BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9699
(123 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5M8Y1|SPCS2_XENTR Probable signal peptidase complex subunit 2 OS=Xenopus tropicalis
GN=spcs2 PE=2 SV=1
Length = 201
Score = 113 bits (282), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 59/119 (49%), Positives = 78/119 (65%), Gaps = 7/119 (5%)
Query: 10 PVKRFEPVLIMCVTTYFLMMGILTLYTTYKEKGIFAVA-KKDHI------VWEASSYLKK 62
P +PVL +CV +YFLMMGILT+YT+YKEK IF VA +KD +W SS LK+
Sbjct: 81 PFPESKPVLAICVISYFLMMGILTIYTSYKEKSIFLVAHRKDPAGMDPDDIWHLSSSLKR 140
Query: 63 YDDMYNLVLQYKDTKTGVTRSEQFNKSVANYFDETGLLLPDLVENDVSRLHNSILAEKK 121
+DD Y L + Y KT R +F KS+A +FD+ G L+ DL E +VS+LH+S+ EKK
Sbjct: 141 FDDKYTLKVTYISGKTKAQRDAEFTKSIARFFDDNGTLVMDLFEPEVSKLHDSLAMEKK 199
>sp|Q9VYY2|SPCS2_DROME Signal peptidase complex subunit 2 OS=Drosophila melanogaster
GN=Spase25 PE=2 SV=1
Length = 199
Score = 112 bits (279), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 56/120 (46%), Positives = 81/120 (67%), Gaps = 5/120 (4%)
Query: 7 NFT-PVKRFEPVLIMCVTTYFLMMGILTLYTTYKEKGIFAVA----KKDHIVWEASSYLK 61
+FT P PVL+ V YF ++GILTL+++++EKG FAVA K+ +WEASS ++
Sbjct: 72 DFTHPFPESRPVLLFSVLAYFALLGILTLHSSFREKGTFAVALQKDKERERLWEASSDMR 131
Query: 62 KYDDMYNLVLQYKDTKTGVTRSEQFNKSVANYFDETGLLLPDLVENDVSRLHNSILAEKK 121
KYDD Y L L +DTK G R + NKS A + D+ G++L +LV N+V+RL N++ A+KK
Sbjct: 132 KYDDKYLLTLSVRDTKNGKRREQSSNKSCAAFIDQNGIVLDNLVANEVNRLFNALAADKK 191
>sp|Q28250|SPCS2_CANFA Signal peptidase complex subunit 2 OS=Canis familiaris GN=SPCS2
PE=1 SV=1
Length = 226
Score = 110 bits (274), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 55/119 (46%), Positives = 78/119 (65%), Gaps = 7/119 (5%)
Query: 10 PVKRFEPVLIMCVTTYFLMMGILTLYTTYKEKGIFAVA-KKDHI------VWEASSYLKK 62
P +PVL +CV +YF+MMGILT+YT+YKEK IF VA +KD +W+ SS LK+
Sbjct: 106 PFPESKPVLALCVISYFVMMGILTIYTSYKEKSIFLVAHRKDPTGMDPDDIWQLSSSLKR 165
Query: 63 YDDMYNLVLQYKDTKTGVTRSEQFNKSVANYFDETGLLLPDLVENDVSRLHNSILAEKK 121
+DD Y L L + +T R +F KS+A +FD +G L+ D E ++SRLH+S+ E+K
Sbjct: 166 FDDKYTLKLTFISGRTKQQREAEFTKSIAKFFDHSGTLVMDAYEPEISRLHDSLATERK 224
>sp|Q9CYN2|SPCS2_MOUSE Signal peptidase complex subunit 2 OS=Mus musculus GN=Spcs2 PE=2
SV=1
Length = 226
Score = 110 bits (274), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 55/119 (46%), Positives = 78/119 (65%), Gaps = 7/119 (5%)
Query: 10 PVKRFEPVLIMCVTTYFLMMGILTLYTTYKEKGIFAVA-KKDHI------VWEASSYLKK 62
P +PVL +CV +YF+MMGILT+YT+YKEK IF VA +KD +W+ SS LK+
Sbjct: 106 PFPESKPVLALCVISYFVMMGILTIYTSYKEKSIFLVAHRKDPTGMDPDDIWQLSSSLKR 165
Query: 63 YDDMYNLVLQYKDTKTGVTRSEQFNKSVANYFDETGLLLPDLVENDVSRLHNSILAEKK 121
+DD Y L L + +T R +F KS+A +FD +G L+ D E ++SRLH+S+ E+K
Sbjct: 166 FDDKYTLKLTFISGRTKQQREAEFTKSIAKFFDHSGTLVMDAYEPEISRLHDSLATERK 224
>sp|Q4R512|SPCS2_MACFA Signal peptidase complex subunit 2 OS=Macaca fascicularis GN=SPCS2
PE=2 SV=1
Length = 226
Score = 109 bits (273), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 55/119 (46%), Positives = 78/119 (65%), Gaps = 7/119 (5%)
Query: 10 PVKRFEPVLIMCVTTYFLMMGILTLYTTYKEKGIFAVA-KKDHI------VWEASSYLKK 62
P +PVL +CV +YF+MMGILT+YT+YKEK IF VA +KD +W+ SS LK+
Sbjct: 106 PFPESKPVLALCVISYFVMMGILTIYTSYKEKSIFLVAHRKDPTGMDPDDIWQLSSSLKR 165
