BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy97
(339 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2QAG|C Chain C, Crystal Structure Of Human Septin Trimer 267
Length = 418
Score = 177 bits (449), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 89/185 (48%), Positives = 119/185 (64%), Gaps = 14/185 (7%)
Query: 138 EVAGTKVLIIFYF------SLRQIDIETMRRLHHKVNIVPLIAKADTLTSAEVXXXXXXX 191
++ +V YF L+ +DIE M+RLH KVNI+PLIAKADTLT E
Sbjct: 133 QMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHEKVNIIPLIAKADTLTPEECQQFKKQI 192
Query: 192 XEDIEENQIQIYQFPECDSXXXXXXXXXXXXXXXSVPFAIIGSNTVIEVAGTKVRGRQYP 251
++I+E++I+IY+FPE D +P A++GSNT+IEV G +VRGRQYP
Sbjct: 193 MKEIQEHKIKIYEFPETDDEEENKLVKKIKD---RLPLAVVGSNTIIEVNGKRVRGRQYP 249
Query: 252 WGVVEVENPKHSDFNKLRNMLISTHMQDLKDVTEDVHYENFRAQCLSQISQRG-----DR 306
WGV EVEN +H DF LRNMLI THMQDLKDVT +VHYEN+R++ L+ ++ G ++
Sbjct: 250 WGVAEVENGEHCDFTILRNMLIRTHMQDLKDVTNNVHYENYRSRKLAAVTYNGVDNNKNK 309
Query: 307 GKLKK 311
G+L K
Sbjct: 310 GQLTK 314
Score = 87.8 bits (216), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 46/111 (41%), Positives = 66/111 (59%), Gaps = 7/111 (6%)
Query: 38 ENQIQVLIIFY----FSLRQIDIETMRRLHHKVNIVPLIAKADTLTSAEVXXXXXXXXED 93
+N++Q + F L+ +DIE M+RLH KVNI+PLIAKADTLT E ++
Sbjct: 136 DNRVQCCLYFIAPSGHGLKPLDIEFMKRLHEKVNIIPLIAKADTLTPEECQQFKKQIMKE 195
Query: 94 IEENQIQIYQFPECDSXXXXXXXXXXXXXXXSVPFAIIGSNTVIEVAGTKV 144
I+E++I+IY+FPE D +P A++GSNT+IEV G +V
Sbjct: 196 IQEHKIKIYEFPETDD---EEENKLVKKIKDRLPLAVVGSNTIIEVNGKRV 243
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 31/43 (72%)
Query: 1 MRRLHHKVNIVPLIAKADTLTSAEVXXXXXXXXEDIEENQIQV 43
M+RLH KVNI+PLIAKADTLT E ++I+E++I++
Sbjct: 161 MKRLHEKVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHKIKI 203
>pdb|3TW4|A Chain A, Crystal Structure Of Human Septin 7 Gtpase Domain
pdb|3TW4|B Chain B, Crystal Structure Of Human Septin 7 Gtpase Domain
Length = 271
Score = 173 bits (438), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 85/170 (50%), Positives = 112/170 (65%), Gaps = 9/170 (5%)
Query: 138 EVAGTKVLIIFYF------SLRQIDIETMRRLHHKVNIVPLIAKADTLTSAEVXXXXXXX 191
++ +V YF L+ +DIE M+RLH KVNI+PLIAKADTLT E
Sbjct: 105 QMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHEKVNIIPLIAKADTLTPEECQQFKKQI 164
Query: 192 XEDIEENQIQIYQFPECDSXXXXXXXXXXXXXXXSVPFAIIGSNTVIEVAGTKVRGRQYP 251
++I+E++I+IY+FPE D +P A++GSNT+IEV G +VRGRQYP
Sbjct: 165 MKEIQEHKIKIYEFPETDDEEENKLVKKIKD---RLPLAVVGSNTIIEVNGKRVRGRQYP 221
Query: 252 WGVVEVENPKHSDFNKLRNMLISTHMQDLKDVTEDVHYENFRAQCLSQIS 301
