RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9698
(123 letters)
>1aoz_A Ascorbate oxidase; oxidoreductase(oxygen acceptor); HET: NAG; 1.90A
{Cucurbita pepo var} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 PDB:
1aso_A* 1asp_A* 1asq_A*
Length = 552
Score = 77.7 bits (192), Expect = 4e-18
Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Query: 40 PIVKDTVGNLPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVFQVGDRKQFVRAPPHF 99
P +++TV P G+T +R +NPG+W FHCH H GM +VF G K R P
Sbjct: 477 PPLRNTVVIFPYGWTAIRFVADNPGVWAFHCHIEPHLHMGMGVVFAEGVEK-VGRIPTKA 535
Query: 100 PQCDNFQPAVTKQ 112
C ++
Sbjct: 536 LACGGTAKSLINN 548
>2q9o_A Laccase-1; multicopper oxidase, 2-OXOH oxidoreductase; HET: OHI NAG
MAN GOL; 1.30A {Melanocarpus albomyces} SCOP: b.6.1.3
b.6.1.3 b.6.1.3 PDB: 3fu7_A* 3fu8_A* 3fu7_B* 1gw0_A*
2ih9_A* 2ih8_A* 3fu9_A* 3qpk_A* 3dkh_A* 3pps_A*
Length = 559
Score = 70.5 bits (173), Expect = 1e-15
Identities = 18/71 (25%), Positives = 30/71 (42%), Gaps = 5/71 (7%)
Query: 40 PIVKDTVGNLPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVFQVGD---RKQFVRAP 96
P +DT G+ ++ +NPG W FHCH H G+++ F R++ +
Sbjct: 473 PPRRDTTMLPAGGWLLLAFRTDNPGAWLFHCHIAWHVSGGLSVDFLERPADLRQRISQED 532
Query: 97 P--HFPQCDNF 105
CD +
Sbjct: 533 EDDFNRVCDEW 543
>1zpu_A Iron transport multicopper oxidase FET3; ferroxidase, oxidoreduc;
HET: NAG BMA MAN NDG; 2.80A {Saccharomyces cerevisiae}
Length = 534
Score = 68.5 bits (168), Expect = 6e-15
Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 5/70 (7%)
Query: 40 PIVKDTVGNLPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVFQVGD---RKQFVRAP 96
P+ +DT+ P V+R +NPG+W+FHCH H G+ LV + +
Sbjct: 433 PMRRDTLYVRPQSNFVIRFKADNPGVWFFHCHIEWHLLQGLGLVLVEDPFGIQDAHSQQL 492
Query: 97 P--HFPQCDN 104
H C +
Sbjct: 493 SENHLEVCQS 502
>1hfu_A Laccase 1; oxidoreductase, blue multi-copper oxidase, type-2 copper
depleted, signal, glycoprotein; HET: MAN NAG NDG; 1.68A
{Coprinus cinereus} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 PDB:
1a65_A*
Length = 503
Score = 68.5 bits (168), Expect = 7e-15
Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 4/72 (5%)
Query: 40 PIVKDTVGNLPSG-YTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVF--QVGDRKQFVRAP 96
P+ +D V +G +R +NPG W+FHCH H G+ +VF + + P
Sbjct: 421 PVKRDVVSLGVTGDEVTIRFVTDNPGPWFFHCHIEFHLMNGLAIVFAEDMANTVDANNPP 480
Query: 97 P-HFPQCDNFQP 107
C+ +
Sbjct: 481 VEWAQLCEIYDD 492
>3sqr_A Laccase; multicopper oxidase, glycosylation, oxidoreductase; HET:
NAG BMA MAN; 1.67A {Botrytis aclada}
Length = 580
Score = 68.2 bits (167), Expect = 9e-15
Identities = 16/69 (23%), Positives = 24/69 (34%), Gaps = 3/69 (4%)
Query: 40 PIVKDTVGNLPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVF--QVGDRKQFVRAPP 97
P +D +GY + +NPG W HCH H G+ + F +
Sbjct: 496 PPRRDVAALPGNGYLAIAFKLDNPGSWLLHCHIAWHASEGLAMQFVESQSSIAVKMTDTA 555
Query: 98 -HFPQCDNF 105
C N+
Sbjct: 556 IFEDTCANW 564
>3t6v_A Laccase; beta barrel, oxidoreductase; HET: CBS; 2.00A {Steccherinum
ochraceum} PDB: 3t6w_A* 3t6x_A* 3t6z_A* 3t71_A*
Length = 495
Score = 67.3 bits (165), Expect = 2e-14
Identities = 19/71 (26%), Positives = 29/71 (40%), Gaps = 6/71 (8%)
Query: 40 PIVKDTVGNLPS--GYTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVF--QVGDRKQFVRA 95
PI +D V + +R +NPG W+ HCH H D G +VF + +
Sbjct: 422 PIWRDVVS-IGGVGDNVTIRFCTDNPGPWFLHCHIDWHLDAGFAIVFAEDIPNTASANPV 480
Query: 96 PP-HFPQCDNF 105
P C ++
Sbjct: 481 PEAWSNLCPSY 491