Query: 63 YDDMYNLVLQYKDTKTGVTRSEQFNKSVANYFDETGLLLPDLVENDVSRLHNSILAEKK 121
+DD Y L L + +T R +F KS+A +FD +G L+ D E ++SRLH+S+ E+K
Sbjct: 166 FDDKYTLKLTFISGRTKQQREAEFTKSIAKFFDHSGTLVMDAYEPEISRLHDSLAVERK 224
>sp|Q5RAY6|SPCS2_PONAB Signal peptidase complex subunit 2 OS=Pongo abelii GN=SPCS2 PE=2
SV=1
Length = 226
Score = 109 bits (272), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 55/119 (46%), Positives = 78/119 (65%), Gaps = 7/119 (5%)
Query: 10 PVKRFEPVLIMCVTTYFLMMGILTLYTTYKEKGIFAVA-KKDHI------VWEASSYLKK 62
P +PVL +CV +YF+MMGILT+YT+YKEK IF VA +KD +W+ SS LK+
Sbjct: 106 PFPESKPVLALCVISYFVMMGILTIYTSYKEKSIFLVAHRKDPTGMDPDDIWQLSSSLKR 165
Query: 63 YDDMYNLVLQYKDTKTGVTRSEQFNKSVANYFDETGLLLPDLVENDVSRLHNSILAEKK 121
+DD Y L L + +T R +F KS+A +FD +G L+ D E ++SRLH+S+ E+K
Sbjct: 166 FDDKYTLKLTFISGRTKQQREAEFTKSIAKFFDHSGTLVMDAYEPEISRLHDSLAIERK 224
>sp|Q15005|SPCS2_HUMAN Signal peptidase complex subunit 2 OS=Homo sapiens GN=SPCS2 PE=1
SV=3
Length = 226
Score = 109 bits (272), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 55/119 (46%), Positives = 78/119 (65%), Gaps = 7/119 (5%)
Query: 10 PVKRFEPVLIMCVTTYFLMMGILTLYTTYKEKGIFAVA-KKDHI------VWEASSYLKK 62
P +PVL +CV +YF+MMGILT+YT+YKEK IF VA +KD +W+ SS LK+
Sbjct: 106 PFPESKPVLALCVISYFVMMGILTIYTSYKEKSIFLVAHRKDPTGMDPDDIWQLSSSLKR 165
Query: 63 YDDMYNLVLQYKDTKTGVTRSEQFNKSVANYFDETGLLLPDLVENDVSRLHNSILAEKK 121
+DD Y L L + +T R +F KS+A +FD +G L+ D E ++SRLH+S+ E+K
Sbjct: 166 FDDKYTLKLTFISGRTKQQREAEFTKSIAKFFDHSGTLVMDAYEPEISRLHDSLAIERK 224
>sp|Q5BJI9|SPCS2_DANRE Probable signal peptidase complex subunit 2 OS=Danio rerio GN=spcs2
PE=2 SV=1
Length = 201
Score = 108 bits (269), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 58/120 (48%), Positives = 76/120 (63%), Gaps = 9/120 (7%)
Query: 10 PVKRFEPVLIMCVTTYFLMMGILTLYTTYKEKGIFAVAKK--------DHIVWEASSYLK 61
P +PVL CV +YF+MMGILTLYT+YKEK IF VA + DH W SS LK
Sbjct: 81 PFPESKPVLACCVVSYFIMMGILTLYTSYKEKNIFLVAMQKDPAGMDPDH-SWCLSSSLK 139
Query: 62 KYDDMYNLVLQYKDTKTGVTRSEQFNKSVANYFDETGLLLPDLVENDVSRLHNSILAEKK 121
++DD Y L + + D KT +R +F KSV+ +FDE G L+ D E VS+LH+++ EKK
Sbjct: 140 RFDDQYTLRMSFTDGKTKQSRETEFTKSVSVFFDENGTLVMDQYEKYVSKLHDTLATEKK 199
>sp|Q9XWW1|SPCS2_CAEEL Probable signal peptidase complex subunit 2 OS=Caenorhabditis
elegans GN=Y37D8A.10 PE=1 SV=1
Length = 180
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 58/114 (50%), Gaps = 6/114 (5%)
Query: 8 FTPVKRFEPVLIMCVTTYFLMMGILTLYTTYKEKGIF----AVAKKDHIVWEASSYLKKY 63
+ P + + VL +C +YF+ MGIL +Y Y EK V K W SS +K +
Sbjct: 65 YEPFPKSKIVLAVCSVSYFICMGILQMYQWYVEKDCIYEATEVDGKQSRKWAWSSEIKAH 124
Query: 64 DDMYNLVLQYKDTKTGVTRSEQFNKSVANYFDETGLLLPDLVENDVSRLHNSIL 117
DD Y L ++K K G + + KS+ Y D G ++ LV+ +V L+N ++
Sbjct: 125 DDKYTLSAEFK--KEGRSGQGKITKSIGAYIDNDGEIIVPLVKKEVDDLYNRLI 176
>sp|Q615A2|SPCS2_CAEBR Probable signal peptidase complex subunit 2 OS=Caenorhabditis
briggsae GN=CBG15767 PE=3 SV=1
Length = 180
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 56/109 (51%), Gaps = 6/109 (5%)
Query: 8 FTPVKRFEPVLIMCVTTYFLMMGILTLYTTYKEKGIF----AVAKKDHIVWEASSYLKKY 63
+ P + + VL++C +YF+ MG+L L+ Y EK F V K W SS +K +
