Query psy9698
Match_columns 123
No_of_seqs 130 out of 1071
Neff 6.2
Searched_HMMs 46136
Date Fri Aug 16 17:19:15 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9698.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9698hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02835 oxidoreductase 99.9 7.7E-25 1.7E-29 187.5 9.6 90 1-106 442-535 (539)
2 TIGR03388 ascorbase L-ascorbat 99.9 1.7E-24 3.8E-29 185.1 8.6 87 1-103 453-539 (541)
3 TIGR03389 laccase laccase, pla 99.9 3.4E-24 7.5E-29 183.1 9.8 87 1-102 449-539 (539)
4 PLN02604 oxidoreductase 99.9 2.9E-24 6.3E-29 184.6 8.9 89 1-105 476-564 (566)
5 PLN02191 L-ascorbate oxidase 99.9 2.2E-24 4.9E-29 185.7 8.2 90 1-106 476-565 (574)
6 PLN02792 oxidoreductase 99.9 2.1E-23 4.5E-28 178.7 9.9 90 1-106 434-527 (536)
7 PLN02991 oxidoreductase 99.9 3.2E-23 6.9E-28 177.8 9.5 90 1-106 441-534 (543)
8 PLN02168 copper ion binding / 99.9 6.3E-23 1.4E-27 176.0 9.1 87 1-103 446-542 (545)
9 PLN02354 copper ion binding / 99.9 9.5E-23 2.1E-27 175.1 10.2 90 1-106 449-542 (552)
10 PLN00044 multi-copper oxidase- 99.9 6.3E-23 1.4E-27 177.5 8.6 90 1-106 464-558 (596)
11 KOG1263|consensus 99.9 2E-22 4.4E-27 173.4 9.3 92 1-106 464-559 (563)
12 PF07731 Cu-oxidase_2: Multico 99.8 4.6E-20 9.9E-25 130.7 6.4 57 32-88 80-136 (138)
13 TIGR03390 ascorbOXfungal L-asc 99.8 8.7E-20 1.9E-24 156.3 6.6 75 1-90 451-535 (538)
14 TIGR01480 copper_res_A copper- 99.3 2.1E-12 4.7E-17 112.1 5.0 47 40-86 540-586 (587)
15 PRK10883 FtsI repressor; Provi 99.3 3.4E-12 7.5E-17 108.1 5.1 45 41-87 420-468 (471)
16 PRK10965 multicopper oxidase; 99.3 6.6E-12 1.4E-16 107.7 5.6 46 40-86 473-522 (523)
17 COG2132 SufI Putative multicop 99.2 8.8E-12 1.9E-16 104.5 5.2 50 38-87 400-449 (451)
18 TIGR02376 Cu_nitrite_red nitri 98.6 5.1E-08 1.1E-12 78.9 5.4 55 45-99 99-157 (311)
19 PLN02604 oxidoreductase 98.0 6.5E-06 1.4E-10 71.5 5.0 45 45-89 101-145 (566)
20 PF07732 Cu-oxidase_3: Multico 97.9 2.1E-05 4.5E-10 55.3 5.3 43 46-88 72-115 (117)
21 TIGR03388 ascorbase L-ascorbat 97.5 0.00019 4.1E-09 62.0 5.4 44 46-89 79-122 (541)
22 TIGR02376 Cu_nitrite_red nitri 97.4 0.00038 8.3E-09 56.4 5.7 45 43-87 251-296 (311)
23 TIGR03095 rusti_cyanin rusticy 97.3 0.00039 8.5E-09 51.0 4.2 34 53-86 114-147 (148)
24 TIGR02656 cyanin_plasto plasto 97.2 0.00057 1.2E-08 46.4 4.5 40 44-87 60-99 (99)
25 PF00127 Copper-bind: Copper b 96.8 0.0055 1.2E-07 41.4 6.3 40 44-87 60-99 (99)
26 PLN02191 L-ascorbate oxidase 96.7 0.0029 6.3E-08 55.3 5.0 43 46-88 101-143 (574)
27 COG4454 Uncharacterized copper 96.3 0.012 2.6E-07 43.9 5.9 46 42-87 112-157 (158)
28 TIGR01480 copper_res_A copper- 96.1 0.009 2E-07 52.5 5.0 43 46-88 120-162 (587)
29 PLN02168 copper ion binding / 95.5 0.024 5.2E-07 49.5 5.0 44 46-89 102-146 (545)
30 TIGR03389 laccase laccase, pla 95.4 0.027 5.8E-07 48.8 5.1 43 46-89 80-123 (539)
31 PLN02354 copper ion binding / 95.4 0.025 5.3E-07 49.4 4.7 45 45-89 102-147 (552)
32 PLN02835 oxidoreductase 95.3 0.032 7E-07 48.5 5.2 43 46-88 105-148 (539)
33 KOG1263|consensus 95.3 0.039 8.5E-07 48.4 5.7 49 45-93 103-152 (563)
34 PLN00044 multi-copper oxidase- 94.9 0.046 1E-06 48.3 4.9 45 45-89 104-149 (596)
35 PRK02710 plastocyanin; Provisi 94.8 0.062 1.3E-06 37.6 4.5 37 46-86 82-118 (119)
36 PLN02792 oxidoreductase 94.6 0.052 1.1E-06 47.3 4.5 44 45-88 91-135 (536)
37 TIGR02375 pseudoazurin pseudoa 94.5 0.087 1.9E-06 37.2 4.7 32 55-88 57-88 (116)
38 PF00394 Cu-oxidase: Multicopp 94.3 0.12 2.6E-06 37.5 5.3 48 39-86 103-155 (159)
39 PF13473 Cupredoxin_1: Cupredo 94.2 0.099 2.1E-06 35.3 4.4 30 46-75 68-97 (104)
40 PRK10965 multicopper oxidase; 94.1 0.092 2E-06 45.6 4.9 44 46-89 118-166 (523)
41 PRK02888 nitrous-oxide reducta 93.9 0.14 3E-06 45.6 5.8 44 44-87 589-633 (635)
42 TIGR03096 nitroso_cyanin nitro 93.9 0.09 2E-06 38.3 3.9 29 45-73 93-121 (135)
43 PLN02991 oxidoreductase 93.6 0.13 2.8E-06 45.0 4.9 45 45-89 103-148 (543)
44 PRK10883 FtsI repressor; Provi 93.5 0.17 3.6E-06 43.3 5.5 43 47-89 119-166 (471)
45 TIGR03102 halo_cynanin halocya 91.8 0.34 7.4E-06 34.2 4.3 30 56-87 86-115 (115)
46 TIGR03390 ascorbOXfungal L-asc 90.9 0.44 9.5E-06 41.4 5.0 42 47-89 87-130 (538)
47 PF06525 SoxE: Sulfocyanin (So 85.0 2.3 4.9E-05 32.9 5.0 42 47-88 146-187 (196)
48 TIGR02657 amicyanin amicyanin. 83.6 2.4 5.2E-05 27.5 4.1 33 48-86 50-82 (83)
49 TIGR03094 sulfo_cyanin sulfocy 80.9 4.2 9E-05 31.3 5.0 42 47-88 145-186 (195)
50 COG3794 PetE Plastocyanin [Ene 80.1 4.4 9.5E-05 29.2 4.7 30 56-87 98-127 (128)
51 PF00116 COX2: Cytochrome C ox 77.0 12 0.00027 26.1 6.2 40 47-86 79-119 (120)
52 TIGR02866 CoxB cytochrome c ox 73.0 9.5 0.00021 28.8 5.1 46 43-88 146-192 (201)
53 COG2132 SufI Putative multicop 64.2 11 0.00024 31.8 4.2 47 43-89 105-151 (451)
54 TIGR02695 azurin azurin. Azuri 59.3 22 0.00048 25.6 4.4 45 40-85 77-124 (125)
55 PF05938 Self-incomp_S1: Plant 53.9 41 0.00089 22.6 5.0 39 45-86 28-68 (110)
56 PF10989 DUF2808: Protein of u 49.7 26 0.00057 25.1 3.6 27 48-74 99-129 (146)
57 COG1622 CyoA Heme/copper-type 48.4 41 0.00088 26.7 4.8 48 42-89 165-213 (247)
58 KOG3878|consensus 42.4 1E+02 0.0022 26.2 6.3 43 45-87 323-365 (469)
59 COG4263 NosZ Nitrous oxide red 32.3 39 0.00084 29.9 2.5 47 40-86 588-635 (637)
60 PF14392 zf-CCHC_4: Zinc knuck 29.4 1.1E+02 0.0023 17.8 3.5 41 37-77 3-44 (49)
61 PF06280 DUF1034: Fn3-like dom 28.8 70 0.0015 21.5 2.9 22 42-63 60-81 (112)
62 MTH00047 COX2 cytochrome c oxi 28.6 2.4E+02 0.0052 21.4 6.1 41 47-87 149-190 (194)
63 PRK10378 inactive ferrous ion 28.4 92 0.002 26.3 4.0 36 47-87 81-116 (375)
64 MTH00140 COX2 cytochrome c oxi 28.2 1.3E+02 0.0029 23.2 4.7 41 47-87 173-214 (228)
65 PF02191 OLF: Olfactomedin-lik 28.1 1.1E+02 0.0025 24.0 4.3 43 32-74 91-144 (250)
66 TIGR01433 CyoA cytochrome o ub 25.4 1.1E+02 0.0024 23.7 3.8 41 47-87 172-213 (226)
67 TIGR01432 QOXA cytochrome aa3 24.4 1.2E+02 0.0026 23.1 3.8 41 47-87 163-204 (217)
68 PF10670 DUF4198: Domain of un 20.4 1E+02 0.0022 22.5 2.5 17 56-72 195-211 (215)
69 PTZ00047 cytochrome c oxidase 20.1 1.9E+02 0.0041 21.7 4.0 40 48-87 107-147 (162)
No 1
>PLN02835 oxidoreductase
Probab=99.91 E-value=7.7e-25 Score=187.49 Aligned_cols=90 Identities=16% Similarity=0.263 Sum_probs=77.6
Q ss_pred CEEEeecCCCCCCCcccccHHHHHHhccCCCccccCCCCCceeeeEEeCCCCEEEEEEEecCCceEEEeecCccccccCc
Q psy9698 1 MYILKQGKIPPNVDKGLFLSQLIRQLDQEGPRLRTTQPRPIVKDTVGNLPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGM 80 (123)
Q Consensus 1 f~vlg~g~~~~~~~~~~~~~~e~~~~~~~g~~~~~n~~~p~~rDTv~v~pg~~~~irf~adnpG~Wl~HCHi~~H~~~GM 80 (123)
|||||+|. ++|.. .. ...+|+.||++|||+.|++++|++|||+|||||.|+||||+.+|+..||
T Consensus 442 F~Vlg~G~-g~~~~-----------~~----~~~~nl~nP~~RDTv~vp~~gw~~IrF~aDNPG~Wl~HCHi~~H~~~Gm 505 (539)
T PLN02835 442 FWVVGYGS-GQWTP-----------AK----RSLYNLVDALTRHTAQVYPKSWTTILVSLDNQGMWNMRSAIWERQYLGQ 505 (539)
T ss_pred EEEEeccC-CCCCc-----------cc----ccccCCCCCCccceEEeCCCCEEEEEEECcCCEEeeeeecchhhhhccc
Confidence 89999997 44431 11 1146899999999999999999999999999999999999999999999
Q ss_pred eEEEEeecc----CccCCCCCCCCCCccCC
Q psy9698 81 TLVFQVGDR----KQFVRAPPHFPQCDNFQ 106 (123)
Q Consensus 81 ~~~~~V~~~----~~~~~~p~~~~~C~~~~ 106 (123)
+++|+|++. ++++++|++++.||..+
T Consensus 506 ~~~~~V~~~~~~~~~~~~~P~~~~~Cg~~~ 535 (539)
T PLN02835 506 QFYLRVWNQVHSLANEYDIPDNALLCGKAI 535 (539)
T ss_pred EEEEEEccCCCccccccCCCccccccccCc
Confidence 999999754 68889999999998654
No 2
>TIGR03388 ascorbase L-ascorbate oxidase, plant type. Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases.
Probab=99.91 E-value=1.7e-24 Score=185.06 Aligned_cols=87 Identities=30% Similarity=0.560 Sum_probs=76.4
Q ss_pred CEEEeecCCCCCCCcccccHHHHHHhccCCCccccCCCCCceeeeEEeCCCCEEEEEEEecCCceEEEeecCccccccCc
Q psy9698 1 MYILKQGKIPPNVDKGLFLSQLIRQLDQEGPRLRTTQPRPIVKDTVGNLPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGM 80 (123)
Q Consensus 1 f~vlg~g~~~~~~~~~~~~~~e~~~~~~~g~~~~~n~~~p~~rDTv~v~pg~~~~irf~adnpG~Wl~HCHi~~H~~~GM 80 (123)
|||||+|. +.|.. + .+ ...+|++||++|||+.|++++|++|||++||||.|+||||+.+|+..||
T Consensus 453 F~vlg~g~-g~~~~----~------~~----~~~~n~~nP~~RDTv~vp~~gwvvIRF~adNPG~W~~HCHi~~H~~~GM 517 (541)
T TIGR03388 453 FWVLGYGE-GKFRP----G------VD----EKSYNLKNPPLRNTVVIFPYGWTALRFVADNPGVWAFHCHIEPHLHMGM 517 (541)
T ss_pred eEEEeecc-CCCCc----c------cC----cccccCCCCCEeceEEeCCCceEEEEEECCCCeEeeeeccchhhhhccc
Confidence 89999997 34431 1 11 1258999999999999999999999999999999999999999999999
Q ss_pred eEEEEeeccCccCCCCCCCCCCc
Q psy9698 81 TLVFQVGDRKQFVRAPPHFPQCD 103 (123)
Q Consensus 81 ~~~~~V~~~~~~~~~p~~~~~C~ 103 (123)
+++|.++ .++++++|+++++|+
T Consensus 518 ~~~~~e~-~~~~~~~P~~~~~C~ 539 (541)
T TIGR03388 518 GVVFAEG-VEKVGKLPKEALGCG 539 (541)
T ss_pred EEEEecc-ccccCCCCccccCCC
Confidence 9999987 578999999999997
No 3
>TIGR03389 laccase laccase, plant. Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2), often several from a single plant species, and additional, uncharacterized, closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity, and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate.
