RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy9698
(123 letters)
>d1aoza3 b.6.1.3 (A:339-552) Ascorbate oxidase {Zucchini (Cucurbita
pepo var. medullosa) [TaxId: 3663]}
Length = 214
Score = 65.3 bits (158), Expect = 8e-15
Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Query: 38 PRPIVKDTVGNLPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVFQVGDRKQFVRAPP 97
P +++TV P G+T +R +NPG+W FHCH H GM +VF G + R P
Sbjct: 137 KNPPLRNTVVIFPYGWTAIRFVADNPGVWAFHCHIEPHLHMGMGVVFAEGVE-KVGRIPT 195
Query: 98 HFPQCDNFQPAVTK 111
C ++
Sbjct: 196 KALACGGTAKSLIN 209
>d2q9oa3 b.6.1.3 (A:344-559) Laccase {Melanocarpus albomyces [TaxId:
204285]}
Length = 216
Score = 62.6 bits (151), Expect = 1e-13
Identities = 23/110 (20%), Positives = 36/110 (32%), Gaps = 11/110 (10%)
Query: 1 MYILKQGKIPPNVDKGLFLSQLIRQLDQEGPRLRTTQPRPIVKDTVGNLPSGYTVVRVHF 60
+L + P + F D R P +DT G+ ++
Sbjct: 97 FLVLGRSPDVPAASQQRF------VFDPAVDLARLNGDNPPRRDTTMLPAGGWLLLAFRT 150
Query: 61 NNPGMWYFHCHFVMHTDTGMTLVF-----QVGDRKQFVRAPPHFPQCDNF 105
+NPG W FHCH H G+++ F + R CD +
Sbjct: 151 DNPGAWLFHCHIAWHVSGGLSVDFLERPADLRQRISQEDEDDFNRVCDEW 200
>d1gska3 b.6.1.3 (A:357-510) Spore coat protein A, CotA {Bacillus
subtilis [TaxId: 1423]}
Length = 154
Score = 61.2 bits (148), Expect = 1e-13
Identities = 15/65 (23%), Positives = 23/65 (35%), Gaps = 1/65 (1%)
Query: 25 QLDQEGPRLRTTQPRPIVKDTVGNLPSGYTVVRVHF-NNPGMWYFHCHFVMHTDTGMTLV 83
+L GP + KDT+ + F G + +HCH + H D M
Sbjct: 90 ELSYTGPAVPPPPSEKGWKDTIQAHAGEVLRIAATFGPYSGRYVWHCHILEHEDYDMMRP 149
Query: 84 FQVGD 88
+ D
Sbjct: 150 MDITD 154
>d1gyca3 b.6.1.3 (A:301-499) Laccase {Trametes versicolor, laccase 2
[TaxId: 5325]}
Length = 199
Score = 60.3 bits (145), Expect = 7e-13
Identities = 19/71 (26%), Positives = 26/71 (36%), Gaps = 3/71 (4%)
Query: 38 PRPIVKDTVGNLPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVF--QVGDRKQFVRA 95
V T +R +NPG W+ HCH H + G +VF V D K
Sbjct: 121 IFRDVVSTGTPAAGDNVTIRFQTDNPGPWFLHCHIDFHLEAGFAIVFAEDVADVKAANPV 180
Query: 96 PPHFPQ-CDNF 105
P + C +
Sbjct: 181 PKAWSDLCPIY 191
>d1hfua3 b.6.1.3 (A:304-503) Laccase {Inky cap fungus (Coprinus
cinereus) [TaxId: 5346]}
Length = 200
Score = 59.1 bits (142), Expect = 2e-12
Identities = 21/85 (24%), Positives = 35/85 (41%), Gaps = 4/85 (4%)
Query: 25 QLDQEGPRLRTTQPRPIVKDTVGNLPSGYTV-VRVHFNNPGMWYFHCHFVMHTDTGMTLV 83
+ + P+ +D V +G V +R +NPG W+FHCH H G+ +V
Sbjct: 103 SVVRSAGSSTYNFVNPVKRDVVSLGVTGDEVTIRFVTDNPGPWFFHCHIEFHLMNGLAIV 162
Query: 84 FQV--GDRKQFVRAPPHFPQ-CDNF 105
F + P + Q C+ +
Sbjct: 163 FAEDMANTVDANNPPVEWAQLCEIY 187
