Query psy9699
Match_columns 123
No_of_seqs 105 out of 199
Neff 6.7
Searched_HMMs 29240
Date Fri Aug 16 17:20:55 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9699.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9699hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u7r_A NADPH-dependent FMN red 50.3 12 0.0004 26.6 3.0 29 90-118 148-176 (190)
2 4hs4_A Chromate reductase; tri 24.3 57 0.0019 22.9 3.0 29 90-118 153-182 (199)
3 2h2k_A Protein S100-A13; calci 22.5 74 0.0025 20.0 3.0 26 95-120 74-99 (106)
4 3svl_A Protein YIEF; E. coli C 21.8 75 0.0026 22.1 3.2 29 90-118 152-181 (193)
5 3tak_A DHDPS, dihydrodipicolin 21.6 58 0.002 24.3 2.7 25 90-114 9-33 (291)
6 2ojp_A DHDPS, dihydrodipicolin 20.8 62 0.0021 24.2 2.7 27 89-115 8-34 (292)
7 3l21_A DHDPS, dihydrodipicolin 20.7 54 0.0019 24.8 2.4 26 89-114 22-47 (304)
8 4a8j_B Elongator complex prote 20.2 1.3E+02 0.0046 22.9 4.4 25 63-88 198-222 (270)
9 3fkr_A L-2-keto-3-deoxyarabona 20.1 56 0.0019 24.8 2.3 26 89-114 15-40 (309)
10 3a5f_A Dihydrodipicolinate syn 20.1 58 0.002 24.3 2.4 26 89-115 9-34 (291)
No 1
>3u7r_A NADPH-dependent FMN reductase; alpha/beta twisted open-sheet, lavoprotein, quinone reductas oxidoreductase; HET: MSE FNR 2PE; 1.40A {Paracoccus denitrificans}
Probab=50.34 E-value=12 Score=26.62 Aligned_cols=29 Identities=7% Similarity=0.139 Sum_probs=23.5
Q ss_pred ccceeccCceechHhHHHHHHHHHHHHhh
Q psy9699 90 VANYFDETGLLLPDLVENDVSRLHNSILA 118 (123)
Q Consensus 90 v~~~Fd~~G~l~~~~f~~~l~~l~~~l~~ 118 (123)
..+-||++|.+..+...+.++++++++..
T Consensus 148 ~~~~fd~~G~l~de~~~~~l~~~~~~~~~ 176 (190)
T 3u7r_A 148 HAEAYAADGSVTDEKTAKFLQGFVDAFVD 176 (190)
T ss_dssp CGGGBCTTSCBCSHHHHHHHHHHHHHHHH
T ss_pred cHhcCCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 45679999999988888888888887653
No 2
>4hs4_A Chromate reductase; triple-layered, A/B/A structure, NAD(P)H-dependent FMN reduc oxidoreductase; HET: FMN; 2.10A {Gluconacetobacter hansenii} PDB: 3s2y_A* 4h6p_A*
Probab=24.25 E-value=57 Score=22.89 Aligned_cols=29 Identities=17% Similarity=0.062 Sum_probs=23.1
Q ss_pred ccceeccC-ceechHhHHHHHHHHHHHHhh
Q psy9699 90 VANYFDET-GLLLPDLVENDVSRLHNSILA 118 (123)
Q Consensus 90 v~~~Fd~~-G~l~~~~f~~~l~~l~~~l~~ 118 (123)
+.+-||++ |.+..+...+.+.++++++..
