Query psy9699
Match_columns 123
No_of_seqs 105 out of 199
Neff 6.7
Searched_HMMs 46136
Date Fri Aug 16 17:20:31 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9699.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9699hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF06703 SPC25: Microsomal sig 100.0 2.5E-38 5.3E-43 230.8 13.0 115 2-116 43-162 (162)
2 KOG4072|consensus 100.0 8E-34 1.7E-38 195.9 2.6 120 4-123 2-127 (127)
3 PF15000 TUSC2: Tumour suppres 60.0 4.4 9.6E-05 28.0 0.9 23 85-107 46-68 (111)
4 PF11322 DUF3124: Protein of u 47.9 16 0.00034 25.9 2.1 21 86-106 40-60 (125)
5 KOG0744|consensus 44.7 8.3 0.00018 32.1 0.3 29 84-113 217-245 (423)
6 cd04752 Commd4 COMM_Domain con 43.8 65 0.0014 23.5 5.0 39 55-93 117-157 (174)
7 PF00036 EF-hand_1: EF hand; 41.5 27 0.00058 18.0 1.9 18 95-112 12-29 (29)
8 PF07599 DUF1563: Protein of u 41.0 39 0.00085 19.1 2.6 20 21-40 4-23 (43)
9 TIGR01601 PYST-C1 Plasmodium y 40.1 15 0.00033 24.0 0.9 17 15-31 4-20 (82)
10 PF01473 CW_binding_1: Putativ 37.4 19 0.00041 16.6 0.8 8 93-100 12-19 (19)
11 PF01708 Gemini_mov: Geminivir 32.2 39 0.00085 22.6 2.0 29 21-50 41-70 (91)
12 PF14770 TMEM18: Transmembrane 31.2 27 0.00058 24.5 1.1 14 92-105 73-86 (123)
13 PF13405 EF-hand_6: EF-hand do 31.1 48 0.001 16.7 1.9 17 95-111 12-28 (31)
14 cd03144 GATase1_ScBLP_like Typ 30.6 7.4 0.00016 26.9 -1.8 26 13-48 76-101 (114)
15 PF08363 GbpC: Glucan-binding 29.6 40 0.00086 26.9 2.0 38 63-101 135-172 (283)
16 COG0765 HisM ABC-type amino ac 29.6 69 0.0015 24.6 3.2 26 17-42 192-217 (222)
17 PF13127 DUF3955: Protein of u 29.2 29 0.00062 21.5 0.9 14 90-103 24-37 (63)
18 PF03729 DUF308: Short repeat 28.0 1E+02 0.0022 18.0 3.3 26 16-41 22-47 (72)
19 TIGR03567 FMN_reduc_SsuE FMN r 27.2 65 0.0014 23.0 2.6 26 92-117 143-169 (171)
20 PRK15069 histidine/lysine/argi 26.8 80 0.0017 24.0 3.2 26 17-42 202-227 (234)
21 PHA02132 hypothetical protein 26.8 56 0.0012 21.1 1.9 26 11-36 8-33 (86)
22 PF05042 Caleosin: Caleosin re 26.5 48 0.001 24.7 1.8 41 63-112 64-105 (174)
23 PF13590 DUF4136: Domain of un 26.4 2.1E+02 0.0046 19.3 5.3 46 67-116 103-148 (151)
24 PF06196 DUF997: Protein of un 26.0 1.5E+02 0.0032 19.1 3.9 34 8-43 39-72 (80)
25 smart00054 EFh EF-hand, calciu 25.6 60 0.0013 14.4 1.6 17 95-111 12-28 (29)
26 PF13202 EF-hand_5: EF hand; P 25.3 74 0.0016 15.6 1.9 14 95-108 11-24 (25)
27 TIGR02690 resist_ArsH arsenica 25.2 72 0.0016 24.4 2.7 24 94-117 174-197 (219)
28 PF09926 DUF2158: Uncharacteri 24.4 27 0.00058 20.9 0.1 18 90-108 33-50 (53)
29 TIGR03249 KdgD 5-dehydro-4-deo 22.9 71 0.0015 25.0 2.3 25 90-114 13-37 (296)
30 PRK15100 amino acid ABC transp 22.7 1E+02 0.0023 22.8 3.1 28 15-42 186-213 (220)
31 COG3215 PilZ Tfp pilus assembl 22.7 1.6E+02 0.0035 20.4 3.7 83 29-113 20-108 (117)
32 CHL00005 rps16 ribosomal prote 22.4 2.3E+02 0.005 18.4 4.4 52 54-111 4-59 (82)
33 PF11295 DUF3096: Protein of u 21.8 1.3E+02 0.0029 16.9 2.6 20 17-36 17-36 (39)
34 PF11396 DUF2874: Protein of u 21.5 1.4E+02 0.0031 17.2 3.0 24 65-100 37-60 (61)
35 TIGR03592 yidC_oxa1_cterm memb 21.2 1.1E+02 0.0025 22.2 3.0 20 20-39 159-178 (181)
36 TIGR02313 HpaI-NOT-DapA 2,4-di 20.6 84 0.0018 24.7 2.3 25 90-114 8-32 (294)
37 PF07981 Plasmod_MYXSPDY: Plas 20.5 82 0.0018 14.5 1.3 11 63-73 3-13 (17)
38 PF07661 MORN_2: MORN repeat v 20.3 42 0.0009 15.3 0.3 12 92-103 6-17 (22)
No 1
>PF06703 SPC25: Microsomal signal peptidase 25 kDa subunit (SPC25); InterPro: IPR009582 This family consists of several microsomal signal peptidase 25 kDa subunit proteins. Translocation of polypeptide chains across the endoplasmic reticulum (ER) membrane is triggered by signal sequences. Subsequently, signal recognition particle interacts with its membrane receptor and the ribosome-bound nascent chain is targeted to the ER where it is transferred into a protein-conducting channel. At some point, a second signal sequence recognition event takes place in the membrane and translocation of the nascent chain through the membrane occurs. The signal sequence of most secretory