Sbjct: 65 YAPFPKSKIVLLVCSVSYFICMGVLQLFQWYVEKDCFYEANEVDGKQTRKWAWSSEIKAH 124
Query: 64 DDMYNLVLQYKDTKTGVTRSEQFNKSVANYFDETGLLLPDLVENDVSRL 112
DD Y L ++K K G + + KS+ Y D G ++ LV+ +V L
Sbjct: 125 DDKYVLSAEFK--KEGRSGQGKIIKSIGAYIDNDGEIMIPLVQREVDDL 171
>sp|Q55E35|SPCS2_DICDI Signal peptidase complex subunit 2 OS=Dictyostelium discoideum
GN=spcs2 PE=3 SV=2
Length = 183
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 51/102 (50%), Gaps = 5/102 (4%)
Query: 10 PVKRFEPVLIMCVTTYFLMMGILTLYTTYKEKGIFAVAKKDHIVWEASSYLKKYDDMYNL 69
P + +PVLI+CV Y ++ IL + +K A K + + ++ L+KYD Y +
Sbjct: 72 PFPKNKPVLILCVALYVVISLILYYINIFIQKDYILQASKSNDEIKVATVLQKYDPNYQV 131
Query: 70 VLQ-YKDTKTGVTRSEQFNKSVANYFDETGLLLPDLVENDVS 110
++ K++ V F+KS+ YFD G L ND+S
Sbjct: 132 KIENAKNSSINVP----FSKSIDLYFDTKGTFLESNFHNDLS 169
>sp|P58684|SPCS2_ARATH Probable signal peptidase complex subunit 2 OS=Arabidopsis thaliana
GN=At2g39960 PE=2 SV=1
Length = 192
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 50/112 (44%), Gaps = 6/112 (5%)
Query: 18 LIMCVTTYFLMMGILTL--YTTYKEKGIFAVAKKDHIVWEA---SSYLKKYDDMYNLVLQ 72
LI C+ Y ++ +L L YT K +F + SS L ++ D Y L +
Sbjct: 79 LIGCIALYVVLNAVLQLILYTKEKNAILFTYPPEGSFTSTGLVVSSKLPRFSDQYTLTID 138
Query: 73 YKDTKT-GVTRSEQFNKSVANYFDETGLLLPDLVENDVSRLHNSILAEKKKE 123
D K+ +S Q KSV +F + G+L+ L DV L + E+ K+
Sbjct: 139 SADPKSISAGKSVQLTKSVTQWFTKDGVLVEGLFWKDVEALIKNYAEEEPKK 190
>sp|Q98QG1|EFTU_MYCPU Elongation factor Tu OS=Mycoplasma pulmonis (strain UAB CTIP)
GN=tuf PE=3 SV=1
Length = 396
Score = 33.1 bits (74), Expect = 0.49, Method: Composition-based stats.
Identities = 31/105 (29%), Positives = 42/105 (40%), Gaps = 18/105 (17%)
Query: 9 TPVKRFEPVLIMCVTTYFLMMGILTLYTTYKEKGIFAVAKKDHIVWEASSYLKKYDDMYN 68
TPVK + ++ V F + G T+ T E+G + + IV
Sbjct: 203 TPVKELDKPFLLAVEDVFTITGRGTVATGKVERGQLNINSEVEIVG-------------- 248
Query: 69 LVLQYKDTKTGVTRSEQFNKSV--ANYFDETGLLLPDLVENDVSR 111
K KT VT E F K++ A D GLLL + NDV R
Sbjct: 249 --FTEKPKKTTVTGIEMFRKNLKEAQAGDNAGLLLRGVDRNDVER 291
>sp|B1VET1|EFTU_CORU7 Elongation factor Tu OS=Corynebacterium urealyticum (strain ATCC
43042 / DSM 7109) GN=tuf PE=3 SV=1
Length = 396
Score = 32.7 bits (73), Expect = 0.63, Method: Composition-based stats.
Identities = 31/104 (29%), Positives = 42/104 (40%), Gaps = 18/104 (17%)
Query: 10 PVKRFEPVLIMCVTTYFLMMGILTLYTTYKEKGIFAVAKKDHIVWEASSYLKKYDDMYNL 69
P + + +M V F + G T+ T E+G+ L D++ L
Sbjct: 204 PERETDKPFLMPVEDIFTITGRGTVVTGRVERGV----------------LNLNDEVEIL 247
Query: 70 VLQYKDTKTGVTRSEQFNK--SVANYFDETGLLLPDLVENDVSR 111
++ K TKT VT E FNK A D LLL L DV R
Sbjct: 248 GIREKSTKTTVTSIEMFNKLLDTAEAGDNAALLLRGLKREDVER 291
>sp|A7IAH7|RS4_METB6 30S ribosomal protein S4 OS=Methanoregula boonei (strain 6A8)
GN=rps4 PE=3 SV=1
Length = 185
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 24/51 (47%)
Query: 53 VWEASSYLKKYDDMYNLVLQYKDTKTGVTRSEQFNKSVANYFDETGLLLPD 103
VW+A S+L+KY +L + T T E + ++ GLL PD
Sbjct: 41 VWKAQSHLRKYRKAARELLALMSSATNQTVFEAKKSELISHMQRAGLLGPD 91
>sp|Q8FS84|EFTU_COREF Elongation factor Tu OS=Corynebacterium efficiens (strain DSM 44549
/ YS-314 / AJ 12310 / JCM 11189 / NBRC 100395) GN=tuf
PE=3 SV=1
Length = 396
Score = 30.8 bits (68), Expect = 2.8, Method: Composition-based stats.
