BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy9699
         (123 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1QDL|A Chain A, The Crystal Structure Of Anthranilate Synthase From
          Sulfolobus Solfataricus
          Length = 422

 Score = 26.9 bits (58), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 6/58 (10%)

Query: 21 CVTTYFLMMGILTLYTTYKEKGIFAVAKKDHIVWEASSYLKKYDDMYNLVLQY-KDTK 77
          C+   F + G+L      + K  ++V     I W  + YLK +DD  N++  Y KD K
Sbjct: 19 CIERDFKVAGLLESIGGPQYKARYSV-----IAWSTNGYLKIHDDPVNILNGYLKDLK 71


>pdb|2E4G|A Chain A, Rebh With Bound L-Trp
 pdb|2E4G|B Chain B, Rebh With Bound L-Trp
 pdb|2OAL|A Chain A, Rebh With Bound Fad
 pdb|2OAL|B Chain B, Rebh With Bound Fad
 pdb|2OAM|A Chain A, Apo Rebh From Lechevalieria Aerocolonigenes
 pdb|2OAM|B Chain B, Apo Rebh From Lechevalieria Aerocolonigenes
 pdb|2O9Z|A Chain A, Crystal Structure Of Rebh, A Fad-Dependent Halogenase From
           Lechevalieria Aerocolonigenes, The Apo Form
 pdb|2O9Z|B Chain B, Crystal Structure Of Rebh, A Fad-Dependent Halogenase From
           Lechevalieria Aerocolonigenes, The Apo Form
 pdb|2OA1|B Chain B, Crystal Structure Of Rebh, A Fad-Dependent Halogenase From
           Lechevalieria Aerocolonigenes, The L-Tryptophan With Fad
           Complex
 pdb|2OA1|A Chain A, Crystal Structure Of Rebh, A Fad-Dependent Halogenase From
           Lechevalieria Aerocolonigenes, The L-Tryptophan With Fad
           Complex
          Length = 550

 Score = 26.2 bits (56), Expect = 4.7,   Method: Composition-based stats.
 Identities = 10/35 (28%), Positives = 17/35 (48%)

Query: 63  YDDMYNLVLQYKDTKTGVTRSEQFNKSVANYFDET 97
           Y  +Y LV  + D       + +FN+ +   FD+T
Sbjct: 385 YAALYQLVKHFPDKSLNPVLTARFNREIETMFDDT 419


>pdb|2APG|A Chain A, The Structure Of Tryptophan 7-Halogenase (Prna)suggests A
           Mechanism For Regioselective Chlorination
 pdb|2AQJ|A Chain A, The Structure Of Tryptophan 7-Halogenase (Prna) Suggests A
           Mechanism For Regioselective Chlorination
 pdb|2AR8|A Chain A, The Structure Of Tryptophan 7-Halogenase (Prna)suggests A
           Mechanism For Regioselective Chlorination
 pdb|2ARD|A Chain A, The Structure Of Tryptophan 7-Halogenase (Prna) Suggests A
           Mechanism For Regioselective Chlorination
          Length = 538

 Score = 25.8 bits (55), Expect = 5.9,   Method: Composition-based stats.
 Identities = 11/34 (32%), Positives = 17/34 (50%)

Query: 63  YDDMYNLVLQYKDTKTGVTRSEQFNKSVANYFDE 96
           Y  +Y LV  + DT      S+ FN  + + FD+
Sbjct: 354 YAALYQLVKHFPDTSFDPRLSDAFNAEIVHMFDD 387


>pdb|2JKC|A Chain A, Crystal Structure Of E346d Of Tryptophan 7-Halogenase
           (Prna)
          Length = 538

 Score = 25.8 bits (55), Expect = 5.9,   Method: Composition-based stats.
 Identities = 11/34 (32%), Positives = 17/34 (50%)

Query: 63  YDDMYNLVLQYKDTKTGVTRSEQFNKSVANYFDE 96
           Y  +Y LV  + DT      S+ FN  + + FD+
Sbjct: 354 YAALYQLVKHFPDTSFDPRLSDAFNAEIVHMFDD 387


>pdb|1KSF|X Chain X, Crystal Structure Of Clpa, An Hsp100 Chaperone And
           Regulator Of Clpap Protease: Structural Basis Of
           Differences In Function Of The Two Aaa+ Atpase Domains
 pdb|1R6B|X Chain X, High Resolution Crystal Structure Of Clpa
          Length = 758

 Score = 25.0 bits (53), Expect = 9.7,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 2/68 (2%)

Query: 13  RFEPVLIMCVTTYFLMMGILTLYTTYKEKGIF--AVAKKDHIVWEASSYLKKYDDMYNLV 70
           RF+    M   T   ++G    Y  + + G+   AV K  H V       K + D++N++
Sbjct: 518 RFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNIL 577

Query: 71  LQYKDTKT 78
           LQ  D  T
Sbjct: 578 LQVMDNGT 585


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.136    0.403 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,689,282
Number of Sequences: 62578
Number of extensions: 139270
Number of successful extensions: 270
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 264
Number of HSP's gapped (non-prelim): 16
length of query: 123
length of database: 14,973,337
effective HSP length: 85
effective length of query: 38
effective length of database: 9,654,207
effective search space: 366859866
effective search space used: 366859866
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)