and membrane proteins is cleaved off at this stage. Cleavage occurs by the signal peptidase complex (SPC) as soon as the lumenal domain of the translocating polypeptide is large enough to expose its cleavage site to the enzyme. The signal peptidase complex is possibly also involved in proteolytic events in the ER membrane other than the processing of the signal sequence, for example the further digestion of the cleaved signal peptide or the degradation of membrane proteins. Mammalian signal peptidase is as a complex of five different polypeptide chains [].; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=100.00 E-value=2.5e-38 Score=230.82 Aligned_cols=115 Identities=38% Similarity=0.633 Sum_probs=109.3
Q ss_pred eeecccccCCCCchhhhhhHHHHHHHHHHHHHHHHhhhhcCeEEEEE-e----CCcEEEEEeecCCCCceeEEEEEEEeC
Q psy9699 2 WYLPRNFTPVKRFEPVLIMCVTTYFLMMGILTLYTTYKEKGIFAVAK-K----DHIVWEASSYLKKYDDMYNLVLQYKDT 76 (123)
Q Consensus 2 ~f~~dy~~~f~~sk~~l~~~V~~YfiLsgilt~~~~~vEK~~~yvg~-k----~~~~i~isS~~~k~~p~Y~l~l~~~~~ 76 (123)
+|+|||++|||+|++++++||++||+|||+||+|++|+|||++|+|. + ++++|+|+|+++||+|+|+|++++.++
T Consensus 43 a~~~d~~~~f~~s~~~~~~~v~~YfiLs~il~~~~~~~ek~~~~~g~~~~~~~~~~~i~i~s~~~k~~p~Y~l~i~~~~~ 122 (162)
T PF06703_consen 43 AFFYDYKYPFPESKPYLIICVILYFILSGILTLYSYFVEKDIFYVGKRKDGSSSGEKITISSSMPKYDPIYTLTITYRDG 122 (162)
T ss_pred HHHhhhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeccCCCCCCCEEEEEEEccCCCCeEEEEEEEEcC
Confidence 58999999999999999999999999999999999999999999999 6 589999999999999999999999988
Q ss_pred CCCeeeeEEEeeeccceeccCceechHhHHHHHHHHHHHH
Q psy9699 77 KTGVTRSEQFNKSVANYFDETGLLLPDLVENDVSRLHNSI 116 (123)
Q Consensus 77 ~~~~~~~~~~~~~v~~~Fd~~G~l~~~~f~~~l~~l~~~l 116 (123)
+++..++.+.++|+++|||+||+|++++|++|++++++++
T Consensus 123 ~~~~~~~~~~~~~v~~~Fde~G~l~~~~~~~~l~~ll~~~ 162 (162)
T PF06703_consen 123 KSKSSKEVSVSKSVGKFFDEDGYLVEDLFENWLEKLLEKF 162 (162)
T ss_pred CCCccceEEEEEehhhEECCCCEEeHHHHHHHHHHHHhcC
Confidence 7666677999999999999999999999999999999864
No 2
>KOG4072|consensus
Probab=99.98 E-value=8e-34 Score=195.86 Aligned_cols=120 Identities=47% Similarity=0.786 Sum_probs=116.2
Q ss_pred ecccccCCCCchhhhhhHHHHHHHHHHHHHHHHhhhhcCeEEEEE-eC-----CcEEEEEeecCCCCceeEEEEEEEeCC
Q psy9699 4 LPRNFTPVKRFEPVLIMCVTTYFLMMGILTLYTTYKEKGIFAVAK-KD-----HIVWEASSYLKKYDDMYNLVLQYKDTK 77 (123)
Q Consensus 4 ~~dy~~~f~~sk~~l~~~V~~YfiLsgilt~~~~~vEK~~~yvg~-k~-----~~~i~isS~~~k~~p~Y~l~l~~~~~~ 77 (123)
.|||..|||+|+++++.||.+||+++|+|+++++|+|||+++++. ++ ...|..||++++||+.|++++++.+++
T Consensus 2 ~~D~~~pfP~sk~vla~~v~syf~~mGil~~~~s~vek~i~~~a~q~d~~~~~~r~W~~ss~~ka~dDky~l~l~f~~gr 81 (127)
T KOG4072|consen 2 TADSRHPFPESKPVLAPCVWSYFQMMGILTIYTSYVEKSIFLVAHQKDPGMDPDRIWQLSSSLKAFDDKYTLKLTFISGR 81 (127)
T ss_pred CccccCcCCCCcceeeeHHHHHHHHHhHHHHHHHHhcccceehhhhhccCCCCCcccccchhhhhccCcceeEEEEEecc
Confidence 589999999999999999999999999999999999999999998 66 688999999999999999999999999
Q ss_pred CCeeeeEEEeeeccceeccCceechHhHHHHHHHHHHHHhhhhccC
Q psy9699 78 TGVTRSEQFNKSVANYFDETGLLLPDLVENDVSRLHNSILAEKKKE 123 (123)
Q Consensus 78 ~~~~~~~~~~~~v~~~Fd~~G~l~~~~f~~~l~~l~~~l~~~kk~~ 123 (123)
+|++|+.++++++++|||.+|.+..++..++++.++++|.+++|++
T Consensus 82 ~gq~reak~tKsiakffDh~Gtl~~plv~~ev~~l~daLa~~~ki~ 127 (127)
T KOG4072|consen 82 TGQQREAKFTKSIAKFFDHSGTLVMPLVEPEVSRLHDALASERKIK 127 (127)
T ss_pred cchhhhhHHHHHHHHHccCCCeEeccCCccccchHHHHHHHHhccC
Confidence 9999999999999999999999999999999999999999999875
No 3
>PF15000 TUSC2: Tumour suppressor candidate 2
Probab=60.04 E-value=4.4 Score=28.04 Aligned_cols=23 Identities=35% Similarity=0.608 Sum_probs=18.4
Q ss_pred EEeeeccceeccCceechHhHHH
Q psy9699 85 QFNKSVANYFDETGLLLPDLVEN 107 (123)
Q Consensus 85 ~~~~~v~~~Fd~~G~l~~~~f~~ 107 (123)
-.+..=+.||||||-|..+-+++
T Consensus 46 V~tr~sS~y~DeDGdlAhEFYeE 68 (111)
T PF15000_consen 46 VFTRRSSMYFDEDGDLAHEFYEE 68 (111)
T ss_pred EEecCCceeEcCCcchhhhhhhh
Confidence 44455577999999999998877
No 4
>PF11322 DUF3124: Protein of unknown function (DUF3124); InterPro: IPR021471 This bacterial family of proteins has no known function.