Probab=99.91 E-value=3.4e-24 Score=183.08 Aligned_cols=87 Identities=26% Similarity=0.625 Sum_probs=74.7
Q ss_pred CEEEeecCCCCCCCcccccHHHHHHhccCCCccccCCCCCceeeeEEeCCCCEEEEEEEecCCceEEEeecCccccccCc
Q psy9698 1 MYILKQGKIPPNVDKGLFLSQLIRQLDQEGPRLRTTQPRPIVKDTVGNLPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGM 80 (123)
Q Consensus 1 f~vlg~g~~~~~~~~~~~~~~e~~~~~~~g~~~~~n~~~p~~rDTv~v~pg~~~~irf~adnpG~Wl~HCHi~~H~~~GM 80 (123)
|||||+|. +.|.. + .+ ...+|+.||++|||+.|++++|++|||++||||.|+||||+.+|+..||
T Consensus 449 F~Vlg~g~-g~~~~----~------~~----~~~~nl~nP~rRDTv~vp~~g~vvirf~adNPG~W~~HCHi~~H~~~Gm 513 (539)
T TIGR03389 449 FFVVGTGF-GNFDP----K------KD----PAKFNLVDPPERNTVGVPTGGWAAIRFVADNPGVWFMHCHLEVHTTWGL 513 (539)
T ss_pred eEEEEecc-CCCCc----c------cC----ccccccCCCCeeeeEEcCCCceEEEEEecCCCeEEEEEecccchhhhcc
Confidence 89999997 44431 0 11 1258999999999999999999999999999999999999999999999
Q ss_pred eEEEEeec----cCccCCCCCCCCCC
Q psy9698 81 TLVFQVGD----RKQFVRAPPHFPQC 102 (123)
Q Consensus 81 ~~~~~V~~----~~~~~~~p~~~~~C 102 (123)
+++|.+.+ .++++++|+++|+|
T Consensus 514 ~~~~~~~~~~~~~~~~~~~p~~~~~c 539 (539)
T TIGR03389 514 KMAFLVDNGKGPNQSLLPPPSDLPSC 539 (539)
T ss_pred eEEEEEccCCCCccccCCCCccCCCC
Confidence 99998853 35789999999999
No 4
>PLN02604 oxidoreductase
Probab=99.90 E-value=2.9e-24 Score=184.64 Aligned_cols=89 Identities=31% Similarity=0.555 Sum_probs=77.5
Q ss_pred CEEEeecCCCCCCCcccccHHHHHHhccCCCccccCCCCCceeeeEEeCCCCEEEEEEEecCCceEEEeecCccccccCc
Q psy9698 1 MYILKQGKIPPNVDKGLFLSQLIRQLDQEGPRLRTTQPRPIVKDTVGNLPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGM 80 (123)
Q Consensus 1 f~vlg~g~~~~~~~~~~~~~~e~~~~~~~g~~~~~n~~~p~~rDTv~v~pg~~~~irf~adnpG~Wl~HCHi~~H~~~GM 80 (123)
|||||+|. ++|.. + .+ ...+|+.||++|||+.|++++|++|||++||||.|+|||||.+|+..||
T Consensus 476 F~Vlg~G~-G~~~~----~------~~----~~~~nl~nP~rRDTv~vp~~gwvvIRF~aDNPG~WlfHCHI~~Hl~~GM 540 (566)
T PLN02604 476 FWVLGYGE-GKFNM----S------SD----PKKYNLVDPIMKNTVPVHPYGWTALRFRADNPGVWAFHCHIESHFFMGM 540 (566)
T ss_pred eEEEEecC-CCCCc----c------cc----ccccCCCCCCccceEEeCCCceEEEEEECCCCeEeeEeecchhHhhcCC
Confidence 89999997 34431 1 11 1258999999999999999999999999999999999999999999999
Q ss_pred eEEEEeeccCccCCCCCCCCCCccC
Q psy9698 81 TLVFQVGDRKQFVRAPPHFPQCDNF 105 (123)
Q Consensus 81 ~~~~~V~~~~~~~~~p~~~~~C~~~ 105 (123)
+++|.++ +++++++|..+++|+..
T Consensus 541 ~~v~~e~-~~~~~~~p~~~~~C~~~ 564 (566)
T PLN02604 541 GVVFEEG-IERVGKLPSSIMGCGES 564 (566)
T ss_pred EEEEeeC-hhhccCCCCCcCccccC
Confidence 9999987 67999999999999854
No 5
>PLN02191 L-ascorbate oxidase
Probab=99.90 E-value=2.2e-24 Score=185.75 Aligned_cols=90 Identities=28% Similarity=0.539 Sum_probs=77.9
Q ss_pred CEEEeecCCCCCCCcccccHHHHHHhccCCCccccCCCCCceeeeEEeCCCCEEEEEEEecCCceEEEeecCccccccCc
Q psy9698 1 MYILKQGKIPPNVDKGLFLSQLIRQLDQEGPRLRTTQPRPIVKDTVGNLPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGM 80 (123)
Q Consensus 1 f~vlg~g~~~~~~~~~~~~~~e~~~~~~~g~~~~~n~~~p~~rDTv~v~pg~~~~irf~adnpG~Wl~HCHi~~H~~~GM 80 (123)
|||||+|. ++|.. ++ +.. .+|+.||++|||+.|++++|++|||++||||.|+||||+.+|+..||
T Consensus 476 F~Vlg~G~-g~~~~----~~------~~~----~~nl~nP~rRDTv~vp~~Gw~vIRf~aDNPG~Wl~HCHi~~Hl~~Gm 540 (574)
T PLN02191 476 FWVLGYGD-GKFKP----GI------DEK----TYNLKNPPLRNTAILYPYGWTAIRFVTDNPGVWFFHCHIEPHLHMGM 540 (574)
T ss_pred eEEEEecC-CCCCc----cc------Ccc----cccCCCCCcCCeEEeCCCCEEEEEEECCCCEEEEEecCchhhhhcCC
Confidence 89999998 44431 11 111 48999999999999999999999999999999999999999999999
Q ss_pred eEEEEeeccCccCCCCCCCCCCccCC
Q psy9698 81 TLVFQVGDRKQFVRAPPHFPQCDNFQ 106 (123)
Q Consensus 81 ~~~~~V~~~~~~~~~p~~~~~C~~~~ 106 (123)
..+|..+ .+.++++|.+++.|+.|+
T Consensus 541 ~~~~~e~-~~~~~~~p~~~~~C~~~~ 565 (574)
T PLN02191 541 GVVFAEG-LNRIGKIPDEALGCGLTK 565 (574)
T ss_pred EEEEecC-hhhccCCCcchhhhhccc
Confidence 9999876 578888999999999886
No 6
>PLN02792 oxidoreductase
Probab=99.89 E-value=2.1e-23 Score=178.68 Aligned_cols=90 Identities=19% Similarity=0.270 Sum_probs=77.7
Q ss_pred CEEEeecCCCCCCCcccccHHHHHHhccCCCccccCCCCCceeeeEEeCCCCEEEEEEEecCCceEEEeecCccccccCc
Q psy9698 1 MYILKQGKIPPNVDKGLFLSQLIRQLDQEGPRLRTTQPRPIVKDTVGNLPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGM 80 (123)
Q Consensus 1 f~vlg~g~~~~~~~~~~~~~~e~~~~~~~g~~~~~n~~~p~~rDTv~v~pg~~~~irf~adnpG~Wl~HCHi~~H~~~GM 80 (123)
|||||+|. ++|.. .++ ..||+.||++|||+.|++++|++|||++||||+|+||||+..|+..||
T Consensus 434 F~Vvg~G~-G~~~~-----------~~~----~~~Nl~nP~~RdTv~v~~~gw~aIRf~aDNPGvW~~HCh~~~h~~~Gm 497 (536)
T PLN02792 434 FWVVGINK-GIWSR-----------ASR----REYNLKDAISRSTTQVYPESWTAVYVALDNVGMWNLRSQFWARQYLGQ 497 (536)
T ss_pred eEEEeecC-CCCCc-----------ccc----cccCcCCCCccceEEECCCCEEEEEEEeeCCEEEeeeEcchhccccce
Confidence 89999998 45531 112 258999999999999999999999999999999999999999999999
Q ss_pred eEEEEeec----cCccCCCCCCCCCCccCC
Q psy9698 81 TLVFQVGD----RKQFVRAPPHFPQCDNFQ 106 (123)
Q Consensus 81 ~~~~~V~~----~~~~~~~p~~~~~C~~~~ 106 (123)
+.+|.|.+ .+.++++|++++.||..+
T Consensus 498 ~~~~~v~~~~~~~~~~~~pP~~~~~Cg~~~ 527 (536)
T PLN02792 498 QFYLRVYSPTHSLKDEYPLPKNALLCGRAS 527 (536)
T ss_pred EEEEEEccCCCccccccCCCcccCcccccc
Confidence 99998863 257889999999998554
No 7
>PLN02991 oxidoreductase
Probab=99.89 E-value=3.2e-23 Score=177.81 Aligned_cols=90 Identities=16% Similarity=0.221 Sum_probs=76.7
Q ss_pred CEEEeecCCCCCCCcccccHHHHHHhccCCCccccCCCCCceeeeEEeCCCCEEEEEEEecCCceEEEeecCccccccCc
Q psy9698 1 MYILKQGKIPPNVDKGLFLSQLIRQLDQEGPRLRTTQPRPIVKDTVGNLPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGM 80 (123)
Q Consensus 1 f~vlg~g~~~~~~~~~~~~~~e~~~~~~~g~~~~~n~~~p~~rDTv~v~pg~~~~irf~adnpG~Wl~HCHi~~H~~~GM 80 (123)
|||||+|. ++|.. .++ ..+|+.||++|||+.|++++|++|||++||||.|+||||+..|+..||
T Consensus 441 F~Vvg~G~-G~f~~-----------~~~----~~~Nl~nP~rRDTv~vp~~Gw~vIRF~aDNPG~W~~HCHi~~h~~~gm 504 (543)
T PLN02991 441 FYVVGMEL-GKWSA-----------ASR----KVYNLNDAVSRCTVQVYPRSWTAIYVSLDNVGMWNLRSELWERQYLGQ 504 (543)
T ss_pred eEEEEeCC-CCCCc-----------ccc----cccCCCCCCcccEEEECCCCEEEEEEECCCCEEeeeeeCccccccccE
Confidence 89999997 45531 111 248999999999999999999999999999999999999999999999
Q ss_pred eEEEEeec----cCccCCCCCCCCCCccCC
Q psy9698 81 TLVFQVGD----RKQFVRAPPHFPQCDNFQ 106 (123)
Q Consensus 81 ~~~~~V~~----~~~~~~~p~~~~~C~~~~ 106 (123)
+.+++|.+ .++++++|++++.||..+
T Consensus 505 ~~~~~v~~~~~~~~~~~~~P~~~~~Cg~~~ 534 (543)
T PLN02991 505 QFYMRVYTTSTSLRDEYLIPKNALLCGRAT 534 (543)
T ss_pred EEEEEecCCCCccccccCCCcccCccccCC
Confidence 99998853 257889999999997443
No 8
>PLN02168 copper ion binding / pectinesterase
Probab=99.88 E-value=6.3e-23 Score=176.03 Aligned_cols=87 Identities=16% Similarity=0.277 Sum_probs=73.6
Q ss_pred CEEEeecCCCCCCCcccccHHHHHHhccCCCccccCCCCCceeeeEEeCCCCEEEEEEEecCCceEEEeecCccccccCc
Q psy9698 1 MYILKQGKIPPNVDKGLFLSQLIRQLDQEGPRLRTTQPRPIVKDTVGNLPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGM 80 (123)
Q Consensus 1 f~vlg~g~~~~~~~~~~~~~~e~~~~~~~g~~~~~n~~~p~~rDTv~v~pg~~~~irf~adnpG~Wl~HCHi~~H~~~GM 80 (123)
|||||+|. +.|.. .++ ..+|+.||++|||+.|++++|++|||+|||||.|+||||+..|+..||
T Consensus 446 F~Vvg~g~-g~~~~-----------~~~----~~~Nl~nP~rRDTv~vp~~Gw~vIRF~aDNPG~Wl~HCHi~~~~h~g~ 509 (545)
T PLN02168 446 FFVVGYGF-GAWSE-----------SKK----AGYNLVDAVSRSTVQVYPYSWTAILIAMDNQGMWNVRSQKAEQWYLGQ 509 (545)
T ss_pred eEEEECCC-CCCCc-----------ccc----ccCCCCCCCccceEEeCCCCEEEEEEEccCCeEEeeeecCcccceecC
Confidence 89999997 45541 111 248999999999999999999999999999999999999999999999
Q ss_pred eEEEEee----------ccCccCCCCCCCCCCc
Q psy9698 81 TLVFQVG----------DRKQFVRAPPHFPQCD 103 (123)
Q Consensus 81 ~~~~~V~----------~~~~~~~~p~~~~~C~ 103 (123)
.+.+.|. ..+.++++|+++++||
T Consensus 510 gl~~~v~~~~~e~p~~~~~~~~~~~P~~~~~cg 542 (545)
T PLN02168 510 ELYMRVKGEGEEDPSTIPVRDENPIPGNVIRCG 542 (545)
T ss_pred cEEEEEEcccccCccccccccccCCChhhcccc
Confidence 9888773 1246778999999997
