RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy97
(339 letters)
>gnl|CDD|206649 cd01850, CDC_Septin, CDC/Septin GTPase family. Septins are a
conserved family of GTP-binding proteins associated with
diverse processes in dividing and non-dividing cells.
They were first discovered in the budding yeast S.
cerevisiae as a set of genes (CDC3, CDC10, CDC11 and
CDC12) required for normal bud morphology. Septins are
also present in metazoan cells, where they are required
for cytokinesis in some systems, and implicated in a
variety of other processes involving organization of the
cell cortex and exocytosis. In humans, 12 septin genes
generate dozens of polypeptides, many of which comprise
heterooligomeric complexes. Since septin mutants are
commonly defective in cytokinesis and formation of the
neck formation of the neck filaments/septin rings,
septins have been considered to be the primary
constituents of the neck filaments. Septins belong to
the GTPase superfamily for their conserved GTPase motifs
and enzymatic activities.
Length = 275
Score = 240 bits (616), Expect = 2e-78
Identities = 92/166 (55%), Positives = 125/166 (75%), Gaps = 8/166 (4%)
Query: 142 TKVLIIFYF------SLRQIDIETMRRLHHKVNIVPLIAKADTLTSAEVKKLKKKLLEDI 195
T+V YF L+ +DIE M++L KVNI+P+IAKADTLT E+ + KK+++EDI
Sbjct: 112 TRVHCCLYFIPPTGHGLKPLDIEFMKKLSKKVNIIPVIAKADTLTPEELTEFKKRIMEDI 171
Query: 196 EENQIQIYQFPECDSDEDEDFKQQDKELKESVPFAIIGSNTVIEVAGTKVRGRQYPWGVV 255
EEN I+IY+FPE + EDE+ +++K+LK +PFAI+GSN +EV G KVRGR+YPWGVV
Sbjct: 172 EENNIKIYKFPEDE--EDEEEIEENKKLKSLIPFAIVGSNEEVEVNGKKVRGRKYPWGVV 229
Query: 256 EVENPKHSDFNKLRNMLISTHMQDLKDVTEDVHYENFRAQCLSQIS 301
EVEN +H DF KLRN+LI TH+QDLK+ T +VHYEN+R++ L +
Sbjct: 230 EVENEEHCDFVKLRNLLIRTHLQDLKETTHNVHYENYRSEKLEALK 275
Score = 132 bits (335), Expect = 1e-36
Identities = 58/123 (47%), Positives = 82/123 (66%), Gaps = 17/123 (13%)
Query: 37 EENQIQ---------VLIIFYF------SLRQIDIETMRRLHHKVNIVPLIAKADTLTSA 81
EE++I V YF L+ +DIE M++L KVNI+P+IAKADTLT
Sbjct: 99 EESRINRNRRIPDTRVHCCLYFIPPTGHGLKPLDIEFMKKLSKKVNIIPVIAKADTLTPE 158
Query: 82 EVKKLKKKLLEDIEENQIQIYQFPECDSDEDEDFKQQDKELKESVPFAIIGSNTVIEVAG 141
E+ + KK+++EDIEEN I+IY+FPE +EDE+ +++K+LK +PFAI+GSN +EV G
Sbjct: 159 ELTEFKKRIMEDIEENNIKIYKFPED--EEDEEEIEENKKLKSLIPFAIVGSNEEVEVNG 216
Query: 142 TKV 144
KV
Sbjct: 217 KKV 219
Score = 66.0 bits (162), Expect = 2e-12
Identities = 25/43 (58%), Positives = 36/43 (83%)
Query: 1 MRRLHHKVNIVPLIAKADTLTSAEVKKLKKKLLEDIEENQIQV 43
M++L KVNI+P+IAKADTLT E+ + KK+++EDIEEN I++
Sbjct: 136 MKKLSKKVNIIPVIAKADTLTPEELTEFKKRIMEDIEENNIKI 178
>gnl|CDD|201420 pfam00735, Septin, Septin. Members of this family include CDC3,
CDC10, CDC11 and CDC12/Septin. Members of this family
bind GTP. As regards the septins, these are polypeptides
of 30-65kDa with three characteristic GTPase motifs
(G-1, G-3 and G-4) that are similar to those of the Ras
family. The G-4 motif is strictly conserved with a
unique septin consensus of AKAD. Most septins are
thought to have at least one coiled-coil region, which
in some cases is necessary for intermolecular
interactions that allow septins to polymerise to form
rod-shaped complexes. In turn, these are arranged into
tandem arrays to form filaments. They are
multifunctional proteins, with roles in cytokinesis,
sporulation, germ cell development, exocytosis and
apoptosis.