Probab=47.89 E-value=16 Score=25.91 Aligned_cols=21 Identities=19% Similarity=0.512 Sum_probs=15.2
Q ss_pred EeeeccceeccCceechHhHH
Q psy9699 86 FNKSVANYFDETGLLLPDLVE 106 (123)
Q Consensus 86 ~~~~v~~~Fd~~G~l~~~~f~ 106 (123)
+...=.+|||.+|.|...-+.
T Consensus 40 i~i~~v~Yydt~G~lvr~yl~ 60 (125)
T PF11322_consen 40 IYITSVDYYDTDGKLVRSYLD 60 (125)
T ss_pred EEEEEEEEECCCCeEhHHhcC
Confidence 333347899999999877654
No 5
>KOG0744|consensus
Probab=44.71 E-value=8.3 Score=32.10 Aligned_cols=29 Identities=17% Similarity=0.407 Sum_probs=20.9
Q ss_pred EEEeeeccceeccCceechHhHHHHHHHHH
Q psy9699 84 EQFNKSVANYFDETGLLLPDLVENDVSRLH 113 (123)
Q Consensus 84 ~~~~~~v~~~Fd~~G~l~~~~f~~~l~~l~ 113 (123)
.....=|++||.|.|.++...|++ +.+++
T Consensus 217 inshsLFSKWFsESgKlV~kmF~k-I~ELv 245 (423)
T KOG0744|consen 217 INSHSLFSKWFSESGKLVAKMFQK-IQELV 245 (423)
T ss_pred EehhHHHHHHHhhhhhHHHHHHHH-HHHHH
Confidence 344456899999999999988754 44443
No 6
>cd04752 Commd4 COMM_Domain containing protein 4. The COMM Domain is found at the C-terminus of a variety of proteins; presumably all COMM_Domain containing proteins are located in the nucleus and the COMM domain plays a role in protein-protein interactions. Several family members have been shown to bind and inhibit NF-kappaB.
Probab=43.76 E-value=65 Score=23.51 Aligned_cols=39 Identities=21% Similarity=0.273 Sum_probs=26.4
Q ss_pred EEEeec--CCCCceeEEEEEEEeCCCCeeeeEEEeeeccce
Q psy9699 55 EASSYL--KKYDDMYNLVLQYKDTKTGVTRSEQFNKSVANY 93 (123)
Q Consensus 55 ~isS~~--~k~~p~Y~l~l~~~~~~~~~~~~~~~~~~v~~~ 93 (123)
.++|+. +-..|.+++.+...++.+|...+..++-+..++
T Consensus 117 ~lsSs~l~~~~~P~~~l~L~v~~~~~~~~~~v~~e~s~~ql 157 (174)
T cd04752 117 ILSSSELQEVNEPLVQLRLKVRNADTGEITPHPFSVSADKF 157 (174)
T ss_pred EEcchhhhhcCCCeEEEEEeeecCCCCCcceEEEEecHHHH
Confidence 445542 348999999999987766655566666655553
No 7
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=41.47 E-value=27 Score=17.97 Aligned_cols=18 Identities=17% Similarity=0.204 Sum_probs=14.0
Q ss_pred ccCceechHhHHHHHHHH
Q psy9699 95 DETGLLLPDLVENDVSRL 112 (123)
Q Consensus 95 d~~G~l~~~~f~~~l~~l 112 (123)
|-||++..+.|...+.+|
T Consensus 12 d~dG~I~~~Ef~~~~~~L 29 (29)
T PF00036_consen 12 DGDGKIDFEEFKEMMKKL 29 (29)
T ss_dssp TSSSEEEHHHHHHHHHHT
T ss_pred CCCCcCCHHHHHHHHHhC
Confidence 457999999988877653
No 8
>PF07599 DUF1563: Protein of unknown function (DUF1563); InterPro: IPR011457 This is a small family of short hypothetical proteins in Leptospira interrogans.
Probab=40.97 E-value=39 Score=19.11 Aligned_cols=20 Identities=35% Similarity=0.665 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHhhhh
Q psy9699 21 CVTTYFLMMGILTLYTTYKE 40 (123)
Q Consensus 21 ~V~~YfiLsgilt~~~~~vE 40 (123)
..+-+|+|-++=.+|++|+|
T Consensus 4 iL~~FFLL~TLeNlYatyve 23 (43)
T PF07599_consen 4 ILIGFFLLETLENLYATYVE 23 (43)
T ss_pred hhhHHHHHHHHHHHHHHHHH
Confidence 34568899999999999998
No 9
>TIGR01601 PYST-C1 Plasmodium yoelii subtelomeric domain PYST-C1. The C-terminal portions of the genes which contain this domain are divergent and some contain other yoelii-specific paralogous domains such as PYST-C2 (TIGR01604).
