Query psy97
Match_columns 339
No_of_seqs 238 out of 1095
Neff 5.8
Searched_HMMs 46136
Date Fri Aug 16 17:21:31 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy97.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/97hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00735 Septin: Septin; Inte 100.0 2.6E-54 5.7E-59 412.3 15.2 186 9-303 85-278 (281)
2 KOG2655|consensus 100.0 7.1E-54 1.5E-58 417.9 17.7 170 130-302 117-293 (366)
3 COG5019 CDC3 Septin family pro 100.0 1.3E-53 2.8E-58 413.9 19.0 171 131-303 121-298 (373)
4 KOG1547|consensus 100.0 1.3E-51 2.8E-56 381.0 16.5 171 131-303 143-319 (336)
5 KOG3859|consensus 100.0 3E-51 6.6E-56 384.9 10.3 195 138-338 142-347 (406)
6 cd01850 CDC_Septin CDC/Septin. 100.0 4.9E-44 1.1E-48 340.5 17.1 162 137-300 108-275 (276)
7 COG5019 CDC3 Septin family pro 100.0 1.8E-34 4E-39 280.5 14.3 167 8-196 103-284 (373)
8 KOG2655|consensus 100.0 4.2E-34 9E-39 279.3 10.2 142 8-157 100-250 (366)
9 KOG1547|consensus 100.0 5.6E-33 1.2E-37 257.4 12.9 135 9-150 126-267 (336)
10 KOG3859|consensus 100.0 2.6E-29 5.5E-34 237.0 5.2 152 9-168 117-282 (406)
11 cd01850 CDC_Septin CDC/Septin. 99.9 4.4E-23 9.6E-28 196.6 12.1 143 9-156 85-233 (276)
12 PF00735 Septin: Septin; Inte 99.8 9.7E-20 2.1E-24 174.4 6.3 71 137-207 107-183 (281)
13 cd01876 YihA_EngB The YihA (En 84.1 3.7 8E-05 33.9 6.5 55 50-104 94-151 (170)
14 cd01876 YihA_EngB The YihA (En 81.8 5.5 0.00012 32.9 6.7 53 153-205 96-151 (170)
15 PRK00089 era GTPase Era; Revie 80.0 19 0.00041 34.1 10.5 123 152-287 98-256 (292)
16 PRK13768 GTPase; Provisional 79.7 3.8 8.2E-05 38.7 5.5 42 50-91 141-188 (253)
17 TIGR03598 GTPase_YsxC ribosome 79.3 4.7 0.0001 35.2 5.7 56 43-98 101-162 (179)
18 cd01853 Toc34_like Toc34-like 78.5 4.7 0.0001 38.2 5.8 42 143-184 114-167 (249)
19 cd04104 p47_IIGP_like p47 (47- 78.2 13 0.00028 33.3 8.3 33 151-183 91-124 (197)
20 cd01852 AIG1 AIG1 (avrRpt2-ind 74.6 6 0.00013 35.2 5.1 67 142-208 82-162 (196)
21 cd01852 AIG1 AIG1 (avrRpt2-ind 73.9 6 0.00013 35.2 4.9 67 39-107 82-162 (196)
22 cd04165 GTPBP1_like GTPBP1-lik 73.9 11 0.00023 35.0 6.7 55 151-205 122-177 (224)
23 PRK13768 GTPase; Provisional 73.8 6.2 0.00013 37.2 5.2 42 151-192 141-188 (253)
24 PRK00454 engB GTP-binding prot 73.3 17 0.00036 31.6 7.6 56 50-105 119-175 (196)
25 TIGR03598 GTPase_YsxC ribosome 73.3 11 0.00025 32.7 6.5 49 151-199 113-162 (179)
26 cd04165 GTPBP1_like GTPBP1-lik 72.6 6.1 0.00013 36.6 4.8 56 50-105 122-178 (224)
27 cd00881 GTP_translation_factor 71.2 9 0.0002 32.7 5.3 49 152-200 99-148 (189)
28 cd00881 GTP_translation_factor 71.2 7.5 0.00016 33.2 4.8 50 50-99 98-148 (189)
29 PRK00454 engB GTP-binding prot 65.4 34 0.00074 29.6 7.8 54 152-205 120-174 (196)
30 PRK00748 1-(5-phosphoribosyl)- 65.2 42 0.00091 30.6 8.7 36 52-88 59-94 (233)
31 cd01853 Toc34_like Toc34-like 64.7 6.1 0.00013 37.4 3.1 43 39-83 113-167 (249)
32 cd04104 p47_IIGP_like p47 (47- 60.3 16 0.00035 32.6 4.9 40 43-82 81-124 (197)
33 TIGR00736 nifR3_rel_arch TIM-b 51.9 15 0.00033 34.6 3.3 51 37-88 161-211 (231)
34 cd01857 HSR1_MMR1 HSR1/MMR1. 48.6 37 0.0008 28.5 5.0 48 51-102 25-75 (141)
35 cd04163 Era Era subfamily. Er 47.3 36 0.00078 27.7 4.6 42 51-92 96-139 (168)
36 cd04163 Era Era subfamily. Er 46.1 41 0.00089 27.4 4.8 40 153-192 97-138 (168)
37 PF03129 HGTP_anticodon: Antic 46.0 29 0.00063 26.9 3.7 63 167-239 2-65 (94)
38 cd01895 EngA2 EngA2 subfamily. 44.9 41 0.0009 27.8 4.7 46 50-95 97-145 (174)
39 KOG1424|consensus 44.5 25 0.00054 37.1 3.8 49 52-105 191-241 (562)
40 PF13986 DUF4224: Domain of un 43.9 41 0.0009 23.8 3.8 29 177-205 1-34 (47)
41 PF10437 Lip_prot_lig_C: Bacte 43.6 14 0.0003 28.9 1.4 31 245-275 8-54 (86)
42 KOG1490|consensus 41.0 22 0.00049 37.6 2.8 49 158-206 273-322 (620)
43 COG1162 Predicted GTPases [Gen 39.6 49 0.0011 32.6 4.8 119 163-288 107-254 (301)
44 PRK09435 membrane ATPase/prote 38.8 42 0.00091 33.3 4.3 53 42-95 169-224 (332)
45 COG3276 SelB Selenocysteine-sp 38.7 3.1E+02 0.0067 28.6 10.5 60 144-204 74-141 (447)
46 cd01895 EngA2 EngA2 subfamily. 38.6 64 0.0014 26.6 4.9 44 152-195 98-144 (174)
47 cd01858 NGP_1 NGP-1. Autoanti 38.4 44 0.00096 28.5 3.9 28 159-186 32-59 (157)
48 PRK00089 era GTPase Era; Revie 37.6 64 0.0014 30.5 5.3 49 43-91 85-140 (292)
49 TIGR03594 GTPase_EngA ribosome 36.4 56 0.0012 32.7 4.9 33 50-82 91-124 (429)
50 PF00009 GTP_EFTU: Elongation 36.3 92 0.002 27.3 5.8 44 151-195 106-150 (188)
51 COG1159 Era GTPase [General fu 36.1 1.9E+02 0.004 28.6 8.2 133 142-283 84-255 (298)
52 cd01858 NGP_1 NGP-1. Autoanti 35.1 55 0.0012 27.9 4.0 31 53-83 24-57 (157)
53 cd01857 HSR1_MMR1 HSR1/MMR1. 34.9 67 0.0015 26.9 4.4 43 158-204 34-76 (141)
54 PF04670 Gtr1_RagA: Gtr1/RagA 33.0 1.2E+02 0.0027 28.4 6.3 69 56-127 102-177 (232)
55 cd04171 SelB SelB subfamily. 32.6 2E+02 0.0044 23.5 7.1 31 167-197 105-135 (164)
56 cd01894 EngA1 EngA1 subfamily. 32.6 74 0.0016 25.9 4.3 34 50-83 89-123 (157)
57 cd04164 trmE TrmE (MnmE, ThdF, 32.4 31 0.00067 28.2 1.9 40 43-83 81-125 (157)
58 cd04171 SelB SelB subfamily. 32.2 1.7E+02 0.0036 24.0 6.5 37 66-102 105-144 (164)
59 PF04670 Gtr1_RagA: Gtr1/RagA 32.2 1.1E+02 0.0023 28.9 5.7 46 158-203 103-155 (232)
60 cd01897 NOG NOG1 is a nucleola 31.9 74 0.0016 26.6 4.3 22 165-186 112-133 (168)
61 cd01856 YlqF YlqF. Proteins o 31.7 89 0.0019 27.1 4.9 33 50-83 32-64 (171)
62 cd01897 NOG NOG1 is a nucleola 31.1 75 0.0016 26.6 4.2 22 64-85 112-133 (168)
63 cd01888 eIF2_gamma eIF2-gamma 29.8 1.8E+02 0.004 25.9 6.7 31 167-197 138-168 (203)
64 cd01894 EngA1 EngA1 subfamily. 29.2 1.2E+02 0.0027 24.6 5.1 32 153-184 91-123 (157)
65 cd01884 EF_Tu EF-Tu subfamily. 29.0 1.5E+02 0.0032 26.7 6.0 49 151-199 101-152 (195)
66 cd00861 ProRS_anticodon_short 28.9 1.9E+02 0.0042 21.9 5.9 52 182-238 14-66 (94)
67 cd01888 eIF2_gamma eIF2-gamma 28.8 2.1E+02 0.0046 25.5 6.9 50 54-103 124-178 (203)
68 TIGR03594 GTPase_EngA ribosome 28.3 1E+02 0.0022 30.8 5.2 56 41-96 255-315 (429)
69 PRK00748 1-(5-phosphoribosyl)- 28.0 63 0.0014 29.5 3.4 37 51-88 174-210 (233)
70 PRK13793 nicotinamide-nucleoti 27.6 4.4E+02 0.0096 24.3 8.8 100 168-274 33-147 (196)
71 TIGR00736 nifR3_rel_arch TIM-b 27.5 78 0.0017 29.9 3.9 42 147-188 169-210 (231)
72 cd00880 Era_like Era (E. coli 26.6 1.3E+02 0.0029 23.7 4.8 31 58-88 97-127 (163)
73 KOG1490|consensus 26.0 59 0.0013 34.5 3.0 49 58-106 274-323 (620)
74 PF01207 Dus: Dihydrouridine s 25.7 52 0.0011 32.1 2.5 35 53-88 169-203 (309)
75 cd01889 SelB_euk SelB subfamil 25.3 1.7E+02 0.0036 25.6 5.5 30 65-94 120-149 (192)
76 PRK00093 GTP-binding protein D 25.3 1.3E+02 0.0027 30.3 5.2 30 50-79 93-123 (435)
77 cd04164 trmE TrmE (MnmE, ThdF, 25.1 55 0.0012 26.6 2.2 41 143-184 80-125 (157)
78 cd00880 Era_like Era (E. coli 25.0 1.7E+02 0.0036 23.1 5.1 30 159-188 97-126 (163)
79 cd01884 EF_Tu EF-Tu subfamily. 24.3 1.8E+02 0.0038 26.2 5.5 50 50-99 101-153 (195)
80 COG0050 TufB GTPases - transla 24.2 1E+02 0.0022 30.9 4.0 33 168-200 130-163 (394)
81 cd04732 HisA HisA. Phosphorib 24.2 4.9E+02 0.011 23.5 8.6 128 52-189 58-210 (234)
82 cd01889 SelB_euk SelB subfamil 24.1 2.2E+02 0.0048 24.8 6.0 30 166-195 120-149 (192)
83 PRK09866 hypothetical protein; 23.7 1.1E+02 0.0025 33.6 4.7 50 50-99 271-325 (741)
84 CHL00071 tufA elongation facto 23.7 2.1E+02 0.0045 28.9 6.5 49 151-199 111-162 (409)
85 cd01849 YlqF_related_GTPase Yl 23.5 2.2E+02 0.0048 24.1 5.7 22 64-85 28-49 (155)
86 cd04178 Nucleostemin_like Nucl 23.1 2E+02 0.0042 25.5 5.5 40 51-90 13-55 (172)
87 PF00009 GTP_EFTU: Elongation 23.0 1.5E+02 0.0033 25.8 4.8 44 50-94 106-150 (188)
88 PF04914 DltD_C: DltD C-termin 22.7 1.2E+02 0.0026 26.1 3.8 33 176-208 66-98 (130)
89 PRK14457 ribosomal RNA large s 22.5 1.1E+02 0.0024 30.5 4.1 60 39-102 254-323 (345)
90 KOG0626|consensus 22.3 3.2E+02 0.0069 29.1 7.5 127 142-276 83-247 (524)
91 KOG1424|consensus 21.6 1.1E+02 0.0023 32.6 3.9 66 132-205 174-240 (562)
92 PLN02734 glycyl-tRNA synthetas 21.4 1.3E+02 0.0028 33.0 4.6 52 222-273 269-328 (684)
93 PRK00093 GTP-binding protein D 21.4 1.6E+02 0.0036 29.4 5.2 55 41-95 256-314 (435)
94 PRK14024 phosphoribosyl isomer 20.6 1.2E+02 0.0027 28.2 3.8 37 50-87 173-209 (241)
95 COG0107 HisF Imidazoleglycerol 20.2 84 0.0018 30.1 2.6 29 155-184 186-214 (256)
No 1
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=100.00 E-value=2.6e-54 Score=412.28 Aligned_cols=186 Identities=51% Similarity=0.895 Sum_probs=146.5
Q ss_pred chhhHHh-hhhhhHHHHHHhhhhccccccCCCceEEEEEEEe------ecCcccHHHHHhhcCcceEEeeeeecCCCCHH
Q psy97 9 NIVPLIA-KADTLTSAEVKKLKKKLLEDIEENQIQVLIIFYF------SLRQIDIETMRRLHHKVNIVPLIAKADTLTSA 81 (339)
Q Consensus 9 ~~~~~i~-~~~~~~~~e~~~~r~~~~~~~~D~rvhv~~~lYf------~L~~~Di~~mk~L~~~vNvIPVIaKaD~lt~~ 81 (339)
+|+.||. +|+.|+.+|.++.|.. ++|+||||| ||| ||+++||++||+|+++|||||||||||+||++
T Consensus 85 ~I~~yI~~qf~~~l~eE~~~~R~~----~~D~RVH~c--LYfI~pt~~~L~~~Di~~mk~Ls~~vNvIPvIaKaD~lt~~ 158 (281)
T PF00735_consen 85 PIVDYIESQFDSYLEEESKINRPR----IEDTRVHAC--LYFIPPTGHGLKPLDIEFMKRLSKRVNVIPVIAKADTLTPE 158 (281)
T ss_dssp HHHHHHHHHHHHHHHHHTSSS-TT----S----EEEE--EEEE-TTSSSS-HHHHHHHHHHTTTSEEEEEESTGGGS-HH
T ss_pred HHHHHHHHHHHHHHHHhhcccccC----cCCCCcceE--EEEEcCCCccchHHHHHHHHHhcccccEEeEEecccccCHH
Confidence 5899996 8999999999999933 688988776 776 89999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcccccccCCCCCCCcchHHHHhhhhhhcccchhhhccceeeeeecceeEEEEEcccccchHHHHH
Q psy97 82 EVKKLKKKLLEDIEENQIQIYQFPECDSDEDEDFKQQDKELKESVPFAIIGSNTVIEVAGTKVLIIFYFSLRQIDIETMR 161 (339)
Q Consensus 82 E~~~~K~~I~~~l~~~~I~if~fp~~~~~~d~~~~~~~~~ik~~lPFAVVgsnrr~~~~D~rvh~~lYfgl~~lDi~~mk 161 (339)
|++.||++|+++|++++|++|.|+..+.+
T Consensus 159 el~~~k~~i~~~l~~~~I~~f~f~~~~~~--------------------------------------------------- 187 (281)
T PF00735_consen 159 ELQAFKQRIREDLEENNIKIFDFPEDDDD--------------------------------------------------- 187 (281)
T ss_dssp HHHHHHHHHHHHHHHTT--S------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHcCceeecccccccc---------------------------------------------------
Confidence 99999999999999999999998752110
Q ss_pred HhccccceeeeeecCCCCCHHHHHHHHHHHHHHHHHcCCcccCCCCCCCCcCHHhHHHhHhhhcCCCeEEEecCceEee-
Q psy97 162 RLHHKVNIVPLIAKADTLTSAEVKKLKKKLLEDIEENQIQIYQFPECDSDEDEDFKQQDKELKESVPFAIIGSNTVIEV- 240 (339)
Q Consensus 162 ~L~~~vNvIPVIaKaD~LT~~El~~~K~~I~~~l~~~~I~if~f~~~~~~~de~~~~~~~~l~~~~PFaVI~s~~~~~~- 240 (339)
|++ ...+..++..+|||||||++.++.
T Consensus 188 ---------------------------------------------------~~e-~~~~~~~~~~~PFavi~s~~~~~~~ 215 (281)
T PF00735_consen 188 ---------------------------------------------------DEE-IEENQKIRSMLPFAVIGSNTEIENS 215 (281)
T ss_dssp ----------------------------------------------------HC-HHHHHHHHHC-SEEE---SSEEEE-
T ss_pred ---------------------------------------------------ccc-cccccccccceeeEEEecceeeecc
Confidence 001 233556778899999999999988
Q ss_pred CCeeeeeccCCceeeeecCCCCCchHHHHHhhhhhhHHHHHHhhhHHHHHHHHHHHhhhcccc
Q psy97 241 AGTKVRGRQYPWGVVEVENPKHSDFNKLRNMLISTHMQDLKDVTEDVHYENFRAQCLSQISQR 303 (339)
Q Consensus 241 ~g~~~~~R~y~WG~veven~~h~DF~~Lr~~Li~~hl~dLk~~T~~~~YE~yR~~~L~~~~~~ 303 (339)
+|+.++||+||||+|+|+|++||||..||++||++||+|||+.|+++|||+||+++|++...+
T Consensus 216 ~g~~~~gR~YpWG~vev~n~~hsDF~~Lr~~Ll~~~l~dL~~~T~~~~YE~yR~~~L~~~~~~ 278 (281)
T PF00735_consen 216 NGKRVRGRKYPWGTVEVENPEHSDFLKLRNLLLGTHLQDLKDSTENVHYENYRTEKLSSRKNK 278 (281)
T ss_dssp SSSEEEEEEETTEEEETT-TTTSSHHHHHHHHHCCCHHHHHHHHHHCHHHHHHHHHHHHH---
T ss_pred CCcEEeeeecCCccccccccccccHHHHHHHhhcccHHHHHHHHHHHHHHHHHHHHHHhchhc
Confidence 899999999999999999999999999999999999999999999999999999999987653
No 2
>KOG2655|consensus
Probab=100.00 E-value=7.1e-54 Score=417.89 Aligned_cols=170 Identities=51% Similarity=0.888 Sum_probs=159.6
Q ss_pred hhccceeeeeecceeEEEEEc------ccccchHHHHHHhccccceeeeeecCCCCCHHHHHHHHHHHHHHHHHcCCccc
Q psy97 130 IIGSNTVIEVAGTKVLIIFYF------SLRQIDIETMRRLHHKVNIVPLIAKADTLTSAEVKKLKKKLLEDIEENQIQIY 203 (339)
Q Consensus 130 VVgsnrr~~~~D~rvh~~lYf------gl~~lDi~~mk~L~~~vNvIPVIaKaD~LT~~El~~~K~~I~~~l~~~~I~if 203 (339)
-.+.+ |..+.|+|||||||| ||+|+||++||+||.+||+||||||||+||++|+..||.+|+++|..++|++|
T Consensus 117 E~~~~-R~~~~D~RVH~cLYFI~P~ghgL~p~Di~~Mk~l~~~vNiIPVI~KaD~lT~~El~~~K~~I~~~i~~~nI~vf 195 (366)
T KOG2655|consen 117 ESRLN-RSKIKDNRVHCCLYFISPTGHGLKPLDIEFMKKLSKKVNLIPVIAKADTLTKDELNQFKKRIRQDIEEHNIKVF 195 (366)
T ss_pred hccCC-cccccCCceEEEEEEeCCCCCCCcHhhHHHHHHHhccccccceeeccccCCHHHHHHHHHHHHHHHHHcCccee
Confidence 34555 467899999999999 89999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCcCHHhHHHhHhhhcCCCeEEEecCceEeeCCee-eeeccCCceeeeecCCCCCchHHHHHhhhhhhHHHHHH
Q psy97 204 QFPECDSDEDEDFKQQDKELKESVPFAIIGSNTVIEVAGTK-VRGRQYPWGVVEVENPKHSDFNKLRNMLISTHMQDLKD 282 (339)
Q Consensus 204 ~f~~~~~~~de~~~~~~~~l~~~~PFaVI~s~~~~~~~g~~-~~~R~y~WG~veven~~h~DF~~Lr~~Li~~hl~dLk~ 282 (339)
.||.+++ |+++.++++.+++++|||||||+..++.+|+. ++||+||||+++|+|++||||..||++||++||+||++
T Consensus 196 ~fp~~~~--d~~~~~~~~~l~~~~PFAIigs~~~~e~~G~~~vrgR~YpWG~veien~~h~DF~~Lr~~Li~thl~dLk~ 273 (366)
T KOG2655|consen 196 DFPTDES--DEELKEEEQDLKSSIPFAIIGSNTEIEEKGKKRVRGRKYPWGTVEIENPEHCDFKKLRNLLIRTHLEDLKD 273 (366)
T ss_pred cCCCCcc--hhhhHHHHHHHhhcCCeEEEecCceeecCCceEeeceecCCceeeccCCCcchHHHHHHHHHHHHHHHHHH
Confidence 9998655 56777889999999999999999999998876 99999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHhhhccc
Q psy97 283 VTEDVHYENFRAQCLSQISQ 302 (339)
Q Consensus 283 ~T~~~~YE~yR~~~L~~~~~ 302 (339)
.|++.|||+||+++|.....