Identities = 29/104 (27%), Positives = 43/104 (41%), Gaps = 18/104 (17%)
Query: 10 PVKRFEPVLIMCVTTYFLMMGILTLYTTYKEKGIFAVAKKDHIVWEASSYLKKYDDMYNL 69
PV+ + +M + F + G T+ T E+G V DD+ +
Sbjct: 204 PVRETDKPFLMPIEDIFTITGRGTVVTGRVERGTLNVN----------------DDVEII 247
Query: 70 VLQYKDTKTGVTRSEQFNKSV--ANYFDETGLLLPDLVENDVSR 111
++ K T+T VT E F K + A D GLLL + DV R
Sbjct: 248 GIKEKATQTTVTGIEMFRKLLDSAEAGDNCGLLLRGIKREDVER 291
>sp|Q97DQ1|AZOR2_CLOAB FMN-dependent NADH-azoreductase 2 OS=Clostridium acetobutylicum
(strain ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM
B-1787) GN=azoR2 PE=3 SV=1
Length = 200
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 36/96 (37%)
Query: 16 PVLIMCVTTYFLMMGILTLYTTYKEKGIFAVAKKDHIVWEASSYLKKYDDMYNLVLQYKD 75
P ++ Y + GI YT G+ K HIV Y + +MY + +Y
Sbjct: 97 PAILKAYIDYICVTGITFKYTEEGAVGLCQGKKAVHIVSRGGGYSEGPFEMYEMGDRYLR 156
Query: 76 TKTGVTRSEQFNKSVANYFDETGLLLPDLVENDVSR 111
T G F VA D G + ++ N + +
Sbjct: 157 TIFGFLGITDFTTIVAEKLDVVGEDVEGILRNTIEK 192
>sp|P29888|F11_VACCP Protein F11 OS=Vaccinia virus (strain L-IVP) GN=F7 PE=3 SV=1
Length = 337
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 21/28 (75%)
Query: 96 ETGLLLPDLVENDVSRLHNSILAEKKKE 123
ETG ++P++ ND +++ IL+EK+K+
Sbjct: 205 ETGFVIPEISSNDNAKIAARILSEKRKD 232
>sp|Q80HX7|F11_VACCW Protein F11 OS=Vaccinia virus (strain Western Reserve) GN=VACWR050
PE=3 SV=1
Length = 348
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 21/28 (75%)
Query: 96 ETGLLLPDLVENDVSRLHNSILAEKKKE 123
ETG ++P++ ND +++ IL+EK+K+
Sbjct: 209 ETGFVIPEISSNDNAKIAARILSEKRKD 236
>sp|P50377|EFTU_GRALE Elongation factor Tu, chloroplastic (Fragment) OS=Gracilaria
lemaneiformis GN=tufA PE=3 SV=1
Length = 235
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Query: 3 YLPRNFTPVKRFEPVLIMCVTTYFLMMGILTLYTTYKEKGIFAVAKKDHIVW 54
Y+P TPV+ E +M V F + G T+ T E+GI V IV
Sbjct: 120 YIP---TPVRDVEKTFLMAVEDVFSITGRGTVTTGRIERGIIKVGDTIEIVG 168
>sp|P33870|F11_VAR67 Protein F11 OS=Variola virus (isolate Human/India/Ind3/1967)
GN=C15L PE=3 SV=1
Length = 354
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 21/28 (75%)
Query: 96 ETGLLLPDLVENDVSRLHNSILAEKKKE 123
ETG ++P++ ND +++ IL+EK+K+
Sbjct: 209 ETGFVIPNISSNDNAKIAARILSEKRKD 236
>sp|Q8G5B7|EFTU_BIFLO Elongation factor Tu OS=Bifidobacterium longum (strain NCC 2705)
GN=tuf PE=3 SV=1
Length = 399
Score = 30.4 bits (67), Expect = 3.4, Method: Composition-based stats.
Identities = 32/111 (28%), Positives = 45/111 (40%), Gaps = 22/111 (19%)
Query: 3 YLPRNFTPVKRFEPVLIMCVTTYFLMMGILTLYTTYKEKGIFAVAKKDHIVWEASSYLKK 62
Y+P TPV + +M + F + G T+ T E+G AV IV +
Sbjct: 204 YIP---TPVHDLDKPFLMPIEDVFTISGRGTVVTGRVERGQLAVNTPVEIVGIRPT---- 256
Query: 63 YDDMYNLVLQYKDTKTGVTRSEQFNKSV--ANYFDETGLLLPDLVENDVSR 111
+T VT E F+K++ D TGLLL L +DV R
Sbjct: 257 -------------QQTTVTSIETFHKTMDACEAGDNTGLLLRGLGRDDVER 294
>sp|B3DT29|EFTU_BIFLD Elongation factor Tu OS=Bifidobacterium longum (strain DJO10A)
GN=tuf PE=3 SV=1
Length = 399
Score = 30.4 bits (67), Expect = 3.4, Method: Composition-based stats.
Identities = 32/111 (28%), Positives = 45/111 (40%), Gaps = 22/111 (19%)
Query: 3 YLPRNFTPVKRFEPVLIMCVTTYFLMMGILTLYTTYKEKGIFAVAKKDHIVWEASSYLKK 62
Y+P TPV + +M + F + G T+ T E+G AV IV +
Sbjct: 204 YIP---TPVHDLDKPFLMPIEDVFTISGRGTVVTGRVERGQLAVNTPVEIVGIRPT---- 256
Query: 63 YDDMYNLVLQYKDTKTGVTRSEQFNKSV--ANYFDETGLLLPDLVENDVSR 111
+T VT E F+K++ D TGLLL L +DV R
Sbjct: 257 -------------QQTTVTSIETFHKTMDACEAGDNTGLLLRGLGRDDVER 294
>sp|A0QS98|EFTU_MYCS2 Elongation factor Tu OS=Mycobacterium smegmatis (strain ATCC 700084
/ mc(2)155) GN=tuf PE=1 SV=1
Length = 396
Score = 30.4 bits (67), Expect = 3.5, Method: Composition-based stats.