Probab=40.06 E-value=15 Score=24.02 Aligned_cols=17 Identities=18% Similarity=0.458 Sum_probs=13.0
Q ss_pred hhhhhhHHHHHHHHHHH
Q psy9699 15 EPVLIMCVTTYFLMMGI 31 (123)
Q Consensus 15 k~~l~~~V~~YfiLsgi 31 (123)
+.+-++|+++|.+|..-
T Consensus 4 rIfslVcivlY~ll~v~ 20 (82)
T TIGR01601 4 RIFSLVCIVLYILLAVS 20 (82)
T ss_pred eEeehhHHHHHHHHhee
Confidence 44668999999988654
No 10
>PF01473 CW_binding_1: Putative cell wall binding repeat; InterPro: IPR018337 The cell wall-binding repeat (CW) is an about 20 amino acid residue module, essentially found in two bacterial Gram-positive protein families; the choline binding proteins and glucosyltransferases (2.4.1.5 from EC). In choline-binding proteins cell wall binding repeats bind to choline moieties of both teichoic and lipoteichoic acids, two components peculiar to the cell surface of Gram-positive bacteria [, ]. In glucosyltransferases the region spanning the CW repeats is a glucan binding domain []. Several crystal structures of CW have been solved [, ]. In the choline binding protein LytA, the repeats adopt a solenoid fold consisting exclusively of beta-hairpins that stack to form a left-handed superhelix with a boomerang-like shape. The choline groups bind between beta-hairpin 'steps' of the superhelix []. In Cpl-1 CW repeats assemble in two sub-domains: an N-terminal superhelical moiety similar to the LytA one and a C-terminal beta-sheet involved in interactions with the lysozyme domain. Choline is bound between repeats 1 and 2, and, 2 and 3 of the superhelical sub-domain []. Some proteins known to contain cell-wall binding repeats include: Pneumococcal N-acetylmuramoyl-L-alanine amidase (autolysin, lytA) (3.5.1.28 from EC). It is a surface-exposed enzyme that rules the self-destruction of pneumococcal cells through degradation of their peptidoglycan backbone. It mediates the release of toxic substances that damage the host tissues. Pneumococcal endo-beta-N-acetylglucosaminidase (lytB) (3.2.1.96 from EC). It plays an important role in cell wall degradation and cell separation. Pneumococcal teichoic acid phosphorylcholine esterase (pce or cbpE), a cell wall hydrolase important for cellular adhesion and colonisation. Lactobacillales glucosyltransferase. It catalyses the transfer of glucosyl units from the cleavage of sucrose to a growing chain of glucan. Clostridium difficile toxin A (tcdA) and toxin B (tcdb). They are the causative agents of the antibiotic-associated pseudomembranous colitis. They are intracellular acting toxins that reach their targets after receptor-mediated endocytosis. Clostridium acetobutylicum cspA protein. Siphoviridae bacteriophages N-acetylmuramoyl-L-alanine amidase. It lyses the bacterial host cell wall. Podoviridae lysozyme protein (cpl-1). It is capable of digesting the pneumococcal cell wall. The cell wall binding repeats are also known as the choline-binding repeats (ChBr) or the choline-binding domain (ChBD). ; PDB: 1GVM_C 2BML_B 1HCX_A 1OBA_A 1H09_A 2J8F_A 2IXU_A 2J8G_A 2IXV_A 2X8O_A ....
Probab=37.43 E-value=19 Score=16.56 Aligned_cols=8 Identities=50% Similarity=1.211 Sum_probs=5.5
Q ss_pred eeccCcee
Q psy9699 93 YFDETGLL 100 (123)
Q Consensus 93 ~Fd~~G~l 100 (123)
+|+++|.+
T Consensus 12 y~~~~G~m 19 (19)
T PF01473_consen 12 YFDSDGYM 19 (19)
T ss_dssp EETTTSBB
T ss_pred EeCCCccC
Confidence 67777764
No 11
>PF01708 Gemini_mov: Geminivirus putative movement protein ; InterPro: IPR002621 This family consists of putative movement proteins from Maize streak virus and Wheat dwarf virus [].; GO: 0046740 spread of virus in host, cell to cell, 0016021 integral to membrane
Probab=32.20 E-value=39 Score=22.59 Aligned_cols=29 Identities=24% Similarity=0.268 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCeEEEEE-eC
Q psy9699 21 CVTTYFLMMGILTLYTTYKEKGIFAVAK-KD 50 (123)
Q Consensus 21 ~V~~YfiLsgilt~~~~~vEK~~~yvg~-k~ 50 (123)
++++.+.+-.++-+|+|+. ||+|++=+ |.
T Consensus 41 ~i~~lvaVg~~YL~y~~fL-kDlIlv~KAkr 70 (91)
T PF01708_consen 41 AIFTLVAVGCLYLAYTWFL-KDLILVLKAKR 70 (91)
T ss_pred eehHHHHHHHHHHHHHHHH-HHHhheeeecc
Confidence 4444555555556677766 88898876 44
No 12
>PF14770 TMEM18: Transmembrane protein 18
Probab=31.24 E-value=27 Score=24.50 Aligned_cols=14 Identities=36% Similarity=0.895 Sum_probs=11.4
Q ss_pred ceeccCceechHhH
Q psy9699 92 NYFDETGLLLPDLV 105 (123)
Q Consensus 92 ~~Fd~~G~l~~~~f 105 (123)
+|||++|.|..-.+
T Consensus 73 nYFDs~G~Fisvv~ 86 (123)
T PF14770_consen 73 NYFDSSGVFISVVF 86 (123)
T ss_pred cCcCCCCeeehHHH
Confidence 79999999876554
No 13
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=31.13 E-value=48 Score=16.71 Aligned_cols=17 Identities=12% Similarity=0.194 Sum_probs=13.8
Q ss_pred ccCceechHhHHHHHHH
Q psy9699 95 DETGLLLPDLVENDVSR 111 (123)
Q Consensus 95 d~~G~l~~~~f~~~l~~ 111 (123)
|.+|++..+.|.+.+++
T Consensus 12 d~dG~I~~~el~~~l~~ 28 (31)
T PF13405_consen 12 DGDGFIDFEELRAILRK 28 (31)
T ss_dssp TSSSEEEHHHHHHHHHH
T ss_pred CCCCcCcHHHHHHHHHH
Confidence 45799999999988874
No 14
>cd03144 GATase1_ScBLP_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP). Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP). Biotin-apoprotein ligase modifies proteins by covalently attaching biotin. ScBLP is known to biotinylate acety-CoA carboxylase and pyruvate carboxylase. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, the Cys residue found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow in a typical GATase1 domain is conserved.
Probab=30.62 E-value=7.4 Score=26.93 Aligned_cols=26 Identities=19% Similarity=0.236 Sum_probs=20.6
Q ss_pred CchhhhhhHHHHHHHHHHHHHHHHhhhhcCeEEEEE
Q psy9699 13 RFEPVLIMCVTTYFLMMGILTLYTTYKEKGIFAVAK 48 (123)
Q Consensus 13 ~sk~~l~~~V~~YfiLsgilt~~~~~vEK~~~yvg~ 48 (123)
+-++++.+|+++|+. |.+.|..+.+.