T Consensus 274 ~T~~~~YEnYR~~~L~~~~~ 293 (366)
T KOG2655|consen 274 TTNNLLYENYRTEKLEGLLY 293 (366)
T ss_pred HHhHHHHHHHHHHHHhhccc
Confidence 99999999999999998764
No 3
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=100.00 E-value=1.3e-53 Score=413.94 Aligned_cols=171 Identities=46% Similarity=0.837 Sum_probs=156.2
Q ss_pred hccceeeeeecceeEEEEEc------ccccchHHHHHHhccccceeeeeecCCCCCHHHHHHHHHHHHHHHHHcCCcccC
Q psy97 131 IGSNTVIEVAGTKVLIIFYF------SLRQIDIETMRRLHHKVNIVPLIAKADTLTSAEVKKLKKKLLEDIEENQIQIYQ 204 (339)
Q Consensus 131 Vgsnrr~~~~D~rvh~~lYf------gl~~lDi~~mk~L~~~vNvIPVIaKaD~LT~~El~~~K~~I~~~l~~~~I~if~ 204 (339)
....+...+.|+|||||||| ||+++||++||+|+++||+||||||||+||.+|++.||++|+++|.+++|++|.
T Consensus 121 ~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DIe~Mk~ls~~vNlIPVI~KaD~lT~~El~~~K~~I~~~i~~~nI~vf~ 200 (373)
T COG5019 121 QKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDIEAMKRLSKRVNLIPVIAKADTLTDDELAEFKERIREDLEQYNIPVFD 200 (373)
T ss_pred hccccccccccCceEEEEEEecCCCCCCCHHHHHHHHHHhcccCeeeeeeccccCCHHHHHHHHHHHHHHHHHhCCceeC
Confidence 34443336899999999999 999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCCCcC-HHhHHHhHhhhcCCCeEEEecCceEeeCCeeeeeccCCceeeeecCCCCCchHHHHHhhhhhhHHHHHHh
Q psy97 205 FPECDSDED-EDFKQQDKELKESVPFAIIGSNTVIEVAGTKVRGRQYPWGVVEVENPKHSDFNKLRNMLISTHMQDLKDV 283 (339)
Q Consensus 205 f~~~~~~~d-e~~~~~~~~l~~~~PFaVI~s~~~~~~~g~~~~~R~y~WG~veven~~h~DF~~Lr~~Li~~hl~dLk~~ 283 (339)
|. |.++| ++..+.++.+.+++|||||||+..+..+|+.++||+||||+++|+|++||||..||++||++||++|++.
T Consensus 201 -py-d~e~~~~e~~e~~~~l~~~~PFAII~S~~~~~~~~~~vrgR~YpWG~v~Idd~~hsDF~~Lr~~Li~thL~~L~~~ 278 (373)
T COG5019 201 -PY-DPEDDEDESLEENQDLRSLIPFAIIGSNTEIENGGEQVRGRKYPWGVVEIDDEEHSDFKKLRNLLIRTHLQELKET 278 (373)
T ss_pred -CC-CccccchhhHHHHHHHhhcCCeEEEeccceeccCCceeeeeccCCcceecCCCccchHHHHHHHHHHHHHHHHHHH
Confidence 63 33333 3556778999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHhhhcccc
Q psy97 284 TEDVHYENFRAQCLSQISQR 303 (339)
Q Consensus 284 T~~~~YE~yR~~~L~~~~~~ 303 (339)
|++.+||+||+++|+.....
T Consensus 279 T~~~~YE~YR~e~L~~~~~~ 298 (373)
T COG5019 279 TENLLYENYRTEKLSGLKNS 298 (373)
T ss_pred HHHHHHHHHHHHHHhhcccc
Confidence 99999999999999987643
No 4
>KOG1547|consensus
Probab=100.00 E-value=1.3e-51 Score=380.97 Aligned_cols=171 Identities=42% Similarity=0.728 Sum_probs=158.7
Q ss_pred hccceeeeeecceeEEEEEc------ccccchHHHHHHhccccceeeeeecCCCCCHHHHHHHHHHHHHHHHHcCCcccC
Q psy97 131 IGSNTVIEVAGTKVLIIFYF------SLRQIDIETMRRLHHKVNIVPLIAKADTLTSAEVKKLKKKLLEDIEENQIQIYQ 204 (339)
Q Consensus 131 Vgsnrr~~~~D~rvh~~lYf------gl~~lDi~~mk~L~~~vNvIPVIaKaD~LT~~El~~~K~~I~~~l~~~~I~if~ 204 (339)
+.+++...++|+|||||+|| +|+|+||++||+|++-|||||||||||+||.+|..+||++|+++|..|||++|.
T Consensus 143 lni~R~kripDTRVHcclyFi~ptGhsLrplDieflkrLt~vvNvvPVIakaDtlTleEr~~FkqrI~~el~~~~i~vYP 222 (336)
T KOG1547|consen 143 LNIAREKRIPDTRVHCCLYFIPPTGHSLRPLDIEFLKRLTEVVNVVPVIAKADTLTLEERSAFKQRIRKELEKHGIDVYP 222 (336)
T ss_pred HhHHhhhcCCCceEEEEEEEeCCCCCccCcccHHHHHHHhhhheeeeeEeecccccHHHHHHHHHHHHHHHHhcCccccc
Confidence 45565667999999999999 799999999999999999999999999999999999999999999999999996
Q ss_pred CCCCCCCcCHHhHHHhHhhhcCCCeEEEecCceEeeCCeeeeeccCCceeeeecCCCCCchHHHHHhhhhhhHHHHHHhh
Q psy97 205 FPECDSDEDEDFKQQDKELKESVPFAIIGSNTVIEVAGTKVRGRQYPWGVVEVENPKHSDFNKLRNMLISTHMQDLKDVT 284 (339)
Q Consensus 205 f~~~~~~~de~~~~~~~~l~~~~PFaVI~s~~~~~~~g~~~~~R~y~WG~veven~~h~DF~~Lr~~Li~~hl~dLk~~T 284 (339)
.. ..|+|.+....+..+++.+|||||||+.++.+||+.++||+.+||+++|||..||+|..||++||+|||||||+.|
T Consensus 223 q~--~fded~ed~~lN~kvR~~iPFAVVGsd~e~~vnG~~vlGRktrWg~IeVen~nhCeF~~LRdfliRtHlQdlke~T 300 (336)
T KOG1547|consen 223 QD--SFDEDLEDKTLNDKVRESIPFAVVGSDKEIQVNGRRVLGRKTRWGIIEVENLNHCEFVLLRDFLIRTHLQDLKETT 300 (336)
T ss_pred cc--ccccchhHHHHHHHHHhhCCeEEecccceEEEcCeEeeccccccceEEecccccchhHHHHHHHHHHHHHHHHHHh
Confidence 64 3445555667788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhhhcccc
Q psy97 285 EDVHYENFRAQCLSQISQR 303 (339)
Q Consensus 285 ~~~~YE~yR~~~L~~~~~~ 303 (339)
+..|||+||.++|....+.
T Consensus 301 s~iHyE~yR~krLn~~~~~ 319 (336)
T KOG1547|consen 301 SNIHYETYRAKRLNELKEL 319 (336)
T ss_pred hhhhHhHHHHHHHhhhcCC
Confidence 9999999999999987654
No 5
>KOG3859|consensus
Probab=100.00 E-value=3e-51 Score=384.89 Aligned_cols=195 Identities=38% Similarity=0.667 Sum_probs=181.9
Q ss_pred eeecceeEEEEEc------ccccchHHHHHHhccccceeeeeecCCCCCHHHHHHHHHHHHHHHHHcCCcccCCCCCCCC
Q psy97 138 EVAGTKVLIIFYF------SLRQIDIETMRRLHHKVNIVPLIAKADTLTSAEVKKLKKKLLEDIEENQIQIYQFPECDSD 211 (339)
Q Consensus 138 ~~~D~rvh~~lYf------gl~~lDi~~mk~L~~~vNvIPVIaKaD~LT~~El~~~K~~I~~~l~~~~I~if~f~~~~~~ 211 (339)
.+.|+|+|+|+|| ||+.+|+.+||+|.++||+||||||||+.+.+||+.||..|+.+|..+|+.||+||.+
T Consensus 142 ~~hDsRiH~CLYFI~PTGH~LKslDLvtmk~LdskVNIIPvIAKaDtisK~eL~~FK~kimsEL~sngv~IYqfPtD--- 218 (406)
T KOG3859|consen 142 TYHDSRIHVCLYFISPTGHSLKSLDLVTMKKLDSKVNIIPVIAKADTISKEELKRFKIKIMSELVSNGVQIYQFPTD--- 218 (406)
T ss_pred HhccCceEEEEEEecCCCcchhHHHHHHHHHHhhhhhhHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCceeeeccch---
Confidence 3689999999999 8999999999999999999999999999999999999999999999999999999963
Q ss_pred cCHHhHHHhHhhhcCCCeEEEecCceEeeCCeeeeeccCCceeeeecCCCCCchHHHHHhhhhhhHHHHHHhhhHHHHHH
Q psy97 212 EDEDFKQQDKELKESVPFAIIGSNTVIEVAGTKVRGRQYPWGVVEVENPKHSDFNKLRNMLISTHMQDLKDVTEDVHYEN 291 (339)
Q Consensus 212 ~de~~~~~~~~l~~~~PFaVI~s~~~~~~~g~~~~~R~y~WG~veven~~h~DF~~Lr~~Li~~hl~dLk~~T~~~~YE~ 291 (339)
|+...+.+..++..+|||||||++.+.++++.++.|+||||+|.|+|+.||||.+||.+||+++|.||++.||..|||.
T Consensus 219 -detva~~N~~mn~~lPFAVvGSte~vKvgnkmvraRqyPwG~v~vENE~HCDFVKLREmLirtNmedlReqTHtrhYEl 297 (406)
T KOG3859|consen 219 -DETVAKANSEMNHSLPFAVVGSTEEVKVGNKMVKARQYPWGTVQVENELHCDFVKLREMLIRTNMEDLREQTHTRHYEL 297 (406)
T ss_pred -HHHHHHHHHHhhcCCceeEecchHhhhhhhhhhhhccCCCCceeecchhhhHHHHHHHHHccccHHHHhhhccccchHH
Confidence 4456677889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhccccCCCCCCCCCCCC-----cccchhHHHHHHhhHHHHhhhhc
Q psy97 292 FRAQCLSQISQRGDRGKLKKDSAP-----DGLITETDRLLLEKDEEVSASIM 338 (339)
Q Consensus 292 yR~~~L~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~el~~~~~ 338 (339)
||..+|..|+... .++.+.|++ |+.|.|+...+|++|+||+|||+
T Consensus 298 yRr~kL~~Mgf~d--v~~~~~p~s~qet~eaKr~e~~~e~qrkEee~rqmFv 347 (406)
T KOG3859|consen 298 YRRCKLEEMGFKD--VDPDNKPFSLQETYEAKRNEFLGELQRKEEEMRQMFV 347 (406)
T ss_pred HHHHHHHHcCCcc--CCCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 9999999999874 444444554 88999999999999999999996
No 6
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=100.00 E-value=4.9e-44 Score=340.47 Aligned_cols=162 Identities=54% Similarity=0.954 Sum_probs=150.3
Q ss_pred eeeecceeEEEEEc------ccccchHHHHHHhccccceeeeeecCCCCCHHHHHHHHHHHHHHHHHcCCcccCCCCCCC
Q psy97 137 IEVAGTKVLIIFYF------SLRQIDIETMRRLHHKVNIVPLIAKADTLTSAEVKKLKKKLLEDIEENQIQIYQFPECDS 210 (339)
Q Consensus 137 ~~~~D~rvh~~lYf------gl~~lDi~~mk~L~~~vNvIPVIaKaD~LT~~El~~~K~~I~~~l~~~~I~if~f~~~~~ 210 (339)
..+.|+++|+|+|+ |+.+.|+++|+.|+..+|+|||++|+|++|.+|+..+|+.+++.+..+||++|.|+..+.
T Consensus 108 ~~~~d~rvh~~ly~i~~~~~~l~~~D~~~lk~l~~~v~vi~VinK~D~l~~~e~~~~k~~i~~~l~~~~i~~~~~~~~~~ 187 (276)
T cd01850 108 PRIPDTRVHACLYFIEPTGHGLKPLDIEFMKRLSKRVNIIPVIAKADTLTPEELKEFKQRIMEDIEEHNIKIYKFPEDEE 187 (276)
T ss_pred ccCCCCceEEEEEEEeCCCCCCCHHHHHHHHHHhccCCEEEEEECCCcCCHHHHHHHHHHHHHHHHHcCCceECCCCCcc
Confidence 35689999999999 689999999999999999999999999999999999999999999999999999986432
Q ss_pred CcCHHhHHHhHhhhcCCCeEEEecCceEeeCCeeeeeccCCceeeeecCCCCCchHHHHHhhhhhhHHHHHHhhhHHHHH
Q psy97 211 DEDEDFKQQDKELKESVPFAIIGSNTVIEVAGTKVRGRQYPWGVVEVENPKHSDFNKLRNMLISTHMQDLKDVTEDVHYE 290 (339)
Q Consensus 211 ~~de~~~~~~~~l~~~~PFaVI~s~~~~~~~g~~~~~R~y~WG~veven~~h~DF~~Lr~~Li~~hl~dLk~~T~~~~YE 290 (339)
+++....++.+...+|||||||++.++.+|+.++||+||||+|+|+|++||||.+||++||++||+||++.|+++|||
T Consensus 188 --~~~~~~~~~~~~~~~Pfavi~s~~~~~~~g~~~~~R~y~WG~~~v~n~~h~df~~Lr~~l~~~~~~~l~~~t~~~~Ye 265 (276)
T cd01850 188 --DDETIEENKKLRSLIPFAVVGSNEEVEVNGKKVRGRKYPWGVVEVENEEHCDFVKLRNLLIRTHLQDLKETTHNVHYE 265 (276)
T ss_pred --cHHHHHHHHhhccCCCcEEEecCceeecCCcEEEEecCCccEEeecCcccccHHHHHHHHHHHHHHHHHHhhhhhhhH
Confidence 223445678899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhc
Q psy97 291 NFRAQCLSQI 300 (339)
Q Consensus 291 ~yR~~~L~~~ 300 (339)
+||+++|..+
T Consensus 266 ~yr~~~l~~~ 275 (276)
T cd01850 266 NYRTEKLSSR 275 (276)
T ss_pred HHHHHHHhcC
Confidence 9999999864
No 7
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=100.00 E-value=1.8e-34 Score=280.47 Aligned_cols=167 Identities=34% Similarity=0.587 Sum_probs=139.2
Q ss_pred cchhhHHh-hhhhhHHHHHHhhhhccccccCCCceEEEEEEEe------ecCcccHHHHHhhcCcceEEeeeeecCCCCH
Q psy97 8 VNIVPLIA-KADTLTSAEVKKLKKKLLEDIEENQIQVLIIFYF------SLRQIDIETMRRLHHKVNIVPLIAKADTLTS 80 (339)
Q Consensus 8 ~~~~~~i~-~~~~~~~~e~~~~r~~~~~~~~D~rvhv~~~lYf------~L~~~Di~~mk~L~~~vNvIPVIaKaD~lt~ 80 (339)
.||+.||. +|++||.+|++..|+|+ +.|+||||| ||| ||+|+||++||+|+++|||||||||||+||.
T Consensus 103 e~I~~yI~~q~d~yl~~E~~~~R~~~---~~D~RVH~c--LYFI~Ptgh~l~~~DIe~Mk~ls~~vNlIPVI~KaD~lT~ 177 (373)
T COG5019 103 EPIVDYIDDQFDQYLDEEQKIKRNPK---FKDTRVHAC--LYFIRPTGHGLKPLDIEAMKRLSKRVNLIPVIAKADTLTD 177 (373)
T ss_pred HHHHHHHHHHHHHHHHHhhccccccc---cccCceEEE--EEEecCCCCCCCHHHHHHHHHHhcccCeeeeeeccccCCH
Confidence 47999996 89999999999999986 688998877 777 9999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcccccccCCCCCCCcc-hHHHHhhhhhhcccchhhhccceeeeeecceeEEEEEc-ccccch--
Q psy97 81 AEVKKLKKKLLEDIEENQIQIYQFPECDSDED-EDFKQQDKELKESVPFAIIGSNTVIEVAGTKVLIIFYF-SLRQID-- 156 (339)
Q Consensus 81 ~E~~~~K~~I~~~l~~~~I~if~fp~~~~~~d-~~~~~~~~~ik~~lPFAVVgsnrr~~~~D~rvh~~lYf-gl~~lD-- 156 (339)
+|++.||++|+++|..++|++|. |. +.++| .+..+.++.+.+++|||||||++.....+..+|++-|+ |+-.+|
T Consensus 178 ~El~~~K~~I~~~i~~~nI~vf~-py-d~e~~~~e~~e~~~~l~~~~PFAII~S~~~~~~~~~~vrgR~YpWG~v~Idd~ 255 (373)
T COG5019 178 DELAEFKERIREDLEQYNIPVFD-PY-DPEDDEDESLEENQDLRSLIPFAIIGSNTEIENGGEQVRGRKYPWGVVEIDDE 255 (373)
T ss_pred HHHHHHHHHHHHHHHHhCCceeC-CC-CccccchhhHHHHHHHhhcCCeEEEeccceeccCCceeeeeccCCcceecCCC
Confidence 99999999999999999999998 63 43333 35667889999999999999997776677789999999 765554
Q ss_pred ----HHHHHHhccccceeeeeecCCCCCHHHHHHHHHHHHHHHH
Q psy97 157 ----IETMRRLHHKVNIVPLIAKADTLTSAEVKKLKKKLLEDIE 196 (339)
Q Consensus 157 ----i~~mk~L~~~vNvIPVIaKaD~LT~~El~~~K~~I~~~l~ 196 (339)
..+|+.+ |-.+.|+.+|..-...+.