WGV EVEN +H DF LRNMLI THMQDLKDVT +VHYEN+R++ L+ ++
Sbjct: 222 WGVAEVENGEHCDFTILRNMLIRTHMQDLKDVTNNVHYENYRSRKLAAVT 271
Score = 87.0 bits (214), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 46/113 (40%), Positives = 67/113 (59%), Gaps = 7/113 (6%)
Query: 36 IEENQIQVLIIFY----FSLRQIDIETMRRLHHKVNIVPLIAKADTLTSAEVXXXXXXXX 91
+ +N++Q + F L+ +DIE M+RLH KVNI+PLIAKADTLT E
Sbjct: 106 MPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHEKVNIIPLIAKADTLTPEECQQFKKQIM 165
Query: 92 EDIEENQIQIYQFPECDSXXXXXXXXXXXXXXXSVPFAIIGSNTVIEVAGTKV 144
++I+E++I+IY+FPE D +P A++GSNT+IEV G +V
Sbjct: 166 KEIQEHKIKIYEFPETDD---EEENKLVKKIKDRLPLAVVGSNTIIEVNGKRV 215
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 31/43 (72%)
Query: 1 MRRLHHKVNIVPLIAKADTLTSAEVXXXXXXXXEDIEENQIQV 43
M+RLH KVNI+PLIAKADTLT E ++I+E++I++
Sbjct: 133 MKRLHEKVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHKIKI 175
>pdb|3T5D|A Chain A, Crystal Structure Of Septin 7 In Complex With Gdp
pdb|3T5D|C Chain C, Crystal Structure Of Septin 7 In Complex With Gdp
Length = 274
Score = 171 bits (434), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 85/167 (50%), Positives = 110/167 (65%), Gaps = 9/167 (5%)
Query: 138 EVAGTKVLIIFYF------SLRQIDIETMRRLHHKVNIVPLIAKADTLTSAEVXXXXXXX 191
++ +V YF L+ +DIE M+RLH KVNI+PLIAKADTLT E
Sbjct: 110 QMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHEKVNIIPLIAKADTLTPEECQQFKKQI 169
Query: 192 XEDIEENQIQIYQFPECDSXXXXXXXXXXXXXXXSVPFAIIGSNTVIEVAGTKVRGRQYP 251
++I+E++I+IY+FPE D +P A++GSNT+IEV G +VRGRQYP
Sbjct: 170 MKEIQEHKIKIYEFPETDDEEENKLVKKIKD---RLPLAVVGSNTIIEVNGKRVRGRQYP 226
Query: 252 WGVVEVENPKHSDFNKLRNMLISTHMQDLKDVTEDVHYENFRAQCLS 298
WGV EVEN +H DF LRNMLI THMQDLKDVT +VHYEN+R++ L+
Sbjct: 227 WGVAEVENGEHCDFTILRNMLIRTHMQDLKDVTNNVHYENYRSRKLA 273
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 46/113 (40%), Positives = 67/113 (59%), Gaps = 7/113 (6%)
Query: 36 IEENQIQVLIIFY----FSLRQIDIETMRRLHHKVNIVPLIAKADTLTSAEVXXXXXXXX 91
+ +N++Q + F L+ +DIE M+RLH KVNI+PLIAKADTLT E
Sbjct: 111 MPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHEKVNIIPLIAKADTLTPEECQQFKKQIM 170
Query: 92 EDIEENQIQIYQFPECDSXXXXXXXXXXXXXXXSVPFAIIGSNTVIEVAGTKV 144
++I+E++I+IY+FPE D +P A++GSNT+IEV G +V
Sbjct: 171 KEIQEHKIKIYEFPETDD---EEENKLVKKIKDRLPLAVVGSNTIIEVNGKRV 220
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 31/43 (72%)
Query: 1 MRRLHHKVNIVPLIAKADTLTSAEVXXXXXXXXEDIEENQIQV 43
M+RLH KVNI+PLIAKADTLT E ++I+E++I++
Sbjct: 138 MKRLHEKVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHKIKI 180