T Consensus 76 ~g~p~LGIClGAy~a----------~~~~G~~~~~~ 101 (114)
T cd03144 76 NGGNYLGICAGAYLA----------YFNGGPVFEGA 101 (114)
T ss_pred CCCcEEEEecCccce----------EEcCCeeeccC
Confidence 457899999999999 66677777654
No 15
>PF08363 GbpC: Glucan-binding protein C; InterPro: IPR013574 This domain is found in glucan-binding protein C (GbpC) and in the V-region of surface protein antigen; both these proteins belong to the Spa family of Streptococcal proteins []. This domain consists of a beta-supersandwich of 18 beta-strands in two sheets. There are at least four types of glucan-binding proteins (Gbp) in Streptococcus mutans, GbpA, GbpB, GbpC and GbpD. These proteins promote the adhesion of Streptococcal bacteria to teeth and are associated with dental caries []. GbpC is a cell-wall anchoring protein that plays an important role in sucrose-dependent adhesion by binding to soluble glucan synthesised by glucosyltransferase D (GTFD) []. Spa antigens I/II are multi-functional proteins expressed at the cell wall surface of oral Streptococci, where they function as adhesins. Antigens I/II recognise a wide range of ligands. They exert an immunomodulatory effect on human cells and are important in inflammatory disorders, such as dental caries. These proteins can be divided into seven regions: signal peptide, N-terminal, A-region (alanine-rich), V-region (variable domain), P-region (proline-rich), C-terminal domain, and a cell wall anchor motif. The V-region is the central domain and exhibits the greatest variability in sequence, and is responsible for binding monocyte receptors, its binding stimulating the release of TNF-alpha from the monocytes. The crystal structure of the V-region revealed a lectin-like fold that displays a putative preformed carbohydrate-binding site stabilised by a metal ion [].; GO: 0005488 binding, 0009405 pathogenesis, 0044406 adhesion to host, 0009274 peptidoglycan-based cell wall; PDB: 1JMM_A 3IPK_A 3IOX_A 2WD6_B.
Probab=29.64 E-value=40 Score=26.91 Aligned_cols=38 Identities=18% Similarity=0.271 Sum_probs=18.0
Q ss_pred CCceeEEEEEEEeCCCCeeeeEEEeeeccceeccCceec
Q psy9699 63 YDDMYNLVLQYKDTKTGVTRSEQFNKSVANYFDETGLLL 101 (123)
Q Consensus 63 ~~p~Y~l~l~~~~~~~~~~~~~~~~~~v~~~Fd~~G~l~ 101 (123)
.||.-++.+-...+..++....++... .+||||||.+.
T Consensus 135 ~DPT~ti~~~~~~~~~~~~~~~~v~v~-~~FYDedG~~i 172 (283)
T PF08363_consen 135 NDPTKTIFYGASTGDGGKDDSIKVNVD-VKFYDEDGKEI 172 (283)
T ss_dssp SSGGG-EEEE-TTSSEBTT-EEEEEEE-EEEEETTS-BE
T ss_pred CCCceEEEEEeecCCCCceeeeEEEeE-EEEECCCCCEE
Confidence 466655555433222221223344444 45999999864
No 16
>COG0765 HisM ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]
Probab=29.56 E-value=69 Score=24.63 Aligned_cols=26 Identities=19% Similarity=0.352 Sum_probs=21.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHhhhhcC
Q psy9699 17 VLIMCVTTYFLMMGILTLYTTYKEKG 42 (123)
Q Consensus 17 ~l~~~V~~YfiLsgilt~~~~~vEK~ 42 (123)
...++-+.|++++.+++......||-
T Consensus 192 ~~~~~a~iY~~l~~~ls~~~~~lErr 217 (222)
T COG0765 192 VYLLAALIYLILCLPLSLLSRRLERR 217 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556668999999999999999974
No 17
>PF13127 DUF3955: Protein of unknown function (DUF3955)
Probab=29.18 E-value=29 Score=21.47 Aligned_cols=14 Identities=36% Similarity=0.714 Sum_probs=12.1
Q ss_pred ccceeccCceechH
Q psy9699 90 VANYFDETGLLLPD 103 (123)
Q Consensus 90 v~~~Fd~~G~l~~~ 103 (123)
++++=|+||.++++
T Consensus 24 ~~syVd~~G~L~Ep 37 (63)
T PF13127_consen 24 IGSYVDEDGVLHEP 37 (63)
T ss_pred ccceECCCCeEecc
Confidence 45788999999998
No 18
>PF03729 DUF308: Short repeat of unknown function (DUF308); InterPro: IPR005325 This represents a group of short repeats that occurs in a limited number of membrane proteins. It may divide further in short repeats of around 7-10 residues of the pattern G-#-X(2)-#(2)-X (#=hydrophobic).
Probab=27.97 E-value=1e+02 Score=18.04 Aligned_cols=26 Identities=15% Similarity=0.565 Sum_probs=20.9
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhhhhc
Q psy9699 16 PVLIMCVTTYFLMMGILTLYTTYKEK 41 (123)
Q Consensus 16 ~~l~~~V~~YfiLsgilt~~~~~vEK 41 (123)
......++.+++++|+..+...+.++
T Consensus 22 ~~~~~i~g~~~i~~Gi~~l~~~~~~~ 47 (72)
T PF03729_consen 22 AALAIILGIWLIISGIFQLISAFRRR 47 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 45567788899999999999877743
No 19
>TIGR03567 FMN_reduc_SsuE FMN reductase, SsuE family. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the homodimeric, NAD(P)H-dependent enzyme SsuE from Escherichia coli, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. It is induced by sulfate starvation. The NADH-dependent enzyme MsuE from Pseudomonas aeruginosa is outside the scope of this model (see model TIGR03566).
Probab=27.17 E-value=65 Score=22.98 Aligned_cols=26 Identities=19% Similarity=0.291 Sum_probs=20.8
Q ss_pred ceeccCcee-chHhHHHHHHHHHHHHh
Q psy9699 92 NYFDETGLL-LPDLVENDVSRLHNSIL 117 (123)
Q Consensus 92 ~~Fd~~G~l-~~~~f~~~l~~l~~~l~ 117 (123)
.-||++|.+ ..+...+.+.++...+.