T Consensus 256 ~hsDF~~Lr~~---------------Li~thL~~L~~~T~~~~Y 284 (373)
T COG5019 256 EHSDFKKLRNL---------------LIRTHLQELKETTENLLY 284 (373)
T ss_pred ccchHHHHHHH---------------HHHHHHHHHHHHHHHHHH
Confidence 4456644 334566666666655543
No 8
>KOG2655|consensus
Probab=100.00 E-value=4.2e-34 Score=279.32 Aligned_cols=142 Identities=43% Similarity=0.691 Sum_probs=127.9
Q ss_pred cchhhHHh-hhhhhHHHHHHhhhhccccccCCCceEEEEEEEe------ecCcccHHHHHhhcCcceEEeeeeecCCCCH
Q psy97 8 VNIVPLIA-KADTLTSAEVKKLKKKLLEDIEENQIQVLIIFYF------SLRQIDIETMRRLHHKVNIVPLIAKADTLTS 80 (339)
Q Consensus 8 ~~~~~~i~-~~~~~~~~e~~~~r~~~~~~~~D~rvhv~~~lYf------~L~~~Di~~mk~L~~~vNvIPVIaKaD~lt~ 80 (339)
.||+.||+ +|++||.+|++..|++ ++|+||||| ||| ||+|+||++||+||.+||+||||||||+||+
T Consensus 100 ~pi~~yi~~q~~~yl~~E~~~~R~~----~~D~RVH~c--LYFI~P~ghgL~p~Di~~Mk~l~~~vNiIPVI~KaD~lT~ 173 (366)
T KOG2655|consen 100 RPIVNYIDSQFDQYLDEESRLNRSK----IKDNRVHCC--LYFISPTGHGLKPLDIEFMKKLSKKVNLIPVIAKADTLTK 173 (366)
T ss_pred hhhhHHHHHHHHHHHhhhccCCccc----ccCCceEEE--EEEeCCCCCCCcHhhHHHHHHHhccccccceeeccccCCH
Confidence 57999996 8999999999999944 799999877 777 8999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcccccccCCCCCCCcchHHHHhhhhhhcccchhhhccceeeeeecce-eEEEEEc-ccccchH
Q psy97 81 AEVKKLKKKLLEDIEENQIQIYQFPECDSDEDEDFKQQDKELKESVPFAIIGSNTVIEVAGTK-VLIIFYF-SLRQIDI 157 (339)
Q Consensus 81 ~E~~~~K~~I~~~l~~~~I~if~fp~~~~~~d~~~~~~~~~ik~~lPFAVVgsnrr~~~~D~r-vh~~lYf-gl~~lDi 157 (339)
+|++.||++|+++|..++|++|.||.+++ |.+..+.++.++.++|||||||++..+..|.+ |.++.|+ |+-.+|-
T Consensus 174 ~El~~~K~~I~~~i~~~nI~vf~fp~~~~--d~~~~~~~~~l~~~~PFAIigs~~~~e~~G~~~vrgR~YpWG~veien 250 (366)
T KOG2655|consen 174 DELNQFKKRIRQDIEEHNIKVFDFPTDES--DEELKEEEQDLKSSIPFAIIGSNTEIEEKGKKRVRGRKYPWGTVEIEN 250 (366)
T ss_pred HHHHHHHHHHHHHHHHcCcceecCCCCcc--hhhhHHHHHHHhhcCCeEEEecCceeecCCceEeeceecCCceeeccC
Confidence 99999999999999999999999998654 56677889999999999999999766777777 8999999 7666553
No 9
>KOG1547|consensus
Probab=100.00 E-value=5.6e-33 Score=257.35 Aligned_cols=135 Identities=36% Similarity=0.582 Sum_probs=122.7
Q ss_pred chhhHHh-hhhhhHHHHHHhhhhccccccCCCceEEEEEEEe------ecCcccHHHHHhhcCcceEEeeeeecCCCCHH
Q psy97 9 NIVPLIA-KADTLTSAEVKKLKKKLLEDIEENQIQVLIIFYF------SLRQIDIETMRRLHHKVNIVPLIAKADTLTSA 81 (339)
Q Consensus 9 ~~~~~i~-~~~~~~~~e~~~~r~~~~~~~~D~rvhv~~~lYf------~L~~~Di~~mk~L~~~vNvIPVIaKaD~lt~~ 81 (339)
||++||. +|.+||-+|.-.-|++. |||+||||| ||| +|+|+||++||+|++-|||||||||||+||.+
T Consensus 126 PI~kyIneQye~yL~eElni~R~kr---ipDTRVHcc--lyFi~ptGhsLrplDieflkrLt~vvNvvPVIakaDtlTle 200 (336)
T KOG1547|consen 126 PIEKYINEQYEQYLREELNIAREKR---IPDTRVHCC--LYFIPPTGHSLRPLDIEFLKRLTEVVNVVPVIAKADTLTLE 200 (336)
T ss_pred HHHHHHHHHHHHHHHHHHhHHhhhc---CCCceEEEE--EEEeCCCCCccCcccHHHHHHHhhhheeeeeEeecccccHH
Confidence 6999995 99999999999999985 899998876 777 99999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcccccccCCCCCCCcchHHHHhhhhhhcccchhhhccceeeeeecceeEEEEEc
Q psy97 82 EVKKLKKKLLEDIEENQIQIYQFPECDSDEDEDFKQQDKELKESVPFAIIGSNTVIEVAGTKVLIIFYF 150 (339)
Q Consensus 82 E~~~~K~~I~~~l~~~~I~if~fp~~~~~~d~~~~~~~~~ik~~lPFAVVgsnrr~~~~D~rvh~~lYf 150 (339)
|..+||++|+++|..|+|++| |+..+|+|.+.+..+..+++++|||||||+....+++.++.++-.-
T Consensus 201 Er~~FkqrI~~el~~~~i~vY--Pq~~fded~ed~~lN~kvR~~iPFAVVGsd~e~~vnG~~vlGRktr 267 (336)
T KOG1547|consen 201 ERSAFKQRIRKELEKHGIDVY--PQDSFDEDLEDKTLNDKVRESIPFAVVGSDKEIQVNGRRVLGRKTR 267 (336)
T ss_pred HHHHHHHHHHHHHHhcCcccc--cccccccchhHHHHHHHHHhhCCeEEecccceEEEcCeEeeccccc
Confidence 999999999999999999999 4445556666778899999999999999998888888888888776
No 10
>KOG3859|consensus
Probab=99.95 E-value=2.6e-29 Score=237.03 Aligned_cols=152 Identities=35% Similarity=0.611 Sum_probs=131.6
Q ss_pred chhhHHh-hhhhhHHHHHHhhhhccccccCCCceEEEEEEEe------ecCcccHHHHHhhcCcceEEeeeeecCCCCHH
Q psy97 9 NIVPLIA-KADTLTSAEVKKLKKKLLEDIEENQIQVLIIFYF------SLRQIDIETMRRLHHKVNIVPLIAKADTLTSA 81 (339)
Q Consensus 9 ~~~~~i~-~~~~~~~~e~~~~r~~~~~~~~D~rvhv~~~lYf------~L~~~Di~~mk~L~~~vNvIPVIaKaD~lt~~ 81 (339)
|||.||+ +|..||-||-|+.|+.- ..+|+||||| ||| ||+.+|+-+||+|.++||||||||||||.+.+
T Consensus 117 ~iVdyidaQFEaYLQEELKi~Rsl~--~~hDsRiH~C--LYFI~PTGH~LKslDLvtmk~LdskVNIIPvIAKaDtisK~ 192 (406)
T KOG3859|consen 117 PIVDYIDAQFEAYLQEELKIRRSLF--TYHDSRIHVC--LYFISPTGHSLKSLDLVTMKKLDSKVNIIPVIAKADTISKE 192 (406)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH--HhccCceEEE--EEEecCCCcchhHHHHHHHHHHhhhhhhHHHHHHhhhhhHH
Confidence 6999996 89999999999999884 4799999988 666 99999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcccccccCCCCCCCcchHHHHhhhhhhcccchhhhccceeeeeecceeEEEEEc-ccccchHH--
Q psy97 82 EVKKLKKKLLEDIEENQIQIYQFPECDSDEDEDFKQQDKELKESVPFAIIGSNTVIEVAGTKVLIIFYF-SLRQIDIE-- 158 (339)
Q Consensus 82 E~~~~K~~I~~~l~~~~I~if~fp~~~~~~d~~~~~~~~~ik~~lPFAVVgsnrr~~~~D~rvh~~lYf-gl~~lDi~-- 158 (339)
|++.||..|+.+|..|||.||.||. +|+.....+..+..++|||||||+..+.+.+..|.++.|+ |.-++..+
T Consensus 193 eL~~FK~kimsEL~sngv~IYqfPt----Ddetva~~N~~mn~~lPFAVvGSte~vKvgnkmvraRqyPwG~v~vENE~H 268 (406)
T KOG3859|consen 193 ELKRFKIKIMSELVSNGVQIYQFPT----DDETVAKANSEMNHSLPFAVVGSTEEVKVGNKMVKARQYPWGTVQVENELH 268 (406)
T ss_pred HHHHHHHHHHHHHHhcCceeeeccc----hHHHHHHHHHHhhcCCceeEecchHhhhhhhhhhhhccCCCCceeecchhh
Confidence 9999999999999999999999996 3344455778889999999999998888888889999999 76665543
Q ss_pred ----HHHHhccccc
Q psy97 159 ----TMRRLHHKVN 168 (339)
Q Consensus 159 ----~mk~L~~~vN 168 (339)
-++++--++|
T Consensus 269 CDFVKLREmLirtN 282 (406)
T KOG3859|consen 269 CDFVKLREMLIRTN 282 (406)
T ss_pred hHHHHHHHHHcccc
Confidence 2455544444
No 11
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.89 E-value=4.4e-23 Score=196.64 Aligned_cols=143 Identities=38% Similarity=0.654 Sum_probs=123.1
Q ss_pred chhhHHh-hhhhhHHHHHHhhhhccccccCCCceEEEEEEEe----ecCcccHHHHHhhcCcceEEeeeeecCCCCHHHH
Q psy97 9 NIVPLIA-KADTLTSAEVKKLKKKLLEDIEENQIQVLIIFYF----SLRQIDIETMRRLHHKVNIVPLIAKADTLTSAEV 83 (339)
Q Consensus 9 ~~~~~i~-~~~~~~~~e~~~~r~~~~~~~~D~rvhv~~~lYf----~L~~~Di~~mk~L~~~vNvIPVIaKaD~lt~~E~ 83 (339)
+|+.||. +|+.|+.+|.+..|++. +.|+|+|||+|+.- ++++.|+++|+.|+..+|+|||++|+|++|.+|+
T Consensus 85 ~i~~yi~~q~~~~l~~e~~~~r~~~---~~d~rvh~~ly~i~~~~~~l~~~D~~~lk~l~~~v~vi~VinK~D~l~~~e~ 161 (276)
T cd01850 85 PIVDYIDDQFDQYLREESRIKRNPR---IPDTRVHACLYFIEPTGHGLKPLDIEFMKRLSKRVNIIPVIAKADTLTPEEL 161 (276)
T ss_pred HHHHHHHHHHHHHHHHHhhhccccc---CCCCceEEEEEEEeCCCCCCCHHHHHHHHHHhccCCEEEEEECCCcCCHHHH
Confidence 5899996 89999999999999764 68898887744432 7899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcccccccCCCCCCCcchHHHHhhhhhhcccchhhhccceeeeeecceeEEEEEc-ccccch
Q psy97 84 KKLKKKLLEDIEENQIQIYQFPECDSDEDEDFKQQDKELKESVPFAIIGSNTVIEVAGTKVLIIFYF-SLRQID 156 (339)
Q Consensus 84 ~~~K~~I~~~l~~~~I~if~fp~~~~~~d~~~~~~~~~ik~~lPFAVVgsnrr~~~~D~rvh~~lYf-gl~~lD 156 (339)
..+|+.|++.|..++|++|.||..+. +++..+.++.+.+.+|||||||+......+..+++|.|+ |.-.++
T Consensus 162 ~~~k~~i~~~l~~~~i~~~~~~~~~~--~~~~~~~~~~~~~~~Pfavi~s~~~~~~~g~~~~~R~y~WG~~~v~ 233 (276)
T cd01850 162 KEFKQRIMEDIEEHNIKIYKFPEDEE--DDETIEENKKLRSLIPFAVVGSNEEVEVNGKKVRGRKYPWGVVEVE 233 (276)
T ss_pred HHHHHHHHHHHHHcCCceECCCCCcc--cHHHHHHHHhhccCCCcEEEecCceeecCCcEEEEecCCccEEeec
Confidence 99999999999999999999987432 234456778899999999999998777778889999999 665554
No 12
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=99.79 E-value=9.7e-20 Score=174.39 Aligned_cols=71 Identities=48% Similarity=0.859 Sum_probs=56.2
Q ss_pred eeeecceeEEEEEc------ccccchHHHHHHhccccceeeeeecCCCCCHHHHHHHHHHHHHHHHHcCCcccCCCC
Q psy97 137 IEVAGTKVLIIFYF------SLRQIDIETMRRLHHKVNIVPLIAKADTLTSAEVKKLKKKLLEDIEENQIQIYQFPE 207 (339)
Q Consensus 137 ~~~~D~rvh~~lYf------gl~~lDi~~mk~L~~~vNvIPVIaKaD~LT~~El~~~K~~I~~~l~~~~I~if~f~~ 207 (339)
....|+|||||+|| ||+++||++||+|+++|||||||||||+||++|++.+|++|+++|++++|++|.|+.
T Consensus 107 ~~~~D~RVH~cLYfI~pt~~~L~~~Di~~mk~Ls~~vNvIPvIaKaD~lt~~el~~~k~~i~~~l~~~~I~~f~f~~ 183 (281)
T PF00735_consen 107 PRIEDTRVHACLYFIPPTGHGLKPLDIEFMKRLSKRVNVIPVIAKADTLTPEELQAFKQRIREDLEENNIKIFDFPE 183 (281)
T ss_dssp TTS----EEEEEEEE-TTSSSS-HHHHHHHHHHTTTSEEEEEESTGGGS-HHHHHHHHHHHHHHHHHTT--S-----
T ss_pred cCcCCCCcceEEEEEcCCCccchHHHHHHHHHhcccccEEeEEecccccCHHHHHHHHHHHHHHHHHcCceeecccc
Confidence 34679999999999 899999999999999999999999999999999999999999999999999999863
No 13
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=84.09 E-value=3.7 Score=33.93 Aligned_cols=55 Identities=25% Similarity=0.409 Sum_probs=41.2
Q ss_pred ecCcccHHHHHhhcCc-ceEEeeeeecCCCCHHHHHHHHHHHHHHHH--hcccccccC
Q psy97 50 SLRQIDIETMRRLHHK-VNIVPLIAKADTLTSAEVKKLKKKLLEDIE--ENQIQIYQF 104 (339)
Q Consensus 50 ~L~~~Di~~mk~L~~~-vNvIPVIaKaD~lt~~E~~~~K~~I~~~l~--~~~I~if~f 104 (339)
...+.+.++++.+... .+++.|+.|+|.++.++....+..+...++ ....++|.+
T Consensus 94 ~~~~~~~~~~~~l~~~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 151 (170)
T cd01876 94 GPTEIDLEMLDWLEELGIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILF 151 (170)
T ss_pred CCCHhHHHHHHHHHHcCCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEE
Confidence 3456677777777754 688999999999999999888888877776 444556544
No 14
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=81.81 E-value=5.5 Score=32.88 Aligned_cols=53 Identities=26% Similarity=0.436 Sum_probs=37.5
Q ss_pred ccchHHHHHHhccc-cceeeeeecCCCCCHHHHHHHHHHHHHHHH--HcCCcccCC
Q psy97 153 RQIDIETMRRLHHK-VNIVPLIAKADTLTSAEVKKLKKKLLEDIE--ENQIQIYQF 205 (339)
Q Consensus 153 ~~lDi~~mk~L~~~-vNvIPVIaKaD~LT~~El~~~K~~I~~~l~--~~~I~if~f 205 (339)
...+.++++.+... .+++.|++|+|.++.++....+..+...++ ..+.+++.+
T Consensus 96 ~~~~~~~~~~l~~~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 151 (170)
T cd01876 96 TEIDLEMLDWLEELGIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILF 151 (170)
T ss_pred CHhHHHHHHHHHHcCCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEE
Confidence 45555556656543 688999999999999998888888777775 334455533
No 15
>PRK00089 era GTPase Era; Reviewed
Probab=79.95 E-value=19 Score=34.12 Aligned_cols=123 Identities=20% Similarity=0.266 Sum_probs=73.9
Q ss_pred cccchHHHHHHhcc-ccceeeeeecCCCC-CHHHHHHHHHHHHHHHHHcCCcccC-------------------------
Q psy97 152 LRQIDIETMRRLHH-KVNIVPLIAKADTL-TSAEVKKLKKKLLEDIEENQIQIYQ------------------------- 204 (339)
Q Consensus 152 l~~lDi~~mk~L~~-~vNvIPVIaKaD~L-T~~El~~~K~~I~~~l~~~~I~if~------------------------- 204 (339)
+...+..+++.+.. .++++.|++|+|.+ +.+++....+.+.+... ..++|.
T Consensus 98 ~~~~~~~i~~~l~~~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~--~~~i~~iSA~~~~gv~~L~~~L~~~l~~~~~ 175 (292)
T PRK00089 98 IGPGDEFILEKLKKVKTPVILVLNKIDLVKDKEELLPLLEELSELMD--FAEIVPISALKGDNVDELLDVIAKYLPEGPP 175 (292)
T ss_pred CChhHHHHHHHHhhcCCCEEEEEECCcCCCCHHHHHHHHHHHHhhCC--CCeEEEecCCCCCCHHHHHHHHHHhCCCCCC
Confidence 45556566666654 57899999999999 55666554444433211 112221
Q ss_pred -CCCC-CCCcCHHh--HHH-----hHhhhcCCCeEEEecCceEeeCCeeeeeccCCceeeeecCCCCCchHHHHHhhhhh
Q psy97 205 -FPEC-DSDEDEDF--KQQ-----DKELKESVPFAIIGSNTVIEVAGTKVRGRQYPWGVVEVENPKHSDFNKLRNMLIST 275 (339)
Q Consensus 205 -f~~~-~~~~de~~--~~~-----~~~l~~~~PFaVI~s~~~~~~~g~~~~~R~y~WG~veven~~h~DF~~Lr~~Li~~ 275 (339)
||.. -.+..+.+ .+. ...+...+|+++-.....++.. +.-+-++++-|+.+.| +.+++|.