>pdb|2QAG|A Chain A, Crystal Structure Of Human Septin Trimer 267
Length = 361
Score = 168 bits (426), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 91/198 (45%), Positives = 124/198 (62%), Gaps = 18/198 (9%)
Query: 142 TKVLIIFYF------SLRQIDIETMRRLHHKVNIVPLIAKADTLTSAEVXXXXXXXXEDI 195
+V FYF L+ +D+ M+ +H+KVNIVP+IAKADTLT E ++I
Sbjct: 144 NRVHCCFYFISPFGHGLKPLDVAFMKAIHNKVNIVPVIAKADTLTLKERERLKKRILDEI 203
Query: 196 EENQIQIYQFPECDSXXXXXXXXXXXXXXXSVPFAIIGSNTVIEVAGTKVRGRQYPWGVV 255
EE+ I+IY P+ +S S+PF+++GSN +IE G KVRGR YPWGVV
Sbjct: 204 EEHNIKIYHLPDAESDEDEDFKEQTRLLKASIPFSVVGSNQLIEAKGKKVRGRLYPWGVV 263
Query: 256 EVENPKHSDFNKLRNMLISTHMQDLKDVTEDVHYENFRAQCLSQISQRGDRGKLKKDSAP 315
EVENP+H+DF KLR MLI THMQDL++VT+D+HYENFR++ L +RG R +D
Sbjct: 264 EVENPEHNDFLKLRTMLI-THMQDLQEVTQDLHYENFRSERL----KRGGRKVENED--- 315
Query: 316 DGLITETDRLLLEKDEEV 333
D++LLEK+ E+
Sbjct: 316 ----MNKDQILLEKEAEL 329
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 43/114 (37%), Positives = 62/114 (54%), Gaps = 6/114 (5%)
Query: 42 QVLIIFYF------SLRQIDIETMRRLHHKVNIVPLIAKADTLTSAEVXXXXXXXXEDIE 95
+V FYF L+ +D+ M+ +H+KVNIVP+IAKADTLT E ++IE
Sbjct: 145 RVHCCFYFISPFGHGLKPLDVAFMKAIHNKVNIVPVIAKADTLTLKERERLKKRILDEIE 204
Query: 96 ENQIQIYQFPECDSXXXXXXXXXXXXXXXSVPFAIIGSNTVIEVAGTKVLIIFY 149
E+ I+IY P+ +S S+PF+++GSN +IE G KV Y
Sbjct: 205 EHNIKIYHLPDAESDEDEDFKEQTRLLKASIPFSVVGSNQLIEAKGKKVRGRLY 258
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 30/43 (69%)
Query: 1 MRRLHHKVNIVPLIAKADTLTSAEVXXXXXXXXEDIEENQIQV 43
M+ +H+KVNIVP+IAKADTLT E ++IEE+ I++
Sbjct: 168 MKAIHNKVNIVPVIAKADTLTLKERERLKKRILDEIEEHNIKI 210
>pdb|3FTQ|A Chain A, Crystal Structure Of Septin 2 In Complex With Gppnhp And
Mg2+
pdb|3FTQ|B Chain B, Crystal Structure Of Septin 2 In Complex With Gppnhp And
Mg2+
pdb|3FTQ|C Chain C, Crystal Structure Of Septin 2 In Complex With Gppnhp And
Mg2+
pdb|3FTQ|D Chain D, Crystal Structure Of Septin 2 In Complex With Gppnhp And
Mg2+
Length = 274
Score = 164 bits (414), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 81/164 (49%), Positives = 109/164 (66%), Gaps = 7/164 (4%)
Query: 142 TKVLIIFYF------SLRQIDIETMRRLHHKVNIVPLIAKADTLTSAEVXXXXXXXXEDI 195
+V FYF L+ +D+ M+ +H+KVNIVP+IAKADTLT E ++I
Sbjct: 112 NRVHCCFYFISPFGHGLKPLDVAFMKAIHNKVNIVPVIAKADTLTLKERERLKKRILDEI 171
Query: 196 EENQIQIYQFPECDSXXXXXXXXXXXXXXXSVPFAIIGSNTVIEVAGTKVRGRQYPWGVV 255
EE+ I+IY P+ +S S+PF+++GSN +IE G KVRGR YPWGVV
Sbjct: 172 EEHSIKIYHLPDAESDEDEDFKEQTRLLKASIPFSVVGSNQLIEAKGKKVRGRLYPWGVV 231
Query: 256 EVENPKHSDFNKLRNMLISTHMQDLKDVTEDVHYENFRAQCLSQ 299