Length = 280
Score = 236 bits (603), Expect = 2e-76
Identities = 94/163 (57%), Positives = 125/163 (76%), Gaps = 7/163 (4%)
Query: 142 TKVLIIFYF------SLRQIDIETMRRLHHKVNIVPLIAKADTLTSAEVKKLKKKLLEDI 195
+V YF L+ +D+E M++LH KVNI+P+IAKADTLT E+++ KK++ +I
Sbjct: 111 NRVHCCLYFISPTGHGLKPLDVEFMKKLHEKVNIIPVIAKADTLTPDELQRFKKRIRAEI 170
Query: 196 EENQIQIYQFPECDSDEDEDFKQQDKELKESVPFAIIGSNTVIEVAGTKVRGRQYPWGVV 255
E I+IY FP+ +SDEDE+ K+Q ++LK S+PFAI+GSNT IE G KVRGR+YPWGVV
Sbjct: 171 ERQNIKIYHFPDEESDEDEE-KEQTEQLKSSIPFAIVGSNTEIENDGKKVRGRKYPWGVV 229
Query: 256 EVENPKHSDFNKLRNMLISTHMQDLKDVTEDVHYENFRAQCLS 298
EVENP H DF KLRNMLI TH+QDLK+VT ++HYEN+R++ LS
Sbjct: 230 EVENPSHCDFLKLRNMLIRTHLQDLKEVTHELHYENYRSEKLS 272
Score = 132 bits (335), Expect = 2e-36
Identities = 54/105 (51%), Positives = 76/105 (72%), Gaps = 7/105 (6%)
Query: 46 IFYF------SLRQIDIETMRRLHHKVNIVPLIAKADTLTSAEVKKLKKKLLEDIEENQI 99
YF L+ +D+E M++LH KVNI+P+IAKADTLT E+++ KK++ +IE I
Sbjct: 116 CLYFISPTGHGLKPLDVEFMKKLHEKVNIIPVIAKADTLTPDELQRFKKRIRAEIERQNI 175
Query: 100 QIYQFPECDSDEDEDFKQQDKELKESVPFAIIGSNTVIEVAGTKV 144
+IY FP+ +SDEDE+ K+Q ++LK S+PFAI+GSNT IE G KV
Sbjct: 176 KIYHFPDEESDEDEE-KEQTEQLKSSIPFAIVGSNTEIENDGKKV 219
>gnl|CDD|227352 COG5019, CDC3, Septin family protein [Cell division and chromosome
partitioning / Cytoskeleton].