T Consensus 176 ~y~~~~~td~~~r~~~~EiiRe~~~~~l~~e~p~~~~v~~~~~~~~-----~~~~i~~~i~v~~~~~------k~i~ig~ 244 (292)
T PRK00089 176 YYPEDQITDRPERFLAAEIIREKLLRLLGDELPYSVAVEIEKFEER-----GLVRIEATIYVERDSQ------KGIIIGK 244 (292)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHhhCCccCCceEEEEEEEEEEC-----CeEEEEEEEEEccCCc------eeEEEeC
Confidence 1110 01111111 111 1245788999998776655543 3445678899999888 8899999
Q ss_pred hHHHHHHhhhHH
Q psy97 276 HMQDLKDVTEDV 287 (339)
Q Consensus 276 hl~dLk~~T~~~ 287 (339)
+-.-|+......
T Consensus 245 ~g~~i~~i~~~a 256 (292)
T PRK00089 245 GGAMLKKIGTEA 256 (292)
T ss_pred CcHHHHHHHHHH
Confidence 988888876543
No 16
>PRK13768 GTPase; Provisional
Probab=79.69 E-value=3.8 Score=38.70 Aligned_cols=42 Identities=24% Similarity=0.332 Sum_probs=34.1
Q ss_pred ecCcccHHHHHhh------cCcceEEeeeeecCCCCHHHHHHHHHHHH
Q psy97 50 SLRQIDIETMRRL------HHKVNIVPLIAKADTLTSAEVKKLKKKLL 91 (339)
Q Consensus 50 ~L~~~Di~~mk~L------~~~vNvIPVIaKaD~lt~~E~~~~K~~I~ 91 (339)
+.++.|++....+ ....++|+|+.|+|.++.++...+++.+.
T Consensus 141 ~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~~~~~~~~~~~~~l~ 188 (253)
T PRK13768 141 AKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADLLSEEELERILKWLE 188 (253)
T ss_pred hCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhhcCchhHHHHHHHHh
Confidence 5678887777655 46789999999999999999888777665
No 17
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=79.34 E-value=4.7 Score=35.20 Aligned_cols=56 Identities=21% Similarity=0.445 Sum_probs=42.9
Q ss_pred EEEEEEe-----ecCcccHHHHHhhc-CcceEEeeeeecCCCCHHHHHHHHHHHHHHHHhcc
Q psy97 43 VLIIFYF-----SLRQIDIETMRRLH-HKVNIVPLIAKADTLTSAEVKKLKKKLLEDIEENQ 98 (339)
Q Consensus 43 v~~~lYf-----~L~~~Di~~mk~L~-~~vNvIPVIaKaD~lt~~E~~~~K~~I~~~l~~~~ 98 (339)
+++++|. ++...+++.++.+. ...++|-|+.|.|.+..++.......+.+.+...+
T Consensus 101 ~~~ii~vvd~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~ 162 (179)
T TIGR03598 101 LKGVVLLMDIRHPLKELDLEMLEWLRERGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDA 162 (179)
T ss_pred hcEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhcc
Confidence 4444554 56678877777666 35789999999999998888888888888888764
No 18
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=78.49 E-value=4.7 Score=38.18 Aligned_cols=42 Identities=12% Similarity=0.281 Sum_probs=32.2
Q ss_pred eeEEEEEc------ccccchHHHHHHhccc------cceeeeeecCCCCCHHHH
Q psy97 143 KVLIIFYF------SLRQIDIETMRRLHHK------VNIVPLIAKADTLTSAEV 184 (339)
Q Consensus 143 rvh~~lYf------gl~~lDi~~mk~L~~~------vNvIPVIaKaD~LT~~El 184 (339)
.+|+.+|+ +....|..+++.|... .|+|.|++|+|.+++++.
T Consensus 114 ~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~p~~~ 167 (249)
T cd01853 114 TPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASSPPDGL 167 (249)
T ss_pred CCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccCCCCCC
Confidence 46677777 4556777788887764 589999999999988765
No 19
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=78.22 E-value=13 Score=33.29 Aligned_cols=33 Identities=15% Similarity=0.132 Sum_probs=23.8
Q ss_pred ccccchHHHHHHhcc-ccceeeeeecCCCCCHHH
Q psy97 151 SLRQIDIETMRRLHH-KVNIVPLIAKADTLTSAE 183 (339)
Q Consensus 151 gl~~lDi~~mk~L~~-~vNvIPVIaKaD~LT~~E 183 (339)
++...|..+++.+.. ..+++-|++|+|.+.+++
T Consensus 91 ~~~~~d~~~~~~l~~~~~~~ilV~nK~D~~~~~~ 124 (197)
T cd04104 91 RFSSNDVKLAKAIQCMGKKFYFVRTKVDRDLSNE 124 (197)
T ss_pred CCCHHHHHHHHHHHHhCCCEEEEEecccchhhhh
Confidence 566677766665553 357789999999988755
No 20
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=74.58 E-value=6 Score=35.23 Aligned_cols=67 Identities=10% Similarity=0.135 Sum_probs=49.3
Q ss_pred ceeEEEEEc----ccccchHHHHHHhccc------cceeeeeecCCCCCHHHHHHH----HHHHHHHHHHcCCcccCCCC
Q psy97 142 TKVLIIFYF----SLRQIDIETMRRLHHK------VNIVPLIAKADTLTSAEVKKL----KKKLLEDIEENQIQIYQFPE 207 (339)
Q Consensus 142 ~rvh~~lYf----gl~~lDi~~mk~L~~~------vNvIPVIaKaD~LT~~El~~~----K~~I~~~l~~~~I~if~f~~ 207 (339)
...|+.+|. .+...|..+++.|.+. -|+|.|++++|.+...++..+ +..++..++..|-+.+.|..
T Consensus 82 ~g~~~illVi~~~~~t~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~r~~~f~~ 161 (196)
T cd01852 82 PGPHAFLLVVPLGRFTEEEEQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGGRYVAFNN 161 (196)
T ss_pred CCCEEEEEEEECCCcCHHHHHHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCCeEEEEeC
Confidence 346777777 4667777777777654 589999999999987766655 45667777888888877764
Q ss_pred C
Q psy97 208 C 208 (339)
Q Consensus 208 ~ 208 (339)
.
T Consensus 162 ~ 162 (196)
T cd01852 162 K 162 (196)
T ss_pred C
Confidence 3
No 21
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=73.92 E-value=6 Score=35.22 Aligned_cols=67 Identities=10% Similarity=0.142 Sum_probs=50.4
Q ss_pred CceEEEEEEEe----ecCcccHHHHHhhcCc------ceEEeeeeecCCCCHHHHHHH----HHHHHHHHHhcccccccC
Q psy97 39 NQIQVLIIFYF----SLRQIDIETMRRLHHK------VNIVPLIAKADTLTSAEVKKL----KKKLLEDIEENQIQIYQF 104 (339)
Q Consensus 39 ~rvhv~~~lYf----~L~~~Di~~mk~L~~~------vNvIPVIaKaD~lt~~E~~~~----K~~I~~~l~~~~I~if~f 104 (339)
.++| +++|. .+++.|.++++.|.+. -|+|.|+.++|.+..+++..+ +..++..++..+-+.+.|
T Consensus 82 ~g~~--~illVi~~~~~t~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~r~~~f 159 (196)
T cd01852 82 PGPH--AFLLVVPLGRFTEEEEQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGGRYVAF 159 (196)
T ss_pred CCCE--EEEEEEECCCcCHHHHHHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCCeEEEE
Confidence 4455 44665 5678888888888764 689999999999987665554 467778888889898888
Q ss_pred CCC
Q psy97 105 PEC 107 (339)
Q Consensus 105 p~~ 107 (339)
...
T Consensus 160 ~~~ 162 (196)
T cd01852 160 NNK 162 (196)
T ss_pred eCC
Confidence 654
No 22
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=73.88 E-value=11 Score=35.04 Aligned_cols=55 Identities=9% Similarity=0.103 Sum_probs=41.0
Q ss_pred ccccchHHHHHHhc-cccceeeeeecCCCCCHHHHHHHHHHHHHHHHHcCCcccCC
Q psy97 151 SLRQIDIETMRRLH-HKVNIVPLIAKADTLTSAEVKKLKKKLLEDIEENQIQIYQF 205 (339)
Q Consensus 151 gl~~lDi~~mk~L~-~~vNvIPVIaKaD~LT~~El~~~K~~I~~~l~~~~I~if~f 205 (339)
|+.+.|.+.+..+. ...+++.|++|+|.+..+++...+..+.+.|...|+.-..+
T Consensus 122 g~~~~d~~~l~~l~~~~ip~ivvvNK~D~~~~~~~~~~~~~l~~~L~~~g~~~~p~ 177 (224)
T cd04165 122 GIIGMTKEHLGLALALNIPVFVVVTKIDLAPANILQETLKDLKRILKVPGVRKLPV 177 (224)
T ss_pred CCcHHHHHHHHHHHHcCCCEEEEEECccccCHHHHHHHHHHHHHHhcCCCccccce
Confidence 66777766555443 34578999999999998888888888888887766665433
No 23
>PRK13768 GTPase; Provisional
Probab=73.78 E-value=6.2 Score=37.25 Aligned_cols=42 Identities=24% Similarity=0.332 Sum_probs=31.8
Q ss_pred ccccchHHHHHHh------ccccceeeeeecCCCCCHHHHHHHHHHHH
Q psy97 151 SLRQIDIETMRRL------HHKVNIVPLIAKADTLTSAEVKKLKKKLL 192 (339)
Q Consensus 151 gl~~lDi~~mk~L------~~~vNvIPVIaKaD~LT~~El~~~K~~I~ 192 (339)
+..+.|++....+ ....++|+|++|+|.++.++...+++.+.
T Consensus 141 ~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~~~~~~~~~~~~~l~ 188 (253)
T PRK13768 141 AKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADLLSEEELERILKWLE 188 (253)
T ss_pred hCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhhcCchhHHHHHHHHh
Confidence 4566776554433 45679999999999999999888776665
No 24
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=73.32 E-value=17 Score=31.63 Aligned_cols=56 Identities=23% Similarity=0.411 Sum_probs=40.8
Q ss_pred ecCcccHHHHHhhcC-cceEEeeeeecCCCCHHHHHHHHHHHHHHHHhcccccccCC
Q psy97 50 SLRQIDIETMRRLHH-KVNIVPLIAKADTLTSAEVKKLKKKLLEDIEENQIQIYQFP 105 (339)
Q Consensus 50 ~L~~~Di~~mk~L~~-~vNvIPVIaKaD~lt~~E~~~~K~~I~~~l~~~~I~if~fp 105 (339)
+..+.+.++++.+.. ...++.|+.|+|+++..+.+.....+.+.+...++.++...
T Consensus 119 ~~~~~~~~i~~~l~~~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~S 175 (196)
T PRK00454 119 PLKELDLQMIEWLKEYGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDEVILFS 175 (196)
T ss_pred CCCHHHHHHHHHHHHcCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCceEEEE
Confidence 344555555555542 45689999999999999888888888888877777777443
No 25
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=73.26 E-value=11 Score=32.74 Aligned_cols=49 Identities=24% Similarity=0.505 Sum_probs=37.2
Q ss_pred ccccchHHHHHHhc-cccceeeeeecCCCCCHHHHHHHHHHHHHHHHHcC
Q psy97 151 SLRQIDIETMRRLH-HKVNIVPLIAKADTLTSAEVKKLKKKLLEDIEENQ 199 (339)
Q Consensus 151 gl~~lDi~~mk~L~-~~vNvIPVIaKaD~LT~~El~~~K~~I~~~l~~~~ 199 (339)
++...+..+++.+. ...+++-|++|.|.+..++.....+.+++.+...+
T Consensus 113 ~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~ 162 (179)
T TIGR03598 113 PLKELDLEMLEWLRERGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDA 162 (179)
T ss_pred CCCHHHHHHHHHHHHcCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhcc
Confidence 45666666666554 35789999999999998888777788888887654
No 26
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=72.63 E-value=6.1 Score=36.62 Aligned_cols=56 Identities=11% Similarity=0.147 Sum_probs=44.4
Q ss_pred ecCcccHHHHHhhc-CcceEEeeeeecCCCCHHHHHHHHHHHHHHHHhcccccccCC
Q psy97 50 SLRQIDIETMRRLH-HKVNIVPLIAKADTLTSAEVKKLKKKLLEDIEENQIQIYQFP 105 (339)
Q Consensus 50 ~L~~~Di~~mk~L~-~~vNvIPVIaKaD~lt~~E~~~~K~~I~~~l~~~~I~if~fp 105 (339)
++.+.|.+.+..+. ....+|.|+.|+|.+..++....+..+.+.|...+++-..+.
T Consensus 122 g~~~~d~~~l~~l~~~~ip~ivvvNK~D~~~~~~~~~~~~~l~~~L~~~g~~~~p~~ 178 (224)
T cd04165 122 GIIGMTKEHLGLALALNIPVFVVVTKIDLAPANILQETLKDLKRILKVPGVRKLPVP 178 (224)
T ss_pred CCcHHHHHHHHHHHHcCCCEEEEEECccccCHHHHHHHHHHHHHHhcCCCcccccee
Confidence 67888877766654 345689999999999988898999999999988887766443
No 27
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=71.25 E-value=9 Score=32.67 Aligned_cols=49 Identities=14% Similarity=0.191 Sum_probs=35.4
Q ss_pred cccchHHHHHHhc-cccceeeeeecCCCCCHHHHHHHHHHHHHHHHHcCC
Q psy97 152 LRQIDIETMRRLH-HKVNIVPLIAKADTLTSAEVKKLKKKLLEDIEENQI 200 (339)
Q Consensus 152 l~~lDi~~mk~L~-~~vNvIPVIaKaD~LT~~El~~~K~~I~~~l~~~~I 200 (339)
....+.+.+..+. ...+++.|++|+|.+++++.....+.+.+.++..++
T Consensus 99 ~~~~~~~~~~~~~~~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~ 148 (189)
T cd00881 99 VQPQTREHLRIAREGGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGF 148 (189)
T ss_pred CcHHHHHHHHHHHHCCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccc
Confidence 3444445444443 467899999999999988888878888888776554
No 28
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=71.22 E-value=7.5 Score=33.19 Aligned_cols=50 Identities=14% Similarity=0.190 Sum_probs=37.6
Q ss_pred ecCcccHHHHHhhc-CcceEEeeeeecCCCCHHHHHHHHHHHHHHHHhccc
Q psy97 50 SLRQIDIETMRRLH-HKVNIVPLIAKADTLTSAEVKKLKKKLLEDIEENQI 99 (339)
Q Consensus 50 ~L~~~Di~~mk~L~-~~vNvIPVIaKaD~lt~~E~~~~K~~I~~~l~~~~I 99 (339)
+....+.+.+..+. ...+++-|+.|+|..++++.......+.+.++..++
T Consensus 98 ~~~~~~~~~~~~~~~~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~ 148 (189)
T cd00881 98 GVQPQTREHLRIAREGGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGF 148 (189)
T ss_pred CCcHHHHHHHHHHHHCCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccc
Confidence 44555666666555 478899999999999988887777888888776654
No 29
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=65.40 E-value=34 Score=29.64 Aligned_cols=54 Identities=24% Similarity=0.422 Sum_probs=37.5
Q ss_pred cccchHHHHHHhcc-ccceeeeeecCCCCCHHHHHHHHHHHHHHHHHcCCcccCC
Q psy97 152 LRQIDIETMRRLHH-KVNIVPLIAKADTLTSAEVKKLKKKLLEDIEENQIQIYQF 205 (339)
Q Consensus 152 l~~lDi~~mk~L~~-~vNvIPVIaKaD~LT~~El~~~K~~I~~~l~~~~I~if~f 205 (339)
....+.++++.+.. ..+++.|++|+|+++..+.+.....+...+...+++++..
T Consensus 120 ~~~~~~~i~~~l~~~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~ 174 (196)
T PRK00454 120 LKELDLQMIEWLKEYGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDEVILF 174 (196)
T ss_pred CCHHHHHHHHHHHHcCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCceEEE
Confidence 44444444554442 4567899999999999888877777777777666677643
No 30
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=65.19 E-value=42 Score=30.61 Aligned_cols=36 Identities=14% Similarity=0.326 Sum_probs=28.6
Q ss_pred CcccHHHHHhhcCcceEEeeeeecCCCCHHHHHHHHH
Q psy97 52 RQIDIETMRRLHHKVNIVPLIAKADTLTSAEVKKLKK 88 (339)
Q Consensus 52 ~~~Di~~mk~L~~~vNvIPVIaKaD~lt~~E~~~~K~ 88 (339)
++.+++.++++.+.++ +||++..-.=+.+++..+..
T Consensus 59 ~~~~~~~i~~i~~~~~-~pv~~~GGI~~~ed~~~~~~ 94 (233)
T PRK00748 59 KPVNLELIEAIVKAVD-IPVQVGGGIRSLETVEALLD 94 (233)
T ss_pred CcccHHHHHHHHHHCC-CCEEEcCCcCCHHHHHHHHH
Confidence 3588999999988886 69999877778788766554
No 31
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=64.74 E-value=6.1 Score=37.44 Aligned_cols=43 Identities=12% Similarity=0.312 Sum_probs=33.3
Q ss_pred CceEEEEEEEe------ecCcccHHHHHhhcCc------ceEEeeeeecCCCCHHHH
Q psy97 39 NQIQVLIIFYF------SLRQIDIETMRRLHHK------VNIVPLIAKADTLTSAEV 83 (339)
Q Consensus 39 ~rvhv~~~lYf------~L~~~Di~~mk~L~~~------vNvIPVIaKaD~lt~~E~ 83 (339)
..+| ++||+ .....|.++++.|... .|+|.|+.|+|.+++++.
T Consensus 113 ~~id--vIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~p~~~ 167 (249)
T cd01853 113 KTPD--VVLYVDRLDMYRRDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASSPPDGL 167 (249)
T ss_pred cCCC--EEEEEEcCCCCCCCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccCCCCCC
Confidence 3445 45776 5667888999998864 589999999999988764
No 32
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=60.32 E-value=16 Score=32.61 Aligned_cols=40 Identities=13% Similarity=0.092 Sum_probs=28.8
Q ss_pred EEEEEEe---ecCcccHHHHHhhcCc-ceEEeeeeecCCCCHHH
Q psy97 43 VLIIFYF---SLRQIDIETMRRLHHK-VNIVPLIAKADTLTSAE 82 (339)
Q Consensus 43 v~~~lYf---~L~~~Di~~mk~L~~~-vNvIPVIaKaD~lt~~E 82 (339)
++++++. ++...|..+++.+... ..++-|+.|+|.+.+++
T Consensus 81 ~d~~l~v~~~~~~~~d~~~~~~l~~~~~~~ilV~nK~D~~~~~~ 124 (197)
T cd04104 81 YDFFIIISSTRFSSNDVKLAKAIQCMGKKFYFVRTKVDRDLSNE 124 (197)
T ss_pred cCEEEEEeCCCCCHHHHHHHHHHHHhCCCEEEEEecccchhhhh
Confidence 3444554 7788888887777643 56789999999987544
No 33
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=51.89 E-value=15 Score=34.63 Aligned_cols=51 Identities=18% Similarity=0.160 Sum_probs=41.9
Q ss_pred CCCceEEEEEEEeecCcccHHHHHhhcCcceEEeeeeecCCCCHHHHHHHHH
Q psy97 37 EENQIQVLIIFYFSLRQIDIETMRRLHHKVNIVPLIAKADTLTSAEVKKLKK 88 (339)
Q Consensus 37 ~D~rvhv~~~lYf~L~~~Di~~mk~L~~~vNvIPVIaKaD~lt~~E~~~~K~ 88 (339)
+-.-+||| +.|-|-...|.++++++.+.++-||||+-.|..|.+...++..