T Consensus 153 ~~~~fd~~~g~l~d~~~~~~l~~~~~~l~~ 182 (199)
T 4hs4_A 153 VTGKVDAQTLELSDVATREFLARQLDALAA 182 (199)
T ss_dssp GGGTBCSSSCCBCCHHHHHHHHHHHHHHHH
T ss_pred hhhhcCCcCCCcCCHHHHHHHHHHHHHHHH
Confidence 34669986 999988888888888887754
No 3
>2h2k_A Protein S100-A13; calcium binding protein, metal binding protein; 2.00A {Homo sapiens} PDB: 1yur_A 1yus_A 1yut_A 1yuu_A 2egd_A 2k8m_B 2ki4_B* 2ki6_C* 2kot_A* 2l5x_B 2cxj_A
Probab=22.49 E-value=74 Score=19.99 Aligned_cols=26 Identities=15% Similarity=0.051 Sum_probs=19.9
Q ss_pred ccCceechHhHHHHHHHHHHHHhhhh
Q psy9699 95 DETGLLLPDLVENDVSRLHNSILAEK 120 (123)
Q Consensus 95 d~~G~l~~~~f~~~l~~l~~~l~~~k 120 (123)
|.||.+..+.|...+.........+|
T Consensus 74 d~dG~Idf~EF~~~~~~~~~~~~~ek 99 (106)
T 2h2k_A 74 NQDSELKFNEYWRLIGELAKEIRKKK 99 (106)
T ss_dssp TCSSSEEHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCcHHHHHHHHHHHHHHhhHHH
Confidence 45789999999999888776655444
No 4
>3svl_A Protein YIEF; E. coli CHRR enzyme, chromate bioremediation, tetramer role, mutant enzymes, oxidoreductase; HET: FMN; 2.20A {Escherichia coli}
Probab=21.79 E-value=75 Score=22.07 Aligned_cols=29 Identities=10% Similarity=0.116 Sum_probs=22.7
Q ss_pred ccceeccC-ceechHhHHHHHHHHHHHHhh
Q psy9699 90 VANYFDET-GLLLPDLVENDVSRLHNSILA 118 (123)
Q Consensus 90 v~~~Fd~~-G~l~~~~f~~~l~~l~~~l~~ 118 (123)
+.+=||++ |.+..+...+.+.++++.+..
T Consensus 152 ~~~~f~~~~g~l~d~~~~~~l~~~~~~~~~ 181 (193)
T 3svl_A 152 IQNKVDPQTGEVIDQGTLDHLTGQLTAFGE 181 (193)
T ss_dssp GGGGEETTTTEECCHHHHHHHHHHHHHHHH
T ss_pred hhhhcCCCCCcCCCHHHHHHHHHHHHHHHH
Confidence 34567876 999988888888888887754
No 5
>3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A
Probab=21.60 E-value=58 Score=24.32 Aligned_cols=25 Identities=12% Similarity=-0.080 Sum_probs=21.3
Q ss_pred ccceeccCceechHhHHHHHHHHHH
Q psy9699 90 VANYFDETGLLLPDLVENDVSRLHN 114 (123)
Q Consensus 90 v~~~Fd~~G~l~~~~f~~~l~~l~~ 114 (123)
+-.-||+||.++.+.+.+.++.+++
T Consensus 9 ~vTPf~~dg~iD~~~l~~lv~~li~ 33 (291)
T 3tak_A 9 IVTPMLKDGGVDWKSLEKLVEWHIE 33 (291)
T ss_dssp CCCCBCTTSCBCHHHHHHHHHHHHH
T ss_pred eECCCCCCCCcCHHHHHHHHHHHHH
Confidence 3445999999999999999998875
No 6
>2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A
Probab=20.83 E-value=62 Score=24.19 Aligned_cols=27 Identities=15% Similarity=0.149 Sum_probs=22.2
Q ss_pred eccceeccCceechHhHHHHHHHHHHH
Q psy9699 89 SVANYFDETGLLLPDLVENDVSRLHNS 115 (123)
Q Consensus 89 ~v~~~Fd~~G~l~~~~f~~~l~~l~~~ 115 (123)
++-.-||+||.++.+.+.+.++.+++.