EVENP+H+DF KLR MLI THMQDL++VT+D+HYENFR++ L +
Sbjct: 232 EVENPEHNDFLKLRTMLI-THMQDLQEVTQDLHYENFRSERLKR 274
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 42/109 (38%), Positives = 61/109 (55%), Gaps = 6/109 (5%)
Query: 42 QVLIIFYF------SLRQIDIETMRRLHHKVNIVPLIAKADTLTSAEVXXXXXXXXEDIE 95
+V FYF L+ +D+ M+ +H+KVNIVP+IAKADTLT E ++IE
Sbjct: 113 RVHCCFYFISPFGHGLKPLDVAFMKAIHNKVNIVPVIAKADTLTLKERERLKKRILDEIE 172
Query: 96 ENQIQIYQFPECDSXXXXXXXXXXXXXXXSVPFAIIGSNTVIEVAGTKV 144
E+ I+IY P+ +S S+PF+++GSN +IE G KV
Sbjct: 173 EHSIKIYHLPDAESDEDEDFKEQTRLLKASIPFSVVGSNQLIEAKGKKV 221
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 30/43 (69%)
Query: 1 MRRLHHKVNIVPLIAKADTLTSAEVXXXXXXXXEDIEENQIQV 43
M+ +H+KVNIVP+IAKADTLT E ++IEE+ I++
Sbjct: 136 MKAIHNKVNIVPVIAKADTLTLKERERLKKRILDEIEEHSIKI 178
>pdb|2QNR|A Chain A, Human Septin 2 In Complex With Gdp
pdb|2QNR|B Chain B, Human Septin 2 In Complex With Gdp
Length = 301
Score = 157 bits (397), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 83/181 (45%), Positives = 112/181 (61%), Gaps = 11/181 (6%)
Query: 142 TKVLIIFYF------SLRQIDIETMRRLHHKVNIVPLIAKADTLTSAEVXXXXXXXXEDI 195
+V FYF L+ +D+ + +H+KVNIVP+IAKADTLT E ++I
Sbjct: 125 NRVHCCFYFISPFGHGLKPLDVAFXKAIHNKVNIVPVIAKADTLTLKERERLKKRILDEI 184
Query: 196 EENQIQIYQFPECDSXXXXXXXXXXXXXXXSVPFAIIGSNTVIEVAGTKVRGRQYPWGVV 255
EE+ I+IY P+ +S S+PF+++GSN +IE G KVRGR YPWGVV
Sbjct: 185 EEHNIKIYHLPDAESDEDEDFKEQTRLLKASIPFSVVGSNQLIEAKGKKVRGRLYPWGVV 244
Query: 256 EVENPKHSDFNKLRNMLISTHMQDLKDVTEDVHYENFRAQCLSQISQRGDRGKLKKDSAP 315
EVENP+H+DF KLR LI TH QDL++VT+D+HYENFR++ L +RG R +D
Sbjct: 245 EVENPEHNDFLKLRTXLI-THXQDLQEVTQDLHYENFRSERL----KRGGRKVENEDXNK 299
Query: 316 D 316
D
Sbjct: 300 D 300
Score = 77.8 bits (190), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 61/114 (53%), Gaps = 6/114 (5%)
Query: 42 QVLIIFYF------SLRQIDIETMRRLHHKVNIVPLIAKADTLTSAEVXXXXXXXXEDIE 95
+V FYF L+ +D+ + +H+KVNIVP+IAKADTLT E ++IE
Sbjct: 126 RVHCCFYFISPFGHGLKPLDVAFXKAIHNKVNIVPVIAKADTLTLKERERLKKRILDEIE 185
Query: 96 ENQIQIYQFPECDSXXXXXXXXXXXXXXXSVPFAIIGSNTVIEVAGTKVLIIFY 149
E+ I+IY P+ +S S+PF+++GSN +IE G KV Y
Sbjct: 186 EHNIKIYHLPDAESDEDEDFKEQTRLLKASIPFSVVGSNQLIEAKGKKVRGRLY 239
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 28/40 (70%)
Query: 4 LHHKVNIVPLIAKADTLTSAEVXXXXXXXXEDIEENQIQV 43
+H+KVNIVP+IAKADTLT E ++IEE+ I++
Sbjct: 152 IHNKVNIVPVIAKADTLTLKERERLKKRILDEIEEHNIKI 191
>pdb|2QA5|A Chain A, Crystal Structure Of Sept2 G-Domain
pdb|2QA5|B Chain B, Crystal Structure Of Sept2 G-Domain
Length = 315