T Consensus 161 Gad~i~Vd-~~~~g~~~a~~~~I~~i~~~~~~ipIIgNGgI~s~eda~e~l~ 211 (231)
T TIGR00736 161 GFDGIHVD-AMYPGKPYADMDLLKILSEEFNDKIIIGNNSIDDIESAKEMLK 211 (231)
T ss_pred CCCEEEEe-eCCCCCchhhHHHHHHHHHhcCCCcEEEECCcCCHHHHHHHHH
Confidence 44678998 5666654589999999999887799999999999998877654
No 34
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=48.63 E-value=37 Score=28.52 Aligned_cols=48 Identities=23% Similarity=0.204 Sum_probs=28.9
Q ss_pred cCcccHHHHHhhc---CcceEEeeeeecCCCCHHHHHHHHHHHHHHHHhcccccc
Q psy97 51 LRQIDIETMRRLH---HKVNIVPLIAKADTLTSAEVKKLKKKLLEDIEENQIQIY 102 (339)
Q Consensus 51 L~~~Di~~mk~L~---~~vNvIPVIaKaD~lt~~E~~~~K~~I~~~l~~~~I~if 102 (339)
....|-+..+.+. ...++|-|+.|+|.+..++....+ +.++..+.+++
T Consensus 25 ~~~~~~~l~~~l~~~~~~k~~iivlNK~DL~~~~~~~~~~----~~~~~~~~~ii 75 (141)
T cd01857 25 LLFRPPDLERYVKEVDPRKKNILLLNKADLLTEEQRKAWA----EYFKKEGIVVV 75 (141)
T ss_pred cccCCHHHHHHHHhccCCCcEEEEEechhcCCHHHHHHHH----HHHHhcCCeEE
Confidence 4444444444443 357899999999988776654333 34555555554
No 35
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=47.27 E-value=36 Score=27.72 Aligned_cols=42 Identities=19% Similarity=0.251 Sum_probs=30.1
Q ss_pred cCcccHHHHHhhcCc-ceEEeeeeecCCC-CHHHHHHHHHHHHH
Q psy97 51 LRQIDIETMRRLHHK-VNIVPLIAKADTL-TSAEVKKLKKKLLE 92 (339)
Q Consensus 51 L~~~Di~~mk~L~~~-vNvIPVIaKaD~l-t~~E~~~~K~~I~~ 92 (339)
....+..++..+... .+++.|+.|+|.. +.+++......+..
T Consensus 96 ~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~ 139 (168)
T cd04163 96 IGEGDEFILELLKKSKTPVILVLNKIDLVKDKEDLLPLLEKLKE 139 (168)
T ss_pred cCchHHHHHHHHHHhCCCEEEEEEchhccccHHHHHHHHHHHHh
Confidence 355666677777653 8899999999998 67777666655543
No 36
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=46.07 E-value=41 Score=27.38 Aligned_cols=40 Identities=20% Similarity=0.236 Sum_probs=26.2
Q ss_pred ccchHHHHHHhcc-ccceeeeeecCCCC-CHHHHHHHHHHHH
Q psy97 153 RQIDIETMRRLHH-KVNIVPLIAKADTL-TSAEVKKLKKKLL 192 (339)
Q Consensus 153 ~~lDi~~mk~L~~-~vNvIPVIaKaD~L-T~~El~~~K~~I~ 192 (339)
...+..++..+.. ..+++.|++|+|.. +++++..+...+.
T Consensus 97 ~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~ 138 (168)
T cd04163 97 GEGDEFILELLKKSKTPVILVLNKIDLVKDKEDLLPLLEKLK 138 (168)
T ss_pred CchHHHHHHHHHHhCCCEEEEEEchhccccHHHHHHHHHHHH
Confidence 3445555555554 37999999999998 5666665544443
No 37
>PF03129 HGTP_anticodon: Anticodon binding domain; InterPro: IPR004154 tRNA synthetases, or tRNA ligases are involved in protein synthesis. This domain is found in histidyl, glycyl, threonyl and prolyl tRNA synthetases [] it is probably the anticodon binding domain [].; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding; PDB: 1KOG_B 1EVL_D 1EVK_B 1QF6_A 1FYF_B 2I4O_A 2I4M_A 2I4N_A 2I4L_A 1HC7_D ....
Probab=46.03 E-value=29 Score=26.85 Aligned_cols=63 Identities=25% Similarity=0.346 Sum_probs=39.4
Q ss_pred cceeeeeecCCCCCHHHHHHHHHHHHHHHHHcCCcccCCCCCCCCcCHHhHHHhH-hhhcCCCeEEEecCceEe
Q psy97 167 VNIVPLIAKADTLTSAEVKKLKKKLLEDIEENQIQIYQFPECDSDEDEDFKQQDK-ELKESVPFAIIGSNTVIE 239 (339)
Q Consensus 167 vNvIPVIaKaD~LT~~El~~~K~~I~~~l~~~~I~if~f~~~~~~~de~~~~~~~-~l~~~~PFaVI~s~~~~~ 239 (339)
|-|+|+=.+ .++...+-..+.+.|.++||.+.-... +.....+.+ .-...+||.||-+..+..
T Consensus 2 v~Ii~~~~~-----~~~~~~~a~~l~~~L~~~gi~v~~d~~-----~~~~~k~~~~a~~~g~p~~iiiG~~e~~ 65 (94)
T PF03129_consen 2 VVIIPVGKK-----DEEIIEYAQELANKLRKAGIRVELDDS-----DKSLGKQIKYADKLGIPFIIIIGEKELE 65 (94)
T ss_dssp EEEEESSCS-----HHHHHHHHHHHHHHHHHTTSEEEEESS-----SSTHHHHHHHHHHTTESEEEEEEHHHHH
T ss_pred EEEEEeCCC-----cHHHHHHHHHHHHHHHHCCCEEEEECC-----CCchhHHHHHHhhcCCeEEEEECchhHh
Confidence 345665544 567778889999999999987753211 112222222 234678999988765543
No 38
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=44.88 E-value=41 Score=27.77 Aligned_cols=46 Identities=15% Similarity=0.265 Sum_probs=30.2
Q ss_pred ecCcccHHHHHhhc-CcceEEeeeeecCCCCH--HHHHHHHHHHHHHHH
Q psy97 50 SLRQIDIETMRRLH-HKVNIVPLIAKADTLTS--AEVKKLKKKLLEDIE 95 (339)
Q Consensus 50 ~L~~~Di~~mk~L~-~~vNvIPVIaKaD~lt~--~E~~~~K~~I~~~l~ 95 (339)
+....+...++.+. ...++|-|+.|+|.... .+.....+.+.+.+.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~ 145 (174)
T cd01895 97 GITEQDLRIAGLILEEGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLP 145 (174)
T ss_pred CcchhHHHHHHHHHhcCCCEEEEEeccccCCccHHHHHHHHHHHHhhcc
Confidence 34455555555543 45788889999998876 556566666666553
No 39
>KOG1424|consensus
Probab=44.51 E-value=25 Score=37.15 Aligned_cols=49 Identities=27% Similarity=0.428 Sum_probs=36.4
Q ss_pred CcccHH-HHHhhcC-cceEEeeeeecCCCCHHHHHHHHHHHHHHHHhcccccccCC
Q psy97 52 RQIDIE-TMRRLHH-KVNIVPLIAKADTLTSAEVKKLKKKLLEDIEENQIQIYQFP 105 (339)
Q Consensus 52 ~~~Di~-~mk~L~~-~vNvIPVIaKaD~lt~~E~~~~K~~I~~~l~~~~I~if~fp 105 (339)
++-|++ +.|.... +-|+| ++.|||+||+++...-++ .+..++|.+.-|.
T Consensus 191 r~~dLe~Yvke~d~~K~~~L-LvNKaDLl~~~qr~aWa~----YF~~~ni~~vf~S 241 (562)
T KOG1424|consen 191 RSPDLEDYVKEVDPSKANVL-LVNKADLLPPEQRVAWAE----YFRQNNIPVVFFS 241 (562)
T ss_pred CChhHHHHHhccccccceEE-EEehhhcCCHHHHHHHHH----HHHhcCceEEEEe
Confidence 345554 4566555 78877 999999999999976655 6677889987774
No 40
>PF13986 DUF4224: Domain of unknown function (DUF4224)
Probab=43.93 E-value=41 Score=23.84 Aligned_cols=29 Identities=24% Similarity=0.279 Sum_probs=21.3
Q ss_pred CCCCHHHHHHH-----HHHHHHHHHHcCCcccCC
Q psy97 177 DTLTSAEVKKL-----KKKLLEDIEENQIQIYQF 205 (339)
Q Consensus 177 D~LT~~El~~~-----K~~I~~~l~~~~I~if~f 205 (339)
+.||++|+..+ +..-.+.|..+||+++.-
T Consensus 1 ~fLT~~El~elTG~k~~~~Q~~~L~~~Gi~~~~~ 34 (47)
T PF13986_consen 1 EFLTDEELQELTGYKRPSKQIRWLRRNGIPFVVR 34 (47)
T ss_pred CCCCHHHHHHHHCCCCHHHHHHHHHHCCCeeEEC
Confidence 46899999885 355567788888888743
No 41
>PF10437 Lip_prot_lig_C: Bacterial lipoate protein ligase C-terminus; InterPro: IPR019491 This is the C-terminal domain of a bacterial lipoate protein ligase. There is no conservation between this C terminus and that of vertebrate lipoate protein ligase C-termini, but both are associated with IPR004143 from INTERPRO, further upstream. This C-terminal domain is more stable than IPR004143 from INTERPRO and the hypothesis is that the C-terminal domain has a role in recognising the lipoyl domain and/or transferring the lipoyl group onto it from the lipoyl-AMP intermediate. C-terminal fragments of length 172 to 193 amino acid residues are observed in the eubacterial enzymes whereas in their archaeal counterparts the C-terminal segment is significantly smaller, ranging in size from 87 to 107 amino acid residues. ; PDB: 1X2G_A 3A7R_A 3A7A_A 1X2H_C 1VQZ_A 3R07_C.
Probab=43.64 E-value=14 Score=28.90 Aligned_cols=31 Identities=39% Similarity=0.773 Sum_probs=19.8
Q ss_pred eeeccCCceeeeec----CC------------CCCchHHHHHhhhhh
Q psy97 245 VRGRQYPWGVVEVE----NP------------KHSDFNKLRNMLIST 275 (339)
Q Consensus 245 ~~~R~y~WG~veve----n~------------~h~DF~~Lr~~Li~~ 275 (339)
.+.++|+||+|+|. +. ...|...|-+.|.|.
T Consensus 8 ~~~~rf~~G~v~v~~~V~~G~I~~i~i~gDf~~~~~i~~le~~L~G~ 54 (86)
T PF10437_consen 8 SKERRFPWGTVEVHLNVKNGIIKDIKIYGDFFGPEDIEELEEALIGC 54 (86)
T ss_dssp EEEEEETTEEEEEEEEEETTEEEEEEEEECBS-CCCHHHHHHHHTTC
T ss_pred eeeeEcCCceEEEEEEEECCEEEEEEEECCCCCchHHHHHHHHHHhc
Confidence 45689999999864 21 224566666666654
No 42
>KOG1490|consensus
Probab=40.95 E-value=22 Score=37.56 Aligned_cols=49 Identities=14% Similarity=0.353 Sum_probs=42.3
Q ss_pred HHHHHhccccceeeeeecCCCCCHHHHHHHHHHHHHHHHHcC-CcccCCC
Q psy97 158 ETMRRLHHKVNIVPLIAKADTLTSAEVKKLKKKLLEDIEENQ-IQIYQFP 206 (339)
Q Consensus 158 ~~mk~L~~~vNvIPVIaKaD~LT~~El~~~K~~I~~~l~~~~-I~if~f~ 206 (339)
..||.|..--.+|-|++|.|.|.++.+..=++.+.+++..-| +++++-.
T Consensus 273 hsIKpLFaNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~v~v~~tS 322 (620)
T KOG1490|consen 273 HSIKPLFANKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGNVKVVQTS 322 (620)
T ss_pred HHhHHHhcCCceEEEeecccccCccccCHHHHHHHHHHHhccCceEEEec
Confidence 568888887789999999999999999998889999998776 8887653
No 43
>COG1162 Predicted GTPases [General function prediction only]
Probab=39.61 E-value=49 Score=32.60 Aligned_cols=119 Identities=15% Similarity=0.248 Sum_probs=66.4
Q ss_pred hccccceeeeeecCCCCCHHHHHHHHHHHHHHHHHcCCcccCCCCCCCCcCHHhHHHhHhhhcCCCeEE-EecCc-----
Q psy97 163 LHHKVNIVPLIAKADTLTSAEVKKLKKKLLEDIEENQIQIYQFPECDSDEDEDFKQQDKELKESVPFAI-IGSNT----- 236 (339)
Q Consensus 163 L~~~vNvIPVIaKaD~LT~~El~~~K~~I~~~l~~~~I~if~f~~~~~~~de~~~~~~~~l~~~~PFaV-I~s~~----- 236 (339)
=+.....|.||+|+|++++++... +.......+.|-++|....... +...+....+... .+| +|+.-
T Consensus 107 e~~gi~pvIvlnK~DL~~~~~~~~--~~~~~~y~~~gy~v~~~s~~~~---~~~~~l~~~l~~~--~svl~GqSGVGKSS 179 (301)
T COG1162 107 EAGGIEPVIVLNKIDLLDDEEAAV--KELLREYEDIGYPVLFVSAKNG---DGLEELAELLAGK--ITVLLGQSGVGKST 179 (301)
T ss_pred HHcCCcEEEEEEccccCcchHHHH--HHHHHHHHhCCeeEEEecCcCc---ccHHHHHHHhcCC--eEEEECCCCCcHHH
Confidence 345566777789999999999876 5666777778888875431111 1111222222222 122 11110
Q ss_pred --------------eE-ee--CCe--eeeeccCC--ceeeeecCCCCCchHH--HHHhhhhhhHHHHHHhhhHHH
Q psy97 237 --------------VI-EV--AGT--KVRGRQYP--WGVVEVENPKHSDFNK--LRNMLISTHMQDLKDVTEDVH 288 (339)
Q Consensus 237 --------------~~-~~--~g~--~~~~R~y~--WG~veven~~h~DF~~--Lr~~Li~~hl~dLk~~T~~~~ 288 (339)
.+ +. .|+ ....+-|+ -|-.-++.|-.+-|.. +..--+..+.-|+.+....++
T Consensus 180 LiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG~iiDTPGf~~~~l~~~~~e~l~~~F~ef~~~~~~Ck 254 (301)
T COG1162 180 LINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGGWIIDTPGFRSLGLAHLEPEDLVQAFPEFAELARQCK 254 (301)
T ss_pred HHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCCCEEEeCCCCCccCcccCCHHHHHHHhHHHHHHhcCCC
Confidence 11 11 121 22333344 4777788888887776 666666677777777765543
No 44
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=38.84 E-value=42 Score=33.33 Aligned_cols=53 Identities=9% Similarity=0.177 Sum_probs=36.4
Q ss_pred EEEEEEEe--ecCcccHHHHHh-hcCcceEEeeeeecCCCCHHHHHHHHHHHHHHHH
Q psy97 42 QVLIIFYF--SLRQIDIETMRR-LHHKVNIVPLIAKADTLTSAEVKKLKKKLLEDIE 95 (339)
Q Consensus 42 hv~~~lYf--~L~~~Di~~mk~-L~~~vNvIPVIaKaD~lt~~E~~~~K~~I~~~l~ 95 (339)
+++++++. .-..-||+.+|. +-+... |-||.|+|.+..+........+...|.
T Consensus 169 ~aD~vlvv~~p~~gd~iq~~k~gi~E~aD-IiVVNKaDl~~~~~a~~~~~el~~~L~ 224 (332)
T PRK09435 169 MVDFFLLLQLPGAGDELQGIKKGIMELAD-LIVINKADGDNKTAARRAAAEYRSALR 224 (332)
T ss_pred hCCEEEEEecCCchHHHHHHHhhhhhhhh-eEEeehhcccchhHHHHHHHHHHHHHh
Confidence 35555665 345678888876 555555 569999999988777666666666664
No 45
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=38.67 E-value=3.1e+02 Score=28.61 Aligned_cols=60 Identities=20% Similarity=0.267 Sum_probs=43.6
Q ss_pred eEEEEEc-----ccccchHHH---HHHhccccceeeeeecCCCCCHHHHHHHHHHHHHHHHHcCCcccC
Q psy97 144 VLIIFYF-----SLRQIDIET---MRRLHHKVNIVPLIAKADTLTSAEVKKLKKKLLEDIEENQIQIYQ 204 (339)
Q Consensus 144 vh~~lYf-----gl~~lDi~~---mk~L~~~vNvIPVIaKaD~LT~~El~~~K~~I~~~l~~~~I~if~ 204 (339)
+++++.+ |+.+-..|. +.-| ..-|.|-||+|+|...++.++..-++|...+.-...++|.
T Consensus 74 ~d~alLvV~~deGl~~qtgEhL~iLdll-gi~~giivltk~D~~d~~r~e~~i~~Il~~l~l~~~~i~~ 141 (447)
T COG3276 74 IDYALLVVAADEGLMAQTGEHLLILDLL-GIKNGIIVLTKADRVDEARIEQKIKQILADLSLANAKIFK 141 (447)
T ss_pred CceEEEEEeCccCcchhhHHHHHHHHhc-CCCceEEEEeccccccHHHHHHHHHHHHhhcccccccccc
Confidence 4455555 777777653 4434 4458899999999999999988888888888755556643
No 46
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=38.57 E-value=64 Score=26.62 Aligned_cols=44 Identities=16% Similarity=0.277 Sum_probs=27.7
Q ss_pred cccchHHHHHHhc-cccceeeeeecCCCCCH--HHHHHHHHHHHHHH
Q psy97 152 LRQIDIETMRRLH-HKVNIVPLIAKADTLTS--AEVKKLKKKLLEDI 195 (339)
Q Consensus 152 l~~lDi~~mk~L~-~~vNvIPVIaKaD~LT~--~El~~~K~~I~~~l 195 (339)
....+..+++.+. ...+++-|++|+|.+.. .+.....+.+.+.+
T Consensus 98 ~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~ 144 (174)
T cd01895 98 ITEQDLRIAGLILEEGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKL 144 (174)
T ss_pred cchhHHHHHHHHHhcCCCEEEEEeccccCCccHHHHHHHHHHHHhhc
Confidence 3444444444442 45788889999998877 45555555555544
No 47
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=38.35 E-value=44 Score=28.46 Aligned_cols=28 Identities=7% Similarity=0.202 Sum_probs=19.9
Q ss_pred HHHHhccccceeeeeecCCCCCHHHHHH
Q psy97 159 TMRRLHHKVNIVPLIAKADTLTSAEVKK 186 (339)
Q Consensus 159 ~mk~L~~~vNvIPVIaKaD~LT~~El~~ 186 (339)
+++......++|.|++|+|.+.++++..