>d1sddb2 b.6.1.3 (B:1724-1862) Coagulation factor V {Cow (Bos
taurus) [TaxId: 9913]}
Length = 139
Score = 52.1 bits (124), Expect = 3e-10
Identities = 10/57 (17%), Positives = 16/57 (28%)
Query: 30 GPRLRTTQPRPIVKDTVGNLPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVFQV 86
G L + LP + + + + PG W GM F +
Sbjct: 82 GQTLLENGTQQHQLGVWPLLPGSFKTLEMKASKPGWWLLDTEVGEIQRAGMQTPFLI 138
>d1v10a3 b.6.1.3 (A:305-494) Laccase {Rigidoporus lignosus [TaxId:
219653]}
Length = 190
Score = 51.8 bits (123), Expect = 9e-10
Identities = 21/71 (29%), Positives = 29/71 (40%), Gaps = 2/71 (2%)
Query: 39 RPIVKDTVGNLPSGYTVV-RVHFNNPGMWYFHCHFVMHTDTGMTLVFQVGDRKQFVRAPP 97
P+ +D V G V R +NPG W+ HCH H + G+ +VF A
Sbjct: 116 NPVRRDVVSIGGGGDNVTFRFVTDNPGPWFLHCHIDWHLEAGLAVVFAEDI-PNIPIANA 174
Query: 98 HFPQCDNFQPA 108
P D+ P
Sbjct: 175 ISPAWDDLCPK 185
>d1kcwa2 b.6.1.3 (A:193-338) Ceruloplasmin {Human (Homo sapiens)
[TaxId: 9606]}
Length = 146
Score = 51.0 bits (121), Expect = 9e-10
Identities = 13/52 (25%), Positives = 20/52 (38%)
Query: 37 QPRPIVKDTVGNLPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVFQVGD 88
+ DT+ P+ + NPG W C + H G+ FQV +
Sbjct: 94 TNKNYRIDTINLFPATLFDAYMVAQNPGEWMLSCQNLNHLKAGLQAFFQVQE 145
>d2j5wa5 b.6.1.3 (A:892-1040) Ceruloplasmin {Human (Homo sapiens)
[TaxId: 9606]}
Length = 149
Score = 50.9 bits (121), Expect = 1e-09
Identities = 13/57 (22%), Positives = 18/57 (31%)
Query: 32 RLRTTQPRPIVKDTVGNLPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVFQVGD 88
+ D P Y + + PG+W HCH H GM + V
Sbjct: 92 SFQYKHRGVYSSDVFDIFPGTYQTLEMFPRTPGIWLLHCHVTDHIHAGMETTYTVLQ 148
>d1kv7a3 b.6.1.3 (A:336-516) multi-copper oxidase CueO {Escherichia
coli [TaxId: 562]}
Length = 181
Score = 48.9 bits (116), Expect = 8e-09
Identities = 17/51 (33%), Positives = 21/51 (41%), Gaps = 3/51 (5%)
Query: 39 RPIVKDTVGNLPSGYTVV---RVHFNNPGMWYFHCHFVMHTDTGMTLVFQV 86
R KDTV + V+ + HCH + H DTGM L F V
Sbjct: 131 RAGWKDTVKVEGNVSEVLVKFNHDAPKEHAYMAHCHLLEHEDTGMMLGFTV 181
>d2j5wa2 b.6.1.3 (A:555-699) Ceruloplasmin {Human (Homo sapiens)
[TaxId: 9606]}
Length = 145
Score = 46.3 bits (109), Expect = 4e-08
Identities = 11/52 (21%), Positives = 17/52 (32%)
Query: 35 TTQPRPIVKDTVGNLPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVFQV 86
T R +DT P + + + G + C H GM + V
Sbjct: 91 TYLWRGERRDTANLFPQTSLTLHMWPDTEGTFNVECLTTDHYTGGMKQKYTV 142
>d1sdda2 b.6.1.3 (A:181-296) Coagulation factor V {Cow (Bos taurus)
[TaxId: 9913]}
Length = 116
Score = 42.8 bits (100), Expect = 7e-07
Identities = 6/46 (13%), Positives = 12/46 (26%)
Query: 35 TTQPRPIVKDTVGNLPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGM 80