Score = 157 bits (396), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 81/171 (47%), Positives = 109/171 (63%), Gaps = 11/171 (6%)
Query: 142 TKVLIIFYF------SLRQIDIETMRRLHHKVNIVPLIAKADTLTSAEVXXXXXXXXEDI 195
+V FYF L+ +D+ + +H+KVNIVP+IAKADTLT E ++I
Sbjct: 144 NRVHCCFYFISPFGHGLKPLDVAFXKAIHNKVNIVPVIAKADTLTLKERERLKKRILDEI 203
Query: 196 EENQIQIYQFPECDSXXXXXXXXXXXXXXXSVPFAIIGSNTVIEVAGTKVRGRQYPWGVV 255
EE+ I+IY P+ +S S+PF+++GSN +IE G KVRGR YPWGVV
Sbjct: 204 EEHNIKIYHLPDAESDEDEDFKEQTRLLKASIPFSVVGSNQLIEAKGKKVRGRLYPWGVV 263
Query: 256 EVENPKHSDFNKLRNMLISTHMQDLKDVTEDVHYENFRAQCLSQISQRGDR 306
EVENP+H+DF KLR LI TH QDL++VT+D+HYENFR++ L +RG R
Sbjct: 264 EVENPEHNDFLKLRTXLI-THXQDLQEVTQDLHYENFRSERL----KRGGR 309
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 61/114 (53%), Gaps = 6/114 (5%)
Query: 42 QVLIIFYF------SLRQIDIETMRRLHHKVNIVPLIAKADTLTSAEVXXXXXXXXEDIE 95
+V FYF L+ +D+ + +H+KVNIVP+IAKADTLT E ++IE
Sbjct: 145 RVHCCFYFISPFGHGLKPLDVAFXKAIHNKVNIVPVIAKADTLTLKERERLKKRILDEIE 204
Query: 96 ENQIQIYQFPECDSXXXXXXXXXXXXXXXSVPFAIIGSNTVIEVAGTKVLIIFY 149
E+ I+IY P+ +S S+PF+++GSN +IE G KV Y
Sbjct: 205 EHNIKIYHLPDAESDEDEDFKEQTRLLKASIPFSVVGSNQLIEAKGKKVRGRLY 258
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 29/42 (69%)
Query: 2 RRLHHKVNIVPLIAKADTLTSAEVXXXXXXXXEDIEENQIQV 43
+ +H+KVNIVP+IAKADTLT E ++IEE+ I++
Sbjct: 169 KAIHNKVNIVPVIAKADTLTLKERERLKKRILDEIEEHNIKI 210
>pdb|2QAG|B Chain B, Crystal Structure Of Human Septin Trimer 267
Length = 427
Score = 124 bits (311), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 66/181 (36%), Positives = 99/181 (54%), Gaps = 18/181 (9%)
Query: 142 TKVLIIFYF------SLRQIDIETMRRLHHKVNIVPLIAKADTLTSAEVXXXXXXXXEDI 195
+++ + YF SL+ +D+ TM++L KVNI+P+IAKAD ++ +E+ ++
Sbjct: 146 SRIHVCLYFIAPTGHSLKSLDLVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSEL 205
Query: 196 EENQIQIYQFPECDSXXXXXXXXXXXXXXXSVPFAIIGSNTVIEVAGTKVRGRQYPWGVV 255
N +QIYQFP D +PFA+IGS +++ +R RQYPWG V
Sbjct: 206 VSNGVQIYQFPTDDESVAEINGTMNA----HLPFAVIGSTEELKIGNKMMRARQYPWGTV 261
Query: 256 EVENPKHSDFNKLRNMLISTHMQDLKDVTEDVHYENFRAQCLSQISQRGDRGKLKKDSAP 315
+VEN H DF KLR MLI +M+DL++ T HYE +R L ++ KD+ P
Sbjct: 262 QVENEAHCDFVKLREMLIRVNMEDLREQTHTRHYELYRRCKLEEMG--------FKDTDP 313
Query: 316 D 316
D
Sbjct: 314 D 314
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 59/110 (53%), Gaps = 11/110 (10%)
Query: 42 QVLIIFYF------SLRQIDIETMRRLHHKVNIVPLIAKADTLTSAEVXXXXXXXXEDIE 95
++ + YF SL+ +D+ TM++L KVNI+P+IAKAD ++ +E+ ++
Sbjct: 147 RIHVCLYFIAPTGHSLKSLDLVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELV 206