>3pxl_A Laccase; 4-copper protein, metal-binding, oxidoreductase, type-2
Cu-D; HET: NAG BMA MAN; 1.20A {Trametes hirsuta} PDB:
3fpx_A* 3v9c_A* 3div_A* 2h5u_A* 2xyb_A* 1kya_A* 1gyc_A*
2qt6_A* 2hrg_A* 2hrh_A* 4a2f_A* 2vdz_A* 4a2d_A* 4a2e_A*
4a2g_A* 4a2h_A* 2ve0_A* 2vds_A* 2hzh_A* 3kw7_A*
Length = 499
Score = 66.2 bits (162), Expect = 4e-14
Identities = 20/72 (27%), Positives = 26/72 (36%), Gaps = 6/72 (8%)
Query: 40 PIVKDTVG---NLPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVFQVG--DRKQFVR 94
PI +D V +R NNPG W+ HCH H + G +V D K
Sbjct: 420 PIFRDVVSTGTPAAGDNVTIRFDTNNPGPWFLHCHIDFHLEGGFAVVMAEDTPDVKAVNP 479
Query: 95 APP-HFPQCDNF 105
P C +
Sbjct: 480 VPQAWSDLCPTY 491
>1v10_A Laccase; multicopper blue oxidase, oxidase; 1.7A {Rigidoporus
lignosus} SCOP: b.6.1.3 b.6.1.3 b.6.1.3
Length = 521
Score = 65.0 bits (159), Expect = 1e-13
Identities = 18/71 (25%), Positives = 28/71 (39%), Gaps = 6/71 (8%)
Query: 40 PIVKDTVGNLPSG--YTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVFQVGD---RKQFVR 94
P+ +D V + G R +NPG W+ HCH H + G+ +VF
Sbjct: 442 PVRRDVVS-IGGGGDNVTFRFVTDNPGPWFLHCHIDWHLEAGLAVVFAEDIPNIPIANAI 500
Query: 95 APPHFPQCDNF 105
+P C +
Sbjct: 501 SPAWDDLCPKY 511
>2xu9_A Laccase; oxidoreductase, multicopper oxidases; 1.50A {Thermus
thermophilus} PDB: 2xuw_A 2xvb_A 2yae_A 2yaf_A 2yah_A
2yam_A 2yao_A 2yap_A 2yaq_A 2yar_A 4ai7_A
Length = 439
Score = 64.9 bits (158), Expect = 1e-13
Identities = 18/50 (36%), Positives = 20/50 (40%)
Query: 38 PRPIVKDTVGNLPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVFQVG 87
P KD V + V G FHCH V H D GM V +VG
Sbjct: 390 PYRAWKDVVNLKAGEVARLLVPLREKGRTVFHCHIVEHEDRGMMGVLEVG 439
>3zx1_A Oxidoreductase, putative; laccase, metallo-oxidase, cuprous
oxidase; 1.95A {Campylobacter jejuni subsp}
Length = 481
Score = 61.5 bits (149), Expect = 2e-12
Identities = 13/63 (20%), Positives = 27/63 (42%)
Query: 26 LDQEGPRLRTTQPRPIVKDTVGNLPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVFQ 85
+ + ++DT+ P+ +R+ + G+ +HCH + H D GM +
Sbjct: 419 ISSKLNGKVQKAEFRALRDTINVRPNEELRLRMKQDFKGLRMYHCHILEHEDLGMMGNLE 478
Query: 86 VGD 88
V +
Sbjct: 479 VKE 481
>3abg_A Bilirubin oxidase; cleavage on PAIR of basic residues, glyco
metal-binding, oxidoreductase; HET: NAG BMA NDG; 2.30A
{Myrothecium verrucaria} PDB: 2xll_A*
Length = 534
Score = 58.1 bits (140), Expect = 3e-11
Identities = 19/68 (27%), Positives = 27/68 (39%), Gaps = 3/68 (4%)
Query: 43 KDTVGNLPSGYTVVRVHF-NNPGMWYFHCHFVMHTDTGMTLVFQVGDRKQFVRAPPHF-- 99
KD V VV H+ PG++ FHCH ++H D M F + F
Sbjct: 429 KDVVWLGRRETVVVEAHYAPFPGVYMFHCHNLIHEDHDMMAAFNATVLPDYGYNATVFVD 488
Query: 100 PQCDNFQP 107
P + +Q
Sbjct: 489 PMEELWQA 496
>2wsd_A Spore coat protein A; oxidoreductase, multi-copper oxidase,
sporulation, COTA- LAC copper centre; 1.60A {Bacillus
subtilis} PDB: 1gsk_A 1hkp_A 1hkz_A 1hl0_A 1hl1_A
1of0_A* 1ogr_A 1uvw_A* 1w6l_A 1w6w_A 1w8e_A 2bhf_A
2x87_A 2x88_A* 4a67_A 4akq_A 4a68_A* 4akp_A* 4a66_A
4ako_A
Length = 513
Score = 55.9 bits (134), Expect = 2e-10
Identities = 15/65 (23%), Positives = 23/65 (35%), Gaps = 1/65 (1%)
Query: 25 QLDQEGPRLRTTQPRPIVKDTVGNLPSGYTVVRVHF-NNPGMWYFHCHFVMHTDTGMTLV 83
+L GP + KDT+ + F G + +HCH + H D M
Sbjct: 446 ELSYTGPAVPPPPSEKGWKDTIQAHAGEVLRIAATFGPYSGRYVWHCHALEHEDYDMMRP 505
Query: 84 FQVGD 88
+ D
Sbjct: 506 MDITD 510
>2g23_A PHS, phenoxazinone synthase; copper, metalloprotein, laccase,
multicopper oxidase, hexamer; 2.30A {Streptomyces
antibioticus} PDB: 3gyr_A
Length = 612