+ + + + T + + G W H GM
Sbjct: 67 VLEQNHHKISAITLVSATSTTANMTVSPEGRWTIASLIPRHFQAGM 112
>d1qhqa_ b.6.1.1 (A:) Auracyanin {Chloroflexus aurantiacus [TaxId:
1108]}
Length = 139
Score = 38.3 bits (88), Expect = 4e-05
Identities = 10/46 (21%), Positives = 13/46 (28%)
Query: 41 IVKDTVGNLPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVFQV 86
+ T V PG + + C F H GM V
Sbjct: 92 ALAWTAMLNAGESGSVTFRTPAPGTYLYICTFPGHYLAGMKGTLTV 137
>d2bw4a2 b.6.1.3 (A:166-338) Nitrite reductase, NIR {Alcaligenes
xylosoxidans [TaxId: 85698]}
Length = 173
Score = 34.9 bits (80), Expect = 0.001
Identities = 8/44 (18%), Positives = 16/44 (36%), Gaps = 1/44 (2%)
Query: 44 DTVGNLPSGYTVVRVHFNNPGMWYFHCHFVM-HTDTGMTLVFQV 86
+T F PG++ + H ++ + G F+V
Sbjct: 114 ETWLIPGGTAGAAFYTFRQPGVYAYVNHNLIEAFELGAAGHFKV 157
>d1e30a_ b.6.1.1 (A:) Rusticyanin {Thiobacillus ferrooxidans [TaxId:
920]}
Length = 153
Score = 32.9 bits (74), Expect = 0.004
Identities = 6/42 (14%), Positives = 11/42 (26%), Gaps = 1/42 (2%)
Query: 40 PIVKDTVGNLPSGYTVVRVHF-NNPGMWYFHCHFVMHTDTGM 80
+ + + G +Y+ C H TG
Sbjct: 105 AGTGFSPVPKDGKFGYTNFTWHPTAGTYYYVCQIPGHAATGQ 146
>d1kbva2 b.6.1.3 (A:164-314) Nitrite reductase, NIR {Neisseria
gonorrhoeae, AniA [TaxId: 485]}
Length = 151
Score = 32.8 bits (74), Expect = 0.005
Identities = 7/44 (15%), Positives = 14/44 (31%), Gaps = 1/44 (2%)
Query: 44 DTVGNLPSGYTVVRVHFNNPGMWYFHCHFVMH-TDTGMTLVFQV 86
+ G +V + PG + H + + G +V
Sbjct: 99 QSTIVPAGGSAIVEFKVDIPGNYTLVDHSIFRAFNKGALGQLKV 142
>d2q9oa1 b.6.1.3 (A:1-162) Laccase {Melanocarpus albomyces [TaxId:
204285]}
Length = 162
Score = 31.6 bits (71), Expect = 0.011
Identities = 8/41 (19%), Positives = 12/41 (29%)
Query: 50 PSGYTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVFQVGDRK 90
G R G ++H HF G+ Q+
Sbjct: 119 KGGQRTYRWRARQYGTSWYHSHFSAQYGNGVVGTIQINGPA 159
>d1kbva1 b.6.1.3 (A:13-163) Nitrite reductase, NIR {Neisseria
gonorrhoeae, AniA [TaxId: 485]}
Length = 151
Score = 31.6 bits (71), Expect = 0.012
Identities = 10/44 (22%), Positives = 17/44 (38%), Gaps = 3/44 (6%)
Query: 50 PSGYTVVRVHFNNPGMWYFHCHFV---MHTDTGMTLVFQVGDRK 90
P + PG++ +HC MH GM + V ++
Sbjct: 103 PGRTSTFSFKALQPGLYIYHCAVAPVGMHIANGMYGLILVEPKE 146
>d1jera_ b.6.1.1 (A:) Stellacyanin {Cucumber (Cucumis sativus)
[TaxId: 3659]}
Length = 110
Score = 28.4 bits (63), Expect = 0.10
Identities = 10/36 (27%), Positives = 12/36 (33%)
Query: 51 SGYTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVFQV 86
+ V + GM YF C H G L V
Sbjct: 71 ERTSPVIERLDELGMHYFVCTVGTHCSNGQKLSINV 106
>d1aoza1 b.6.1.3 (A:1-129) Ascorbate oxidase {Zucchini (Cucurbita