Identities = 29/104 (27%), Positives = 43/104 (41%), Gaps = 18/104 (17%)
Query: 10 PVKRFEPVLIMCVTTYFLMMGILTLYTTYKEKGIFAVAKKDHIVWEASSYLKKYDDMYNL 69
PV+ + +M V F + G T+ T E+G+ V ++ IV
Sbjct: 204 PVRETDKPFLMPVEDVFTITGRGTVVTGRVERGVINVNEEVEIVG--------------- 248
Query: 70 VLQYKDTKTGVTRSEQFNKSV--ANYFDETGLLLPDLVENDVSR 111
++ + TKT VT E F K + D GLLL + DV R
Sbjct: 249 -IRPETTKTTVTGVEMFRKLLDQGQAGDNVGLLLRGIKREDVER 291
>sp|P21052|F11_VACCC Protein F11 OS=Vaccinia virus (strain Copenhagen) GN=F11L PE=3 SV=1
Length = 354
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 21/28 (75%)
Query: 96 ETGLLLPDLVENDVSRLHNSILAEKKKE 123
ETG ++P++ ND +++ IL+EK+K+
Sbjct: 209 ETGFVIPEISSNDNAKIAARILSEKRKD 236
>sp|Q73SD1|EFTU_MYCPA Elongation factor Tu OS=Mycobacterium paratuberculosis (strain ATCC
BAA-968 / K-10) GN=tuf PE=3 SV=1
Length = 396
Score = 30.4 bits (67), Expect = 3.7, Method: Composition-based stats.
Identities = 29/104 (27%), Positives = 42/104 (40%), Gaps = 18/104 (17%)
Query: 10 PVKRFEPVLIMCVTTYFLMMGILTLYTTYKEKGIFAVAKKDHIVWEASSYLKKYDDMYNL 69
PV+ + +M V F + G T+ T E+G+ V ++ IV
Sbjct: 204 PVRETDKPFLMPVEDVFTITGRGTVVTGRVERGVINVNEEVEIVG--------------- 248
Query: 70 VLQYKDTKTGVTRSEQFNKSV--ANYFDETGLLLPDLVENDVSR 111
++ TKT VT E F K + D GLLL + DV R
Sbjct: 249 -IRPSSTKTTVTGVEMFRKLLDQGQAGDNVGLLLRGIKREDVER 291
>sp|A0QL35|EFTU_MYCA1 Elongation factor Tu OS=Mycobacterium avium (strain 104) GN=tuf
PE=3 SV=1
Length = 396
Score = 30.4 bits (67), Expect = 3.7, Method: Composition-based stats.
Identities = 29/104 (27%), Positives = 42/104 (40%), Gaps = 18/104 (17%)
Query: 10 PVKRFEPVLIMCVTTYFLMMGILTLYTTYKEKGIFAVAKKDHIVWEASSYLKKYDDMYNL 69
PV+ + +M V F + G T+ T E+G+ V ++ IV
Sbjct: 204 PVRETDKPFLMPVEDVFTITGRGTVVTGRVERGVINVNEEVEIVG--------------- 248
Query: 70 VLQYKDTKTGVTRSEQFNKSV--ANYFDETGLLLPDLVENDVSR 111
++ TKT VT E F K + D GLLL + DV R
Sbjct: 249 -IRPSSTKTTVTGVEMFRKLLDQGQAGDNVGLLLRGIKREDVER 291
>sp|A4QBH0|EFTU_CORGB Elongation factor Tu OS=Corynebacterium glutamicum (strain R)
GN=tuf PE=3 SV=1
Length = 396
Score = 30.4 bits (67), Expect = 3.8, Method: Composition-based stats.
Identities = 29/104 (27%), Positives = 42/104 (40%), Gaps = 18/104 (17%)
Query: 10 PVKRFEPVLIMCVTTYFLMMGILTLYTTYKEKGIFAVAKKDHIVWEASSYLKKYDDMYNL 69
PV+ + +M + F + G T+ T E+G V DD+ +
Sbjct: 204 PVRETDKPFLMPIEDIFTITGRGTVVTGRVERGTLNVN----------------DDVDII 247
Query: 70 VLQYKDTKTGVTRSEQFNKSV--ANYFDETGLLLPDLVENDVSR 111
++ K T T VT E F K + A D GLLL + DV R
Sbjct: 248 GIKEKSTSTTVTGIEMFRKLLDSAEAGDNCGLLLRGIKREDVER 291
>sp|A0PM42|EFTU_MYCUA Elongation factor Tu OS=Mycobacterium ulcerans (strain Agy99)
GN=tuf PE=3 SV=1
Length = 396
Score = 30.0 bits (66), Expect = 3.8, Method: Composition-based stats.
Identities = 30/104 (28%), Positives = 42/104 (40%), Gaps = 18/104 (17%)
Query: 10 PVKRFEPVLIMCVTTYFLMMGILTLYTTYKEKGIFAVAKKDHIVWEASSYLKKYDDMYNL 69
PV+ + +M V F + G T+ T E+GI V ++ IV
Sbjct: 204 PVRETDRPFLMPVEDVFTITGRGTVVTGRVERGIINVNEEVEIVG--------------- 248
Query: 70 VLQYKDTKTGVTRSEQFNKSV--ANYFDETGLLLPDLVENDVSR 111
++ TKT VT E F K + D GLLL + DV R
Sbjct: 249 -IRPTSTKTTVTGVEMFRKLLDQGQAGDNVGLLLRGIKREDVER 291
>sp|B2HSL3|EFTU_MYCMM Elongation factor Tu OS=Mycobacterium marinum (strain ATCC BAA-535
/ M) GN=tuf PE=3 SV=1
Length = 396
Score = 30.0 bits (66), Expect = 3.8, Method: Composition-based stats.