Score = 54.5 bits (130), Expect = 6e-10
Identities = 14/47 (29%), Positives = 17/47 (36%), Gaps = 1/47 (2%)
Query: 43 KDTVGNLPSGYTVVRVHF-NNPGMWYFHCHFVMHTDTGMTLVFQVGD 88
KD V F G + +HCH + H D GM F V
Sbjct: 545 KDVFQVPGPQGLRVMGKFDGAYGRFMYHCHLLEHEDMGMMRPFVVMP 591
>1sdd_A Coagulation factor V; copper-binding protein, cofactor, blood
clottin; HET: NAG NDG; 2.80A {Bos taurus} SCOP: b.6.1.3
b.6.1.3
Length = 306
Score = 51.3 bits (122), Expect = 6e-09
Identities = 6/50 (12%), Positives = 13/50 (26%)
Query: 39 RPIVKDTVGNLPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVFQVGD 88
+ + + T + + G W H GM + +
Sbjct: 251 NHHKISAITLVSATSTTANMTVSPEGRWTIASLIPRHFQAGMQAYIDIKN 300
>2r7e_A Coagulation factor VIII; ceruloplasmin fold, cupper protein fold,
C2 domain fold, ACU blood coagulation, disease mutation,
glycoprotein; HET: NAG BMA MAN; 3.70A {Homo sapiens}
PDB: 3cdz_A*
Length = 742
Score = 51.2 bits (121), Expect = 7e-09
Identities = 14/44 (31%), Positives = 21/44 (47%)
Query: 43 KDTVGNLPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVFQV 86
+DT+ P V + NPG+W CH + GMT + +V
Sbjct: 666 EDTLTLFPFSGETVFMSMENPGLWILGCHNSDFRNRGMTALLKV 709
Score = 50.0 bits (118), Expect = 2e-08
Identities = 8/59 (13%), Positives = 19/59 (32%)
Query: 43 KDTVGNLPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVFQVGDRKQFVRAPPHFPQ 101
+ ++ P + + + G + CH H GM +V + + +
Sbjct: 284 QASLEISPITFLTAQTLLMDLGQFLLFCHISSHQHDGMEAYVKVDSCPEEPQLRMKNNE 342
>2j5w_A Ceruloplasmin, ferroxidase; oxidoreductase, plasma protein, copper
transport, copper, transport, polymorphism, glycoprotein,
multi-copper oxidase; HET: NAG; 2.80A {Homo sapiens}
SCOP: b.6.1.3 b.6.1.3 b.6.1.3 b.6.1.3 b.6.1.3 PDB:
1kcw_A*
Length = 1065
Score = 51.1 bits (121), Expect = 8e-09
Identities = 14/61 (22%), Positives = 20/61 (32%)
Query: 30 GPRLRTTQPRPIVKDTVGNLPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVFQVGDR 89
G + D P Y + + PG+W HCH H GM + V
Sbjct: 1000 GHSFQYKHRGVYSSDVFDIFPGTYQTLEMFPRTPGIWLLHCHVTDHIHAGMETTYTVLQN 1059
Query: 90 K 90
+
Sbjct: 1060 E 1060
Score = 50.7 bits (120), Expect = 1e-08
Identities = 16/79 (20%), Positives = 26/79 (32%), Gaps = 1/79 (1%)
Query: 37 QPRPIVKDTVGNLPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVFQV-GDRKQFVRA 95
+ DT+ P+ + NPG W C + H G+ FQV K +
Sbjct: 305 TNKNYRIDTINLFPATLFDAYMVAQNPGEWMLSCQNLNHLKAGLQAFFQVQECNKSSSKD 364
Query: 96 PPHFPQCDNFQPAVTKQDW 114
++ A + W
Sbjct: 365 NIRGKHVRHYYIAAEEIIW 383
Score = 46.9 bits (110), Expect = 2e-07
Identities = 11/75 (14%), Positives = 24/75 (32%)
Query: 43 KDTVGNLPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVFQVGDRKQFVRAPPHFPQC 102
+DT P + + + G + C H GM + V ++ +
Sbjct: 672 RDTANLFPQTSLTLHMWPDTEGTFNVECLTTDHYTGGMKQKYTVNQCRRQSEDSTFYLGE 731
Query: 103 DNFQPAVTKQDWAAA 117
+ A + +W +
Sbjct: 732 RTYYIAAVEVEWDYS 746
>3aw5_A Multicopper oxidase; beta barrel, oxidoreductase; 2.00A
{Pyrobaculum aerophilum}
Length = 448
Score = 50.3 bits (120), Expect = 1e-08
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Query: 43 KDTVGNLPSGYTVVRVHFNNP---GMWYFHCHFVMHTDTGMTLVFQV 86
KDTV P + V+F+ ++ FHCH + H D GM + V
Sbjct: 401 KDTVLIWPGETVKIVVNFDAKKRGQLFPFHCHNLEHEDGGMMINIAV 447
>3od3_A Blue copper oxidase CUEO; multicopper oxidase, Cu(I) oxidase,
oxidoreductase; 1.10A {Escherichia coli} PDB: 1n68_A
2fqd_A* 2fqe_A* 2fqf_A* 2fqg_A* 3nsd_A 1kv7_A 3pau_A
3pav_A 3nsf_A 1pf3_A 3qqx_A 3nsc_A 3nt0_A 3uad_A 3uaa_A
3uac_A 3uab_A 3uae_A 3nsy_A ...