T Consensus 143 ~~~d~~g~~~~d~~~~~~l~~~~~~~~ 169 (171)
T TIGR03567 143 IERDEDGTLQLDEEIKERLDEALEDLV 169 (171)
T ss_pred hccccCCccccCHHHHHHHHHHHHHHH
Confidence 449999999 76777888888887764
No 20
>PRK15069 histidine/lysine/arginine/ornithine ABC transporter permease HisM; Provisional
Probab=26.80 E-value=80 Score=23.99 Aligned_cols=26 Identities=12% Similarity=0.168 Sum_probs=21.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHhhhhcC
Q psy9699 17 VLIMCVTTYFLMMGILTLYTTYKEKG 42 (123)
Q Consensus 17 ~l~~~V~~YfiLsgilt~~~~~vEK~ 42 (123)
...++.++|++++.++.....+.||-
T Consensus 202 ~~~~~~~~Y~~l~~~~~~~~~~le~r 227 (234)
T PRK15069 202 AFGIAAVLYLIISFVLISLFRRAERR 227 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567778999999999999999974
No 21
>PHA02132 hypothetical protein
Probab=26.79 E-value=56 Score=21.06 Aligned_cols=26 Identities=19% Similarity=0.180 Sum_probs=20.3
Q ss_pred CCCchhhhhhHHHHHHHHHHHHHHHH
Q psy9699 11 VKRFEPVLIMCVTTYFLMMGILTLYT 36 (123)
Q Consensus 11 f~~sk~~l~~~V~~YfiLsgilt~~~ 36 (123)
|-.|..|.++++.+|.++.|.-.+=.
T Consensus 8 f~~svqys~ia~~vyvl~hg~affde 33 (86)
T PHA02132 8 FILSVQYSIIAVMVYVLIHGFAFFDE 33 (86)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 44678899999999999999764433
No 22
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=26.49 E-value=48 Score=24.74 Aligned_cols=41 Identities=20% Similarity=0.340 Sum_probs=27.8
Q ss_pred CCceeEEEEEEEe-CCCCeeeeEEEeeeccceeccCceechHhHHHHHHHH
Q psy9699 63 YDDMYNLVLQYKD-TKTGVTRSEQFNKSVANYFDETGLLLPDLVENDVSRL 112 (123)
Q Consensus 63 ~~p~Y~l~l~~~~-~~~~~~~~~~~~~~v~~~Fd~~G~l~~~~f~~~l~~l 112 (123)
.+|...+-|.... ++ ..|=+.-+|.+|.|+++.|++-+++.
T Consensus 64 p~P~f~Iyi~nIhk~k---------HGSDSg~YD~eGrFvp~kFe~iF~ky 105 (174)
T PF05042_consen 64 PDPFFRIYIKNIHKGK---------HGSDSGAYDTEGRFVPQKFEEIFSKY 105 (174)
T ss_pred CCCceeEEeecccccc---------cCCCccccccCCcCCHHHHHHHHHHh
Confidence 4666666665321 11 12335579999999999999988874
No 23
>PF13590 DUF4136: Domain of unknown function (DUF4136)
Probab=26.40 E-value=2.1e+02 Score=19.32 Aligned_cols=46 Identities=13% Similarity=0.240 Sum_probs=31.0
Q ss_pred eEEEEEEEeCCCCeeeeEEEeeeccceeccCceechHhHHHHHHHHHHHH
Q psy9699 67 YNLVLQYKDTKTGVTRSEQFNKSVANYFDETGLLLPDLVENDVSRLHNSI 116 (123)
Q Consensus 67 Y~l~l~~~~~~~~~~~~~~~~~~v~~~Fd~~G~l~~~~f~~~l~~l~~~l 116 (123)
-+|.|...|.+++ +.-++......++++.. ..+.+...++++++.+
T Consensus 103 g~L~i~i~D~~~~---~~vW~g~a~~~~~~~~~-~~~~i~~~V~~i~~~f 148 (151)
T PF13590_consen 103 GTLVIDIIDAKTN---KVVWRGTASGRLSDNAD-REEAIPKAVNKIFEQF 148 (151)
T ss_pred EEEEEEEEeCCCC---CEEEEEEEEeccCCCcC-HHHHHHHHHHHHHHhC
Confidence 3577777787654 35677777777777665 6666777777776654
No 24
>PF06196 DUF997: Protein of unknown function (DUF997); InterPro: IPR010398 This is a family of predicted bacterial membrane protein with unknown function.
Probab=25.97 E-value=1.5e+02 Score=19.12 Aligned_cols=34 Identities=15% Similarity=0.146 Sum_probs=25.2
Q ss_pred ccCCCCchhhhhhHHHHHHHHHHHHHHHHhhhhcCe
Q psy9699 8 FTPVKRFEPVLIMCVTTYFLMMGILTLYTTYKEKGI 43 (123)
Q Consensus 8 ~~~f~~sk~~l~~~V~~YfiLsgilt~~~~~vEK~~ 43 (123)
-.|+| -.....|++.+.++..+.++..+++=||+
T Consensus 39 i~GlP--lWF~~SCi~~~il~~~l~~~~vk~~Fkd~ 72 (80)
T PF06196_consen 39 IFGLP--LWFFYSCIGGPILFIILVWLMVKFFFKDI 72 (80)
T ss_pred ccCCc--HHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 34444 35667788899998888888888876664
No 25
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=25.63 E-value=60 Score=14.37 Aligned_cols=17 Identities=12% Similarity=0.083 Sum_probs=11.8
Q ss_pred ccCceechHhHHHHHHH
Q psy9699 95 DETGLLLPDLVENDVSR 111 (123)
Q Consensus 95 d~~G~l~~~~f~~~l~~ 111 (123)
|.+|.+..+.|...+..
T Consensus 12 ~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 12 DGDGKIDFEEFKDLLKA 28 (29)
T ss_pred CCCCcEeHHHHHHHHHh
Confidence 34578888877777654
No 26
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=25.26 E-value=74 Score=15.57 Aligned_cols=14 Identities=14% Similarity=0.081 Sum_probs=10.8
Q ss_pred ccCceechHhHHHH
Q psy9699 95 DETGLLLPDLVEND 108 (123)
Q Consensus 95 d~~G~l~~~~f~~~ 108 (123)
|.||.+..+.|.+.
T Consensus 11 d~DG~is~~E~~~~ 24 (25)
T PF13202_consen 11 DGDGKISFEEFQRL 24 (25)
T ss_dssp TSSSEEEHHHHHHH
T ss_pred CCCCcCCHHHHHHH
Confidence 66899988887763
No 27
>TIGR02690 resist_ArsH arsenical resistance protein ArsH. Members of this protein family occur in arsenate resistance operons that include at least two different types of arsenate reductase. ArsH is not required for arsenate resistance in some systems. This family belongs to the larger family of NADPH-dependent FMN reductases (Pfam model pfam03358). The function of ArsH is not known.