No 9
>PLN02354 copper ion binding / oxidoreductase
Probab=99.88 E-value=9.5e-23 Score=175.09 Aligned_cols=90 Identities=16% Similarity=0.239 Sum_probs=75.1
Q ss_pred CEEEeecCCCCCCCcccccHHHHHHhccCCCccccCCCCCceeeeEEeCCCCEEEEEEEecCCceEEEeecCccccccCc
Q psy9698 1 MYILKQGKIPPNVDKGLFLSQLIRQLDQEGPRLRTTQPRPIVKDTVGNLPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGM 80 (123)
Q Consensus 1 f~vlg~g~~~~~~~~~~~~~~e~~~~~~~g~~~~~n~~~p~~rDTv~v~pg~~~~irf~adnpG~Wl~HCHi~~H~~~GM 80 (123)
|||||+|. +.|.. .+ ..++|+.||++|||+.|+++||++|||++||||+|+||||+..|+..||
T Consensus 449 F~Vlg~G~-G~~~~-----------~~----~~~~nl~nP~rRDTv~vp~~Gw~vIRF~aDNPGvW~~HCHi~~H~~~g~ 512 (552)
T PLN02354 449 FFAVAVEP-GTWTP-----------EK----RKNYNLLDAVSRHTVQVYPKSWAAILLTFDNAGMWNIRSENWERRYLGQ 512 (552)
T ss_pred EEEEeecC-CCCCc-----------cc----cccCCcCCCCccceEEeCCCCeEEEEEEecCCeEEeeeccccccccccc
Confidence 89999998 44431 11 1258999999999999999999999999999999999999999999999
Q ss_pred eEEEEeecc----CccCCCCCCCCCCccCC
Q psy9698 81 TLVFQVGDR----KQFVRAPPHFPQCDNFQ 106 (123)
Q Consensus 81 ~~~~~V~~~----~~~~~~p~~~~~C~~~~ 106 (123)
...+.|.+. .+++++|++.+.|+..+
T Consensus 513 ~l~~~v~~~~~~~~~~~~~P~~~~~C~~~~ 542 (552)
T PLN02354 513 QLYASVLSPERSLRDEYNMPENALLCGKVK 542 (552)
T ss_pred eEEEEEeCCccccCcCCCCCcccccccccc
Confidence 999987532 34556899999998654
No 10
>PLN00044 multi-copper oxidase-related protein; Provisional
Probab=99.88 E-value=6.3e-23 Score=177.50 Aligned_cols=90 Identities=16% Similarity=0.276 Sum_probs=77.7
Q ss_pred CEEEeecCCCCCCCcccccHHHHHHhccCCCccccCCCCCceeeeEEeCCCCEEEEEEEecCCceEEEeecCccccccCc
Q psy9698 1 MYILKQGKIPPNVDKGLFLSQLIRQLDQEGPRLRTTQPRPIVKDTVGNLPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGM 80 (123)
Q Consensus 1 f~vlg~g~~~~~~~~~~~~~~e~~~~~~~g~~~~~n~~~p~~rDTv~v~pg~~~~irf~adnpG~Wl~HCHi~~H~~~GM 80 (123)
|||||+|. ++|.. .+ ...||++||++|||+.|++++|++|||++||||.|+||||+..|+..||
T Consensus 464 F~Vvg~G~-G~~~~-----------~~----~~~~Nl~nPp~RdTv~vp~~gW~aIRF~aDNPG~W~lHCH~~~h~~~Gm 527 (596)
T PLN00044 464 FFVVGMDY-GLWTD-----------NS----RGTYNKWDGVARSTIQVFPGAWTAILVFLDNAGIWNLRVENLDAWYLGQ 527 (596)
T ss_pred EEEEeecC-CCCCC-----------Cc----ccccccCCCCccceEEeCCCCeEEEEEecCCCEEehhhccCchhhcccC
Confidence 89999998 56541 12 2258999999999999999999999999999999999999999999999
Q ss_pred eEEEEeec-----cCccCCCCCCCCCCccCC
Q psy9698 81 TLVFQVGD-----RKQFVRAPPHFPQCDNFQ 106 (123)
Q Consensus 81 ~~~~~V~~-----~~~~~~~p~~~~~C~~~~ 106 (123)
..+|.|.+ .+.++++|++++.||..+
T Consensus 528 ~~~~~v~~~~~~~~~~~~~pP~~~~~Cg~~~ 558 (596)
T PLN00044 528 EVYINVVNPEDNSNKTVLPIPDNAIFCGALS 558 (596)
T ss_pred cEEEEEecCCCCccccccCCCcccCcccccc
Confidence 99998752 247888999999998664
No 11
>KOG1263|consensus
Probab=99.87 E-value=2e-22 Score=173.37 Aligned_cols=92 Identities=32% Similarity=0.585 Sum_probs=79.0
Q ss_pred CEEEeecCCCCCCCcccccHHHHHHhccCCCccccCCCCCceeeeEEeCCCCEEEEEEEecCCceEEEeecCccccccCc
Q psy9698 1 MYILKQGKIPPNVDKGLFLSQLIRQLDQEGPRLRTTQPRPIVKDTVGNLPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGM 80 (123)
Q Consensus 1 f~vlg~g~~~~~~~~~~~~~~e~~~~~~~g~~~~~n~~~p~~rDTv~v~pg~~~~irf~adnpG~Wl~HCHi~~H~~~GM 80 (123)
|||||+|. ++|.+ . .|+ ...||+.+|+.||||.|+||+|++|||.|||||+|++|||+.+|+..||
T Consensus 464 F~Vvg~g~-G~~~~-~---------~d~---~~~yNl~dp~~R~Tv~V~pggw~aIrf~adNPG~W~~HCHie~H~~~G~ 529 (563)
T KOG1263|consen 464 FYVVGYGF-GNWDP-A---------KDP---RKKYNLVDPVSRDTVQVPPGGWTAIRFVADNPGVWLMHCHIEDHLYLGM 529 (563)
T ss_pred EEEEEecc-cccCc-C---------cCh---hhhcccCCCcccceEEeCCCCEEEEEEEcCCCcEEEEEEecHHHHhccC
Confidence 89999988 56652 1 022 1368999999999999999999999999999999999999999999999
Q ss_pred eEEEEeecc----CccCCCCCCCCCCccCC
Q psy9698 81 TLVFQVGDR----KQFVRAPPHFPQCDNFQ 106 (123)
Q Consensus 81 ~~~~~V~~~----~~~~~~p~~~~~C~~~~ 106 (123)
..+|.|.+. ..+.++|.+.++||.-+
T Consensus 530 ~~~f~V~~~~~~~~~~~~~P~~~~~cg~~~ 559 (563)
T KOG1263|consen 530 ETVFIVGNGEESLSSEYPPPKNLPKCGRAS 559 (563)
T ss_pred eEEEEEeCCCccCCcCCCCCCCcccccccC
Confidence 999999743 35668999999999875
No 12
>PF07731 Cu-oxidase_2: Multicopper oxidase; InterPro: IPR011706 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 2 domains.; GO: 0005507 copper ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GDC_C 3ZX1_A 2YAH_A 2YAR_A 2YAQ_A 2YAO_A 2YAM_A 2YAF_A 2YAP_A 2XU9_A ....
Probab=99.81 E-value=4.6e-20 Score=130.68 Aligned_cols=57 Identities=42% Similarity=0.767 Sum_probs=53.0
Q ss_pred ccccCCCCCceeeeEEeCCCCEEEEEEEecCCceEEEeecCccccccCceEEEEeec
Q psy9698 32 RLRTTQPRPIVKDTVGNLPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVFQVGD 88 (123)
Q Consensus 32 ~~~~n~~~p~~rDTv~v~pg~~~~irf~adnpG~Wl~HCHi~~H~~~GM~~~~~V~~ 88 (123)
...+++.+|.+|||+.|+++++++|||.++|||.|++|||+++|++.||++.|.|.+
T Consensus 80 ~~~~~~~~~~~~DTv~v~~~~~~~i~~~~~~~G~w~~HCHi~~H~~~GM~~~~~v~~ 136 (138)
T PF07731_consen 80 TQSYNPENPGWRDTVLVPPGGWVVIRFRADNPGPWLFHCHILEHEDNGMMAVFVVGP 136 (138)
T ss_dssp GGCCCSSSSSEESEEEEETTEEEEEEEEETSTEEEEEEESSHHHHHTT-EEEEEECH
T ss_pred ccccccccCcccccccccceeEEEEEEEeecceEEEEEEchHHHHhCCCeEEEEEcC
Confidence 446889999999999999999999999999999999999999999999999999974
No 13
>TIGR03390 ascorbOXfungal L-ascorbate oxidase, fungal type. This model describes a family of fungal ascorbate oxidases, within a larger family of multicopper oxidases that also includes plant ascorbate oxidases (TIGR03388), plant laccases and laccase-like proteins (TIGR03389), and related proteins. The member from Acremonium sp. HI-25 is characterized.
Probab=99.79 E-value=8.7e-20 Score=156.25 Aligned_cols=75 Identities=28% Similarity=0.595 Sum_probs=62.7
Q ss_pred CEEEeecCCCCCCCcccccHHHHHHhccCCCccccCCCCCceeeeEEeC----------CCCEEEEEEEecCCceEEEee
Q psy9698 1 MYILKQGKIPPNVDKGLFLSQLIRQLDQEGPRLRTTQPRPIVKDTVGNL----------PSGYTVVRVHFNNPGMWYFHC 70 (123)
Q Consensus 1 f~vlg~g~~~~~~~~~~~~~~e~~~~~~~g~~~~~n~~~p~~rDTv~v~----------pg~~~~irf~adnpG~Wl~HC 70 (123)
|||||+|. +.|.. +.++ ..+|+.||++|||+.|+ |++|++|||++||||.|+|||
T Consensus 451 F~vlg~G~-G~~~~----~~~~----------~~~nl~nP~rRDTv~vp~~~~~~~~~~~~~~~~ir~~~dNPG~W~~HC 515 (538)
T TIGR03390 451 FYDIGGGD-GEYNA----TANE----------AKLENYTPVLRDTTMLYRYAVKVVPGAPAGWRAWRIRVTNPGVWMMHC 515 (538)
T ss_pred EEEEcccc-cccCC----ccCh----------hhhccCCCCeecceeeccccccccccCCCceEEEEEEcCCCeeEEEec
Confidence 89999997 34431 1111 14688999999999996 899999999999999999999
Q ss_pred cCccccccCceEEEEeeccC
Q psy9698 71 HFVMHTDTGMTLVFQVGDRK 90 (123)
Q Consensus 71 Hi~~H~~~GM~~~~~V~~~~ 90 (123)
||.+|+..||+++|.|.+.+
T Consensus 516 Hi~~H~~~Gm~~~~~~~~~~ 535 (538)
T TIGR03390 516 HILQHMVMGMQTVWVFGDAE 535 (538)
T ss_pred cchhhhhccceEEEEeCChH
Confidence 99999999999999997543
No 14
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=99.30 E-value=2.1e-12 Score=112.09 Aligned_cols=47 Identities=34% Similarity=0.646 Sum_probs=45.4
Q ss_pred CceeeeEEeCCCCEEEEEEEecCCceEEEeecCccccccCceEEEEe
Q psy9698 40 PIVKDTVGNLPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVFQV 86 (123)
Q Consensus 40 p~~rDTv~v~pg~~~~irf~adnpG~Wl~HCHi~~H~~~GM~~~~~V 86 (123)
++++||+.|+||++.+++|.++|||.|+||||++.|++.||++.|.|
T Consensus 540 ~~~~dTv~V~Pg~t~~~~f~ad~pG~w~~HCH~l~H~~~GM~~~~~v 586 (587)
T TIGR01480 540 QVRKHTVDVPPGGKRSFRVTADALGRWAYHCHMLLHMEAGMFREVTV 586 (587)
T ss_pred cccCCceeeCCCCEEEEEEECCCCeEEEEcCCCHHHHhCcCcEEEEe
Confidence 57889999999999999999999999999999999999999999987
No 15
>PRK10883 FtsI repressor; Provisional
Probab=99.28 E-value=3.4e-12 Score=108.14 Aligned_cols=45 Identities=27% Similarity=0.209 Sum_probs=41.4
Q ss_pred ceeeeEEeCCCCEEEEEEEecCCc----eEEEeecCccccccCceEEEEee
Q psy9698 41 IVKDTVGNLPSGYTVVRVHFNNPG----MWYFHCHFVMHTDTGMTLVFQVG 87 (123)
Q Consensus 41 ~~rDTv~v~pg~~~~irf~adnpG----~Wl~HCHi~~H~~~GM~~~~~V~ 87 (123)
.|||||.|+ +.++|+++++++| .|||||||++|++.|||+.|.|.