Length = 488
Score = 49.9 bits (119), Expect = 2e-08
Identities = 19/48 (39%), Positives = 23/48 (47%), Gaps = 5/48 (10%)
Query: 43 KDTVGNLPSGYTVVRVHFN----NPGMWYFHCHFVMHTDTGMTLVFQV 86
KDTV + + V V FN + HCH + H DTGM L F V
Sbjct: 442 KDTV-KVEGNVSEVLVKFNHDAPKEHAYMAHCHLLEHEDTGMMLGFTV 488
>3gdc_A Multicopper oxidase; beta sandwich, plasmid, oxidoreductase; 1.80A
{Arthrobacter SP}
Length = 288
Score = 49.4 bits (118), Expect = 2e-08
Identities = 11/48 (22%), Positives = 19/48 (39%)
Query: 39 RPIVKDTVGNLPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVFQV 86
DT+ + ++ + F PG + FH H + G F+V
Sbjct: 239 PSEYTDTISQVQGQRGILELRFPYPGKFMFHAHKTEFAELGWMGFFEV 286
Score = 24.8 bits (54), Expect = 9.5
Identities = 6/23 (26%), Positives = 8/23 (34%), Gaps = 3/23 (13%)
Query: 61 NNPGMWYFHCH---FVMHTDTGM 80
G +HCH H G+
Sbjct: 124 TPFGTHLYHCHQSPLAPHIAKGL 146
>3kw8_A Laccase, putative copper oxidase; two-domain laccase,
oxidoreductase, multicopper blue protein; HET: PG4 PGE;
2.29A {Streptomyces coelicolor}
Length = 276
Score = 49.2 bits (117), Expect = 3e-08
Identities = 16/67 (23%), Positives = 24/67 (35%), Gaps = 5/67 (7%)
Query: 37 QPRPIVKDTVGNLPSG---YTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVFQVGDRKQFV 93
V D P+ + ++ G W +HCH H+D GM +F V
Sbjct: 211 DDPSRVIDNKITGPADSFGFQIIAGEGVGAGAWMYHCHVQSHSDMGMVGLFLVKKPDG-- 268
Query: 94 RAPPHFP 100
P + P
Sbjct: 269 TIPGYEP 275
>3cg8_A Laccase; oxidoreductase, multicopper blue protein; HET: PG4; 2.68A
{Streptomyces coelicolor}
Length = 343
Score = 49.3 bits (117), Expect = 3e-08
Identities = 16/68 (23%), Positives = 24/68 (35%), Gaps = 5/68 (7%)
Query: 37 QPRPIVKDTVGNLPSG---YTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVFQVGDRKQFV 93
V D P+ + ++ G W +HCH H+D GM +F V
Sbjct: 252 DDPSRVIDNKITGPADSFGFQIIAGEGVGAGAWMYHCHVQSHSDMGMVGLFLVKKPDG-- 309
Query: 94 RAPPHFPQ 101
P + P
Sbjct: 310 TIPGYEPH 317
>3g5w_A Multicopper oxidase type 1; two domain, laccase, nitrifier, metal B
protein; 1.90A {Nitrosomonas europaea}
Length = 318
Score = 45.1 bits (107), Expect = 1e-06
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
Query: 38 PRPIVKDTVGNLPSG--YTVVRVHFNNPGMWYFHCHFVMHTDTGMT 81
+PI DTV + G Y V+ ++ +NPG+W H H HT G
Sbjct: 220 DKPIKGDTV-LIGPGERYDVI-LNMDNPGLWMIHDHVDTHTTNGDK 263
>2uxt_A Protein SUFI, SUFI; oxidoreductase, periplasmic, cupredoxin-like,
FTS mutant suppressor; 1.90A {Escherichia coli} PDB:
2uxv_A
Length = 451
Score = 44.6 bits (105), Expect = 2e-06
Identities = 12/53 (22%), Positives = 17/53 (32%), Gaps = 6/53 (11%)
Query: 38 PRPIVKDTVGNLPSGYTVVRVHFN----NPGMWYFHCHFVMHTDTGMTLVFQV 86
KDTV G + V+F +YF+ + D G V
Sbjct: 389 EDRGWKDTV--WVDGQVELLVYFGQPSWAHFPFYFNSQTLEMADRGSIGQLLV 439
>2zwn_A Two-domain type laccase; muticopper oxidase, oxidoreductase; 1.70A
{Metagenomes}
Length = 339