pepo var. medullosa) [TaxId: 3663]}
Length = 129
Score = 28.5 bits (63), Expect = 0.12
Identities = 9/41 (21%), Positives = 15/41 (36%)
Query: 50 PSGYTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVFQVGDRK 90
P +NPG +++H H M G+ V +
Sbjct: 85 PGETFFYNFTVDNPGTFFYHGHLGMQRSAGLYGSLIVDPPQ 125
>d1kdja_ b.6.1.1 (A:) Plastocyanin {Fern (Adiantum capillus-veneris)
[TaxId: 13818]}
Length = 102
Score = 27.5 bits (60), Expect = 0.20
Identities = 7/29 (24%), Positives = 10/29 (34%), Gaps = 2/29 (6%)
Query: 58 VHFNNPGMWYFHCHFVMHTDTGMTLVFQV 86
+ PG + F+C H M V
Sbjct: 75 AKVSTPGTYTFYCTP--HKSANMKGTLTV 101
>d1oe1a2 b.6.1.3 (A:160-336) Nitrite reductase, NIR {Alcaligenes
xylosoxidans [TaxId: 85698]}
Length = 177
Score = 27.9 bits (62), Expect = 0.22
Identities = 6/33 (18%), Positives = 12/33 (36%), Gaps = 1/33 (3%)
Query: 55 VVRVHFNNPGMWYFHCH-FVMHTDTGMTLVFQV 86
F PG++ + H + + G +V
Sbjct: 125 AALYTFKQPGVYAYLNHNLIEAFELGAAGHIKV 157
>d1oe2a1 b.6.1.3 (A:1-159) Nitrite reductase, NIR {Alcaligenes
xylosoxidans [TaxId: 85698]}
Length = 159
Score = 27.4 bits (60), Expect = 0.34
Identities = 10/64 (15%), Positives = 16/64 (25%), Gaps = 4/64 (6%)
Query: 30 GPRLRTTQPRPIVKDTVGNLPSGYTVVRVHFNNPGMWYFHCH----FVMHTDTGMTLVFQ 85
P +R + G + +HC H +GM+
Sbjct: 90 NVEFHGATGALGGAKLTNVNPGEQATLRFKADRSGTFVYHCAPEGMVPWHVVSGMSGTLM 149
Query: 86 VGDR 89
V R
Sbjct: 150 VLPR 153
>d1plca_ b.6.1.1 (A:) Plastocyanin {Poplar (Populus nigra),
variant italica [TaxId: 3691]}
Length = 99
Score = 27.0 bits (59), Expect = 0.36
Identities = 9/29 (31%), Positives = 12/29 (41%), Gaps = 2/29 (6%)
Query: 58 VHFNNPGMWYFHCHFVMHTDTGMTLVFQV 86
V +N G + F+C H GM V
Sbjct: 72 VALSNKGEYSFYCSP--HQGAGMVGKVTV 98
>d1ugpa_ d.149.1.1 (A:) Cobalt-containing nitrile hydratase
{Pseudonocardia thermophila [TaxId: 1848]}
Length = 203
Score = 27.4 bits (61), Expect = 0.41
Identities = 7/34 (20%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Query: 36 TQPRPIVKDTVG-NLPSGYTVVRVHFNNPGMWYF 68
+PR ++K+ G +P ++V ++ M +
Sbjct: 136 REPRQLLKEEFGFEVPPS-KEIKVWDSSSEMRFV 168
>d1bypa_ b.6.1.1 (A:) Plastocyanin {White campion (Silene
pratensis) [TaxId: 52853]}
Length = 99
Score = 26.6 bits (58), Expect = 0.42
Identities = 9/38 (23%), Positives = 12/38 (31%), Gaps = 2/38 (5%)
Query: 49 LPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVFQV 86
L + V G + F+C H GM V
Sbjct: 63 LNAPGEEYSVTLTEKGTYKFYCAP--HAGAGMVGKVTV 98
>d1gyca1 b.6.1.3 (A:1-130) Laccase {Trametes versicolor, laccase 2
[TaxId: 5325]}
Length = 130
Score = 26.9 bits (59), Expect = 0.46