Identities = 30/104 (28%), Positives = 42/104 (40%), Gaps = 18/104 (17%)
Query: 10 PVKRFEPVLIMCVTTYFLMMGILTLYTTYKEKGIFAVAKKDHIVWEASSYLKKYDDMYNL 69
PV+ + +M V F + G T+ T E+GI V ++ IV
Sbjct: 204 PVRETDRPFLMPVEDVFTITGRGTVVTGRVERGIINVNEEVEIVG--------------- 248
Query: 70 VLQYKDTKTGVTRSEQFNKSV--ANYFDETGLLLPDLVENDVSR 111
++ TKT VT E F K + D GLLL + DV R
Sbjct: 249 -IRPTSTKTTVTGVEMFRKLLDQGQAGDNVGLLLRGIKREDVER 291
>sp|P42439|EFTU_CORGL Elongation factor Tu OS=Corynebacterium glutamicum (strain ATCC
13032 / DSM 20300 / JCM 1318 / LMG 3730 / NCIMB 10025)
GN=tuf PE=1 SV=1
Length = 396
Score = 30.0 bits (66), Expect = 4.0, Method: Composition-based stats.
Identities = 29/104 (27%), Positives = 42/104 (40%), Gaps = 18/104 (17%)
Query: 10 PVKRFEPVLIMCVTTYFLMMGILTLYTTYKEKGIFAVAKKDHIVWEASSYLKKYDDMYNL 69
PV+ + +M + F + G T+ T E+G V DD+ +
Sbjct: 204 PVRETDKPFLMPIEDIFTITGRGTVVTGRVERGTLNVN----------------DDVDII 247
Query: 70 VLQYKDTKTGVTRSEQFNKSV--ANYFDETGLLLPDLVENDVSR 111
++ K T T VT E F K + A D GLLL + DV R
Sbjct: 248 GIKEKSTSTTVTGIEMFRKLLDSAEAGDNCGLLLRGIKREDVER 291
>sp|A1T4L6|EFTU_MYCVP Elongation factor Tu OS=Mycobacterium vanbaalenii (strain DSM 7251
/ PYR-1) GN=tuf PE=3 SV=1
Length = 396
Score = 30.0 bits (66), Expect = 4.2, Method: Composition-based stats.
Identities = 30/104 (28%), Positives = 42/104 (40%), Gaps = 18/104 (17%)
Query: 10 PVKRFEPVLIMCVTTYFLMMGILTLYTTYKEKGIFAVAKKDHIVWEASSYLKKYDDMYNL 69
PV+ + +M V F + G T+ T E+GI V ++ IV
Sbjct: 204 PVRETDKPFLMPVEDVFTITGRGTVVTGRVERGIINVNEEVEIVG--------------- 248
Query: 70 VLQYKDTKTGVTRSEQFNKSV--ANYFDETGLLLPDLVENDVSR 111
++ TKT VT E F K + D GLLL + DV R
Sbjct: 249 -IRPDTTKTTVTGVEMFRKLLDQGQAGDNVGLLLRGIKREDVER 291
>sp|A5IYA9|EFTU_MYCAP Elongation factor Tu OS=Mycoplasma agalactiae (strain PG2) GN=tuf
PE=3 SV=1
Length = 396
Score = 30.0 bits (66), Expect = 4.4, Method: Composition-based stats.
Identities = 30/105 (28%), Positives = 44/105 (41%), Gaps = 19/105 (18%)
Query: 9 TPVKRFEPVLIMCVTTYFLMMGILTLYTTYKEKGIFAVAKKDHIVWEASSYLKKYDDMYN 68
TPVK FE +M V F + G T+ T E+G ++ ++ IV +
Sbjct: 204 TPVKDFEKPFLMAVEDVFTISGRGTVATGRVERGRLSLNEEVEIVGLKPT---------- 253
Query: 69 LVLQYKDTKTGVTRSEQFNKSV--ANYFDETGLLLPDLVENDVSR 111
KT VT E F K++ A D GLLL + + + R
Sbjct: 254 -------KKTVVTGIEMFRKNLKEAQAGDNAGLLLRGVERSAIER 291
>sp|Q1PDC4|L_MABVR RNA-directed RNA polymerase L OS=Lake Victoria marburgvirus (strain
Ravn-87) GN=L PE=3 SV=1
Length = 2327
Score = 29.6 bits (65), Expect = 5.2, Method: Composition-based stats.
Identities = 24/79 (30%), Positives = 30/79 (37%), Gaps = 23/79 (29%)
Query: 3 YLPRNFTPVKRFEPVLIMCVTTYFLMMGILTLYTTYKEKGIFAVAKKDHIVWEASSYLKK 62
YL F +K EP+ + C+ TY GIF K W S +K
Sbjct: 290 YLEDGFKLIKHLEPLCVSCIQTY----------------GIFTPRK----YWFQSQMIKS 329
Query: 63 YDD---MYNLVLQYKDTKT 78
Y D NL LQ D +T
Sbjct: 330 YYDELQSLNLKLQIPDNRT 348
>sp|A5GW14|EFTU_SYNR3 Elongation factor Tu OS=Synechococcus sp. (strain RCC307) GN=tuf
PE=3 SV=1
Length = 399
Score = 29.6 bits (65), Expect = 5.4, Method: Composition-based stats.