Score = 41.2 bits (97), Expect = 2e-05
Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 4/45 (8%)
Query: 38 PRPIVKDTVGNLPSG--YTVVRVHFNNPGMWYFHCHFVMHTDTGM 80
P DTV + G Y V+ + +NPG + FH H H G
Sbjct: 221 DSPYYADTV-LVSPGERYDVI-IEADNPGRFIFHDHVDTHVTAGG 263
>2dv6_A Nitrite reductase; electron transfer, reduction, denitrification,
oxidoreductase; 2.20A {Hyphomicrobium denitrificans}
Length = 447
Score = 36.4 bits (84), Expect = 9e-04
Identities = 8/37 (21%), Positives = 14/37 (37%)
Query: 50 PSGYTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVFQV 86
P G T+V + G + H + + G+ V
Sbjct: 395 PGGATIVDFKIDRAGRYILVDHALSRLEHGLVGFLNV 431
Score = 28.7 bits (64), Expect = 0.40
Identities = 10/61 (16%), Positives = 16/61 (26%), Gaps = 9/61 (14%)
Query: 50 PSGYTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVFQV---------GDRKQFVRAPPHFP 100
+ + + G + ++C H GM QV R P P
Sbjct: 94 KNASSTFSFVASKVGEFNYYCSIAGHRQAGMEGNIQVLPGNRAEMKSSGADITRDPADLP 153
Query: 101 Q 101
Sbjct: 154 G 154
Score = 25.2 bits (55), Expect = 6.5
Identities = 7/23 (30%), Positives = 10/23 (43%), Gaps = 3/23 (13%)
Query: 61 NNPGMWYFHCHFVM---HTDTGM 80
PG++ +HC H GM
Sbjct: 251 LIPGIYVYHCATPSVPTHITNGM 273
>2zoo_A Probable nitrite reductase; electron transfer, electron transport,
heme, iron, binding, oxidoreductase, transport; HET: SUC
HEM; 1.95A {Pseudoalteromonas haloplanktis}
Length = 442
Score = 34.9 bits (80), Expect = 0.004
Identities = 8/49 (16%), Positives = 14/49 (28%), Gaps = 1/49 (2%)
Query: 44 DTVGNLPSGYTVVRVHFNNPGMWYFHCHFVMHT-DTGMTLVFQVGDRKQ 91
T G +V PG + H + + G + +V
Sbjct: 252 QTTLIPAGGAAIVEFKVEVPGTFILVDHSIFRAFNKGALAMLKVEGPDD 300
Score = 27.2 bits (60), Expect = 1.8
Identities = 9/38 (23%), Positives = 15/38 (39%), Gaps = 3/38 (7%)
Query: 61 NNPGMWYFHCHFVM---HTDTGMTLVFQVGDRKQFVRA 95
NPG++ +HC H GM + V ++
Sbjct: 116 LNPGLYIYHCATAPVGMHIANGMYGLILVEPKEGLAPV 153
>1kbv_A ANIA, major outer membrane protein PAN 1; ANIA[NO2-],
oxidoreductase; 1.95A {Neisseria gonorrhoeae} SCOP:
b.6.1.3 b.6.1.3 PDB: 1kbw_A
Length = 327
Score = 34.1 bits (78), Expect = 0.007
Identities = 7/46 (15%), Positives = 14/46 (30%), Gaps = 1/46 (2%)
Query: 44 DTVGNLPSGYTVVRVHFNNPGMWYFHCHFVMHT-DTGMTLVFQVGD 88
+ G +V + PG + H + + G +V
Sbjct: 262 QSTIVPAGGSAIVEFKVDIPGNYTLVDHSIFRAFNKGALGQLKVEG 307
Score = 28.3 bits (63), Expect = 0.61
Identities = 8/33 (24%), Positives = 14/33 (42%), Gaps = 3/33 (9%)
Query: 61 NNPGMWYFHCHFVM---HTDTGMTLVFQVGDRK 90
PG++ +HC H GM + V ++
Sbjct: 126 LQPGLYIYHCAVAPVGMHIANGMYGLILVEPKE 158
>1oe1_A Dissimilatory copper-containing nitrite reductase; denitrification;
HET: PG4; 1.04A {Alcaligenes xylosoxidans} SCOP: b.6.1.3
b.6.1.3 PDB: 1oe3_A* 2xwz_A* 2vn3_A 2zon_A* 1haw_A
1hau_A* 2vm4_A* 2vw4_A* 2vw6_A* 2vw7_A* 2vm3_A* 1oe2_A*
2jl0_A* 2xx1_A 2xxg_A* 2xxf_A* 1gs8_A 1wa1_X* 1wa2_X*
2jl3_A* ...