T Consensus 8 a~vTPf~~dg~iD~~~l~~lv~~li~~ 34 (292)
T 2ojp_A 8 AIVTPMDEKGNVCRASLKKLIDYHVAS 34 (292)
T ss_dssp ECCCCBCTTSCBCHHHHHHHHHHHHHH
T ss_pred eeeccCCCCCCcCHHHHHHHHHHHHHc
Confidence 334458999999999999999988764
No 7
>3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A
Probab=20.72 E-value=54 Score=24.76 Aligned_cols=26 Identities=15% Similarity=0.157 Sum_probs=22.1
Q ss_pred eccceeccCceechHhHHHHHHHHHH
Q psy9699 89 SVANYFDETGLLLPDLVENDVSRLHN 114 (123)
Q Consensus 89 ~v~~~Fd~~G~l~~~~f~~~l~~l~~ 114 (123)
++-.-||+||.++.+.+.+.++.+++
T Consensus 22 a~vTPf~~dg~iD~~~l~~lv~~li~ 47 (304)
T 3l21_A 22 AMVTPFSGDGSLDTATAARLANHLVD 47 (304)
T ss_dssp ECCCCBCTTSCBCHHHHHHHHHHHHH
T ss_pred EEECCCCCCCCcCHHHHHHHHHHHHH
Confidence 44456999999999999999998875
No 8
>4a8j_B Elongator complex protein 5; transcription; 2.10A {Saccharomyces cerevisiae} PDB: 4ejs_B
Probab=20.23 E-value=1.3e+02 Score=22.85 Aligned_cols=25 Identities=28% Similarity=0.392 Sum_probs=18.8
Q ss_pred CCceeEEEEEEEeCCCCeeeeEEEee
Q psy9699 63 YDDMYNLVLQYKDTKTGVTRSEQFNK 88 (123)
Q Consensus 63 ~~p~Y~l~l~~~~~~~~~~~~~~~~~ 88 (123)
+.|+|+|+++.++ |+||+.+..+..
T Consensus 198 N~~~f~l~ltnrR-KSGRsl~y~f~i 222 (270)
T 4a8j_B 198 NNDIFQLRLVNKR-KSGRSLEYDFIV 222 (270)
T ss_dssp SCSEEEEEEEEEC-TTSCEEEEEEEE
T ss_pred CCCeEEEEEEecc-ccCcceEEEEEE
Confidence 6899999999876 577776655543
No 9
>3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A
Probab=20.15 E-value=56 Score=24.77 Aligned_cols=26 Identities=23% Similarity=0.185 Sum_probs=22.0
Q ss_pred eccceeccCceechHhHHHHHHHHHH
Q psy9699 89 SVANYFDETGLLLPDLVENDVSRLHN 114 (123)
Q Consensus 89 ~v~~~Fd~~G~l~~~~f~~~l~~l~~ 114 (123)
++-.-||+||.++.+.+.+.++.+++
T Consensus 15 a~vTPf~~dg~iD~~~l~~lv~~li~ 40 (309)
T 3fkr_A 15 VVPTTFADTGDLDLASQKRAVDFMID 40 (309)
T ss_dssp BCCCCBCTTSSBCHHHHHHHHHHHHH
T ss_pred eeeCCCCcCCCcCHHHHHHHHHHHHH
Confidence 44456999999999999999998875
No 10
>3a5f_A Dihydrodipicolinate synthase; TIM barrel, enzyme, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; HET: KPI; 1.19A {Clostridium botulinum A} PDB: 3bi8_A* 3ird_A*
Probab=20.14 E-value=58 Score=24.32 Aligned_cols=26 Identities=19% Similarity=0.180 Sum_probs=20.9
Q ss_pred eccceeccCceechHhHHHHHHHHHHH
Q psy9699 89 SVANYFDETGLLLPDLVENDVSRLHNS 115 (123)
Q Consensus 89 ~v~~~Fd~~G~l~~~~f~~~l~~l~~~ 115 (123)
++-.-||+|| ++.+.+.+.++.+++.
T Consensus 9 a~vTPf~~dg-iD~~~l~~lv~~li~~ 34 (291)
T 3a5f_A 9 AIITPFTNTG-VDFDKLSELIEWHIKS 34 (291)
T ss_dssp ECCCCBCSSS-BCHHHHHHHHHHHHHT
T ss_pred eeEcCcCCCC-cCHHHHHHHHHHHHHc
Confidence 3344589999 9999999999988763
Done!