Identities = 8/30 (26%), Positives = 13/30 (43%)
Query: 61 NNPGMWYFHCHFVMHTDTGMTLVFQVGDRK 90
+ G +++H H G+ F V D K
Sbjct: 101 DQAGTFWYHSHLSTQYCDGLRGPFVVYDPK 130
>d1ws8a_ b.6.1.1 (A:) Mavicyanin {Zucchini (Cucurbita pepo) [TaxId:
3663]}
Length = 104
Score = 26.5 bits (58), Expect = 0.55
Identities = 11/49 (22%), Positives = 15/49 (30%), Gaps = 7/49 (14%)
Query: 38 PRPIVKDTVGNLPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVFQV 86
P T G + PG +YF C H G + +V
Sbjct: 61 SSPAASYTSGA-------DSIPLKRPGTFYFLCGIPGHCQLGQKVEIKV 102
>d1vrba1 b.82.2.11 (A:8-326) Putative asparaginyl hydroxylase YxbC
{Bacillus subtilis [TaxId: 1423]}
Length = 319
Score = 27.2 bits (59), Expect = 0.57
Identities = 12/106 (11%), Positives = 24/106 (22%), Gaps = 5/106 (4%)
Query: 14 DKGLFLSQLIRQLDQEGPRLRTTQPRPIVKDT-----VGNLPSGYTVVRVHFNNPGMWYF 68
D+ L + ++G L +
Sbjct: 72 DRFLVSPAEALEWYEKGAALEFDFTDLFIPQVRRWIEKLKAELRLPAGTSSKAIVYAAKN 131
Query: 69 HCHFVMHTDTGMTLVFQVGDRKQFVRAPPHFPQCDNFQPAVTKQDW 114
F H D L+FQ+ K + A +++ +
Sbjct: 132 GGGFKAHFDAYTNLIFQIQGEKTWKLAKNENVSNPMQHYDLSEAPY 177
>d1f56a_ b.6.1.1 (A:) Plantacyanin {Spinach (Spinacia oleracea)
[TaxId: 3562]}
Length = 91
Score = 25.9 bits (57), Expect = 0.63
Identities = 10/45 (22%), Positives = 13/45 (28%), Gaps = 3/45 (6%)
Query: 42 VKDTVGNLPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVFQV 86
SG ++ G YF C F H GM +
Sbjct: 49 APRGARTYSSGQDRIK---LTRGQNYFICSFPGHCGGGMKIAINA 90
>d2cj3a1 b.6.1.1 (A:1-105) Plastocyanin {Anabaena variabilis [TaxId:
1172]}
Length = 105
Score = 26.4 bits (57), Expect = 0.65
Identities = 7/34 (20%), Positives = 10/34 (29%), Gaps = 2/34 (5%)
Query: 53 YTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVFQV 86
+ G + F+C H GM V
Sbjct: 72 TSTTFPADAPAGEYTFYC--EPHRGAGMVGKITV 103
>d1s21a_ d.166.1.4 (A:) AvrPphF ORF2, a type III effector
{Pseudomonas syringae pv. phaseolicola [TaxId: 319]}
Length = 176
Score = 26.1 bits (57), Expect = 1.1
Identities = 8/35 (22%), Positives = 14/35 (40%)
Query: 26 LDQEGPRLRTTQPRPIVKDTVGNLPSGYTVVRVHF 60
L+ E RTTQ + P+ ++ +H
Sbjct: 36 LNSETSVYRTTQREYVRNGYATGNPNSGAIIALHE 70
>d1hfua1 b.6.1.3 (A:1-131) Laccase {Inky cap fungus (Coprinus
cinereus) [TaxId: 5346]}
Length = 131
Score = 25.0 bits (54), Expect = 2.0
Identities = 6/30 (20%), Positives = 12/30 (40%)
Query: 61 NNPGMWYFHCHFVMHTDTGMTLVFQVGDRK 90
+ G +++H HF G+ + D
Sbjct: 101 GHAGTFWYHSHFGTQYCDGLRGPMVIYDDN 130
>d1v10a1 b.6.1.3 (A:1-136) Laccase {Rigidoporus lignosus [TaxId:
219653]}
Length = 136
Score = 25.0 bits (54), Expect = 2.5
Identities = 7/30 (23%), Positives = 11/30 (36%)