Length = 336
Score = 30.9 bits (70), Expect = 0.087
Identities = 6/38 (15%), Positives = 13/38 (34%), Gaps = 1/38 (2%)
Query: 50 PSGYTVVRVHFNNPGMWYFHCHFVMHT-DTGMTLVFQV 86
F PG++ + H ++ + G +V
Sbjct: 279 GGSAGAALYTFKQPGVYAYLNHNLIEAFELGAAGHIKV 316
Score = 25.9 bits (57), Expect = 3.6
Identities = 6/24 (25%), Positives = 10/24 (41%), Gaps = 4/24 (16%)
Query: 61 NNPGMWYFHCHFV----MHTDTGM 80
+ G + +HC H +GM
Sbjct: 121 DRSGTFVYHCAPEGMVPWHVVSGM 144
>2bw4_A Copper-containing nitrite reductase; oxidoreductase,
denitrification, catalysis, enzyme mechanism, nitrate
assimilation; 0.90A {Achromobacter cycloclastes} SCOP:
b.6.1.3 b.6.1.3 PDB: 1nib_A 1nia_A 1nid_A 1nie_A 1nic_A
1nif_A 2bw5_A 2bwd_A 2bwi_A 2nrd_A 2y1a_A 1kcb_A 1rzp_A*
1rzq_A 2avf_A 1as6_A 1aq8_A 1as7_A 1as8_A 2afn_A ...
Length = 340
Score = 30.6 bits (69), Expect = 0.089
Identities = 7/38 (18%), Positives = 14/38 (36%), Gaps = 1/38 (2%)
Query: 50 PSGYTVVRVHFNNPGMWYFHCHFVMHT-DTGMTLVFQV 86
F PG++ + H ++ + G F+V
Sbjct: 285 GGTAGAAFYTFRQPGVYAYVNHNLIEAFELGAAGHFKV 322
Score = 26.4 bits (58), Expect = 3.2
Identities = 7/24 (29%), Positives = 11/24 (45%), Gaps = 4/24 (16%)
Query: 61 NNPGMWYFHCHFV----MHTDTGM 80
PG++ +HC H +GM
Sbjct: 127 TKPGVFVYHCAPEGMVPWHVTSGM 150
>1qhq_A Protein (auracyanin); electron transfer, cupredoxin, blue copper
protein, azurin-L thermophIle; 1.55A {Chloroflexus
aurantiacus} SCOP: b.6.1.1 PDB: 1ov8_A
Length = 140
Score = 30.3 bits (67), Expect = 0.10
Identities = 9/37 (24%), Positives = 11/37 (29%)
Query: 50 PSGYTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVFQV 86
V PG + + C F H GM V
Sbjct: 102 AGESGSVTFRTPAPGTYLYICTFPGHYLAGMKGTLTV 138
>3ef4_A Pseudoazurin, blue copper protein; electron transfer, electron
transport; HET: PO4; 1.18A {Hyphomicrobium
denitrificans}
Length = 124
Score = 29.3 bits (65), Expect = 0.17
Identities = 9/33 (27%), Positives = 14/33 (42%), Gaps = 2/33 (6%)
Query: 56 VRVHFNNPGMWYFHCHFVMHTDTGMTLVFQVGD 88
V + G++ C H GM ++ QVG
Sbjct: 65 VVFNAEKEGLYVLKCAP--HYGMGMVVLVQVGK 95
>1mzy_A Copper-containing nitrite reductase; mutant M182T, gating
mechanism, electron oxidoreductase; 1.46A {Rhodobacter
sphaeroides} SCOP: b.6.1.3 b.6.1.3 PDB: 1mzz_A 1n70_A
1zv2_A 2a3t_A 2dws_A 2dwt_A 2dy2_A
Length = 333
Score = 29.4 bits (66), Expect = 0.21
Identities = 7/38 (18%), Positives = 12/38 (31%), Gaps = 1/38 (2%)
Query: 50 PSGYTVVRVHFNNPGMWYFHCHFVMHT-DTGMTLVFQV 86
F PG++ + H ++ G T V
Sbjct: 279 GGTAGAALYKFLQPGVYAYVNHNLIEAVHKGATAHVLV 316
Score = 27.5 bits (61), Expect = 1.1
Identities = 7/31 (22%), Positives = 10/31 (32%), Gaps = 5/31 (16%)
Query: 61 NNPGMWYFHCHFV-----MHTDTGMTLVFQV 86
G + +HC H +GM V
Sbjct: 120 TRAGAFVYHCAPGGPMIPWHVVSGMAGCIMV 150
>3tu6_A Pseudoazurin (blue copper protein); cupredoxins, beta barrel,
electron transfer, redox, electron transport; 2.00A
{Sinorhizobium meliloti}
Length = 127
Score = 28.9 bits (64), Expect = 0.25
Identities = 8/29 (27%), Positives = 13/29 (44%), Gaps = 2/29 (6%)
Query: 60 FNNPGMWYFHCHFVMHTDTGMTLVFQVGD 88
+ PG++ + C H GM VG+
Sbjct: 70 LSKPGVYMYQCAP--HVGMGMIGAIVVGE 96
>2cal_A Rusticyanin; iron respiratory electron transport chain, blue
protein, electron transport, metal- binding,
periplasmic; 1.10A {Thiobacillus ferrooxidans} PDB:
1cur_A 1gy2_A 1a3z_A 1e30_A 1gy1_A 1rcy_A 1a8z_A 2cak_A
Length = 154
Score = 29.0 bits (64), Expect = 0.25
Identities = 6/28 (21%), Positives = 8/28 (28%)