T Consensus 32 ~l~~~~~~~p~ilVlNKiDl~~~~~~~~ 59 (157)
T cd01858 32 YLKKEKPHKHLIFVLNKCDLVPTWVTAR 59 (157)
T ss_pred HHHhccCCCCEEEEEEchhcCCHHHHHH
Confidence 4444333478999999999988776543
No 48
>PRK00089 era GTPase Era; Reviewed
Probab=37.63 E-value=64 Score=30.48 Aligned_cols=49 Identities=18% Similarity=0.310 Sum_probs=33.4
Q ss_pred EEEEEEe-----ecCcccHHHHHhhcC-cceEEeeeeecCCC-CHHHHHHHHHHHH
Q psy97 43 VLIIFYF-----SLRQIDIETMRRLHH-KVNIVPLIAKADTL-TSAEVKKLKKKLL 91 (339)
Q Consensus 43 v~~~lYf-----~L~~~Di~~mk~L~~-~vNvIPVIaKaD~l-t~~E~~~~K~~I~ 91 (339)
+++++|. ++...+..+++.+.. .+.+|-|+.|+|.+ +.+++......+.
T Consensus 85 ~D~il~vvd~~~~~~~~~~~i~~~l~~~~~pvilVlNKiDl~~~~~~l~~~~~~l~ 140 (292)
T PRK00089 85 VDLVLFVVDADEKIGPGDEFILEKLKKVKTPVILVLNKIDLVKDKEELLPLLEELS 140 (292)
T ss_pred CCEEEEEEeCCCCCChhHHHHHHHHhhcCCCEEEEEECCcCCCCHHHHHHHHHHHH
Confidence 4444554 456677777777764 57899999999999 5566655444443
No 49
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=36.40 E-value=56 Score=32.65 Aligned_cols=33 Identities=18% Similarity=0.171 Sum_probs=24.2
Q ss_pred ecCcccHHHHHhhcC-cceEEeeeeecCCCCHHH
Q psy97 50 SLRQIDIETMRRLHH-KVNIVPLIAKADTLTSAE 82 (339)
Q Consensus 50 ~L~~~Di~~mk~L~~-~vNvIPVIaKaD~lt~~E 82 (339)
++.+.|.++.+.|.. ...+|-|+.|+|....++
T Consensus 91 ~~~~~d~~i~~~l~~~~~piilVvNK~D~~~~~~ 124 (429)
T TIGR03594 91 GLTPEDEEIAKWLRKSGKPVILVANKIDGKKEDA 124 (429)
T ss_pred CCCHHHHHHHHHHHHhCCCEEEEEECccCCcccc
Confidence 678888766666642 466889999999886543
No 50
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=36.30 E-value=92 Score=27.27 Aligned_cols=44 Identities=16% Similarity=0.355 Sum_probs=31.5
Q ss_pred ccccchHHHHHHhc-cccceeeeeecCCCCCHHHHHHHHHHHHHHH
Q psy97 151 SLRQIDIETMRRLH-HKVNIVPLIAKADTLTSAEVKKLKKKLLEDI 195 (339)
Q Consensus 151 gl~~lDi~~mk~L~-~~vNvIPVIaKaD~LT~~El~~~K~~I~~~l 195 (339)
|+.+...+.++.+. ..+++|-||+|.|.+ ..++....+.+.+.+
T Consensus 106 g~~~~~~~~l~~~~~~~~p~ivvlNK~D~~-~~~~~~~~~~~~~~l 150 (188)
T PF00009_consen 106 GIQPQTEEHLKILRELGIPIIVVLNKMDLI-EKELEEIIEEIKEKL 150 (188)
T ss_dssp BSTHHHHHHHHHHHHTT-SEEEEEETCTSS-HHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccceEEeeeeccch-hhhHHHHHHHHHHHh
Confidence 66666666666553 456799999999999 777777777777555
No 51
>COG1159 Era GTPase [General function prediction only]
Probab=36.08 E-value=1.9e+02 Score=28.59 Aligned_cols=133 Identities=15% Similarity=0.166 Sum_probs=0.0
Q ss_pred ceeEEEEEc-----ccccchHHHHHHhcc-ccceeeeeecCCCCCHHH-HHHHHHHHHHHHHHc----------------
Q psy97 142 TKVLIIFYF-----SLRQIDIETMRRLHH-KVNIVPLIAKADTLTSAE-VKKLKKKLLEDIEEN---------------- 198 (339)
Q Consensus 142 ~rvh~~lYf-----gl~~lDi~~mk~L~~-~vNvIPVIaKaD~LT~~E-l~~~K~~I~~~l~~~---------------- 198 (339)
..+...++. ++++-|--.+..|.+ .+++|-+|.|.|...+.. +..+.+.....+...
T Consensus 84 ~dvDlilfvvd~~~~~~~~d~~il~~lk~~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f~~ivpiSA~~g~n~~~L 163 (298)
T COG1159 84 KDVDLILFVVDADEGWGPGDEFILEQLKKTKTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPFKEIVPISALKGDNVDTL 163 (298)
T ss_pred ccCcEEEEEEeccccCCccHHHHHHHHhhcCCCeEEEEEccccCCcHHHHHHHHHHHHhhCCcceEEEeeccccCCHHHH
Q ss_pred ----------CCcccCCCCCCCCcCHHhHHHh------HhhhcCCCeEEEecCceEeeCCeeeeeccCCceeeeecCCCC
Q psy97 199 ----------QIQIYQFPECDSDEDEDFKQQD------KELKESVPFAIIGSNTVIEVAGTKVRGRQYPWGVVEVENPKH 262 (339)
Q Consensus 199 ----------~I~if~f~~~~~~~de~~~~~~------~~l~~~~PFaVI~s~~~~~~~g~~~~~R~y~WG~veven~~h 262 (339)
|...|+...-.+..+.-.+.+. ..+++.+|+++-.-.+..+.+ -.+--+-.+++-||...|
T Consensus 164 ~~~i~~~Lpeg~~~yp~d~itD~~~rf~~aEiiREk~~~~l~eElPhsv~VeIe~~~~~---~~~~~~I~a~I~Ver~sQ 240 (298)
T COG1159 164 LEIIKEYLPEGPWYYPEDQITDRPERFLAAEIIREKLLLLLREELPHSVAVEIEEFEER---EKGLLKIHATIYVERESQ 240 (298)
T ss_pred HHHHHHhCCCCCCcCChhhccCChHHHHHHHHHHHHHHHhcccccCceEEEEEEEEEec---CCCeEEEEEEEEEecCCc
Q ss_pred CchHHHHHhhhhhhHHHHHHh
Q psy97 263 SDFNKLRNMLISTHMQDLKDV 283 (339)
Q Consensus 263 ~DF~~Lr~~Li~~hl~dLk~~ 283 (339)
|.++||..-+-||..
T Consensus 241 ------K~IiIGk~G~~iK~I 255 (298)
T COG1159 241 ------KGIIIGKNGAMIKKI 255 (298)
T ss_pred ------cceEECCCcHHHHHH
No 52
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=35.07 E-value=55 Score=27.86 Aligned_cols=31 Identities=10% Similarity=0.049 Sum_probs=21.2
Q ss_pred cccHHHHHhhc---CcceEEeeeeecCCCCHHHH
Q psy97 53 QIDIETMRRLH---HKVNIVPLIAKADTLTSAEV 83 (339)
Q Consensus 53 ~~Di~~mk~L~---~~vNvIPVIaKaD~lt~~E~ 83 (339)
+.+-.+.+.|. ...++|.|+.|+|.+..+++
T Consensus 24 ~~~~~i~~~l~~~~~~~p~ilVlNKiDl~~~~~~ 57 (157)
T cd01858 24 TRCKHVEEYLKKEKPHKHLIFVLNKCDLVPTWVT 57 (157)
T ss_pred ccCHHHHHHHHhccCCCCEEEEEEchhcCCHHHH
Confidence 33444444443 34789999999999877654
No 53
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=34.90 E-value=67 Score=26.91 Aligned_cols=43 Identities=21% Similarity=0.257 Sum_probs=26.8
Q ss_pred HHHHHhccccceeeeeecCCCCCHHHHHHHHHHHHHHHHHcCCcccC
Q psy97 158 ETMRRLHHKVNIVPLIAKADTLTSAEVKKLKKKLLEDIEENQIQIYQ 204 (339)
Q Consensus 158 ~~mk~L~~~vNvIPVIaKaD~LT~~El~~~K~~I~~~l~~~~I~if~ 204 (339)
+++++.....+++.|++|+|++.+++.... .+.++..+.+++.
T Consensus 34 ~~l~~~~~~k~~iivlNK~DL~~~~~~~~~----~~~~~~~~~~ii~ 76 (141)
T cd01857 34 RYVKEVDPRKKNILLLNKADLLTEEQRKAW----AEYFKKEGIVVVF 76 (141)
T ss_pred HHHHhccCCCcEEEEEechhcCCHHHHHHH----HHHHHhcCCeEEE
Confidence 344444345689999999999877665433 2345555555543
No 54
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=33.04 E-value=1.2e+02 Score=28.44 Aligned_cols=69 Identities=19% Similarity=0.405 Sum_probs=43.9
Q ss_pred HHHHHhhcCcceEEeeeeecCCCCHHHHHH----HHHHHHHHHHhcc---cccccCCCCCCCcchHHHHhhhhhhcccc
Q psy97 56 IETMRRLHHKVNIVPLIAKADTLTSAEVKK----LKKKLLEDIEENQ---IQIYQFPECDSDEDEDFKQQDKELKESVP 127 (339)
Q Consensus 56 i~~mk~L~~~vNvIPVIaKaD~lt~~E~~~----~K~~I~~~l~~~~---I~if~fp~~~~~~d~~~~~~~~~ik~~lP 127 (339)
++.+.+.++..+|-=.|-|.|.+++++... .++.|.+.+...+ +.+|.-...|. .=+.+-.+.+...+|
T Consensus 102 i~~l~~~sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~TSI~D~---Sly~A~S~Ivq~LiP 177 (232)
T PF04670_consen 102 IEALRQYSPNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDITFFLTSIWDE---SLYEAWSKIVQKLIP 177 (232)
T ss_dssp HHHHHHHSTT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEEE-TTST---HHHHHHHHHHHTTST
T ss_pred HHHHHHhCCCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccceEEEeccCcCc---HHHHHHHHHHHHHcc
Confidence 445667889999999999999999998877 4557777888877 66664433322 123344455555666
No 55
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=32.61 E-value=2e+02 Score=23.48 Aligned_cols=31 Identities=13% Similarity=0.155 Sum_probs=22.5
Q ss_pred cceeeeeecCCCCCHHHHHHHHHHHHHHHHH
Q psy97 167 VNIVPLIAKADTLTSAEVKKLKKKLLEDIEE 197 (339)
Q Consensus 167 vNvIPVIaKaD~LT~~El~~~K~~I~~~l~~ 197 (339)
.+++-|++|+|...........+.+.+.++.
T Consensus 105 ~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~ 135 (164)
T cd04171 105 KRGLVVLTKADLVDEDWLELVEEEIRELLAG 135 (164)
T ss_pred CcEEEEEECccccCHHHHHHHHHHHHHHHHh
Confidence 3789999999998776555555666666654
No 56
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=32.56 E-value=74 Score=25.92 Aligned_cols=34 Identities=21% Similarity=0.338 Sum_probs=22.9
Q ss_pred ecCcccHHHHHhhc-CcceEEeeeeecCCCCHHHH
Q psy97 50 SLRQIDIETMRRLH-HKVNIVPLIAKADTLTSAEV 83 (339)
Q Consensus 50 ~L~~~Di~~mk~L~-~~vNvIPVIaKaD~lt~~E~ 83 (339)
+....+.++.+.+. ....+|.|+.|+|....++.
T Consensus 89 ~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~ 123 (157)
T cd01894 89 GLTPADEEIAKYLRKSKKPVILVVNKVDNIKEEDE 123 (157)
T ss_pred cCCccHHHHHHHHHhcCCCEEEEEECcccCChHHH
Confidence 34455655545443 24789999999999876554
No 57
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=32.41 E-value=31 Score=28.17 Aligned_cols=40 Identities=20% Similarity=0.403 Sum_probs=28.2
Q ss_pred EEEEEEe-----ecCcccHHHHHhhcCcceEEeeeeecCCCCHHHH
Q psy97 43 VLIIFYF-----SLRQIDIETMRRLHHKVNIVPLIAKADTLTSAEV 83 (339)
Q Consensus 43 v~~~lYf-----~L~~~Di~~mk~L~~~vNvIPVIaKaD~lt~~E~ 83 (339)
+++++|+ .....+...++. ....++|-|+.|+|..+..+.
T Consensus 81 ~~~~v~v~d~~~~~~~~~~~~~~~-~~~~~vi~v~nK~D~~~~~~~ 125 (157)
T cd04164 81 ADLVLFVIDASRGLDEEDLEILEL-PADKPIIVVLNKSDLLPDSEL 125 (157)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHh-hcCCCEEEEEEchhcCCcccc
Confidence 3344665 355667766666 567899999999999876654
No 58
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=32.19 E-value=1.7e+02 Score=24.01 Aligned_cols=37 Identities=14% Similarity=0.208 Sum_probs=25.6
Q ss_pred ceEEeeeeecCCCCHHHHHHHHHHHHHHHHh---cccccc
Q psy97 66 VNIVPLIAKADTLTSAEVKKLKKKLLEDIEE---NQIQIY 102 (339)
Q Consensus 66 vNvIPVIaKaD~lt~~E~~~~K~~I~~~l~~---~~I~if 102 (339)
.++|-|+.|+|....+........+.+.++. .+..++
T Consensus 105 ~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (164)
T cd04171 105 KRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIF 144 (164)
T ss_pred CcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEE
Confidence 3789999999988766555555666666665 344454
No 59
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=32.16 E-value=1.1e+02 Score=28.91 Aligned_cols=46 Identities=20% Similarity=0.495 Sum_probs=32.7
Q ss_pred HHHHHhccccceeeeeecCCCCCHHHHHHH----HHHHHHHHHHcC---Cccc
Q psy97 158 ETMRRLHHKVNIVPLIAKADTLTSAEVKKL----KKKLLEDIEENQ---IQIY 203 (339)
Q Consensus 158 ~~mk~L~~~vNvIPVIaKaD~LT~~El~~~----K~~I~~~l~~~~---I~if 203 (339)
+.+.+.+...++--.|+|.|++++++.... ++.|.+.+...+ +.+|
T Consensus 103 ~~l~~~sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~ 155 (232)
T PF04670_consen 103 EALRQYSPNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDITFF 155 (232)
T ss_dssp HHHHHHSTT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEE
T ss_pred HHHHHhCCCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccceEEE
Confidence 557778889999999999999999977764 466666677777 5555
No 60
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=31.95 E-value=74 Score=26.61 Aligned_cols=22 Identities=18% Similarity=0.347 Sum_probs=17.7
Q ss_pred cccceeeeeecCCCCCHHHHHH
Q psy97 165 HKVNIVPLIAKADTLTSAEVKK 186 (339)
Q Consensus 165 ~~vNvIPVIaKaD~LT~~El~~ 186 (339)
...++|.|++|+|.....+...
T Consensus 112 ~~~pvilv~NK~Dl~~~~~~~~ 133 (168)
T cd01897 112 KNKPVIVVLNKIDLLTFEDLSE 133 (168)
T ss_pred CcCCeEEEEEccccCchhhHHH
Confidence 3579999999999988776544
No 61
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=31.74 E-value=89 Score=27.06 Aligned_cols=33 Identities=15% Similarity=0.087 Sum_probs=23.2
Q ss_pred ecCcccHHHHHhhcCcceEEeeeeecCCCCHHHH
Q psy97 50 SLRQIDIETMRRLHHKVNIVPLIAKADTLTSAEV 83 (339)
Q Consensus 50 ~L~~~Di~~mk~L~~~vNvIPVIaKaD~lt~~E~ 83 (339)
.+...+..++..+.. .++|-|+.|+|+++.++.
T Consensus 32 ~~~~~~~~i~~~~~~-k~~ilVlNK~Dl~~~~~~ 64 (171)
T cd01856 32 PLSSRNPLLEKILGN-KPRIIVLNKADLADPKKT 64 (171)
T ss_pred ccCcCChhhHhHhcC-CCEEEEEehhhcCChHHH
Confidence 344555666776654 588999999999866554
No 62
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=31.05 E-value=75 Score=26.55 Aligned_cols=22 Identities=18% Similarity=0.347 Sum_probs=17.7
Q ss_pred CcceEEeeeeecCCCCHHHHHH
Q psy97 64 HKVNIVPLIAKADTLTSAEVKK 85 (339)
Q Consensus 64 ~~vNvIPVIaKaD~lt~~E~~~ 85 (339)
...++|.|+.|+|..+..+...
T Consensus 112 ~~~pvilv~NK~Dl~~~~~~~~ 133 (168)
T cd01897 112 KNKPVIVVLNKIDLLTFEDLSE 133 (168)
T ss_pred CcCCeEEEEEccccCchhhHHH
Confidence 3688999999999988776654
No 63
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=29.84 E-value=1.8e+02 Score=25.87 Aligned_cols=31 Identities=10% Similarity=0.119 Sum_probs=22.7
Q ss_pred cceeeeeecCCCCCHHHHHHHHHHHHHHHHH
Q psy97 167 VNIVPLIAKADTLTSAEVKKLKKKLLEDIEE 197 (339)
Q Consensus 167 vNvIPVIaKaD~LT~~El~~~K~~I~~~l~~ 197 (339)
.++|-|++|.|....++.....+.+++.+..
T Consensus 138 ~~iiivvNK~Dl~~~~~~~~~~~~i~~~~~~ 168 (203)
T cd01888 138 KHIIIVQNKIDLVKEEQALENYEQIKKFVKG 168 (203)
T ss_pred CcEEEEEEchhccCHHHHHHHHHHHHHHHhc
Confidence 3677899999999877766666666666554
No 64
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=29.22 E-value=1.2e+02 Score=24.58 Aligned_cols=32 Identities=19% Similarity=0.313 Sum_probs=20.5
Q ss_pred ccchHHHHHHhc-cccceeeeeecCCCCCHHHH
Q psy97 153 RQIDIETMRRLH-HKVNIVPLIAKADTLTSAEV 184 (339)
Q Consensus 153 ~~lDi~~mk~L~-~~vNvIPVIaKaD~LT~~El 184 (339)
...+..+.+.+. ...+++.|++|+|....++.