T Consensus 420 gwkDTV~v~--~~v~i~~~f~~~~~~~~~~m~HCHiLeHeD~GMM~~~~V~ 468 (471)
T PRK10883 420 GWKDTVWVD--GQVELLVYFGQPSWAHFPFLFYSQTLEMADRGSIGQLLVN 468 (471)
T ss_pred CcCcEEEcC--CeEEEEEEecCCCCCCCcEEeecccccccccCCccCeEEe
Confidence 689999995 4699999999887 89999999999999999999995
No 16
>PRK10965 multicopper oxidase; Provisional
Probab=99.26 E-value=6.6e-12 Score=107.71 Aligned_cols=46 Identities=41% Similarity=0.564 Sum_probs=39.9
Q ss_pred CceeeeEEeCCCCEEEEEEEec----CCceEEEeecCccccccCceEEEEe
Q psy9698 40 PIVKDTVGNLPSGYTVVRVHFN----NPGMWYFHCHFVMHTDTGMTLVFQV 86 (123)
Q Consensus 40 p~~rDTv~v~pg~~~~irf~ad----npG~Wl~HCHi~~H~~~GM~~~~~V 86 (123)
+.|||||.|+| +.++|+++++ ++|.|+||||+++|++.|||+.|.|
T Consensus 473 ~~wkDTv~v~~-~~~~i~~~f~~~~~~~g~~~~HCHiL~Hed~GMM~~~~V 522 (523)
T PRK10965 473 AGWKDTVRVEG-GRSEVLVKFDHDAPKEHAYMAHCHLLEHEDTGMMLGFTV 522 (523)
T ss_pred cccccEEEECC-cEEEEEEEecCCCCCCCCEEEEeCchhhhccCccceeEe
Confidence 46899999988 6677776664 5779999999999999999999987
No 17
>COG2132 SufI Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.24 E-value=8.8e-12 Score=104.48 Aligned_cols=50 Identities=42% Similarity=0.653 Sum_probs=47.5
Q ss_pred CCCceeeeEEeCCCCEEEEEEEecCCceEEEeecCccccccCceEEEEee
Q psy9698 38 PRPIVKDTVGNLPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVFQVG 87 (123)
Q Consensus 38 ~~p~~rDTv~v~pg~~~~irf~adnpG~Wl~HCHi~~H~~~GM~~~~~V~ 87 (123)
..+.||||+.+.|++..+++|.+++||.|+||||+++|++.||+..+.|.
T Consensus 400 ~~~~~kDTv~v~~~~~~~v~~~a~~~g~~~~HCH~l~H~~~Gm~~~~~v~ 449 (451)
T COG2132 400 AAPGWKDTVLVAPGERLLVRFDADYPGPWMFHCHILEHEDNGMMGQFGVV 449 (451)
T ss_pred ccCccceEEEeCCCeEEEEEEeCCCCCceEEeccchhHhhcCCeeEEEec
Confidence 45789999999999999999999999999999999999999999999885
No 18
>TIGR02376 Cu_nitrite_red nitrite reductase, copper-containing. This family consists of copper-type nitrite reductase. It reduces nitrite to nitric oxide, the first step in denitrification.
Probab=98.63 E-value=5.1e-08 Score=78.90 Aligned_cols=55 Identities=20% Similarity=0.345 Sum_probs=45.0
Q ss_pred eEEeCCCCEEEEEEEecCCceEEEeec----CccccccCceEEEEeeccCccCCCCCCC
Q psy9698 45 TVGNLPSGYTVVRVHFNNPGMWYFHCH----FVMHTDTGMTLVFQVGDRKQFVRAPPHF 99 (123)
Q Consensus 45 Tv~v~pg~~~~irf~adnpG~Wl~HCH----i~~H~~~GM~~~~~V~~~~~~~~~p~~~ 99 (123)
+..|+||++.+++|.+++||.|+|||| +..|...||++.|.|.+.+..++...++
T Consensus 99 ~~~I~PG~t~ty~F~~~~~Gty~YH~H~~~~~~~q~~~Gl~G~liV~~~~~~~~~d~e~ 157 (311)
T TIGR02376 99 LTQVNPGETATLRFKATRPGAFVYHCAPPGMVPWHVVSGMNGAIMVLPREGLPEYDKEY 157 (311)
T ss_pred ceeECCCCeEEEEEEcCCCEEEEEEcCCCCchhHHhhcCcceEEEeeccCCCcCcceeE
Confidence 456999999999999999999999999 4679999999999998654444433333
No 19
>PLN02604 oxidoreductase
Probab=98.03 E-value=6.5e-06 Score=71.47 Aligned_cols=45 Identities=20% Similarity=0.386 Sum_probs=41.7
Q ss_pred eEEeCCCCEEEEEEEecCCceEEEeecCccccccCceEEEEeecc
Q psy9698 45 TVGNLPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVFQVGDR 89 (123)
Q Consensus 45 Tv~v~pg~~~~irf~adnpG~Wl~HCHi~~H~~~GM~~~~~V~~~ 89 (123)
...|+||+..+++|.++++|.|.||||...|...||.+.|.|.+.
T Consensus 101 q~~i~pg~s~~y~f~~~~~Gt~wyH~H~~~q~~~Gl~G~liV~~~ 145 (566)
T PLN02604 101 QCPILPGETFTYEFVVDRPGTYLYHAHYGMQREAGLYGSIRVSLP 145 (566)
T ss_pred cCccCCCCeEEEEEEcCCCEEEEEeeCcHHHHhCCCeEEEEEEec
Confidence 447899999999999999999999999999999999999999754
No 20
>PF07732 Cu-oxidase_3: Multicopper oxidase; InterPro: IPR011707 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 3 (or coupled binuclear) domains. ; GO: 0005507 copper ion binding; PDB: 2QT6_B 3KW7_B 2R7E_A 3CDZ_A 1SDD_A 3G5W_D 3UAC_A 2YXV_A 3OD3_A 3NSY_A ....
Probab=97.94 E-value=2.1e-05 Score=55.33 Aligned_cols=43 Identities=16% Similarity=0.211 Sum_probs=39.0
Q ss_pred EEeCCCCEEEEEEEecC-CceEEEeecCccccccCceEEEEeec
Q psy9698 46 VGNLPSGYTVVRVHFNN-PGMWYFHCHFVMHTDTGMTLVFQVGD 88 (123)
Q Consensus 46 v~v~pg~~~~irf~adn-pG~Wl~HCHi~~H~~~GM~~~~~V~~ 88 (123)
-.|.||+..+.+|.++. +|.+.||||...|...||.+.|.|.+
T Consensus 72 ~~i~pG~~~~Y~~~~~~~~Gt~wYH~H~~~~~~~GL~G~~iV~~ 115 (117)
T PF07732_consen 72 CPIAPGESFTYEFTANQQAGTYWYHSHVHGQQVMGLYGAIIVEP 115 (117)
T ss_dssp SSBSTTEEEEEEEEESSCSEEEEEEECSTTHHHTTEEEEEEEE-
T ss_pred eeEEeecceeeeEeeeccccceeEeeCCCchhcCcCEEEEEEcC
Confidence 35889999999999998 99999999999987899999999974
No 21
>TIGR03388 ascorbase L-ascorbate oxidase, plant type. Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases.
Probab=97.48 E-value=0.00019 Score=62.04 Aligned_cols=44 Identities=18% Similarity=0.371 Sum_probs=40.9
Q ss_pred EEeCCCCEEEEEEEecCCceEEEeecCccccccCceEEEEeecc
Q psy9698 46 VGNLPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVFQVGDR 89 (123)
Q Consensus 46 v~v~pg~~~~irf~adnpG~Wl~HCHi~~H~~~GM~~~~~V~~~ 89 (123)
..|+||+..+.+|.++.+|.|.||||...|...||.+.|.|.+.
T Consensus 79 ~~I~PG~s~~y~f~~~~~Gt~wyH~H~~~q~~~Gl~G~liV~~~ 122 (541)
T TIGR03388 79 CAINPGETFIYNFVVDRPGTYFYHGHYGMQRSAGLYGSLIVDVP 122 (541)
T ss_pred CCcCCCCEEEEEEEcCCCEEEEEEecchHHhhccceEEEEEecC
Confidence 46899999999999999999999999999999999999999754
No 22
>TIGR02376 Cu_nitrite_red nitrite reductase, copper-containing. This family consists of copper-type nitrite reductase. It reduces nitrite to nitric oxide, the first step in denitrification.
Probab=97.37 E-value=0.00038 Score=56.38 Aligned_cols=45 Identities=16% Similarity=0.224 Sum_probs=42.1
Q ss_pred eeeEEeCCCCEEEEEEEecCCceEEEeecCcccc-ccCceEEEEee
Q psy9698 43 KDTVGNLPSGYTVVRVHFNNPGMWYFHCHFVMHT-DTGMTLVFQVG 87 (123)
Q Consensus 43 rDTv~v~pg~~~~irf~adnpG~Wl~HCHi~~H~-~~GM~~~~~V~ 87 (123)
.|++.|.||+.+.|.++++.||.|.+|||...|. ..|+.+++.|.
T Consensus 251 ~~~~~i~PG~R~dv~v~~~~pG~y~~~~~~~~~~~~~g~~~~i~~~ 296 (311)
T TIGR02376 251 VETWFIPGGSAAAALYTFEQPGVYAYVDHNLIEAFEKGAAAQVKVE 296 (311)
T ss_pred cceEEECCCceEEEEEEeCCCeEEEEECcHHHHHHhCCCEEEEEEC
Confidence 7999999999999999999999999999999887 77999999885
No 23
>TIGR03095 rusti_cyanin rusticyanin. Rusticyanin is a blue copper protein, described in an obligate acidophilic chemolithoautroph, Acidithiobacillus ferrooxidans, as an electron transfer protein. It can constitute up to 5 percent of protein in cells grown on Fe(II) and is thought to be part of an electron chain for Fe(II) oxidation, with two c-type cytochromes, an aa3-type cytochrome oxidase, and 02 as terminal electron acceptor. It is rather closely related to sulfocyanin (TIGR03094).
Probab=97.27 E-value=0.00039 Score=50.97 Aligned_cols=34 Identities=29% Similarity=0.637 Sum_probs=31.3
Q ss_pred EEEEEEEecCCceEEEeecCccccccCceEEEEe
Q psy9698 53 YTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVFQV 86 (123)
Q Consensus 53 ~~~irf~adnpG~Wl~HCHi~~H~~~GM~~~~~V 86 (123)
+..+.|.++.||.+.||||+..|...||.+.+.|
T Consensus 114 ~~~~tf~f~~aGtywyhC~~pgH~~~GM~G~iiV 147 (148)
T TIGR03095 114 YTDFTYHFSTAGTYWYLCTYPGHAENGMYGKIVV 147 (148)
T ss_pred eeEEEEECCCCeEEEEEcCChhHHHCCCEEEEEE
Confidence 4688888899999999999999999999999987
No 24
>TIGR02656 cyanin_plasto plastocyanin. Members of this family are plastocyanin, a blue copper protein related to pseudoazurin, halocyanin, amicyanin, etc. This protein, located in the thylakoid luman, performs electron transport to photosystem I in Cyanobacteria and chloroplasts.
Probab=97.24 E-value=0.00057 Score=46.41 Aligned_cols=40 Identities=28% Similarity=0.393 Sum_probs=35.1
Q ss_pred eeEEeCCCCEEEEEEEecCCceEEEeecCccccccCceEEEEee
Q psy9698 44 DTVGNLPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVFQVG 87 (123)
Q Consensus 44 DTv~v~pg~~~~irf~adnpG~Wl~HCHi~~H~~~GM~~~~~V~ 87 (123)
+++.+.||+...+.|.. ||.+.|+|. .|..+||.+.+.|.
T Consensus 60 ~~~~~~pG~t~~~tF~~--~G~y~y~C~--~H~~aGM~G~I~V~ 99 (99)
T TIGR02656 60 KDLLNSPGESYEVTFST--PGTYTFYCE--PHRGAGMVGKITVE 99 (99)
T ss_pred cccccCCCCEEEEEeCC--CEEEEEEcC--CccccCCEEEEEEC
Confidence 56778899999887775 999999998 89999999999873
No 25
>PF00127 Copper-bind: Copper binding proteins, plastocyanin/azurin family; InterPro: IPR000923 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. This pollen protein is evolutionary related to the above proteins, but seems to have lost the ability to bind copper. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1UAT_A 1CUO_A 1PLC_A 4PCY_A 3PCY_A 1PND_A 1PNC_A 1JXG_A 6PCY_A 1TKW_A ....
Probab=96.82 E-value=0.0055 Score=41.40 Aligned_cols=40 Identities=23% Similarity=0.341 Sum_probs=35.2
Q ss_pred eeEEeCCCCEEEEEEEecCCceEEEeecCccccccCceEEEEee
Q psy9698 44 DTVGNLPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVFQVG 87 (123)
Q Consensus 44 DTv~v~pg~~~~irf~adnpG~Wl~HCHi~~H~~~GM~~~~~V~ 87 (123)
.+..+.||+...+.|. .||.+.|+|- - |...||.+.+.|.