Query: 61 NNPGMWYFHCHFVMHTDTGMTLVFQVGDRK 90
G +++H H G+ F V D
Sbjct: 101 GQAGTYWYHSHLSTQYCDGLRGAFVVYDPN 130
>d2j5wa1 b.6.1.3 (A:1-192) Ceruloplasmin {Human (Homo sapiens)
[TaxId: 9606]}
Length = 192
Score = 25.1 bits (54), Expect = 2.8
Identities = 5/22 (22%), Positives = 7/22 (31%)
Query: 62 NPGMWYFHCHFVMHTDTGMTLV 83
N +H H D L+
Sbjct: 154 NCVTRIYHSHIDAPKDIASGLI 175
>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 184
Score = 24.7 bits (52), Expect = 3.6
Identities = 13/112 (11%), Positives = 30/112 (26%), Gaps = 1/112 (0%)
Query: 11 PNVDKGLFLSQLIRQLDQEGPRLRTTQPRPIVKDTVGNLPSGYTVVRVHFNNPGMWYFHC 70
NV K + +L + + G R T+ ++ + + +
Sbjct: 9 SNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEWKNHKIIDMPGFGFMMGLPKEVQERIK 68
Query: 71 HFVMHTDTGMTLVFQVGDRKQFVRAPPHFPQCDNFQPAVTKQDWAAAKNLEK 122
++H V +A P + + D + L +
Sbjct: 69 DEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKR-GEIPIDVEFYQFLRE 119
>d1v29a_ d.149.1.1 (A:) Cobalt-containing nitrile hydratase
{Bacillus smithii [TaxId: 1479]}
Length = 203
Score = 24.7 bits (54), Expect = 3.8
Identities = 6/33 (18%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 36 TQPRPIVKDTVGNLPSGYTVVRVHFNNPGMWYF 68
+PR ++++ +LP +RV ++ + +
Sbjct: 135 KEPRKVLQEFGLDLPDS-VEIRVWDSSSEVRFM 166
>d1mzya1 b.6.1.3 (A:41-193) Nitrite reductase, NIR {Rhodobacter
sphaeroides [TaxId: 1063]}
Length = 153
Score = 24.3 bits (52), Expect = 3.9
Identities = 10/42 (23%), Positives = 14/42 (33%), Gaps = 5/42 (11%)
Query: 50 PSGYTVVRVHFNNPGMWYFHCHFV-----MHTDTGMTLVFQV 86
P V+R G + +HC H +GM V
Sbjct: 107 PGEKVVLRFKATRAGAFVYHCAPGGPMIPWHVVSGMAGCIMV 148
>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Escherichia coli [TaxId:
562]}
Length = 170
Score = 24.6 bits (52), Expect = 3.9
Identities = 11/99 (11%), Positives = 22/99 (22%)
Query: 10 PPNVDKGLFLSQLIRQLDQEGPRLRTTQPRPIVKDTVGNLPSGYTVVRVHFNNPGMWYFH 69
K L +LI L G R + D Y + + +
Sbjct: 10 WSGTGKTTLLKKLIPALCARGIRPGLIKHTHHDMDVDKPGKDSYELRKAGAAQTIVASQQ 69
Query: 70 CHFVMHTDTGMTLVFQVGDRKQFVRAPPHFPQCDNFQPA 108
+M + + + + F+
Sbjct: 70 RWALMTETPDEEELDLQFLASRMDTSKLDLILVEGFKHE 108
>d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14
{Human (Homo sapiens) [TaxId: 9606]}
Length = 114
Score = 23.8 bits (51), Expect = 5.4
Identities = 13/56 (23%), Positives = 25/56 (44%)
Query: 8 KIPPNVDKGLFLSQLIRQLDQEGPRLRTTQPRPIVKDTVGNLPSGYTVVRVHFNNP 63
++PP V++ L++ L ++ E + PI + VGN P V + +
Sbjct: 1 RLPPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDI 56
>d1k42a_ b.18.1.14 (A:) Carbohydrate binding module from a
thermostable xylanase {Rhodothermus marinus [TaxId:
29549]}
Length = 168
Score = 24.0 bits (51), Expect = 6.3
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 81 TLVFQVGDRKQFVRAPPHF 99
T F V D++ +RAP HF
Sbjct: 129 TFEFTVSDQETVIRAPIHF 147
>d2bw4a1 b.6.1.3 (A:8-164) Nitrite reductase, NIR {Alcaligenes
xylosoxidans [TaxId: 85698]}
Length = 157
Score = 23.9 bits (51), Expect = 6.3
Identities = 12/44 (27%), Positives = 17/44 (38%), Gaps = 4/44 (9%)
Query: 50 PSGYTVVRVHFNNPGMWYFHCH----FVMHTDTGMTLVFQVGDR 89
P T +R PG++ +HC H +GM V R
Sbjct: 109 PGEETTLRFKATKPGVFVYHCAPEGMVPWHVTSGMNGAIMVLPR 152
>d2cbpa_ b.6.1.1 (A:) Plantacyanin {Cucumber (Cucumis sativus)
[TaxId: 3659]}
Length = 96
Score = 23.3 bits (50), Expect = 7.0
Identities = 10/36 (27%), Positives = 16/36 (44%), Gaps = 3/36 (8%)
Query: 51 SGYTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVFQV 86
SG +++ G YF C+F H +GM +
Sbjct: 63 SGRDQIKL---PKGQSYFICNFPGHCQSGMKIAVNA 95
>d1ibya_ b.6.1.4 (A:) Red copper protein nitrosocyanin {Nitrosomonas
europaea [TaxId: 915]}
Length = 112
Score = 23.2 bits (49), Expect = 8.5
Identities = 3/39 (7%), Positives = 8/39 (20%), Gaps = 1/39 (2%)
Query: 50 PSGYTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVFQVGD 88
+ + G + C + V +
Sbjct: 75 AGETKTISFTADKAGAFTIWCQLHPKNI-HLPGTLNVVE 112
>d2qdya1 d.149.1.1 (A:10-206) Iron-containing nitrile hydratase
{Rhodococcus erythropolis [TaxId: 1833]}
Length = 197
Score = 23.2 bits (50), Expect = 9.0
Identities = 6/33 (18%), Positives = 13/33 (39%), Gaps = 1/33 (3%)
Query: 36 TQPRPIVKDTVGNLPSGYTVVRVHFNNPGMWYF 68
+PR ++ + + S +RV+ Y
Sbjct: 130 REPRKVLSEMGTEIASD-IEIRVYDTTAETRYM 161
>d1vlra1 d.13.1.3 (A:146-337) mRNA decapping enzyme DcpS C-terminal
domain {Mouse (Mus musculus) [TaxId: 10090]}
Length = 192
Score = 23.2 bits (50), Expect = 9.3
Identities = 6/36 (16%), Positives = 12/36 (33%), Gaps = 4/36 (11%)
Query: 39 RPIVKDTVGNLPSGYTVVRVHFN-NPGMWYFHCHFV 73
+ + RV+ + P ++ H HF
Sbjct: 103 QEAILKRYQVTGDRL---RVYLHYLPSYYHLHVHFT 135
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.324 0.139 0.452
Gapped
Lambda K H
0.267 0.0600 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 489,984
Number of extensions: 21239
Number of successful extensions: 125
Number of sequences better than 10.0: 1
Number of HSP's gapped: 124
Number of HSP's successfully gapped: 57
Length of query: 123
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 48
Effective length of database: 1,377,846
Effective search space: 66136608
Effective search space used: 66136608
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 47 (22.2 bits)