T Consensus 91 ~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~ 123 (157)
T cd01894 91 TPADEEIAKYLRKSKKPVILVVNKVDNIKEEDE 123 (157)
T ss_pred CccHHHHHHHHHhcCCCEEEEEECcccCChHHH
Confidence 334444333332 24789999999999876654
No 65
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=29.00 E-value=1.5e+02 Score=26.69 Aligned_cols=49 Identities=18% Similarity=0.152 Sum_probs=31.0
Q ss_pred ccccchHHHHHHhccc-cc-eeeeeecCCCCCHHHHH-HHHHHHHHHHHHcC
Q psy97 151 SLRQIDIETMRRLHHK-VN-IVPLIAKADTLTSAEVK-KLKKKLLEDIEENQ 199 (339)
Q Consensus 151 gl~~lDi~~mk~L~~~-vN-vIPVIaKaD~LT~~El~-~~K~~I~~~l~~~~ 199 (339)
|+.+.+.+.++.+... +. +|-||+|.|....++.. ..++.+.+.|.+.|
T Consensus 101 g~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g 152 (195)
T cd01884 101 GPMPQTREHLLLARQVGVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYG 152 (195)
T ss_pred CCcHHHHHHHHHHHHcCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhc
Confidence 5666666655555432 33 66789999988655543 35667777776544
No 66
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=28.86 E-value=1.9e+02 Score=21.93 Aligned_cols=52 Identities=10% Similarity=0.128 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHcCCcccCCCCCCCCcCHHhHHHh-HhhhcCCCeEEEecCceE
Q psy97 182 AEVKKLKKKLLEDIEENQIQIYQFPECDSDEDEDFKQQD-KELKESVPFAIIGSNTVI 238 (339)
Q Consensus 182 ~El~~~K~~I~~~l~~~~I~if~f~~~~~~~de~~~~~~-~~l~~~~PFaVI~s~~~~ 238 (339)
++....-..+...|..+|+++.-..... ....+. ..-+...||.||-+..+.
T Consensus 14 ~~~~~~a~~la~~Lr~~g~~v~~d~~~~-----~l~k~i~~a~~~g~~~~iiiG~~e~ 66 (94)
T cd00861 14 EVQQELAEKLYAELQAAGVDVLLDDRNE-----RPGVKFADADLIGIPYRIVVGKKSA 66 (94)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEECCCC-----CcccchhHHHhcCCCEEEEECCchh
Confidence 5555667888899999999885321111 111111 122467899998775543
No 67
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=28.76 E-value=2.1e+02 Score=25.50 Aligned_cols=50 Identities=12% Similarity=0.111 Sum_probs=30.7
Q ss_pred ccHHHHHhhc--CcceEEeeeeecCCCCHHHHHHHHHHHHHHHHhc---cccccc
Q psy97 54 IDIETMRRLH--HKVNIVPLIAKADTLTSAEVKKLKKKLLEDIEEN---QIQIYQ 103 (339)
Q Consensus 54 ~Di~~mk~L~--~~vNvIPVIaKaD~lt~~E~~~~K~~I~~~l~~~---~I~if~ 103 (339)
-..+.+..+. ...++|-|+.|.|.....+.....+.+.+.+... +..++.
T Consensus 124 ~t~~~l~~~~~~~~~~iiivvNK~Dl~~~~~~~~~~~~i~~~~~~~~~~~~~i~~ 178 (203)
T cd01888 124 QTSEHLAALEIMGLKHIIIVQNKIDLVKEEQALENYEQIKKFVKGTIAENAPIIP 178 (203)
T ss_pred chHHHHHHHHHcCCCcEEEEEEchhccCHHHHHHHHHHHHHHHhccccCCCcEEE
Confidence 3344444432 2236788999999988777666666666666543 444443
No 68
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=28.27 E-value=1e+02 Score=30.77 Aligned_cols=56 Identities=14% Similarity=0.201 Sum_probs=39.1
Q ss_pred eEEEEEEEe---ecCcccHHHHHhhc-CcceEEeeeeecCCC-CHHHHHHHHHHHHHHHHh
Q psy97 41 IQVLIIFYF---SLRQIDIETMRRLH-HKVNIVPLIAKADTL-TSAEVKKLKKKLLEDIEE 96 (339)
Q Consensus 41 vhv~~~lYf---~L~~~Di~~mk~L~-~~vNvIPVIaKaD~l-t~~E~~~~K~~I~~~l~~ 96 (339)
.|+++++|= ++...|...++.+. ....+|-|+.|.|.+ ..+....++..+.+.+..
T Consensus 255 ad~~ilV~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~ 315 (429)
T TIGR03594 255 ADVVLLVLDATEGITEQDLRIAGLILEAGKALVIVVNKWDLVKDEKTREEFKKELRRKLPF 315 (429)
T ss_pred CCEEEEEEECCCCccHHHHHHHHHHHHcCCcEEEEEECcccCCCHHHHHHHHHHHHHhccc
Confidence 355544442 67777887777664 357899999999998 666676777777666543
No 69
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=28.02 E-value=63 Score=29.45 Aligned_cols=37 Identities=30% Similarity=0.451 Sum_probs=31.8
Q ss_pred cCcccHHHHHhhcCcceEEeeeeecCCCCHHHHHHHHH
Q psy97 51 LRQIDIETMRRLHHKVNIVPLIAKADTLTSAEVKKLKK 88 (339)
Q Consensus 51 L~~~Di~~mk~L~~~vNvIPVIaKaD~lt~~E~~~~K~ 88 (339)
.+..|++.++++.+.++ +|||+-.+.-|.+++..+.+
T Consensus 174 ~~G~d~~~i~~l~~~~~-ipvia~GGi~~~~di~~~~~ 210 (233)
T PRK00748 174 LSGPNVEATRELAAAVP-IPVIASGGVSSLDDIKALKG 210 (233)
T ss_pred cCCCCHHHHHHHHHhCC-CCEEEeCCCCCHHHHHHHHH
Confidence 34578999999999988 99999999999999877655
No 70
>PRK13793 nicotinamide-nucleotide adenylyltransferase; Provisional
Probab=27.59 E-value=4.4e+02 Score=24.31 Aligned_cols=100 Identities=18% Similarity=0.313 Sum_probs=53.1
Q ss_pred ceeeeeec-------CCCCCHHHHHHHHHHHHHHHH-HcCCcccCCCCCCCCcCHHhHHHhHhhhcCCCeEEEecCceEe
Q psy97 168 NIVPLIAK-------ADTLTSAEVKKLKKKLLEDIE-ENQIQIYQFPECDSDEDEDFKQQDKELKESVPFAIIGSNTVIE 239 (339)
Q Consensus 168 NvIPVIaK-------aD~LT~~El~~~K~~I~~~l~-~~~I~if~f~~~~~~~de~~~~~~~~l~~~~PFaVI~s~~~~~ 239 (339)
.||-.|+= .+-+|-.|...+ |+..|. ..+.++|-.|..|...+.. -....+..+| +|++++..+.
T Consensus 33 evII~IGSA~~s~t~~NPFTa~ER~~M---I~~aL~e~~~~rv~~ipi~D~~~~~~---Wv~~V~~~v~-~v~~~n~~V~ 105 (196)
T PRK13793 33 YVILALGSAQMERNIKNPFLAIEREQM---ILSNFSLDEQKRIRFVHVVDVYNDEK---WVKQVKSLVN-GVIEPNSKVG 105 (196)
T ss_pred EEEEEEccCCCCCCCCCCCCHHHHHHH---HHHhcchhhcceEEEEecCCccchhH---HHHHHHHhch-hhccCCCcce
Confidence 55656644 456888888765 333332 1455777666433222211 1122333334 2333333221
Q ss_pred e-----CCeeeeeccCC-ceeeeecCC-CCCchHHHHHhhhh
Q psy97 240 V-----AGTKVRGRQYP-WGVVEVENP-KHSDFNKLRNMLIS 274 (339)
Q Consensus 240 ~-----~g~~~~~R~y~-WG~veven~-~h~DF~~Lr~~Li~ 274 (339)
. +......|.|| ||.+++.+. .--.=+.+|+.++.
T Consensus 106 ~~g~~k~e~s~~l~~fpew~~v~~~~~r~~~SaT~IR~~~~~ 147 (196)
T PRK13793 106 LIGHFKDESSYYLRLFPEWVMVELDSLKDSISATPMREAYYQ 147 (196)
T ss_pred eecccccCceEEEEeCCCCceeecccccCccchHHHHHHHHc
Confidence 1 12347788997 999998764 33345777888764
No 71
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=27.50 E-value=78 Score=29.86 Aligned_cols=42 Identities=14% Similarity=0.160 Sum_probs=34.4
Q ss_pred EEEcccccchHHHHHHhccccceeeeeecCCCCCHHHHHHHH
Q psy97 147 IFYFSLRQIDIETMRRLHHKVNIVPLIAKADTLTSAEVKKLK 188 (339)
Q Consensus 147 ~lYfgl~~lDi~~mk~L~~~vNvIPVIaKaD~LT~~El~~~K 188 (339)
+.|.|-...|.++++++.+.++-||||+=.|-.|.+....+.
T Consensus 169 ~~~~g~~~a~~~~I~~i~~~~~~ipIIgNGgI~s~eda~e~l 210 (231)
T TIGR00736 169 AMYPGKPYADMDLLKILSEEFNDKIIIGNNSIDDIESAKEML 210 (231)
T ss_pred eCCCCCchhhHHHHHHHHHhcCCCcEEEECCcCCHHHHHHHH
Confidence 455665458999999999988779999999999998876653
No 72
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=26.57 E-value=1.3e+02 Score=23.71 Aligned_cols=31 Identities=16% Similarity=0.127 Sum_probs=23.7
Q ss_pred HHHhhcCcceEEeeeeecCCCCHHHHHHHHH
Q psy97 58 TMRRLHHKVNIVPLIAKADTLTSAEVKKLKK 88 (339)
Q Consensus 58 ~mk~L~~~vNvIPVIaKaD~lt~~E~~~~K~ 88 (339)
.+........+|-|+.|+|..+..+......
T Consensus 97 ~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~ 127 (163)
T cd00880 97 LELLRERGKPVLLVLNKIDLLPEEEEEELLE 127 (163)
T ss_pred HHHHHhcCCeEEEEEEccccCChhhHHHHHH
Confidence 4455567888999999999998877766543
No 73
>KOG1490|consensus
Probab=26.03 E-value=59 Score=34.55 Aligned_cols=49 Identities=14% Similarity=0.330 Sum_probs=38.0
Q ss_pred HHHhhcCcceEEeeeeecCCCCHHHHHHHHHHHHHHHHhcc-cccccCCC
Q psy97 58 TMRRLHHKVNIVPLIAKADTLTSAEVKKLKKKLLEDIEENQ-IQIYQFPE 106 (339)
Q Consensus 58 ~mk~L~~~vNvIPVIaKaD~lt~~E~~~~K~~I~~~l~~~~-I~if~fp~ 106 (339)
.||.|=.---+|-|++|.|.+.++.+-+=++.+.+++++-+ ++++.-..
T Consensus 274 sIKpLFaNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~v~v~~tS~ 323 (620)
T KOG1490|consen 274 SIKPLFANKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGNVKVVQTSC 323 (620)
T ss_pred HhHHHhcCCceEEEeecccccCccccCHHHHHHHHHHHhccCceEEEecc
Confidence 45555433336669999999999999999988998888777 88886653
No 74
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=25.73 E-value=52 Score=32.06 Aligned_cols=35 Identities=17% Similarity=0.472 Sum_probs=25.7
Q ss_pred cccHHHHHhhcCcceEEeeeeecCCCCHHHHHHHHH
Q psy97 53 QIDIETMRRLHHKVNIVPLIAKADTLTSAEVKKLKK 88 (339)
Q Consensus 53 ~~Di~~mk~L~~~vNvIPVIaKaD~lt~~E~~~~K~ 88 (339)
+.|.++++++.+.++ ||||+-.|..|.++...+.+
T Consensus 169 ~a~w~~i~~i~~~~~-ipvi~NGdI~s~~d~~~~~~ 203 (309)
T PF01207_consen 169 PADWEAIAEIKEALP-IPVIANGDIFSPEDAERMLE 203 (309)
T ss_dssp ---HHHHHHCHHC-T-SEEEEESS--SHHHHHHHCC
T ss_pred ccchHHHHHHhhccc-ceeEEcCccCCHHHHHHHHH
Confidence 999999999999999 89999999999988866443
No 75
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=25.26 E-value=1.7e+02 Score=25.59 Aligned_cols=30 Identities=13% Similarity=0.274 Sum_probs=22.0
Q ss_pred cceEEeeeeecCCCCHHHHHHHHHHHHHHH
Q psy97 65 KVNIVPLIAKADTLTSAEVKKLKKKLLEDI 94 (339)
Q Consensus 65 ~vNvIPVIaKaD~lt~~E~~~~K~~I~~~l 94 (339)
..++|-|+.|.|..+.++.......+.+.+
T Consensus 120 ~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l 149 (192)
T cd01889 120 CKKLIVVLNKIDLIPEEERERKIEKMKKKL 149 (192)
T ss_pred CCCEEEEEECcccCCHHHHHHHHHHHHHHH
Confidence 458899999999998777665555555544
No 76
>PRK00093 GTP-binding protein Der; Reviewed
Probab=25.26 E-value=1.3e+02 Score=30.27 Aligned_cols=30 Identities=20% Similarity=0.272 Sum_probs=20.2
Q ss_pred ecCcccHHHHHhhcC-cceEEeeeeecCCCC
Q psy97 50 SLRQIDIETMRRLHH-KVNIVPLIAKADTLT 79 (339)
Q Consensus 50 ~L~~~Di~~mk~L~~-~vNvIPVIaKaD~lt 79 (339)
++.+.|.++.+.|.. ...+|-|+.|+|...
T Consensus 93 ~~~~~~~~~~~~l~~~~~piilv~NK~D~~~ 123 (435)
T PRK00093 93 GLTPADEEIAKILRKSNKPVILVVNKVDGPD 123 (435)
T ss_pred CCCHHHHHHHHHHHHcCCcEEEEEECccCcc
Confidence 566666655444432 568899999999654
No 77
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=25.06 E-value=55 Score=26.63 Aligned_cols=41 Identities=20% Similarity=0.403 Sum_probs=28.2
Q ss_pred eeEEEEEc-----ccccchHHHHHHhccccceeeeeecCCCCCHHHH
Q psy97 143 KVLIIFYF-----SLRQIDIETMRRLHHKVNIVPLIAKADTLTSAEV 184 (339)
Q Consensus 143 rvh~~lYf-----gl~~lDi~~mk~L~~~vNvIPVIaKaD~LT~~El 184 (339)
+.|+.+|+ .....+..++.. ....+++.|++|+|..+..+.
T Consensus 80 ~~~~~v~v~d~~~~~~~~~~~~~~~-~~~~~vi~v~nK~D~~~~~~~ 125 (157)
T cd04164 80 EADLVLFVIDASRGLDEEDLEILEL-PADKPIIVVLNKSDLLPDSEL 125 (157)
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHh-hcCCCEEEEEEchhcCCcccc
Confidence 45666666 344556655555 456799999999999876654
No 78
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=25.01 E-value=1.7e+02 Score=23.13 Aligned_cols=30 Identities=17% Similarity=0.118 Sum_probs=22.8
Q ss_pred HHHHhccccceeeeeecCCCCCHHHHHHHH
Q psy97 159 TMRRLHHKVNIVPLIAKADTLTSAEVKKLK 188 (339)
Q Consensus 159 ~mk~L~~~vNvIPVIaKaD~LT~~El~~~K 188 (339)
++.......+++-|++|+|.....+.....
T Consensus 97 ~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~ 126 (163)
T cd00880 97 LELLRERGKPVLLVLNKIDLLPEEEEEELL 126 (163)
T ss_pred HHHHHhcCCeEEEEEEccccCChhhHHHHH
Confidence 445455778899999999999988776543
No 79
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=24.29 E-value=1.8e+02 Score=26.23 Aligned_cols=50 Identities=18% Similarity=0.175 Sum_probs=31.9
Q ss_pred ecCcccHHHHHhhcCc-c-eEEeeeeecCCCCHHHHHH-HHHHHHHHHHhccc
Q psy97 50 SLRQIDIETMRRLHHK-V-NIVPLIAKADTLTSAEVKK-LKKKLLEDIEENQI 99 (339)
Q Consensus 50 ~L~~~Di~~mk~L~~~-v-NvIPVIaKaD~lt~~E~~~-~K~~I~~~l~~~~I 99 (339)
|..+-+-+.++.+... + .+|-+|.|.|....++..+ .++.|.+.|...+.
T Consensus 101 g~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~ 153 (195)
T cd01884 101 GPMPQTREHLLLARQVGVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGF 153 (195)
T ss_pred CCcHHHHHHHHHHHHcCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhcc
Confidence 5666666666665532 3 3677889999876565433 66677777766543
No 80
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=24.21 E-value=1e+02 Score=30.92 Aligned_cols=33 Identities=24% Similarity=0.328 Sum_probs=26.5
Q ss_pred ceeeeeecCCCCCHHHHHHH-HHHHHHHHHHcCC
Q psy97 168 NIVPLIAKADTLTSAEVKKL-KKKLLEDIEENQI 200 (339)
Q Consensus 168 NvIPVIaKaD~LT~~El~~~-K~~I~~~l~~~~I 200 (339)
-++++++|+|+.+++|+..+ -.-+++.|..++.
T Consensus 130 ~ivvflnK~Dmvdd~ellelVemEvreLLs~y~f 163 (394)
T COG0050 130 YIVVFLNKVDMVDDEELLELVEMEVRELLSEYGF 163 (394)
T ss_pred EEEEEEecccccCcHHHHHHHHHHHHHHHHHcCC
Confidence 67999999999998888776 5667777776653
No 81
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=24.19 E-value=4.9e+02 Score=23.46 Aligned_cols=128 Identities=16% Similarity=0.252 Sum_probs=0.0
Q ss_pred CcccHHHHHhhcCcceEEeeeeecCCCCHHHHHHHHHHHHHHHHhcccccccCCCCCCCcchHHHHhhhhhhc-ccchhh
Q psy97 52 RQIDIETMRRLHHKVNIVPLIAKADTLTSAEVKKLKKKLLEDIEENQIQIYQFPECDSDEDEDFKQQDKELKE-SVPFAI 130 (339)
Q Consensus 52 ~~~Di~~mk~L~~~vNvIPVIaKaD~lt~~E~~~~K~~I~~~l~~~~I~if~fp~~~~~~d~~~~~~~~~ik~-~lPFAV 130 (339)
.+.+..+++++.+.++ +||++.+..-|.+..+.+-. .|.+.--.+..-..+.+-..+....+.. .+.+++
T Consensus 58 ~~~~~~~i~~i~~~~~-~pv~~~GgI~~~e~~~~~~~--------~Gad~vvigs~~l~dp~~~~~i~~~~g~~~i~~si 128 (234)
T cd04732 58 EPVNLELIEEIVKAVG-IPVQVGGGIRSLEDIERLLD--------LGVSRVIIGTAAVKNPELVKELLKEYGGERIVVGL 128 (234)
T ss_pred CCCCHHHHHHHHHhcC-CCEEEeCCcCCHHHHHHHHH--------cCCCEEEECchHHhChHHHHHHHHHcCCceEEEEE
Q ss_pred hccceeeeeecce------------------eEEEEEc------ccccchHHHHHHhccccceeeeeecCCCCCHHHHHH
Q psy97 131 IGSNTVIEVAGTK------------------VLIIFYF------SLRQIDIETMRRLHHKVNIVPLIAKADTLTSAEVKK 186 (339)
Q Consensus 131 Vgsnrr~~~~D~r------------------vh~~lYf------gl~~lDi~~mk~L~~~vNvIPVIaKaD~LT~~El~~ 186 (339)
-.-.......+.. ....++. ..+..|.+.++++.+.++ +|||+=.+.-|.+.+..