T Consensus 60 ~~~~~~~G~~~~~tF~--~~G~y~y~C~-P-H~~~GM~G~i~V~ 99 (99)
T PF00127_consen 60 SSPLLAPGETYSVTFT--KPGTYEYYCT-P-HYEAGMVGTIIVE 99 (99)
T ss_dssp EEEEBSTTEEEEEEEE--SSEEEEEEET-T-TGGTTSEEEEEEE
T ss_pred cceecCCCCEEEEEeC--CCeEEEEEcC-C-CcccCCEEEEEEC
Confidence 5677889999888877 9999999999 4 9999999999873
No 26
>PLN02191 L-ascorbate oxidase
Probab=96.66 E-value=0.0029 Score=55.30 Aligned_cols=43 Identities=19% Similarity=0.350 Sum_probs=40.1
Q ss_pred EEeCCCCEEEEEEEecCCceEEEeecCccccccCceEEEEeec
Q psy9698 46 VGNLPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVFQVGD 88 (123)
Q Consensus 46 v~v~pg~~~~irf~adnpG~Wl~HCHi~~H~~~GM~~~~~V~~ 88 (123)
..|+||+..+.+|.++.+|.+.||||...+...||.+.+.|.+
T Consensus 101 ~pI~PG~s~~Y~f~~~~~GT~wYHsH~~~q~~~Gl~G~liV~~ 143 (574)
T PLN02191 101 CAINPGETFTYKFTVEKPGTHFYHGHYGMQRSAGLYGSLIVDV 143 (574)
T ss_pred CCcCCCCeEEEEEECCCCeEEEEeeCcHHHHhCCCEEEEEEcc
Confidence 4689999999999999999999999999999999999999963
No 27
>COG4454 Uncharacterized copper-binding protein [Inorganic ion transport and metabolism]
Probab=96.34 E-value=0.012 Score=43.88 Aligned_cols=46 Identities=26% Similarity=0.354 Sum_probs=43.3
Q ss_pred eeeeEEeCCCCEEEEEEEecCCceEEEeecCccccccCceEEEEee
Q psy9698 42 VKDTVGNLPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVFQVG 87 (123)
Q Consensus 42 ~rDTv~v~pg~~~~irf~adnpG~Wl~HCHi~~H~~~GM~~~~~V~ 87 (123)
-..++.+.||....+-+.+.+||.+-+-|-+..|.+.||.+.|.|.
T Consensus 112 ~~~~v~L~PG~s~elvv~ft~~g~ye~~C~iPGHy~AGM~g~itV~ 157 (158)
T COG4454 112 DPNTVTLAPGKSGELVVVFTGAGKYEFACNIPGHYEAGMVGEITVS 157 (158)
T ss_pred CcceeEeCCCCcEEEEEEecCCccEEEEecCCCcccCCcEEEEEeC
Confidence 4578999999999999999999999999999999999999999885
No 28
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=96.14 E-value=0.009 Score=52.52 Aligned_cols=43 Identities=16% Similarity=0.337 Sum_probs=39.7
Q ss_pred EEeCCCCEEEEEEEecCCceEEEeecCccccccCceEEEEeec
Q psy9698 46 VGNLPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVFQVGD 88 (123)
Q Consensus 46 v~v~pg~~~~irf~adnpG~Wl~HCHi~~H~~~GM~~~~~V~~ 88 (123)
-.|+||+..+.+|.+..+|.+.||||...+...||.+.|.|.+
T Consensus 120 ~~I~PG~s~~Y~f~~~~~GTyWYHsH~~~q~~~GL~G~lIV~~ 162 (587)
T TIGR01480 120 AGIAPGETFTYRFPVRQSGTYWYHSHSGFQEQAGLYGPLIIDP 162 (587)
T ss_pred cccCCCCeEEEEEECCCCeeEEEecCchhHhhccceEEEEECC
Confidence 3688999999999999999999999999899999999999974
No 29
>PLN02168 copper ion binding / pectinesterase
Probab=95.49 E-value=0.024 Score=49.49 Aligned_cols=44 Identities=11% Similarity=0.237 Sum_probs=40.2
Q ss_pred EEeCCCCEEEEEEEe-cCCceEEEeecCccccccCceEEEEeecc
Q psy9698 46 VGNLPSGYTVVRVHF-NNPGMWYFHCHFVMHTDTGMTLVFQVGDR 89 (123)
Q Consensus 46 v~v~pg~~~~irf~a-dnpG~Wl~HCHi~~H~~~GM~~~~~V~~~ 89 (123)
..|+||++.+.+|.+ +.+|.+.||+|...+...||.+.+.|.+.
T Consensus 102 cpI~PG~sftY~F~~~~q~GT~WYHsH~~~Q~~~GL~G~lII~~~ 146 (545)
T PLN02168 102 CPILPGTNWTYRFQVKDQIGSYFYFPSLLLQKAAGGYGAIRIYNP 146 (545)
T ss_pred CCCCCCCcEEEEEEeCCCCceEEEecChhhhhhCcceeEEEEcCC
Confidence 469999999999999 58999999999999999999999999754
No 30
>TIGR03389 laccase laccase, plant. Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2), often several from a single plant species, and additional, uncharacterized, closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity, and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate.
Probab=95.45 E-value=0.027 Score=48.77 Aligned_cols=43 Identities=12% Similarity=0.149 Sum_probs=36.9
Q ss_pred EEeCCCCEEEEEEEe-cCCceEEEeecCccccccCceEEEEeecc
Q psy9698 46 VGNLPSGYTVVRVHF-NNPGMWYFHCHFVMHTDTGMTLVFQVGDR 89 (123)
Q Consensus 46 v~v~pg~~~~irf~a-dnpG~Wl~HCHi~~H~~~GM~~~~~V~~~ 89 (123)
..|+||+..+.+|.+ +.+|.+.||||.. +...||.+.+.|.+.
T Consensus 80 ~pI~PG~s~~Y~f~~~~~~GT~WYHsH~~-~~~~Gl~G~lIV~~~ 123 (539)
T TIGR03389 80 CPIQPGQSYVYNFTITGQRGTLWWHAHIS-WLRATVYGAIVILPK 123 (539)
T ss_pred CCcCCCCeEEEEEEecCCCeeEEEecCch-hhhccceEEEEEcCC
Confidence 368899999999998 5899999999985 456799999999753
No 31
>PLN02354 copper ion binding / oxidoreductase
Probab=95.38 E-value=0.025 Score=49.42 Aligned_cols=45 Identities=16% Similarity=0.143 Sum_probs=40.6
Q ss_pred eEEeCCCCEEEEEEEe-cCCceEEEeecCccccccCceEEEEeecc
Q psy9698 45 TVGNLPSGYTVVRVHF-NNPGMWYFHCHFVMHTDTGMTLVFQVGDR 89 (123)
Q Consensus 45 Tv~v~pg~~~~irf~a-dnpG~Wl~HCHi~~H~~~GM~~~~~V~~~ 89 (123)
...|+||++.+.+|.+ +.+|.+-||+|...+...||.+.+.|.+.
T Consensus 102 QcpI~PG~sf~Y~F~~~~q~GT~WYHsH~~~Q~~~Gl~G~lII~~~ 147 (552)
T PLN02354 102 NCPIPPGTNFTYHFQPKDQIGSYFYYPSTGMHRAAGGFGGLRVNSR 147 (552)
T ss_pred cCCCCCCCcEEEEEEeCCCCcceEEecCccceecCCccceEEEcCC
Confidence 4569999999999998 57999999999999999999999999754
No 32
>PLN02835 oxidoreductase
Probab=95.32 E-value=0.032 Score=48.51 Aligned_cols=43 Identities=12% Similarity=0.136 Sum_probs=39.0
Q ss_pred EEeCCCCEEEEEEEe-cCCceEEEeecCccccccCceEEEEeec
Q psy9698 46 VGNLPSGYTVVRVHF-NNPGMWYFHCHFVMHTDTGMTLVFQVGD 88 (123)
Q Consensus 46 v~v~pg~~~~irf~a-dnpG~Wl~HCHi~~H~~~GM~~~~~V~~ 88 (123)
..|+||++.+.+|.+ +.+|.+.||||...+...||.+.+.|.+
T Consensus 105 ~pI~PG~sf~Y~F~~~~q~GT~WYHsH~~~q~~~Gl~G~lIV~~ 148 (539)
T PLN02835 105 CPIPPNSNYTYKFQTKDQIGTFTYFPSTLFHKAAGGFGAINVYE 148 (539)
T ss_pred CCCCCCCcEEEEEEECCCCEeEEEEeCccchhcCcccceeEEeC
Confidence 458999999999986 6799999999999999999999999963
No 33
>KOG1263|consensus
Probab=95.32 E-value=0.039 Score=48.45 Aligned_cols=49 Identities=16% Similarity=0.245 Sum_probs=42.8
Q ss_pred eEEeCCCCEEEEEEEec-CCceEEEeecCccccccCceEEEEeeccCccC
Q psy9698 45 TVGNLPSGYTVVRVHFN-NPGMWYFHCHFVMHTDTGMTLVFQVGDRKQFV 93 (123)
Q Consensus 45 Tv~v~pg~~~~irf~ad-npG~Wl~HCHi~~H~~~GM~~~~~V~~~~~~~ 93 (123)
.-.|+||+..+-+|..+ ..|.+.||.|..+|.+.|+.+.|.|.+...++
T Consensus 103 qCPI~Pg~~~tY~F~v~~q~GT~~yh~h~~~~Ra~G~~G~liI~~~~~~p 152 (563)
T KOG1263|consen 103 QCPIQPGENFTYRFTVKDQIGTLWYHSHVSWQRATGVFGALIINPRPGLP 152 (563)
T ss_pred cCCcCCCCeEEEEEEeCCcceeEEEeeccccccccCceeEEEEcCCccCC
Confidence 34788999999999997 89999999999999999999999997554333
No 34
>PLN00044 multi-copper oxidase-related protein; Provisional
Probab=94.87 E-value=0.046 Score=48.28 Aligned_cols=45 Identities=9% Similarity=0.155 Sum_probs=41.3
Q ss_pred eEEeCCCCEEEEEEEe-cCCceEEEeecCccccccCceEEEEeecc
Q psy9698 45 TVGNLPSGYTVVRVHF-NNPGMWYFHCHFVMHTDTGMTLVFQVGDR 89 (123)
Q Consensus 45 Tv~v~pg~~~~irf~a-dnpG~Wl~HCHi~~H~~~GM~~~~~V~~~ 89 (123)
...|+||+..+.+|.+ +.+|.+-||+|...+...||.+.|.|.+.
T Consensus 104 QcPI~PG~sftY~F~~~dq~GT~WYHsH~~~Q~~~Gl~GalII~~~ 149 (596)
T PLN00044 104 NCAIPAGWNWTYQFQVKDQVGSFFYAPSTALHRAAGGYGAITINNR 149 (596)
T ss_pred cCCcCCCCcEEEEEEeCCCCceeEeeccchhhhhCcCeeEEEEcCc
Confidence 5678999999999999 58999999999999999999999999754
No 35
>PRK02710 plastocyanin; Provisional
Probab=94.78 E-value=0.062 Score=37.61 Aligned_cols=37 Identities=19% Similarity=0.257 Sum_probs=31.4
Q ss_pred EEeCCCCEEEEEEEecCCceEEEeecCccccccCceEEEEe
Q psy9698 46 VGNLPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVFQV 86 (123)
Q Consensus 46 v~v~pg~~~~irf~adnpG~Wl~HCHi~~H~~~GM~~~~~V 86 (123)
..+.||+..++.|.. ||.+.|+|- .|...||.+.+.|
T Consensus 82 ~~~~pg~t~~~tF~~--~G~y~y~C~--~H~~~gM~G~I~V 118 (119)
T PRK02710 82 LAFAPGESWEETFSE--AGTYTYYCE--PHRGAGMVGKITV 118 (119)
T ss_pred cccCCCCEEEEEecC--CEEEEEEcC--CCccCCcEEEEEE
Confidence 346788888877775 999999997 8999999999987
No 36
>PLN02792 oxidoreductase
Probab=94.58 E-value=0.052 Score=47.26 Aligned_cols=44 Identities=9% Similarity=0.159 Sum_probs=39.0
Q ss_pred eEEeCCCCEEEEEEEe-cCCceEEEeecCccccccCceEEEEeec
Q psy9698 45 TVGNLPSGYTVVRVHF-NNPGMWYFHCHFVMHTDTGMTLVFQVGD 88 (123)
Q Consensus 45 Tv~v~pg~~~~irf~a-dnpG~Wl~HCHi~~H~~~GM~~~~~V~~ 88 (123)
+..|+||+..+.+|.+ +.+|.+.||||...+...||.+.+.|.+
T Consensus 91 qcPI~PG~sftY~F~~~~q~GT~WYHsH~~~q~~~Gl~G~liI~~ 135 (536)
T PLN02792 91 TCPIPPGKNYTYDFQVKDQVGSYFYFPSLAVQKAAGGYGSLRIYS 135 (536)
T ss_pred cCccCCCCcEEEEEEeCCCccceEEecCcchhhhcccccceEEeC
Confidence 4568999999999998 5799999999999999999999887753
No 37
>TIGR02375 pseudoazurin pseudoazurin. Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.
