RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy9699
         (123 letters)



>d2c78a1 b.43.3.1 (A:213-312) Elongation factor Tu (EF-Tu), domain 2
           {Thermus thermophilus [TaxId: 274]}
          Length = 100

 Score = 26.8 bits (59), Expect = 0.36
 Identities = 25/104 (24%), Positives = 41/104 (39%), Gaps = 18/104 (17%)

Query: 10  PVKRFEPVLIMCVTTYFLMMGILTLYTTYKEKGIFAVAKKDHIVWEASSYLKKYDDMYNL 69
           PV+  +   +M V   F + G  T+ T   E+G                 +K  D++  +
Sbjct: 1   PVRDVDKPFLMPVEDVFTITGRGTVATGRIERGK----------------VKVGDEVEIV 44

Query: 70  VLQYKDTKTGVTRSEQFNKSV--ANYFDETGLLLPDLVENDVSR 111
            L  +  KT VT  E   K++      D  G+LL  +   +V R
Sbjct: 45  GLAPETRKTVVTGVEMHRKTLQEGIAGDNVGVLLRGVSREEVER 88


>d2anua1 c.6.3.1 (A:5-233) Hypothetical protein TM0559 {Thermotoga
           maritima [TaxId: 2336]}
          Length = 229

 Score = 25.0 bits (53), Expect = 3.0
 Identities = 18/90 (20%), Positives = 35/90 (38%), Gaps = 3/90 (3%)

Query: 34  LYTTYKEKGIFAVAKKDHIVWEASSYLKKYDDMYNLVLQYKDTKTGVTRSEQFNKSVANY 93
           +   + + G+  V+  DHIV   +   +K +      +     +  + R  +  K     
Sbjct: 24  VVDLFGKHGVDVVSITDHIVDRRTLEQRKRNGEPLGAITEDKFQDYLKRLWREQKRAW-- 81

Query: 94  FDETGLLLPDLVENDVSRLHNSILAEKKKE 123
            +E G++L   VE   +     I+A   KE
Sbjct: 82  -EEYGMILIPGVEITNNTDLYHIVAVDVKE 110


>d1eg7a_ c.37.1.10 (A:) Formyltetrahydrofolate synthetase {Moorella
           thermoacetica [TaxId: 1525]}
          Length = 549

 Score = 24.4 bits (53), Expect = 5.1
 Identities = 9/27 (33%), Positives = 14/27 (51%)

Query: 66  MYNLVLQYKDTKTGVTRSEQFNKSVAN 92
           + N+V+       GV R   F+ SVA+
Sbjct: 171 LRNIVIGLGGKANGVPRETGFDISVAS 197


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.136    0.403 

Gapped
Lambda     K      H
   0.267   0.0606    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 444,392
Number of extensions: 18057
Number of successful extensions: 35
Number of sequences better than 10.0: 1
Number of HSP's gapped: 35
Number of HSP's successfully gapped: 6
Length of query: 123
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 48
Effective length of database: 1,377,846
Effective search space: 66136608
Effective search space used: 66136608
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.1 bits)