Identities = 30/105 (28%), Positives = 43/105 (40%), Gaps = 21/105 (20%)
Query: 10 PVKRFEPVLIMCVTTYFLMMGILTLYTTYKEKGIFAVAKKDHIVWEASSYLKKYDDMYNL 69
PV+ + +M V F + G T+ T E+GI V ++ IV
Sbjct: 203 PVREVDKPFLMAVEDVFSITGRGTVATGRIERGIVKVGEEIEIV---------------- 246
Query: 70 VLQYKDT-KTGVTRSEQFNKSVANYF--DETGLLLPDLVENDVSR 111
KDT K+ VT E F K + D GLLL + + D+ R
Sbjct: 247 --GIKDTRKSTVTGVEMFRKLLDEGMAGDNVGLLLRGIQKEDIER 289
>sp|A6W5T5|EFTU_KINRD Elongation factor Tu OS=Kineococcus radiotolerans (strain ATCC
BAA-149 / DSM 14245 / SRS30216) GN=tuf PE=3 SV=1
Length = 397
Score = 29.6 bits (65), Expect = 5.5, Method: Composition-based stats.
Identities = 27/104 (25%), Positives = 41/104 (39%), Gaps = 18/104 (17%)
Query: 10 PVKRFEPVLIMCVTTYFLMMGILTLYTTYKEKGIFAVAKKDHIVWEASSYLKKYDDMYNL 69
P + + +M + F + G T+ T E+G+ V ++ +V
Sbjct: 205 PERAIDQPFLMPIEDVFTITGRGTVVTGRIERGVLNVNQEVEVVG--------------- 249
Query: 70 VLQYKDTKTGVTRSEQFNK--SVANYFDETGLLLPDLVENDVSR 111
++ TKT VT E FNK D LLL L +DV R
Sbjct: 250 -IKPTSTKTTVTSIEMFNKMLDTGQAGDNAALLLRGLKRDDVER 292
>sp|A9BJB2|SYE1_PETMO Glutamate--tRNA ligase 1 OS=Petrotoga mobilis (strain DSM 10674 /
SJ95) GN=gltX1 PE=3 SV=1
Length = 467
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 27/38 (71%), Gaps = 2/38 (5%)
Query: 39 KEKGIFAVAKKDHIVWEASSYLKKY--DDMYNLVLQYK 74
+EK F+V K D I++E ++ L KY ++ Y++V+++K
Sbjct: 99 EEKAYFSVTKNDEIIFEGNNLLDKYKKNNDYSVVVKFK 136
>sp|P0A558|EFTU_MYCTU Elongation factor Tu OS=Mycobacterium tuberculosis GN=tuf PE=3 SV=1
Length = 396
Score = 29.6 bits (65), Expect = 5.7, Method: Composition-based stats.
Identities = 29/104 (27%), Positives = 42/104 (40%), Gaps = 18/104 (17%)
Query: 10 PVKRFEPVLIMCVTTYFLMMGILTLYTTYKEKGIFAVAKKDHIVWEASSYLKKYDDMYNL 69
PV+ + +M V F + G T+ T E+G+ V ++ IV
Sbjct: 204 PVRETDKPFLMPVEDVFTITGRGTVVTGRVERGVINVNEEVEIVG--------------- 248
Query: 70 VLQYKDTKTGVTRSEQFNKSV--ANYFDETGLLLPDLVENDVSR 111
++ TKT VT E F K + D GLLL + DV R
Sbjct: 249 -IRPSTTKTTVTGVEMFRKLLDQGQAGDNVGLLLRGVKREDVER 291
>sp|A5U071|EFTU_MYCTA Elongation factor Tu OS=Mycobacterium tuberculosis (strain ATCC
25177 / H37Ra) GN=tuf PE=3 SV=1
Length = 396
Score = 29.6 bits (65), Expect = 5.7, Method: Composition-based stats.
Identities = 29/104 (27%), Positives = 42/104 (40%), Gaps = 18/104 (17%)
Query: 10 PVKRFEPVLIMCVTTYFLMMGILTLYTTYKEKGIFAVAKKDHIVWEASSYLKKYDDMYNL 69
PV+ + +M V F + G T+ T E+G+ V ++ IV
Sbjct: 204 PVRETDKPFLMPVEDVFTITGRGTVVTGRVERGVINVNEEVEIVG--------------- 248
Query: 70 VLQYKDTKTGVTRSEQFNKSV--ANYFDETGLLLPDLVENDVSR 111
++ TKT VT E F K + D GLLL + DV R
Sbjct: 249 -IRPSTTKTTVTGVEMFRKLLDQGQAGDNVGLLLRGVKREDVER 291
>sp|C1AL18|EFTU_MYCBT Elongation factor Tu OS=Mycobacterium bovis (strain BCG / Tokyo 172
/ ATCC 35737 / TMC 1019) GN=tuf PE=3 SV=1
Length = 396
Score = 29.6 bits (65), Expect = 5.7, Method: Composition-based stats.
Identities = 29/104 (27%), Positives = 42/104 (40%), Gaps = 18/104 (17%)
Query: 10 PVKRFEPVLIMCVTTYFLMMGILTLYTTYKEKGIFAVAKKDHIVWEASSYLKKYDDMYNL 69
PV+ + +M V F + G T+ T E+G+ V ++ IV
Sbjct: 204 PVRETDKPFLMPVEDVFTITGRGTVVTGRVERGVINVNEEVEIVG--------------- 248
Query: 70 VLQYKDTKTGVTRSEQFNKSV--ANYFDETGLLLPDLVENDVSR 111
++ TKT VT E F K + D GLLL + DV R
Sbjct: 249 -IRPSTTKTTVTGVEMFRKLLDQGQAGDNVGLLLRGVKREDVER 291
>sp|A1KGG5|EFTU_MYCBP Elongation factor Tu OS=Mycobacterium bovis (strain BCG / Pasteur
1173P2) GN=tuf PE=3 SV=1
Length = 396
Score = 29.6 bits (65), Expect = 5.7, Method: Composition-based stats.