Probab=94.45 E-value=0.087 Score=37.20 Aligned_cols=32 Identities=31% Similarity=0.544 Sum_probs=27.9
Q ss_pred EEEEEecCCceEEEeecCccccccCceEEEEeec
Q psy9698 55 VVRVHFNNPGMWYFHCHFVMHTDTGMTLVFQVGD 88 (123)
Q Consensus 55 ~irf~adnpG~Wl~HCHi~~H~~~GM~~~~~V~~ 88 (123)
.+.+.++.||.+-|+|- .|...||.+.+.|++
T Consensus 57 ~~~~tF~~~G~Y~Y~C~--pH~~~GM~G~V~Vg~ 88 (116)
T TIGR02375 57 EYTVTVTEEGVYGVKCT--PHYGMGMVALIQVGD 88 (116)
T ss_pred EEEEEeCCCEEEEEEcC--CCccCCCEEEEEECC
Confidence 35555579999999999 999999999999985
No 38
>PF00394 Cu-oxidase: Multicopper oxidase; InterPro: IPR001117 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 1 (blue) domains. These domains are also present in proteins that have lost the ability to bind copper.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1RZP_A 2AVF_D 1NIA_A 1KCB_A 2NRD_A 1NIB_A 2BW4_A 1RZQ_C 2BWD_A 2BWI_A ....
Probab=94.32 E-value=0.12 Score=37.48 Aligned_cols=48 Identities=21% Similarity=0.279 Sum_probs=39.9
Q ss_pred CCceeeeEEeCCCCEEEEEEEecC-CceEEEee----cCccccccCceEEEEe
Q psy9698 39 RPIVKDTVGNLPSGYTVVRVHFNN-PGMWYFHC----HFVMHTDTGMTLVFQV 86 (123)
Q Consensus 39 ~p~~rDTv~v~pg~~~~irf~adn-pG~Wl~HC----Hi~~H~~~GM~~~~~V 86 (123)
.|...|++.|.||+.+.+.++++. +|.|.+++ +...+...|+...+++
T Consensus 103 ~p~~~~~l~l~~G~R~dvlv~~~~~~g~y~i~~~~~~~~~~~~~~~~~~aiL~ 155 (159)
T PF00394_consen 103 EPYKVDTLVLAPGQRYDVLVTADQPPGNYWIRASYQHDSINDPQNGNALAILR 155 (159)
T ss_dssp EEEEESBEEE-TTEEEEEEEEECSCSSEEEEEEEESSSSSHSHGGGTTEEEEE
T ss_pred cccccceEEeeCCeEEEEEEEeCCCCCeEEEEEecccCCCccCCCcEEEEEEE
Confidence 488999999999999999999998 99999999 4556677788766654
No 39
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=94.21 E-value=0.099 Score=35.30 Aligned_cols=30 Identities=20% Similarity=0.231 Sum_probs=21.4
Q ss_pred EEeCCCCEEEEEEEecCCceEEEeecCccc
Q psy9698 46 VGNLPSGYTVVRVHFNNPGMWYFHCHFVMH 75 (123)
Q Consensus 46 v~v~pg~~~~irf~adnpG~Wl~HCHi~~H 75 (123)
..+.||+..++.|.++.||.+-|+|-+..+
T Consensus 68 ~~l~~g~~~~~~f~~~~~G~y~~~C~~~~~ 97 (104)
T PF13473_consen 68 KVLPPGETATVTFTPLKPGEYEFYCTMHPN 97 (104)
T ss_dssp EEE-TT-EEEEEEEE-S-EEEEEB-SSS-T
T ss_pred EEECCCCEEEEEEcCCCCEEEEEEcCCCCc
Confidence 677899999999999999999999996554
No 40
>PRK10965 multicopper oxidase; Provisional
Probab=94.07 E-value=0.092 Score=45.58 Aligned_cols=44 Identities=18% Similarity=0.237 Sum_probs=38.5
Q ss_pred EEeCCCCEEEEEEEecC-CceEEEeecC----ccccccCceEEEEeecc
Q psy9698 46 VGNLPSGYTVVRVHFNN-PGMWYFHCHF----VMHTDTGMTLVFQVGDR 89 (123)
Q Consensus 46 v~v~pg~~~~irf~adn-pG~Wl~HCHi----~~H~~~GM~~~~~V~~~ 89 (123)
..|+||+..+.+|.++. +|.+-||||. ..+...||.+.+.|.+.
T Consensus 118 ~~I~PG~s~~Y~f~~~q~aGT~WYH~H~~g~t~~Qv~~GL~G~lIV~d~ 166 (523)
T PRK10965 118 GIIAPGGKRTVTFTVDQPAATCWFHPHQHGKTGRQVAMGLAGLVLIEDD 166 (523)
T ss_pred CCCCCCCEEEEEeccCCCCceEEEecCCCCCcHHHHhCcCeEEEEEcCc
Confidence 46889999999999986 6999999996 56788999999999754
No 41
>PRK02888 nitrous-oxide reductase; Validated
Probab=93.93 E-value=0.14 Score=45.63 Aligned_cols=44 Identities=18% Similarity=0.391 Sum_probs=37.0
Q ss_pred eeEEeCCCCEEEEEEEecCCceEEEeecCcccc-ccCceEEEEee
Q psy9698 44 DTVGNLPSGYTVVRVHFNNPGMWYFHCHFVMHT-DTGMTLVFQVG 87 (123)
Q Consensus 44 DTv~v~pg~~~~irf~adnpG~Wl~HCHi~~H~-~~GM~~~~~V~ 87 (123)
--+.+.||....+.|.++.||.|.++|....|. ..+|.+.+.|.
T Consensus 589 I~~dv~PG~t~svtF~adkPGvy~~~CtefCGa~H~~M~G~~iVe 633 (635)
T PRK02888 589 VNMEVAPQATASVTFTADKPGVYWYYCTWFCHALHMEMRGRMLVE 633 (635)
T ss_pred ccEEEcCCceEEEEEEcCCCEEEEEECCcccccCcccceEEEEEE
Confidence 346777999999999999999999999985553 35899998886
No 42
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=93.91 E-value=0.09 Score=38.29 Aligned_cols=29 Identities=7% Similarity=0.170 Sum_probs=25.9
Q ss_pred eEEeCCCCEEEEEEEecCCceEEEeecCc
Q psy9698 45 TVGNLPSGYTVVRVHFNNPGMWYFHCHFV 73 (123)
Q Consensus 45 Tv~v~pg~~~~irf~adnpG~Wl~HCHi~ 73 (123)
...|+||+..+++|.++.||.+.|||.+-
T Consensus 93 s~~I~pGet~TitF~adKpG~Y~y~C~~H 121 (135)
T TIGR03096 93 SEVIKAGETKTISFKADKAGAFTIWCQLH 121 (135)
T ss_pred ceEECCCCeEEEEEECCCCEEEEEeCCCC
Confidence 45688999999999999999999999753
No 43
>PLN02991 oxidoreductase
Probab=93.56 E-value=0.13 Score=44.99 Aligned_cols=45 Identities=16% Similarity=0.253 Sum_probs=39.9
Q ss_pred eEEeCCCCEEEEEEEe-cCCceEEEeecCccccccCceEEEEeecc
Q psy9698 45 TVGNLPSGYTVVRVHF-NNPGMWYFHCHFVMHTDTGMTLVFQVGDR 89 (123)
Q Consensus 45 Tv~v~pg~~~~irf~a-dnpG~Wl~HCHi~~H~~~GM~~~~~V~~~ 89 (123)
...|+||+..+.+|.+ +.+|.+-||+|...+...|+.+.+.|.+.
T Consensus 103 QcpI~PG~sftY~F~~~~q~GT~WYHsH~~~q~~~Gl~G~lIV~~~ 148 (543)
T PLN02991 103 TCPIPPGKNYTYALQVKDQIGSFYYFPSLGFHKAAGGFGAIRISSR 148 (543)
T ss_pred CCccCCCCcEEEEEEeCCCCcceEEecCcchhhhCCCeeeEEEeCC
Confidence 3568999999999999 58999999999988888999999999753
No 44
>PRK10883 FtsI repressor; Provisional
Probab=93.52 E-value=0.17 Score=43.34 Aligned_cols=43 Identities=14% Similarity=0.191 Sum_probs=36.1
Q ss_pred EeCCCCEEEEEEEecC-CceEEEeecCcc----ccccCceEEEEeecc
Q psy9698 47 GNLPSGYTVVRVHFNN-PGMWYFHCHFVM----HTDTGMTLVFQVGDR 89 (123)
Q Consensus 47 ~v~pg~~~~irf~adn-pG~Wl~HCHi~~----H~~~GM~~~~~V~~~ 89 (123)
.|+||+....+|..+. +|.+.||+|... +...||.+.+.|.+.
T Consensus 119 ~I~PG~~~~y~f~~~~~aGT~WYH~H~~~~t~~qv~~GL~G~lII~d~ 166 (471)
T PRK10883 119 MMSPNADWAPVLPIRQNAATCWYHANTPNRMAQHVYNGLAGMWLVEDE 166 (471)
T ss_pred cCCCCCeEEEEEecCCCceeeEEccCCCCchhhhHhcCCeEEEEEeCC
Confidence 4789999999998764 899999999654 556899999999754
No 45
>TIGR03102 halo_cynanin halocyanin domain. Halocyanins are blue (type I) copper redox proteins found in halophilic archaea such as Natronobacterium pharaonis. This model represents a domain duplicated in some halocyanins, while appearing once in others. This domain includes the characteristic copper ligand residues. This family does not include plastocyanins, and does not include certain divergent paralogs of halocyanin.
Probab=91.84 E-value=0.34 Score=34.16 Aligned_cols=30 Identities=27% Similarity=0.545 Sum_probs=25.3
Q ss_pred EEEEecCCceEEEeecCccccccCceEEEEee
Q psy9698 56 VRVHFNNPGMWYFHCHFVMHTDTGMTLVFQVG 87 (123)
Q Consensus 56 irf~adnpG~Wl~HCHi~~H~~~GM~~~~~V~ 87 (123)
+.+.++.||.+.|+|- .|...||.+.+.|+
T Consensus 86 ~s~Tf~~~G~Y~Y~C~--pH~~~gM~G~I~V~ 115 (115)
T TIGR03102 86 YEHTFEEPGIYLYVCV--PHEALGMKGAVVVE 115 (115)
T ss_pred EEEEecCCcEEEEEcc--CCCCCCCEEEEEEC
Confidence 4445578999999998 89999999999884
No 46
>TIGR03390 ascorbOXfungal L-ascorbate oxidase, fungal type. This model describes a family of fungal ascorbate oxidases, within a larger family of multicopper oxidases that also includes plant ascorbate oxidases (TIGR03388), plant laccases and laccase-like proteins (TIGR03389), and related proteins. The member from Acremonium sp. HI-25 is characterized.
Probab=90.92 E-value=0.44 Score=41.42 Aligned_cols=42 Identities=14% Similarity=0.234 Sum_probs=35.3
Q ss_pred EeCCCCEEEEEEEec--CCceEEEeecCccccccCceEEEEeecc
Q psy9698 47 GNLPSGYTVVRVHFN--NPGMWYFHCHFVMHTDTGMTLVFQVGDR 89 (123)
Q Consensus 47 ~v~pg~~~~irf~ad--npG~Wl~HCHi~~H~~~GM~~~~~V~~~ 89 (123)
.|+||++.+.+|.++ .+|.+.||||..... .||.+.+.|.+.
T Consensus 87 pI~PG~sf~Y~f~~~~~q~GT~WYHsH~~~Q~-~~l~G~lIV~~~ 130 (538)
T TIGR03390 87 PIPPGHFFDYEIKPEPGDAGSYFYHSHVGFQA-VTAFGPLIVEDC 130 (538)
T ss_pred CCCCCCcEEEEEEecCCCCeeeEEecCCchhh-hcceeEEEEccC
Confidence 588999999999973 799999999986654 479999999753
No 47
>PF06525 SoxE: Sulfocyanin (SoxE); InterPro: IPR010532 Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterised as functionally different are the rusticyanins.
Probab=85.03 E-value=2.3 Score=32.88 Aligned_cols=42 Identities=19% Similarity=0.223 Sum_probs=36.1
Q ss_pred EeCCCCEEEEEEEecCCceEEEeecCccccccCceEEEEeec
Q psy9698 47 GNLPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVFQVGD 88 (123)
Q Consensus 47 ~v~pg~~~~irf~adnpG~Wl~HCHi~~H~~~GM~~~~~V~~ 88 (123)
.|.+|.....-+..-.||.+.+=|-+.-|...||-..+.|.+
T Consensus 146 GI~~G~s~~~~~~~l~aG~YwlvC~ipGHA~sGMw~~LiVs~ 187 (196)
T PF06525_consen 146 GISSGQSASGVYNDLPAGYYWLVCGIPGHAESGMWGVLIVSS 187 (196)
T ss_pred CccCCceeeEEEccCCCceEEEEccCCChhhcCCEEEEEEec
Confidence 455777777777777899999999999999999999999974
No 48
>TIGR02657 amicyanin amicyanin. Members of this family are amicyanin, a type I blue copper protein that accepts electrons from the tryptophan tryptophylquinone (TTQ) cofactor of the methylamine dehydrogenase light chain and then transfers them to the heme group of cytochrome c-551i. Amicyanin, methylamine dehydrogenase, and cytochrome c-551i are periplasmic and form a complex. This system has been studied primarily in Paracoccus denitrificans and Methylobacterium extorquens. Related type I blue copper proteins include plastocyanin, pseudoazurin, halocyanin, etc.