Query: 53 YTVVRVHFNNPGMWYFHCHFVMHTDTGM 80
G +Y+ C TGM
Sbjct: 120 GYTDFTWHPTAGTYYYVCQIPGMAATGM 147
>2r7e_B Coagulation factor VIII; ceruloplasmin fold, cupper protein fold,
C2 domain fold, ACU blood coagulation, disease mutation,
glycoprotein; HET: NAG BMA MAN; 3.70A {Homo sapiens}
PDB: 3cdz_B*
Length = 770
Score = 29.4 bits (65), Expect = 0.31
Identities = 10/38 (26%), Positives = 16/38 (42%)
Query: 49 LPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVFQV 86
P + V + + G+W C H GM+ +F V
Sbjct: 417 YPGVFETVEMLPSKAGIWRVECLIGEHLHAGMSTLFLV 454
>3erx_A Pseudoazurin; copper protein, high-resolution, E transport,
metal-binding, transport; 1.25A {Paracoccus
pantotrophus} PDB: 1adw_A
Length = 123
Score = 28.5 bits (63), Expect = 0.34
Identities = 10/29 (34%), Positives = 13/29 (44%), Gaps = 2/29 (6%)
Query: 60 FNNPGMWYFHCHFVMHTDTGMTLVFQVGD 88
PG++ C H GM + QVGD
Sbjct: 68 VTEPGLYGVKCTP--HFGMGMVGLVQVGD 94
>1paz_A Pseudoazurin precursor; electron transfer(cuproprotein); 1.55A
{Alcaligenes faecalis} SCOP: b.6.1.1 PDB: 1pza_A 1pzb_A
1pzc_A 2p80_D 3nyk_A 3paz_A 8paz_A 4paz_A 5paz_A 6paz_A
7paz_A 1py0_A*
Length = 123
Score = 28.5 bits (63), Expect = 0.38
Identities = 9/29 (31%), Positives = 11/29 (37%), Gaps = 2/29 (6%)
Query: 60 FNNPGMWYFHCHFVMHTDTGMTLVFQVGD 88
PG + C H GM + VGD
Sbjct: 68 VTQPGAYLVKCTP--HYAMGMIALIAVGD 94
>1pmy_A Pseudoazurin; electron transfer(cuproprotein); 1.50A
{Methylobacterium extorquens} SCOP: b.6.1.1
Length = 123
Score = 27.7 bits (61), Expect = 0.59
Identities = 10/29 (34%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
Query: 60 FNNPGMWYFHCHFVMHTDTGMTLVFQVGD 88
F+ G++ F C H GM + VGD
Sbjct: 68 FDKEGVYGFKCAP--HYMMGMVALVVVGD 94
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 28.1 bits (62), Expect = 0.97
Identities = 8/44 (18%), Positives = 18/44 (40%), Gaps = 6/44 (13%)
Query: 72 FVMHTDTGMTLVFQVGDRKQFVRAPPHFPQCDNFQPAVTKQDWA 115
F + +T++F +G R A +P + P++ +
Sbjct: 292 FFVSVRKAITVLFFIGVRCY--EA---YPNT-SLPPSILEDSLE 329
Score = 26.6 bits (58), Expect = 3.0
Identities = 16/100 (16%), Positives = 33/100 (33%), Gaps = 37/100 (37%)
Query: 52 GYTVVRVHFNNPGMWYFHCHFVMHTDTG----------MTLVFQVGDRKQFVRAPPHFPQ 101
G++++ + NNP HF G ++F+ ++ F +
Sbjct: 1658 GFSILDIVINNPVNLTI--HF-----GGEKGKRIRENYSAMIFETIV-DGKLKTEKIFKE 1709
Query: 102 CD-------------------NFQPAVTKQDWAAAKNLEK 122
+ QPA+T + AA ++L+
Sbjct: 1710 INEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKS 1749
>1ws8_A Mavicyanin; oxidized form, phytocyanin, cupredoxin, electron
transport; 1.60A {Cucurbita pepo} SCOP: b.6.1.1 PDB:
1ws7_A
Length = 109
Score = 26.8 bits (59), Expect = 1.2
Identities = 11/51 (21%), Positives = 15/51 (29%), Gaps = 7/51 (13%)
Query: 36 TQPRPIVKDTVGNLPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVFQV 86
P T G + PG +YF C H G + +V
Sbjct: 59 NSSSPAASYTSGA-------DSIPLKRPGTFYFLCGIPGHCQLGQKVEIKV 102
>1x9u_A Umecyanin; cupredoxin, phytocyanin, copper binding site, beta
barrel, electron transport; 1.80A {Armoracia rusticana}
PDB: 1x9r_A
Length = 116
Score = 26.0 bits (57), Expect = 2.0
Identities = 12/51 (23%), Positives = 16/51 (31%), Gaps = 7/51 (13%)
Query: 36 TQPRPIVKDTVGNLPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVFQV 86
+ PI T V++ N G Y+ C H G L V
Sbjct: 59 KKENPISHMTTPP-------VKIMLNTTGPQYYICTVGDHCRVGQKLSINV 102
>1jer_A Cucumber stellacyanin; electron transport, copper, glycoprotein,
hydroxylation; 1.60A {Cucumis sativus} SCOP: b.6.1.1