Identities = 29/104 (27%), Positives = 42/104 (40%), Gaps = 18/104 (17%)
Query: 10 PVKRFEPVLIMCVTTYFLMMGILTLYTTYKEKGIFAVAKKDHIVWEASSYLKKYDDMYNL 69
PV+ + +M V F + G T+ T E+G+ V ++ IV
Sbjct: 204 PVRETDKPFLMPVEDVFTITGRGTVVTGRVERGVINVNEEVEIVG--------------- 248
Query: 70 VLQYKDTKTGVTRSEQFNKSV--ANYFDETGLLLPDLVENDVSR 111
++ TKT VT E F K + D GLLL + DV R
Sbjct: 249 -IRPSTTKTTVTGVEMFRKLLDQGQAGDNVGLLLRGVKREDVER 291
>sp|P0A559|EFTU_MYCBO Elongation factor Tu OS=Mycobacterium bovis (strain ATCC BAA-935 /
AF2122/97) GN=tuf PE=3 SV=1
Length = 396
Score = 29.6 bits (65), Expect = 5.7, Method: Composition-based stats.
Identities = 29/104 (27%), Positives = 42/104 (40%), Gaps = 18/104 (17%)
Query: 10 PVKRFEPVLIMCVTTYFLMMGILTLYTTYKEKGIFAVAKKDHIVWEASSYLKKYDDMYNL 69
PV+ + +M V F + G T+ T E+G+ V ++ IV
Sbjct: 204 PVRETDKPFLMPVEDVFTITGRGTVVTGRVERGVINVNEEVEIVG--------------- 248
Query: 70 VLQYKDTKTGVTRSEQFNKSV--ANYFDETGLLLPDLVENDVSR 111
++ TKT VT E F K + D GLLL + DV R
Sbjct: 249 -IRPSTTKTTVTGVEMFRKLLDQGQAGDNVGLLLRGVKREDVER 291
>sp|Q6KZN5|SYS_PICTO Serine--tRNA ligase OS=Picrophilus torridus (strain ATCC 700027 /
DSM 9790 / JCM 10055 / NBRC 100828) GN=serS PE=3 SV=1
Length = 444
Score = 29.3 bits (64), Expect = 7.0, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 31/63 (49%)
Query: 49 KDHIVWEASSYLKKYDDMYNLVLQYKDTKTGVTRSEQFNKSVANYFDETGLLLPDLVEND 108
K+ I E S +K DD+ +L L+ + + R E + +E L+P+L+ +D
Sbjct: 52 KNSITMEISRRIKSGDDINDLKLKVESLNIDIQRLEGRQNEIDVKRNEILRLIPNLLADD 111
Query: 109 VSR 111
V R
Sbjct: 112 VPR 114
>sp|Q9LRW3|SCL29_ARATH Scarecrow-like protein 29 OS=Arabidopsis thaliana GN=SCL29 PE=2
SV=1
Length = 510
Score = 29.3 bits (64), Expect = 7.8, Method: Composition-based stats.
Identities = 15/46 (32%), Positives = 25/46 (54%)
Query: 35 YTTYKEKGIFAVAKKDHIVWEASSYLKKYDDMYNLVLQYKDTKTGV 80
Y +E G F A ++ V A S L+KYD+ + + ++ DT G+
Sbjct: 451 YERMREAGFFVEAFEEDAVDGAKSLLRKYDNNWEIRMEDGDTFAGL 496
>sp|Q00823|ATPX_ODOSI ATP synthase subunit b', chloroplastic OS=Odontella sinensis
GN=atpG PE=3 SV=1
Length = 156
Score = 29.3 bits (64), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Query: 10 PVKRFEPVLIMCVTTYFLMMGILTLYTTYKEKGIFAVAKKDHIVWEASSYLKKYDDMYNL 69
P+ + +L+M + L +LT+ KE + +AK I+ +A+ +Y+ N
Sbjct: 27 PLVAIQFLLLMVLLNVILYSPLLTIIEERKEYILNKLAKASEILSQANELTAQYEQELNT 86
Query: 70 VLQYKDTKTGVTRSEQFNKSV 90
V K+ + +T S++ +K +
Sbjct: 87 V--RKEAQLEITNSQKIHKEI 105
>sp|P27514|PHO91_YEAST Low-affinity phosphate transporter PHO91 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=PHO91 PE=1
SV=2
Length = 894
Score = 29.3 bits (64), Expect = 8.0, Method: Composition-based stats.
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Query: 49 KDHIVWEASSYLKKYDDMYNLVLQYKDTKTGVTRSEQFNKS 89
+DH+VWE ++ K DM NL +Y+ KT + + + S
Sbjct: 340 RDHVVWERNTVWK---DMMNLERKYQSAKTDNKKFSKLSSS 377
>sp|Q9QZY9|CD1B4_CAVPO T-cell surface glycoprotein CD1b4 OS=Cavia porcellus GN=CD1B4 PE=2
SV=1
Length = 330
Score = 29.3 bits (64), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 21/34 (61%)
Query: 41 KGIFAVAKKDHIVWEASSYLKKYDDMYNLVLQYK 74
KG+ ++ K+H W A + + +++ L+LQYK
Sbjct: 134 KGLDLLSIKNHSCWPAPEGVSRAQEIWTLILQYK 167
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.136 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,332,530
Number of Sequences: 539616
Number of extensions: 1709853
Number of successful extensions: 4528
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 39
Number of HSP's that attempted gapping in prelim test: 4489
Number of HSP's gapped (non-prelim): 62
length of query: 123
length of database: 191,569,459
effective HSP length: 90
effective length of query: 33
effective length of database: 143,004,019
effective search space: 4719132627
effective search space used: 4719132627
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)