Probab=83.59 E-value=2.4 Score=27.48 Aligned_cols=33 Identities=18% Similarity=0.159 Sum_probs=23.6
Q ss_pred eCCCCEEEEEEEecCCceEEEeecCccccccCceEEEEe
Q psy9698 48 NLPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVFQV 86 (123)
Q Consensus 48 v~pg~~~~irf~adnpG~Wl~HCHi~~H~~~GM~~~~~V 86 (123)
+.++...+ +.++.||.+.|||-+-. +|.+.+.|
T Consensus 50 ~~~g~~~~--~tf~~~G~y~y~C~~Hp----~M~G~v~V 82 (83)
T TIGR02657 50 MKKEQAYS--LTFTEAGTYDYHCTPHP----FMRGKVVV 82 (83)
T ss_pred cCCCCEEE--EECCCCEEEEEEcCCCC----CCeEEEEE
Confidence 34555544 55678999999998633 48888876
No 49
>TIGR03094 sulfo_cyanin sulfocyanin. Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterized as functionally different are the rustacyanins.
Probab=80.93 E-value=4.2 Score=31.34 Aligned_cols=42 Identities=19% Similarity=0.262 Sum_probs=36.1
Q ss_pred EeCCCCEEEEEEEecCCceEEEeecCccccccCceEEEEeec
Q psy9698 47 GNLPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVFQVGD 88 (123)
Q Consensus 47 ~v~pg~~~~irf~adnpG~Wl~HCHi~~H~~~GM~~~~~V~~ 88 (123)
.+.+|....+-+..-.||.+.+=|-+.-|...||-+.+.|..
T Consensus 145 Gi~~Gqs~sg~~~~~~~G~YwlvCgipGHAesGMw~~lIVSs 186 (195)
T TIGR03094 145 GISSGHSRSGWWNDTSAGKYWLVCGITGHAESGMWAVVIVSS 186 (195)
T ss_pred cccccceeEEEeccCCCeeEEEEcccCChhhcCcEEEEEEec
Confidence 344677777777778999999999999999999999999874
No 50
>COG3794 PetE Plastocyanin [Energy production and conversion]
Probab=80.10 E-value=4.4 Score=29.20 Aligned_cols=30 Identities=30% Similarity=0.579 Sum_probs=24.1
Q ss_pred EEEEecCCceEEEeecCccccccCceEEEEee
Q psy9698 56 VRVHFNNPGMWYFHCHFVMHTDTGMTLVFQVG 87 (123)
Q Consensus 56 irf~adnpG~Wl~HCHi~~H~~~GM~~~~~V~ 87 (123)
....++.||.+.|.|- .|..+||-+.+.|+
T Consensus 98 ~~~Tfe~~G~Y~Y~C~--PH~~~gM~G~IvV~ 127 (128)
T COG3794 98 FTHTFETPGEYTYYCT--PHPGMGMKGKIVVG 127 (128)
T ss_pred eEEEecccceEEEEec--cCCCCCcEEEEEeC
Confidence 3344445999999995 69999999999886
No 51
>PF00116 COX2: Cytochrome C oxidase subunit II, periplasmic domain This family corresponds to chains b and o.; InterPro: IPR002429 Cytochrome c oxidase (1.9.3.1 from EC) [, ] is an oligomeric enzymatic complex which is a component of the respiratory chain and is involved in the transfer of electrons from cytochrome c to oxygen. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. The number of polypeptides in the complex ranges from 3-4 (prokaryotes), up to 13(mammals). Subunit 2 (CO II) transfers the electrons from cytochrome c to the catalytic subunit 1. It contains two adjacent transmembrane regions in its N terminus and the major part of the protein is exposed to the periplasmic or to the mitochondrial intermembrane space, respectively. CO II provides the substrate-binding site and contains a copper centre called Cu(A), probably the primary acceptor in cytochrome c oxidase. An exception is the corresponding subunit of the cbb3-type oxidase which lacks the copper A redox-centre. Several bacterial CO II have a C-terminal extension that contains a covalently bound haem c.; GO: 0004129 cytochrome-c oxidase activity, 0005507 copper ion binding, 0016020 membrane; PDB: 3OMN_D 3OMA_B 3OMI_D 3OM3_B 3EHB_B 1AR1_B 1QLE_B 3HB3_B 2IWK_B 2IWF_A ....
Probab=77.03 E-value=12 Score=26.10 Aligned_cols=40 Identities=20% Similarity=0.264 Sum_probs=27.9
Q ss_pred EeCCCCEEEEEEEecCCceEEEeecCcccc-ccCceEEEEe
Q psy9698 47 GNLPSGYTVVRVHFNNPGMWYFHCHFVMHT-DTGMTLVFQV 86 (123)
Q Consensus 47 ~v~pg~~~~irf~adnpG~Wl~HCHi~~H~-~~GM~~~~~V 86 (123)
.+.||....+.|.++.||.+-..|.-..-. ..-|.+.+.|
T Consensus 79 d~~PG~~~~~~~~~~~~G~y~~~C~e~CG~gH~~M~~~v~V 119 (120)
T PF00116_consen 79 DAIPGRTNSVTFTPDKPGTYYGQCAEYCGAGHSFMPGKVIV 119 (120)
T ss_dssp EEBTTCEEEEEEEESSSEEEEEEE-SSSSTTGGG-EEEEEE
T ss_pred ccccccceeeeeeeccCCcEEEcCccccCcCcCCCeEEEEE
Confidence 455899999999999999999999875543 3345555443
No 52
>TIGR02866 CoxB cytochrome c oxidase, subunit II. Cytochrome c oxidase is the terminal electron acceptor of mitochondria (and one of several possible acceptors in prokaryotes) in the electron transport chain of aerobic respiration. The enzyme couples the oxidation of reduced cytochrome c with the reduction of molecular oxygen to water. This process results in the pumping of four protons across the membrane which are used in the proton gradient powered synthesis of ATP. The oxidase contains two heme a cofactors and three copper atoms as well as other bound ions.
Probab=73.04 E-value=9.5 Score=28.83 Aligned_cols=46 Identities=17% Similarity=0.377 Sum_probs=34.7
Q ss_pred eeeEEeCCCCEEEEEEEecCCceEEEeecCcccc-ccCceEEEEeec
Q psy9698 43 KDTVGNLPSGYTVVRVHFNNPGMWYFHCHFVMHT-DTGMTLVFQVGD 88 (123)
Q Consensus 43 rDTv~v~pg~~~~irf~adnpG~Wl~HCHi~~H~-~~GM~~~~~V~~ 88 (123)
+--..+.||....+.|.++.||.+...|.-..-. ...|...+.|.+
T Consensus 146 ~~k~da~PG~~~~~~~~~~~~G~y~~~c~e~cG~~h~~M~~~v~v~~ 192 (201)
T TIGR02866 146 GGKIDAIPGQYNALWFNADEPGVYYGYCAELCGAGHSLMLFKVVVVE 192 (201)
T ss_pred CceEEecCCcEEEEEEEeCCCEEEEEEehhhCCcCccCCeEEEEEEC
Confidence 3344566899999999999999999999874422 367777777753
No 53
>COG2132 SufI Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=64.21 E-value=11 Score=31.78 Aligned_cols=47 Identities=15% Similarity=0.251 Sum_probs=38.7
Q ss_pred eeeEEeCCCCEEEEEEEecCCceEEEeecCccccccCceEEEEeecc
Q psy9698 43 KDTVGNLPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVFQVGDR 89 (123)
Q Consensus 43 rDTv~v~pg~~~~irf~adnpG~Wl~HCHi~~H~~~GM~~~~~V~~~ 89 (123)
...+.+.++.+.+..|..+.||..-||-|..-....||.+.+.|.+.
T Consensus 105 ~~~~~~~~~~~~~y~f~~~~~gT~wyh~H~~~Q~~~Gl~G~~II~~~ 151 (451)
T COG2132 105 LTQIPPGPGETPTYTFTQDVPGTYWYHPHTHGQVYDGLAGALIIEDE 151 (451)
T ss_pred ccccCCCCCCcEEEeecCCCCcceEeccCCCchhhcccceeEEEeCC
Confidence 34455668899999999998997778888877889999999999764
No 54
>TIGR02695 azurin azurin. Azurin is a blue copper-binding protein in the plastocyanin/azurin family (see Pfam model pfam00127). It serves as a redox partner to enzymes such as nitrite reductase or arsenite oxidase. The most closely related copper-binding proteins to this family are auracyanins, as in Chloroflexus aurantiacus, which have similar redox activities.
Probab=59.25 E-value=22 Score=25.57 Aligned_cols=45 Identities=20% Similarity=0.192 Sum_probs=37.7
Q ss_pred CceeeeEEeCCCCEEEEEEEec--CCce-EEEeecCccccccCceEEEE
Q psy9698 40 PIVKDTVGNLPSGYTVVRVHFN--NPGM-WYFHCHFVMHTDTGMTLVFQ 85 (123)
Q Consensus 40 p~~rDTv~v~pg~~~~irf~ad--npG~-Wl~HCHi~~H~~~GM~~~~~ 85 (123)
.+...|=.|.+|+...|.|.+. .||. +.|-|-.--|.. .|.+.+.
T Consensus 77 ~ViAhTkliggGes~svtF~~~~l~~g~~Y~f~CSFPGH~~-~MkG~l~ 124 (125)
T TIGR02695 77 RVIAHTKVIGGGEKTSVTFDVSKLSAGEDYTFFCSFPGHWA-MMRGTVK 124 (125)
T ss_pred ceEEEccccCCCceEEEEEECCCCCCCCcceEEEcCCCcHH-hceEEEe
Confidence 3567888899999999999985 5784 999999999997 6887764
No 55
>PF05938 Self-incomp_S1: Plant self-incompatibility protein S1; InterPro: IPR010264 This family consists of a series of plant proteins which are related to the Papaver rhoeas S1 self-incompatibility protein. Self-incompatibility (SI) is the single most important outbreeding device found in angiosperms and is a mechanism that regulates the acceptance or rejection of pollen. S1 is known to exhibit specific pollen-inhibitory properties [].
Probab=53.90 E-value=41 Score=22.58 Aligned_cols=39 Identities=26% Similarity=0.197 Sum_probs=31.9
Q ss_pred eEEeCCCCEEEEEEEecCCceEEEeecCccccccCc--eEEEEe
Q psy9698 45 TVGNLPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGM--TLVFQV 86 (123)
Q Consensus 45 Tv~v~pg~~~~irf~adnpG~Wl~HCHi~~H~~~GM--~~~~~V 86 (123)
...|.||+...+.|..+-.|.-++.|++.+ .|+ ...|.|
T Consensus 28 ~~~l~~g~~~~~~F~~~~~~~t~f~C~~~~---~~~~~~~~f~v 68 (110)
T PF05938_consen 28 WHVLKPGQSYSFSFRDNFFGTTLFWCHFRW---PGGKYHHSFDV 68 (110)
T ss_pred CEECCCCCEEEEEEecCcCCceeEEEEEEE---CCccEEEEEEE
Confidence 456889999999999887899999999998 454 556655
No 56
>PF10989 DUF2808: Protein of unknown function (DUF2808); InterPro: IPR021256 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=49.73 E-value=26 Score=25.13 Aligned_cols=27 Identities=22% Similarity=0.287 Sum_probs=20.5
Q ss_pred eCCCCEEEEEEEe-cCC---ceEEEeecCcc
Q psy9698 48 NLPSGYTVVRVHF-NNP---GMWYFHCHFVM 74 (123)
Q Consensus 48 v~pg~~~~irf~a-dnp---G~Wl~HCHi~~ 74 (123)
|+||..++|.+.. .|| |.|+|+|-...
T Consensus 99 V~pG~tv~V~l~~v~NP~~~G~Y~f~v~a~p 129 (146)
T PF10989_consen 99 VPPGTTVTVVLSPVRNPRSGGTYQFNVTAFP 129 (146)
T ss_pred CCCCCEEEEEEEeeeCCCCCCeEEEEEEEEC
Confidence 5789999999965 365 88888886543
No 57
>COG1622 CyoA Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion]
Probab=48.40 E-value=41 Score=26.69 Aligned_cols=48 Identities=17% Similarity=0.185 Sum_probs=36.3
Q ss_pred eeeeEEeCCCCEEEEEEEecCCceEEEeecCcc-ccccCceEEEEeecc
Q psy9698 42 VKDTVGNLPSGYTVVRVHFNNPGMWYFHCHFVM-HTDTGMTLVFQVGDR 89 (123)
Q Consensus 42 ~rDTv~v~pg~~~~irf~adnpG~Wl~HCHi~~-H~~~GM~~~~~V~~~ 89 (123)
.+.-+.+.||....+.+.++.||.+..+|.-.. .-...|...+.|.++
T Consensus 165 l~~k~d~iPG~~~~~~~~~~~~G~Y~g~Cae~CG~gH~~M~~~v~vvs~ 213 (247)
T COG1622 165 LGGKIDAIPGMTTELWLTANKPGTYRGICAEYCGPGHSFMRFKVIVVSQ 213 (247)
T ss_pred CCceeeecCCceEEEEEecCCCeEEEEEcHhhcCCCcccceEEEEEEcH
Confidence 344455668999999999999999999999755 334567777777543
No 58
>KOG3878|consensus
Probab=42.36 E-value=1e+02 Score=26.25 Aligned_cols=43 Identities=19% Similarity=0.143 Sum_probs=38.4
Q ss_pred eEEeCCCCEEEEEEEecCCceEEEeecCccccccCceEEEEee
Q psy9698 45 TVGNLPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVFQVG 87 (123)
Q Consensus 45 Tv~v~pg~~~~irf~adnpG~Wl~HCHi~~H~~~GM~~~~~V~ 87 (123)
++.|.-|+++++|+....-|..+|--...+|.+-|....|.-.