Probab=25.18 E-value=72 Score=24.38 Aligned_cols=24 Identities=25% Similarity=0.396 Sum_probs=21.4
Q ss_pred eccCceechHhHHHHHHHHHHHHh
Q psy9699 94 FDETGLLLPDLVENDVSRLHNSIL 117 (123)
Q Consensus 94 Fd~~G~l~~~~f~~~l~~l~~~l~ 117 (123)
||++|.+..+...+.+..+++++.
T Consensus 174 fd~~G~l~d~~~~~~l~~~l~~~~ 197 (219)
T TIGR02690 174 FDEAGRMKPSDYYDRVVDVMEELT 197 (219)
T ss_pred cCcCCCCCCHHHHHHHHHHHHHHH
Confidence 999999999999998888888765
No 28
>PF09926 DUF2158: Uncharacterized small protein (DUF2158); InterPro: IPR019226 This entry represents a family of predominantly prokaryotic proteins with no known function.
Probab=24.37 E-value=27 Score=20.93 Aligned_cols=18 Identities=22% Similarity=0.407 Sum_probs=13.0
Q ss_pred ccceeccCceechHhHHHH
Q psy9699 90 VANYFDETGLLLPDLVEND 108 (123)
Q Consensus 90 v~~~Fd~~G~l~~~~f~~~ 108 (123)
.=.|||.+|. +++.|..+
T Consensus 33 ~C~WFd~~~~-~~~~F~~~ 50 (53)
T PF09926_consen 33 ECQWFDGHGE-QRETFPED 50 (53)
T ss_pred EEEeCCCCCc-cccccChH
Confidence 3569999998 77666543
No 29
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=22.93 E-value=71 Score=25.01 Aligned_cols=25 Identities=16% Similarity=0.195 Sum_probs=21.0
Q ss_pred ccceeccCceechHhHHHHHHHHHH
Q psy9699 90 VANYFDETGLLLPDLVENDVSRLHN 114 (123)
Q Consensus 90 v~~~Fd~~G~l~~~~f~~~l~~l~~ 114 (123)
.-.-||+||.++.+.+.+.++.+++
T Consensus 13 ~vTPf~~dg~iD~~~l~~li~~l~~ 37 (296)
T TIGR03249 13 PVTPFDADGSFDEAAYRENIEWLLG 37 (296)
T ss_pred eeCCcCCCCCcCHHHHHHHHHHHHh
Confidence 3345899999999999999988875
No 30
>PRK15100 amino acid ABC transporter permease; Provisional
Probab=22.70 E-value=1e+02 Score=22.83 Aligned_cols=28 Identities=14% Similarity=0.244 Sum_probs=23.3
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHhhhhcC
Q psy9699 15 EPVLIMCVTTYFLMMGILTLYTTYKEKG 42 (123)
Q Consensus 15 k~~l~~~V~~YfiLsgilt~~~~~vEK~ 42 (123)
.....++.++|++++.++.......||-
T Consensus 186 ~~~~~~~~~~~~~l~~~~~~~~~~l~~~ 213 (220)
T PRK15100 186 FTMYLAASLIYWIMATVLSALQNRFENQ 213 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667788999999999999999975
No 31
>COG3215 PilZ Tfp pilus assembly protein PilZ [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=22.68 E-value=1.6e+02 Score=20.39 Aligned_cols=83 Identities=13% Similarity=0.118 Sum_probs=48.1
Q ss_pred HHHHHHHHhhhhcCeEEEEE-eC---CcEEEEEeecCCCCceeEEE--EEEEeCCCCeeeeEEEeeeccceeccCceech
Q psy9699 29 MGILTLYTTYKEKGIFAVAK-KD---HIVWEASSYLKKYDDMYNLV--LQYKDTKTGVTRSEQFNKSVANYFDETGLLLP 102 (123)
Q Consensus 29 sgilt~~~~~vEK~~~yvg~-k~---~~~i~isS~~~k~~p~Y~l~--l~~~~~~~~~~~~~~~~~~v~~~Fd~~G~l~~ 102 (123)
++++..|+.|.|.|-+||-+ +. |+.+-.--++..+...|.|- +.-..+.+.++|..-+-..+++ +++|.-+.
T Consensus 20 a~LYsaYMpfl~nGglFVpTnk~y~iG~evfl~l~lld~pekl~vagkVaWitP~gt~sr~~GiGv~f~d--~e~g~~vr 97 (117)
T COG3215 20 ALLYSAYMPFLENGGLFVPTNKVYSIGEEVFLLLELLDFPEKLPVAGKVAWITPVGTQSRPAGIGVQFTD--GENGLKVR 97 (117)
T ss_pred HHHHHHHhHHHhcCcEEcccCCccccchhhhhhhhhcCchhhccccceEEEEccCCCCCCCCceeeeccC--CCchhhHH
Confidence 45667789999998888877 44 55555554444444444442 1122222222344444445554 67777777
Q ss_pred HhHHHHHHHHH
Q psy9699 103 DLVENDVSRLH 113 (123)
Q Consensus 103 ~~f~~~l~~l~ 113 (123)
+..+..+...+
T Consensus 98 ~~IE~~Lg~~i 108 (117)
T COG3215 98 NQIETLLGGTI 108 (117)
T ss_pred HHHHHHHHhhc
Confidence 77776666554
No 32
>CHL00005 rps16 ribosomal protein S16
Probab=22.42 E-value=2.3e+02 Score=18.42 Aligned_cols=52 Identities=12% Similarity=0.115 Sum_probs=31.1
Q ss_pred EEEEeecCCCCceeEEEEEEEeC-CCCeeeeEEEeeeccceecc---CceechHhHHHHHHH
Q psy9699 54 WEASSYLKKYDDMYNLVLQYKDT-KTGVTRSEQFNKSVANYFDE---TGLLLPDLVENDVSR 111 (123)
Q Consensus 54 i~isS~~~k~~p~Y~l~l~~~~~-~~~~~~~~~~~~~v~~~Fd~---~G~l~~~~f~~~l~~ 111 (123)
|+.+=.=.|..|.|++.+..... ..|+.. +.-. +||. .-.+..+....|+++
T Consensus 4 IRL~R~G~kk~P~YrIVvadsr~~RdGk~i--E~lG----~YnP~~~~~~ln~eri~~Wl~~ 59 (82)
T CHL00005 4 LRLKRCGRKQQAVYRIVAIDVRSRREGRDL--EKVG----FYDPIKNQTYLNVPAILYFLEK 59 (82)
T ss_pred EecccCCCCCCCeEEEEEEeCCCCCCCcce--eEee----eccCCCcccEEeHHHHHHHHHC
Confidence 44444446899999999875432 333322 1111 2332 348888999999875
No 33
>PF11295 DUF3096: Protein of unknown function (DUF3096); InterPro: IPR021446 This entry is represented by the archaeal Thermoproteus tenax spherical virus 1, Orf18. The characteristics of the protein distribution suggest prophage matches and lateral genetic transfer in addition to the phage matches.