T Consensus 129 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ga~~iii~~~~~~g~~~g~~~~~i~~i~~~~~-ipvi~~GGi~~~~di~~ 207 (234)
T cd04732 129 DAKDGKVATKGWLETSEVSLEELAKRFEELGVKAIIYTDISRDGTLSGPNFELYKELAAATG-IPVIASGGVSSLDDIKA 207 (234)
T ss_pred EeeCCEEEECCCeeecCCCHHHHHHHHHHcCCCEEEEEeecCCCccCCCCHHHHHHHHHhcC-CCEEEecCCCCHHHHHH
Q ss_pred HHH
Q psy97 187 LKK 189 (339)
Q Consensus 187 ~K~ 189 (339)
+.+
T Consensus 208 ~~~ 210 (234)
T cd04732 208 LKE 210 (234)
T ss_pred HHH
No 82
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=24.09 E-value=2.2e+02 Score=24.81 Aligned_cols=30 Identities=13% Similarity=0.274 Sum_probs=22.1
Q ss_pred ccceeeeeecCCCCCHHHHHHHHHHHHHHH
Q psy97 166 KVNIVPLIAKADTLTSAEVKKLKKKLLEDI 195 (339)
Q Consensus 166 ~vNvIPVIaKaD~LT~~El~~~K~~I~~~l 195 (339)
..+++-|++|.|..+.++.....+.+.+.+
T Consensus 120 ~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l 149 (192)
T cd01889 120 CKKLIVVLNKIDLIPEEERERKIEKMKKKL 149 (192)
T ss_pred CCCEEEEEECcccCCHHHHHHHHHHHHHHH
Confidence 458889999999998877665555555544
No 83
>PRK09866 hypothetical protein; Provisional
Probab=23.71 E-value=1.1e+02 Score=33.57 Aligned_cols=50 Identities=14% Similarity=0.102 Sum_probs=32.9
Q ss_pred ecCcccHHHHHhhcCc---ceEEeeeeecCCCCHHH--HHHHHHHHHHHHHhccc
Q psy97 50 SLRQIDIETMRRLHHK---VNIVPLIAKADTLTSAE--VKKLKKKLLEDIEENQI 99 (339)
Q Consensus 50 ~L~~~Di~~mk~L~~~---vNvIPVIaKaD~lt~~E--~~~~K~~I~~~l~~~~I 99 (339)
+..+.|-.+++.|... +++|-||.|.|....++ ...++..+...+.+-++
T Consensus 271 ~~s~~DeeIlk~Lkk~~K~~PVILVVNKIDl~dreeddkE~Lle~V~~~L~q~~i 325 (741)
T PRK09866 271 LKSISDEEVREAILAVGQSVPLYVLVNKFDQQDRNSDDADQVRALISGTLMKGCI 325 (741)
T ss_pred CCChhHHHHHHHHHhcCCCCCEEEEEEcccCCCcccchHHHHHHHHHHHHHhcCC
Confidence 4677888888877643 48999999999875332 44455555555544333
No 84
>CHL00071 tufA elongation factor Tu
Probab=23.68 E-value=2.1e+02 Score=28.87 Aligned_cols=49 Identities=16% Similarity=0.153 Sum_probs=33.7
Q ss_pred ccccchHHHHHHhc-cccc-eeeeeecCCCCCHHHH-HHHHHHHHHHHHHcC
Q psy97 151 SLRQIDIETMRRLH-HKVN-IVPLIAKADTLTSAEV-KKLKKKLLEDIEENQ 199 (339)
Q Consensus 151 gl~~lDi~~mk~L~-~~vN-vIPVIaKaD~LT~~El-~~~K~~I~~~l~~~~ 199 (339)
|+.+.+.+.+..+. ..++ +|-+|+|.|..+.+++ +.+++.+.+.|...+
T Consensus 111 g~~~qt~~~~~~~~~~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~ 162 (409)
T CHL00071 111 GPMPQTKEHILLAKQVGVPNIVVFLNKEDQVDDEELLELVELEVRELLSKYD 162 (409)
T ss_pred CCcHHHHHHHHHHHHcCCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHhC
Confidence 56666666555443 2344 7788999999987764 456778888887755
No 85
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=23.48 E-value=2.2e+02 Score=24.08 Aligned_cols=22 Identities=18% Similarity=0.354 Sum_probs=17.4
Q ss_pred CcceEEeeeeecCCCCHHHHHH
Q psy97 64 HKVNIVPLIAKADTLTSAEVKK 85 (339)
Q Consensus 64 ~~vNvIPVIaKaD~lt~~E~~~ 85 (339)
....+|.|+.|+|.++.+++..
T Consensus 28 ~~~p~IiVlNK~Dl~~~~~~~~ 49 (155)
T cd01849 28 KGKKLILVLNKADLVPKEVLRK 49 (155)
T ss_pred CCCCEEEEEechhcCCHHHHHH
Confidence 4578999999999988766543
No 86
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=23.14 E-value=2e+02 Score=25.49 Aligned_cols=40 Identities=20% Similarity=0.122 Sum_probs=25.1
Q ss_pred cCcccHHHHHh--h-cCcceEEeeeeecCCCCHHHHHHHHHHH
Q psy97 51 LRQIDIETMRR--L-HHKVNIVPLIAKADTLTSAEVKKLKKKL 90 (339)
Q Consensus 51 L~~~Di~~mk~--L-~~~vNvIPVIaKaD~lt~~E~~~~K~~I 90 (339)
+...+-.+.+. + .....+|-|+.|+|+..++++......+
T Consensus 13 ~~~~~~~i~~~~~l~~~~kp~IlVlNK~DL~~~~~l~~~~~~~ 55 (172)
T cd04178 13 LGCRCPQVEEAVLQAGGNKKLVLVLNKIDLVPKENVEKWLKYL 55 (172)
T ss_pred CCCCCHHHHHHHHhccCCCCEEEEEehhhcCCHHHHHHHHHHH
Confidence 33444444444 2 2345788899999999888765555544
No 87
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=23.01 E-value=1.5e+02 Score=25.84 Aligned_cols=44 Identities=16% Similarity=0.355 Sum_probs=31.4
Q ss_pred ecCcccHHHHHhhc-CcceEEeeeeecCCCCHHHHHHHHHHHHHHH
Q psy97 50 SLRQIDIETMRRLH-HKVNIVPLIAKADTLTSAEVKKLKKKLLEDI 94 (339)
Q Consensus 50 ~L~~~Di~~mk~L~-~~vNvIPVIaKaD~lt~~E~~~~K~~I~~~l 94 (339)
|+.+.+.+.++.+. ..+.+|-||.|.|.+ ..+..+..+.+.+.+
T Consensus 106 g~~~~~~~~l~~~~~~~~p~ivvlNK~D~~-~~~~~~~~~~~~~~l 150 (188)
T PF00009_consen 106 GIQPQTEEHLKILRELGIPIIVVLNKMDLI-EKELEEIIEEIKEKL 150 (188)
T ss_dssp BSTHHHHHHHHHHHHTT-SEEEEEETCTSS-HHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccceEEeeeeccch-hhhHHHHHHHHHHHh
Confidence 67777777776663 456699999999998 666766666666554
No 88
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=22.68 E-value=1.2e+02 Score=26.12 Aligned_cols=33 Identities=12% Similarity=0.189 Sum_probs=24.7
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHcCCcccCCCCC
Q psy97 176 ADTLTSAEVKKLKKKLLEDIEENQIQIYQFPEC 208 (339)
Q Consensus 176 aD~LT~~El~~~K~~I~~~l~~~~I~if~f~~~ 208 (339)
--.|+.+..+.+-+.|+..++.+|.++.+|.+.
T Consensus 66 ytG~~~~~r~~~y~kI~~~~~~~gf~v~D~s~~ 98 (130)
T PF04914_consen 66 YTGLSKEMRQEYYKKIKYQLKSQGFNVADFSDD 98 (130)
T ss_dssp HTT--HHHHHHHHHHHHHHHHTTT--EEE-TTG
T ss_pred HhCCCHHHHHHHHHHHHHHHHHCCCEEEecccC
Confidence 346899999999999999999999999999754
No 89
>PRK14457 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=22.50 E-value=1.1e+02 Score=30.51 Aligned_cols=60 Identities=10% Similarity=0.273 Sum_probs=41.5
Q ss_pred CceEEEEEEEeecCc--cc----HHHHHhhcCcceEEeeee----ecCCCCHHHHHHHHHHHHHHHHhcccccc
Q psy97 39 NQIQVLIIFYFSLRQ--ID----IETMRRLHHKVNIVPLIA----KADTLTSAEVKKLKKKLLEDIEENQIQIY 102 (339)
Q Consensus 39 ~rvhv~~~lYf~L~~--~D----i~~mk~L~~~vNvIPVIa----KaD~lt~~E~~~~K~~I~~~l~~~~I~if 102 (339)
.+|.+-..|.-|+.. -| .++++.+..+||+||.-. |-...+.+++.+|++ .|+.+||.+.
T Consensus 254 r~I~iey~LIpGvNDs~e~a~~La~~l~~l~~~VnLIPynp~~~~~~~~ps~e~i~~f~~----~L~~~Gi~vt 323 (345)
T PRK14457 254 RRVSFEYILLGGVNDLPEHAEELANLLRGFQSHVNLIPYNPIDEVEFQRPSPKRIQAFQR----VLEQRGVAVS 323 (345)
T ss_pred CEEEEEEEEECCcCCCHHHHHHHHHHHhcCCCeEEEecCCCCCCCCCCCCCHHHHHHHHH----HHHHCCCeEE
Confidence 467777555546653 33 345667777899999953 555678888877765 5677898875
No 90
>KOG0626|consensus
Probab=22.32 E-value=3.2e+02 Score=29.12 Aligned_cols=127 Identities=26% Similarity=0.408 Sum_probs=75.0
Q ss_pred ceeEEEEEcccccchHHHHHHhcccc--------ceeeeeecCCCCCHHHHHHHHHHHHHHHHHcCCccc------CCCC
Q psy97 142 TKVLIIFYFSLRQIDIETMRRLHHKV--------NIVPLIAKADTLTSAEVKKLKKKLLEDIEENQIQIY------QFPE 207 (339)
Q Consensus 142 ~rvh~~lYfgl~~lDi~~mk~L~~~v--------NvIPVIaKaD~LT~~El~~~K~~I~~~l~~~~I~if------~f~~ 207 (339)
+.+-|..|- .=.-||+.|++|.--. =|+|.=.+.....++=++- ...+.++|..+||..| +.|.
T Consensus 83 gdva~D~Yh-~ykeDv~Lmk~lgv~afRFSIsWSRIlP~G~~~~gVN~~Gi~f-Y~~LI~eL~~nGI~P~VTLfHwDlPq 160 (524)
T KOG0626|consen 83 GDVAVDFYH-RYKEDVKLMKELGVDAFRFSISWSRILPNGRLTGGVNEAGIQF-YNNLIDELLANGIEPFVTLFHWDLPQ 160 (524)
T ss_pred CCeechhhh-hhHHHHHHHHHcCCCeEEEEeehHhhCCCCCcCCCcCHHHHHH-HHHHHHHHHHcCCeEEEEEecCCCCH
Confidence 346666665 3345899999996322 2455433355677776655 5556667778999975 2232
Q ss_pred CCCCc---------CHHhHHHh----Hh----------hhcCCCeEEEecCceEeeCCeeeeeccCCc-eeeeecCCCCC
Q psy97 208 CDSDE---------DEDFKQQD----KE----------LKESVPFAIIGSNTVIEVAGTKVRGRQYPW-GVVEVENPKHS 263 (339)
Q Consensus 208 ~~~~~---------de~~~~~~----~~----------l~~~~PFaVI~s~~~~~~~g~~~~~R~y~W-G~veven~~h~ 263 (339)
.-.|+ -+++.+.+ ++ +++.--||+.|- ..|..-+||.=+| |.|...|+..-
T Consensus 161 ~LeDeYgGwLn~~ivedF~~yA~~CF~~fGDrVK~WiT~NEP~v~s~~gY-----~~G~~aPGrCs~~~~~c~~g~s~~e 235 (524)
T KOG0626|consen 161 ALEDEYGGWLNPEIVEDFRDYADLCFQEFGDRVKHWITFNEPNVFSIGGY-----DTGTKAPGRCSKYVGNCSAGNSGTE 235 (524)
T ss_pred HHHHHhccccCHHHHHHHHHHHHHHHHHhcccceeeEEecccceeeeehh-----ccCCCCCCCCCcccccCCCCCCCCC
Confidence 11110 02233322 12 234333555443 2377888998888 55666777777
Q ss_pred chHHHHHhhhhhh
Q psy97 264 DFNKLRNMLISTH 276 (339)
Q Consensus 264 DF~~Lr~~Li~~h 276 (339)
=+....++|+ .|
T Consensus 236 pYiv~HNllL-AH 247 (524)
T KOG0626|consen 236 PYIVAHNLLL-AH 247 (524)
T ss_pred cchHHHHHHH-HH
Confidence 7888899988 46
No 91
>KOG1424|consensus
Probab=21.60 E-value=1.1e+02 Score=32.63 Aligned_cols=66 Identities=23% Similarity=0.361 Sum_probs=43.4
Q ss_pred ccceeeeeecceeEEEEEcccccchHH-HHHHhccccceeeeeecCCCCCHHHHHHHHHHHHHHHHHcCCcccCC
Q psy97 132 GSNTVIEVAGTKVLIIFYFSLRQIDIE-TMRRLHHKVNIVPLIAKADTLTSAEVKKLKKKLLEDIEENQIQIYQF 205 (339)
Q Consensus 132 gsnrr~~~~D~rvh~~lYfgl~~lDi~-~mk~L~~~vNvIPVIaKaD~LT~~El~~~K~~I~~~l~~~~I~if~f 205 (339)
.|+-.+.++|-|.-. || ++-|++ +.++....--.+-+++|||+||++...+- ++.+.+++|++.-|
T Consensus 174 rSDivvqIVDARnPl-lf---r~~dLe~Yvke~d~~K~~~LLvNKaDLl~~~qr~aW----a~YF~~~ni~~vf~ 240 (562)
T KOG1424|consen 174 RSDIVVQIVDARNPL-LF---RSPDLEDYVKEVDPSKANVLLVNKADLLPPEQRVAW----AEYFRQNNIPVVFF 240 (562)
T ss_pred hcceEEEEeecCCcc-cc---CChhHHHHHhccccccceEEEEehhhcCCHHHHHHH----HHHHHhcCceEEEE
Confidence 445455777776443 22 456774 67777663344457999999999877664 34566778888755
No 92
>PLN02734 glycyl-tRNA synthetase
Probab=21.41 E-value=1.3e+02 Score=33.00 Aligned_cols=52 Identities=17% Similarity=0.292 Sum_probs=35.5
Q ss_pred hhhcCCCeEEEecCceE----eeCCeeeeeccCCceeee----ecCCCCCchHHHHHhhh
Q psy97 222 ELKESVPFAIIGSNTVI----EVAGTKVRGRQYPWGVVE----VENPKHSDFNKLRNMLI 273 (339)
Q Consensus 222 ~l~~~~PFaVI~s~~~~----~~~g~~~~~R~y~WG~ve----ven~~h~DF~~Lr~~Li 273 (339)
..+..+|||+..-.... ...+-..|.|.|.-.-+| .++..|..|....++-+
T Consensus 269 ~~~~klPF~~AQIGk~FRNEIsPR~gl~R~REF~qaEiE~Fv~P~~k~h~~f~~v~~~~l 328 (684)
T PLN02734 269 YNGGKLPFAAAQIGQAFRNEISPRQGLLRVREFTLAEIEHFVDPEDKSHPKFSEVADLEF 328 (684)
T ss_pred hcCCCCCeeeeeccHhhhcccCcccceeeechhhhhhhheecCcccccccchhhhhhhhh
Confidence 34678999996433322 222347899999887655 44778888988777755
No 93
>PRK00093 GTP-binding protein Der; Reviewed
Probab=21.36 E-value=1.6e+02 Score=29.44 Aligned_cols=55 Identities=15% Similarity=0.215 Sum_probs=39.2
Q ss_pred eEEEEEEEe---ecCcccHHHHHhhc-CcceEEeeeeecCCCCHHHHHHHHHHHHHHHH
Q psy97 41 IQVLIIFYF---SLRQIDIETMRRLH-HKVNIVPLIAKADTLTSAEVKKLKKKLLEDIE 95 (339)
Q Consensus 41 vhv~~~lYf---~L~~~Di~~mk~L~-~~vNvIPVIaKaD~lt~~E~~~~K~~I~~~l~ 95 (339)
.+++++++= ++...|...++.+. ....+|-|+.|.|.+..++..++++.+...+.
T Consensus 256 ad~~ilViD~~~~~~~~~~~i~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~ 314 (435)
T PRK00093 256 ADVVLLVIDATEGITEQDLRIAGLALEAGRALVIVVNKWDLVDEKTMEEFKKELRRRLP 314 (435)
T ss_pred CCEEEEEEeCCCCCCHHHHHHHHHHHHcCCcEEEEEECccCCCHHHHHHHHHHHHHhcc
Confidence 356544443 67777887776665 35778889999999977777777777776554
No 94
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=20.58 E-value=1.2e+02 Score=28.19 Aligned_cols=37 Identities=16% Similarity=0.403 Sum_probs=31.7
Q ss_pred ecCcccHHHHHhhcCcceEEeeeeecCCCCHHHHHHHH
Q psy97 50 SLRQIDIETMRRLHHKVNIVPLIAKADTLTSAEVKKLK 87 (339)
Q Consensus 50 ~L~~~Di~~mk~L~~~vNvIPVIaKaD~lt~~E~~~~K 87 (339)
..+..|++.++++.+.++ +|||+-.+.-|.+++..++
T Consensus 173 ~~~G~d~~~i~~i~~~~~-ipviasGGi~s~~D~~~l~ 209 (241)
T PRK14024 173 TLTGPNLELLREVCARTD-APVVASGGVSSLDDLRALA 209 (241)
T ss_pred CccCCCHHHHHHHHhhCC-CCEEEeCCCCCHHHHHHHh
Confidence 455669999999999887 7999999999999987664
No 95
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=20.24 E-value=84 Score=30.14 Aligned_cols=29 Identities=28% Similarity=0.449 Sum_probs=22.8
Q ss_pred chHHHHHHhccccceeeeeecCCCCCHHHH
Q psy97 155 IDIETMRRLHHKVNIVPLIAKADTLTSAEV 184 (339)
Q Consensus 155 lDi~~mk~L~~~vNvIPVIaKaD~LT~~El 184 (339)
.|++.++.++..|| |||||=.=.=+++..
T Consensus 186 yDl~l~~~v~~~v~-iPvIASGGaG~~ehf 214 (256)
T COG0107 186 YDLELTRAVREAVN-IPVIASGGAGKPEHF 214 (256)
T ss_pred cCHHHHHHHHHhCC-CCEEecCCCCcHHHH
Confidence 68999999999988 799976665555544
Done!