T Consensus 323 vItvGhGetVTVRVPThenGsclFWEFATD~YDIGFGvYFEWt 365 (469)
T KOG3878|consen 323 VITVGHGETVTVRVPTHENGSCLFWEFATDSYDIGFGVYFEWT 365 (469)
T ss_pred eEEecCCceEEEeccccCCCceEEEEeccccccccceEEEEee
Confidence 6788999999999999888999998889999999999988753
No 59
>COG4263 NosZ Nitrous oxide reductase [Energy production and conversion]
Probab=32.33 E-value=39 Score=29.88 Aligned_cols=47 Identities=19% Similarity=0.312 Sum_probs=34.3
Q ss_pred CceeeeEEeCCCCEEEEEEEecCCceEEEeecCcccc-ccCceEEEEe
Q psy9698 40 PIVKDTVGNLPSGYTVVRVHFNNPGMWYFHCHFVMHT-DTGMTLVFQV 86 (123)
Q Consensus 40 p~~rDTv~v~pg~~~~irf~adnpG~Wl~HCHi~~H~-~~GM~~~~~V 86 (123)
|-..-.+.+.|-...++-|.++.||.|++-|-.-.|. .+-|.+.+.|
T Consensus 588 p~~~v~~~v~pq~tasvtf~a~kpgv~w~ycs~fchalh~em~~rmlv 635 (637)
T COG4263 588 PNYGVNMEVKPQRTASVTFYADKPGVAWYYCSWFCHALHMEMAGRMLV 635 (637)
T ss_pred ccCceEEEEccCCceEEEEEccCCeeeehhhhhHHHHHHHhhccceee
Confidence 4445566778999999999999999999998766664 3344444444
No 60
>PF14392 zf-CCHC_4: Zinc knuckle
Probab=29.40 E-value=1.1e+02 Score=17.82 Aligned_cols=41 Identities=22% Similarity=0.405 Sum_probs=30.2
Q ss_pred CCCCceeee-EEeCCCCEEEEEEEecCCceEEEeecCccccc
Q psy9698 37 QPRPIVKDT-VGNLPSGYTVVRVHFNNPGMWYFHCHFVMHTD 77 (123)
Q Consensus 37 ~~~p~~rDT-v~v~pg~~~~irf~adnpG~Wl~HCHi~~H~~ 77 (123)
+..|..+.+ +..+.|+...+.+.-.....+=+||....|..
T Consensus 3 ~~kPL~~~i~v~~~~g~~~~~~v~YE~lp~~C~~C~~~gH~~ 44 (49)
T PF14392_consen 3 VSKPLRREIKVKFPEGESFWVKVKYERLPRFCFHCGRIGHSD 44 (49)
T ss_pred CCCcccceEEEEeCCCcEEEEEEEECCcChhhcCCCCcCcCH
Confidence 445555443 33556888888888888888899999988864
No 61
>PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain of unknown function is present in bacterial and plant peptidases belonging to MEROPS peptidase family S8 (subfamily S8A subtilisin, clan SB). It is C-terminal to and adjacent to the S8 peptidase domain and can be found in conjunction with the PA (Protease associated) domain (IPR003137 from INTERPRO) and additionally in Gram-positive bacteria with the surface protein anchor domain (IPR001899 from INTERPRO).; GO: 0004252 serine-type endopeptidase activity, 0005618 cell wall, 0016020 membrane; PDB: 3EIF_A 1XF1_B.
Probab=28.79 E-value=70 Score=21.46 Aligned_cols=22 Identities=27% Similarity=0.241 Sum_probs=16.2
Q ss_pred eeeeEEeCCCCEEEEEEEecCC
Q psy9698 42 VKDTVGNLPSGYTVVRVHFNNP 63 (123)
Q Consensus 42 ~rDTv~v~pg~~~~irf~adnp 63 (123)
..++|.|+||+...|.+..+-|
T Consensus 60 ~~~~vTV~ag~s~~v~vti~~p 81 (112)
T PF06280_consen 60 SPDTVTVPAGQSKTVTVTITPP 81 (112)
T ss_dssp --EEEEE-TTEEEEEEEEEE--
T ss_pred CCCeEEECCCCEEEEEEEEEeh
Confidence 4689999999999999999874
No 62
>MTH00047 COX2 cytochrome c oxidase subunit II; Provisional
Probab=28.64 E-value=2.4e+02 Score=21.40 Aligned_cols=41 Identities=15% Similarity=0.196 Sum_probs=28.6
Q ss_pred EeCCCCEEEEEEEecCCceEEEeecCcccc-ccCceEEEEee
Q psy9698 47 GNLPSGYTVVRVHFNNPGMWYFHCHFVMHT-DTGMTLVFQVG 87 (123)
Q Consensus 47 ~v~pg~~~~irf~adnpG~Wl~HCHi~~H~-~~GM~~~~~V~ 87 (123)
.+-||....+.+.++.||.+...|.-..=. ...|-..+.|-
T Consensus 149 d~~PG~~~~~~~~~~~~G~y~g~C~e~CG~~H~~M~~~v~v~ 190 (194)
T MTH00047 149 DAIPGRINHLFFCPDRHGVFVGYCSELCGVGHSYMPIVIEVV 190 (194)
T ss_pred ecCCCceEEEEEEcCCCEEEEEEeehhhCcCcccCcEEEEEE
Confidence 444799999999999999999999754422 23455555554
No 63
>PRK10378 inactive ferrous ion transporter periplasmic protein EfeO; Provisional
Probab=28.36 E-value=92 Score=26.33 Aligned_cols=36 Identities=17% Similarity=0.204 Sum_probs=26.0
Q ss_pred EeCCCCEEEEEEEecCCceEEEeecCccccccCceEEEEee
Q psy9698 47 GNLPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVFQVG 87 (123)
Q Consensus 47 ~v~pg~~~~irf~adnpG~Wl~HCHi~~H~~~GM~~~~~V~ 87 (123)
.|.||....+.+.. .||.+.|+| ..| ..|.+.|.|.
T Consensus 81 nIaPG~s~~l~~~L-~pGtY~~~C--~~~--~~~~g~l~Vt 116 (375)
T PRK10378 81 NIAPGFSQKMTANL-QPGEYDMTC--GLL--TNPKGKLIVK 116 (375)
T ss_pred ccCCCCceEEEEec-CCceEEeec--CcC--CCCCceEEEe
Confidence 67788777766555 699999999 335 4457777775
No 64
>MTH00140 COX2 cytochrome c oxidase subunit II; Provisional
Probab=28.23 E-value=1.3e+02 Score=23.17 Aligned_cols=41 Identities=17% Similarity=0.374 Sum_probs=27.1
Q ss_pred EeCCCCEEEEEEEecCCceEEEeecCcccc-ccCceEEEEee
Q psy9698 47 GNLPSGYTVVRVHFNNPGMWYFHCHFVMHT-DTGMTLVFQVG 87 (123)
Q Consensus 47 ~v~pg~~~~irf~adnpG~Wl~HCHi~~H~-~~GM~~~~~V~ 87 (123)
...||....+.+.++.||.+...|.-.... ...|-..+.|.
T Consensus 173 d~~Pg~~~~~~~~~~~~g~y~~~C~e~CG~~H~~M~~~v~v~ 214 (228)
T MTH00140 173 DAIPGRLNQLSFEPKRPGVFYGQCSEICGANHSFMPIVVEAV 214 (228)
T ss_pred ECCCCcceeEEEEeCCCEEEEEECccccCcCcCCCeEEEEEE
Confidence 334688888888888888888888765543 34455555553
No 65
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=28.06 E-value=1.1e+02 Score=24.03 Aligned_cols=43 Identities=16% Similarity=0.134 Sum_probs=31.2
Q ss_pred ccccCCCCCceeeeEEeC-----------CCCEEEEEEEecCCceEEEeecCcc
Q psy9698 32 RLRTTQPRPIVKDTVGNL-----------PSGYTVVRVHFNNPGMWYFHCHFVM 74 (123)
Q Consensus 32 ~~~~n~~~p~~rDTv~v~-----------pg~~~~irf~adnpG~Wl~HCHi~~ 74 (123)
++.+++...-..+...++ -+++..|.|.+|.-|.|++++-...
T Consensus 91 IvkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~ 144 (250)
T PF02191_consen 91 IVKYDLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDN 144 (250)
T ss_pred EEEEECcCCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEecCCC
Confidence 455566555555555554 3677889999999999999987765
No 66
>TIGR01433 CyoA cytochrome o ubiquinol oxidase subunit II. This enzyme catalyzes the oxidation of ubiquinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. Subunit II is responsible for binding and oxidation of the ubiquinone substrate. This sequence is closely related to QoxA, which oxidizes quinol in gram positive bacteria but which is in complex with subunits which utilize cytochromes a in the reduction of molecular oxygen. Slightly more distantly related is subunit II of cytochrome c oxidase which uses cyt. c as the oxidant.
Probab=25.40 E-value=1.1e+02 Score=23.74 Aligned_cols=41 Identities=15% Similarity=0.038 Sum_probs=28.4
Q ss_pred EeCCCCEEEEEEEecCCceEEEeecCcccc-ccCceEEEEee
Q psy9698 47 GNLPSGYTVVRVHFNNPGMWYFHCHFVMHT-DTGMTLVFQVG 87 (123)
Q Consensus 47 ~v~pg~~~~irf~adnpG~Wl~HCHi~~H~-~~GM~~~~~V~ 87 (123)
..-||....+.|.++.||.+...|--..=. ...|...+.|.
T Consensus 172 DaiPG~~n~~~~~~~~~G~y~g~CaE~CG~~Ha~M~~~V~v~ 213 (226)
T TIGR01433 172 YAMAGMQTKLHLIANEPGVYDGISANYSGPGFSGMKFKAIAT 213 (226)
T ss_pred ecCCCceEEEEEEeCCCEEEEEEchhhcCcCccCCeEEEEEE
Confidence 334799999999999999999999753321 24555555553
No 67
>TIGR01432 QOXA cytochrome aa3 quinol oxidase, subunit II. This enzyme catalyzes the oxidation of quinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. This subunit contains two transmembrane helices and a large external domain responsible for the binding and oxidation of quinol. QuoX is (presently) only found in gram positive bacteria of the Bacillus/Staphylococcus group. Like CyoA, the ubiquinol oxidase found in proteobacteria, the residues responsible for the ligation of Cu(a) and cytochrome c (found in the related cyt. c oxidases) are absent. Unlike CyoA, QoxA is in complex with a subunit I which contains cytochromes a similar to the cyt. c oxidases (as opposed to cytochromes b).
Probab=24.43 E-value=1.2e+02 Score=23.13 Aligned_cols=41 Identities=5% Similarity=-0.192 Sum_probs=28.8
Q ss_pred EeCCCCEEEEEEEecCCceEEEeecCccc-cccCceEEEEee
Q psy9698 47 GNLPSGYTVVRVHFNNPGMWYFHCHFVMH-TDTGMTLVFQVG 87 (123)
Q Consensus 47 ~v~pg~~~~irf~adnpG~Wl~HCHi~~H-~~~GM~~~~~V~ 87 (123)
..-||....+.|.++.||.+--.|--..= ...-|...+.|-
T Consensus 163 daiPG~~~~~~~~~~~~G~y~g~Cae~CG~~Hs~M~~~v~v~ 204 (217)
T TIGR01432 163 YAMTGMTMNWYLQADQVGTYRGRNANFNGEGFADQTFDVNAV 204 (217)
T ss_pred ecCCCceEEEEEEeCCCEEEEEEehhhcCccccCCeEEEEEe
Confidence 44489999999999999999999964331 123455555553
No 68
>PF10670 DUF4198: Domain of unknown function (DUF4198)
Probab=20.38 E-value=1e+02 Score=22.50 Aligned_cols=17 Identities=18% Similarity=0.669 Sum_probs=12.2
Q ss_pred EEEEecCCceEEEeecC
Q psy9698 56 VRVHFNNPGMWYFHCHF 72 (123)
Q Consensus 56 irf~adnpG~Wl~HCHi 72 (123)
+.|....+|.|++....
T Consensus 195 ~~~~~~~~G~wli~a~~ 211 (215)
T PF10670_consen 195 ATFTLPRPGLWLIRASH 211 (215)
T ss_pred EEEecCCCEEEEEEEEE
Confidence 44555688999988754
No 69
>PTZ00047 cytochrome c oxidase subunit II; Provisional
Probab=20.14 E-value=1.9e+02 Score=21.66 Aligned_cols=40 Identities=18% Similarity=0.307 Sum_probs=27.0
Q ss_pred eCCCCEEEEEEEecCCceEEEeecCcccc-ccCceEEEEee
Q psy9698 48 NLPSGYTVVRVHFNNPGMWYFHCHFVMHT-DTGMTLVFQVG 87 (123)
Q Consensus 48 v~pg~~~~irf~adnpG~Wl~HCHi~~H~-~~GM~~~~~V~ 87 (123)
+.||....+.+.++.||.+...|.-..=. ...|-..+.|-
T Consensus 107 avPGr~n~l~~~~~~~G~y~gqCsElCG~gHs~M~~~V~vv 147 (162)
T PTZ00047 107 AIPGRLHKINTFILREGVFYGQCSEMCGTLHGFMPIVVEAV 147 (162)
T ss_pred ccCCceEEEEEecCCCeEEEEEcchhcCcCccCceEEEEEe
Confidence 34788888888888999999999754311 13355555553
Done!