Probab=21.80 E-value=1.3e+02 Score=16.95 Aligned_cols=20 Identities=30% Similarity=0.702 Sum_probs=15.9
Q ss_pred hhhhHHHHHHHHHHHHHHHH
Q psy9699 17 VLIMCVTTYFLMMGILTLYT 36 (123)
Q Consensus 17 ~l~~~V~~YfiLsgilt~~~ 36 (123)
++-..|++|.++-|++-+..
T Consensus 17 llnyiVaiyLI~~G~lgL~~ 36 (39)
T PF11295_consen 17 LLNYIVAIYLIVIGLLGLFG 36 (39)
T ss_pred HHHHHHHHHHHHHHHHHhhh
Confidence 45567899999999987764
No 34
>PF11396 DUF2874: Protein of unknown function (DUF2874); InterPro: IPR021533 This bacterial family of proteins are probable periplasmic proteins with unknown function. There are between one and four copies of this domain per sequence. ; PDB: 3DUE_A 3U1W_B 3DB7_A 4DSD_A 3ELG_A.
Probab=21.49 E-value=1.4e+02 Score=17.17 Aligned_cols=24 Identities=29% Similarity=0.636 Sum_probs=13.9
Q ss_pred ceeEEEEEEEeCCCCeeeeEEEeeeccceeccCcee
Q psy9699 65 DMYNLVLQYKDTKTGVTRSEQFNKSVANYFDETGLL 100 (123)
Q Consensus 65 p~Y~l~l~~~~~~~~~~~~~~~~~~v~~~Fd~~G~l 100 (123)
..|.+.+. .++. +.+ =+||++|.+
T Consensus 37 ~~Y~v~l~-~~~~-------~~~----v~fd~~G~~ 60 (61)
T PF11396_consen 37 KYYEVELK-KGGN-------EYE----VYFDANGNW 60 (61)
T ss_dssp EEEEEEET-ETTT-------SEE----EEEETTS-E
T ss_pred CEEEEEEE-EeCC-------eEE----EEEcCCCCC
Confidence 77888776 2221 111 279999976
No 35
>TIGR03592 yidC_oxa1_cterm membrane protein insertase, YidC/Oxa1 family, C-terminal domain. This model describes full-length from some species, and the C-terminal region only from other species, of the YidC/Oxa1 family of proteins. This domain appears to be univeral among bacteria (although absent from Archaea). The well-characterized YidC protein from Escherichia coli and its close homologs contain a large N-terminal periplasmic domain in addition to the region modeled here.
Probab=21.17 E-value=1.1e+02 Score=22.21 Aligned_cols=20 Identities=10% Similarity=0.316 Sum_probs=15.8
Q ss_pred hHHHHHHHHHHHHHHHHhhh
Q psy9699 20 MCVTTYFLMMGILTLYTTYK 39 (123)
Q Consensus 20 ~~V~~YfiLsgilt~~~~~v 39 (123)
.++.+|++.|+++++...++
T Consensus 159 a~l~lYw~~s~~~sl~Q~~~ 178 (181)
T TIGR03592 159 AGLVLYWVVSNLFTIIQQLI 178 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 46778999999998887654
No 36
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=20.56 E-value=84 Score=24.69 Aligned_cols=25 Identities=8% Similarity=0.076 Sum_probs=21.0
Q ss_pred ccceeccCceechHhHHHHHHHHHH
Q psy9699 90 VANYFDETGLLLPDLVENDVSRLHN 114 (123)
Q Consensus 90 v~~~Fd~~G~l~~~~f~~~l~~l~~ 114 (123)
+-.-||+||.++.+.+.+.++.+++
T Consensus 8 ~~TPf~~dg~iD~~~l~~lv~~~~~ 32 (294)
T TIGR02313 8 LITPFKRNGDIDEEALRELIEFQIE 32 (294)
T ss_pred eeCCcCCCCCcCHHHHHHHHHHHHH
Confidence 3445999999999999999988875
No 37
>PF07981 Plasmod_MYXSPDY: Plasmodium repeat_MYXSPDY; InterPro: IPR012598 This repeat is found in two hypothetical Plasmodium proteins.
Probab=20.48 E-value=82 Score=14.50 Aligned_cols=11 Identities=27% Similarity=0.395 Sum_probs=8.5
Q ss_pred CCceeEEEEEE
Q psy9699 63 YDDMYNLVLQY 73 (123)
Q Consensus 63 ~~p~Y~l~l~~ 73 (123)
++|-|+|.+..
T Consensus 3 ~SPdytL~~v~ 13 (17)
T PF07981_consen 3 FSPDYTLRLVQ 13 (17)
T ss_pred cCCCceEEEEe
Confidence 57999998753
No 38
>PF07661 MORN_2: MORN repeat variant; InterPro: IPR011652 This entry represents an apparent variant of the IPR003409 from INTERPRO repeat.
Probab=20.27 E-value=42 Score=15.32 Aligned_cols=12 Identities=25% Similarity=0.606 Sum_probs=8.9
Q ss_pred ceeccCceechH
Q psy9699 92 NYFDETGLLLPD 103 (123)
Q Consensus 92 ~~Fd~~G~l~~~ 103 (123)
..|+++|.+...
T Consensus 6 ~~yy~nG~l~~~ 17 (22)
T PF07661_consen 6 KFYYENGKLKSE 17 (22)
T ss_pred EEEeCCCCEEEE
Confidence 468888888654
Done!