR2B protein; TGF-beta superfamily, ligand-receptor complex,
hormone/growth factor complex; 1.85A {Homo sapiens}
SCOP: g.7.1.3 PDB: 1nys_A 1nyu_A 2h64_C 1s4y_A
Length = 98
Score = 24.3 bits (52), Expect = 9.8
Identities = 6/20 (30%), Positives = 7/20 (35%)
Query: 81 DSHPCRTQPRCVITSRPRGV 100
D C + CV T V
Sbjct: 62 DDFNCYDRQECVATEENPQV 81
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.325 0.136 0.445
Gapped
Lambda K H
0.267 0.0482 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,964,983
Number of extensions: 101832
Number of successful extensions: 407
Number of sequences better than 10.0: 1
Number of HSP's gapped: 386
Number of HSP's successfully gapped: 98
Length of query: 128
Length of database: 6,701,793
Length adjustment: 83
Effective length of query: 45
Effective length of database: 4,384,350
Effective search space: 197295750
Effective search space used: 197295750
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (24.0 bits)