Length = 138
Score = 26.1 bits (57), Expect = 2.2
Identities = 13/52 (25%), Positives = 17/52 (32%), Gaps = 1/52 (1%)
Query: 46 VGNLPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVFQVGDRKQFVRAPP 97
++ V+ + GM YF C H G L V V PP
Sbjct: 67 DNDVERTSPVIE-RLDELGMHYFVCTVGTHCSNGQKLSINVVAANATVSMPP 117
>1iby_A Nitrosocyanin; RED copper, cupredoxin, beta hairpin, metal binding
protein; 1.65A {Nitrosomonas europaea} SCOP: b.6.1.4
PDB: 1ibz_A 1ic0_A
Length = 112
Score = 25.2 bits (55), Expect = 4.0
Identities = 3/40 (7%), Positives = 8/40 (20%), Gaps = 1/40 (2%)
Query: 49 LPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVFQVGD 88
+ + G + C + V +
Sbjct: 74 KAGETKTISFTADKAGAFTIWCQLHPKNI-HLPGTLNVVE 112
>2qs8_A XAA-Pro dipeptidase; amidohydrolase, TIM barrel, protein
structure initiative, PSI-2, NYSGXRC, structural
genomics; 2.33A {Alteromonas macleodii} SCOP: b.92.1.9
c.1.9.18
Length = 418
Score = 25.8 bits (57), Expect = 4.3
Identities = 11/48 (22%), Positives = 17/48 (35%), Gaps = 6/48 (12%)
Query: 51 SGYTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVFQVGDRKQFVRAPPH 98
+TV+ PG+ H HF + +V Q + A H
Sbjct: 57 RDHTVL------PGLMDMHVHFGQEYQSKAQAPIKVEREMQAILATQH 98
>2zze_A Alanyl-tRNA synthetase; ligase, hydrolase; HET: MLY; 2.16A
{Pyrococcus horikoshii} PDB: 2zzf_A 2zzg_A*
Length = 752
Score = 25.8 bits (55), Expect = 4.6
Identities = 14/53 (26%), Positives = 21/53 (39%), Gaps = 1/53 (1%)
Query: 2 YILKQGKIPPNVDKGLFLSQLIRQLDQEGPRLRTTQP-RPIVKDTVGNLPSGY 53
++L G +P NV G LIR+ + L P IV + L +
Sbjct: 350 FMLADGVVPSNVXAGYLARLLIRKSIRHLRELGLEVPLSEIVALHIXELHKTF 402
>3uyj_A Lysine-specific demethylase 8; jellyroll-like all beta fold,
nuclear, oxidored; HET: AKG; 2.35A {Homo sapiens} PDB:
4aap_A*
Length = 248
Score = 25.5 bits (56), Expect = 5.8
Identities = 7/29 (24%), Positives = 9/29 (31%)
Query: 74 MHTDTGMTLVFQVGDRKQFVRAPPHFPQC 102
+H D + QV RK P
Sbjct: 152 LHQDPQQNFLVQVMGRKYIRLYSPQESGA 180
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved
in replication initiation, csgid, IDP90222; HET: DGI;
1.80A {Bacillus anthracis str}
Length = 368
Score = 24.9 bits (54), Expect = 9.4
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 11 PNVDKGLFLSQLIRQLDQEGPRLRTTQPRP 40
NV K F++++I++ E + TT P
Sbjct: 169 TNVGKSTFINRMIKEFSDETENVITTSHFP 198
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 24.8 bits (53), Expect = 9.5
Identities = 11/95 (11%), Positives = 28/95 (29%), Gaps = 27/95 (28%)
Query: 8 KIPPNV-----------DKGLFLSQLIRQ--LDQEGPR---------LRTTQPRPIVKDT 45
IP + D + +++L + ++++ L
Sbjct: 386 HIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYAL 445
Query: 46 VGNLPSGYTVVRVHFNN---PGMW--YFHCHFVMH 75
++ Y + + ++ P YF+ H H
Sbjct: 446 HRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHH 480
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.139 0.452
Gapped
Lambda K H
0.267 0.0585 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,931,587
Number of extensions: 103282
Number of successful extensions: 282
Number of sequences better than 10.0: 1
Number of HSP's gapped: 275
Number of HSP's successfully gapped: 73
Length of query: 123
Length of database: 6,701,793
Length adjustment: 82
Effective length of query: 41
Effective length of database: 4,412,271
Effective search space: 180903111
Effective search space used: 180903111
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (23.7 bits)