Query: 96 ENQIQIYQFPECDSXXXXXXXXXXXXXXXSVPFAIIGSNTVIEVAGTKVL 145
N +QIYQFP D +PFA+IGS +++ G K++
Sbjct: 207 SNGVQIYQFPTDDE----SVAEINGTMNAHLPFAVIGSTEELKI-GNKMM 251
Score = 36.2 bits (82), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 27/43 (62%)
Query: 1 MRRLHHKVNIVPLIAKADTLTSAEVXXXXXXXXEDIEENQIQV 43
M++L KVNI+P+IAKAD ++ +E+ ++ N +Q+
Sbjct: 170 MKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQI 212
>pdb|3SOP|A Chain A, Crystal Structure Of Human Septin 3 Gtpase Domain
pdb|3SOP|B Chain B, Crystal Structure Of Human Septin 3 Gtpase Domain
Length = 270
Score = 123 bits (309), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 66/165 (40%), Positives = 96/165 (58%), Gaps = 7/165 (4%)
Query: 139 VAGTKVLIIFYF------SLRQIDIETMRRLHHKVNIVPLIAKADTLTSAEVXXXXXXXX 192
+ T+V YF SLR +D+E M+ L VNI+P+IAKADT+T E
Sbjct: 107 IPDTRVHCCLYFISPTGHSLRPLDLEFMKHLSKVVNIIPVIAKADTMTLEEKSEFKQRVR 166
Query: 193 EDIEENQIQIYQFPECDSXXXXXXXXXXXXXXXSVPFAIIGSNTVIEVAGTKVRGRQYPW 252
+++E N I+ Y E D S+PFA++GS+ +V G +V GR+ PW
Sbjct: 167 KELEVNGIEFYPQKEFDEDLEDKTENDKIRQE-SMPFAVVGSDKEYQVNGKRVLGRKTPW 225
Query: 253 GVVEVENPKHSDFNKLRNMLISTHMQDLKDVTEDVHYENFRAQCL 297
G++EVEN H +F LR+ +I TH+QDLK+VT ++HYE +RA+ L
Sbjct: 226 GIIEVENLNHCEFALLRDFVIRTHLQDLKEVTHNIHYETYRAKRL 270
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 51/96 (53%), Gaps = 1/96 (1%)
Query: 50 SLRQIDIETMRRLHHKVNIVPLIAKADTLTSAEVXXXXXXXXEDIEENQIQIYQFPECDS 109
SLR +D+E M+ L VNI+P+IAKADT+T E +++E N I+ Y E D
Sbjct: 125 SLRPLDLEFMKHLSKVVNIIPVIAKADTMTLEEKSEFKQRVRKELEVNGIEFYPQKEFDE 184
Query: 110 XXXXXXXXXXXXXXXSVPFAIIGSNTVIEVAGTKVL 145
S+PFA++GS+ +V G +VL
Sbjct: 185 -DLEDKTENDKIRQESMPFAVVGSDKEYQVNGKRVL 219
Score = 32.7 bits (73), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 25/42 (59%)
Query: 1 MRRLHHKVNIVPLIAKADTLTSAEVXXXXXXXXEDIEENQIQ 42
M+ L VNI+P+IAKADT+T E +++E N I+
Sbjct: 134 MKHLSKVVNIIPVIAKADTMTLEEKSEFKQRVRKELEVNGIE 175
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.374
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,526,950
Number of Sequences: 62578
Number of extensions: 237596
Number of successful extensions: 412
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 372
Number of HSP's gapped (non-prelim): 27
length of query: 339
length of database: 14,973,337
effective HSP length: 99
effective length of query: 240
effective length of database: 8,778,115
effective search space: 2106747600
effective search space used: 2106747600
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)