Length = 373
Score = 179 bits (456), Expect = 2e-53
Identities = 84/197 (42%), Positives = 131/197 (66%), Gaps = 10/197 (5%)
Query: 142 TKVLIIFYF------SLRQIDIETMRRLHHKVNIVPLIAKADTLTSAEVKKLKKKLLEDI 195
T+V YF L+ +DIE M+RL +VN++P+IAKADTLT E+ + K+++ ED+
Sbjct: 132 TRVHACLYFIRPTGHGLKPLDIEAMKRLSKRVNLIPVIAKADTLTDDELAEFKERIREDL 191
Query: 196 EENQIQIYQFPECDSDEDEDFKQQDKELKESVPFAIIGSNTVIEVAGTKVRGRQYPWGVV 255
E+ I ++ + + DEDE +++++L+ +PFAIIGSNT IE G +VRGR+YPWGVV
Sbjct: 192 EQYNIPVFDPYDPEDDEDESL-EENQDLRSLIPFAIIGSNTEIENGGEQVRGRKYPWGVV 250
Query: 256 EVENPKHSDFNKLRNMLISTHMQDLKDVTEDVHYENFRAQCLSQISQRGDRGKLKKDSAP 315
E+++ +HSDF KLRN+LI TH+Q+LK+ TE++ YEN+R ++S + G+
Sbjct: 251 EIDDEEHSDFKKLRNLLIRTHLQELKETTENLLYENYRT---EKLSGLKNSGEPSLKEIH 307
Query: 316 DGLITETDRLLLEKDEE 332
+ + E +R L +K E
Sbjct: 308 EARLNEEERELKKKFTE 324
Score = 92.0 bits (229), Expect = 7e-21
Identities = 43/113 (38%), Positives = 74/113 (65%), Gaps = 5/113 (4%)
Query: 36 IEENQIQVLIIFY----FSLRQIDIETMRRLHHKVNIVPLIAKADTLTSAEVKKLKKKLL 91
++ ++ + F L+ +DIE M+RL +VN++P+IAKADTLT E+ + K+++
Sbjct: 129 FKDTRVHACLYFIRPTGHGLKPLDIEAMKRLSKRVNLIPVIAKADTLTDDELAEFKERIR 188
Query: 92 EDIEENQIQIYQFPECDSDEDEDFKQQDKELKESVPFAIIGSNTVIEVAGTKV 144
ED+E+ I ++ + + DEDE +++++L+ +PFAIIGSNT IE G +V
Sbjct: 189 EDLEQYNIPVFDPYDPEDDEDESL-EENQDLRSLIPFAIIGSNTEIENGGEQV 240
>gnl|CDD|237103 PRK12447, PRK12447, histidinol dehydrogenase; Reviewed.
Length = 426
Score = 32.9 bits (76), Expect = 0.22
Identities = 27/104 (25%), Positives = 44/104 (42%), Gaps = 30/104 (28%)
Query: 179 LTSAE----VKKLKKKLLEDIEENQIQIYQFPECDSDEDEDFKQQDKELKESVPFAIIG- 233
L++AE V K+ +++ EDI Q Q+ +F E D +D + E++P I+G
Sbjct: 58 LSAAEIDAAVAKVPEQVKEDIRFAQDQVRRFAEAQRDSLQDLEV------ETLPGVILGH 111
Query: 234 SNTVIEVAGTKVRGRQYPWGVVEVENPKHSDFNKLRNMLISTHM 277
N + G V G +YP ++ S HM
Sbjct: 112 RNIPVNSVGCYVPGGRYP-------------------LVASAHM 136
Score = 28.3 bits (64), Expect = 6.6
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 11/69 (15%)
Query: 78 LTSAE----VKKLKKKLLEDIEENQIQIYQFPECDSDEDEDFKQQDKELKESVPFAIIG- 132
L++AE V K+ +++ EDI Q Q+ +F E D +D + E++P I+G
Sbjct: 58 LSAAEIDAAVAKVPEQVKEDIRFAQDQVRRFAEAQRDSLQDLEV------ETLPGVILGH 111
Query: 133 SNTVIEVAG 141
N + G
Sbjct: 112 RNIPVNSVG 120
>gnl|CDD|234468 TIGR04095, dnd_restrict_1, DNA phosphorothioation system
restriction enzyme. The DNA phosphorothioate
modification system dnd (DNA instability during
electrophoresis) recently has been shown to provide a
modification essential to a restriction system. This
protein family was detected by Partial Phylogenetic
Profiling as linked to dnd, and its members usually are
clustered with the dndABCDE genes.
Length = 451
Score = 32.7 bits (75), Expect = 0.27
Identities = 21/95 (22%), Positives = 41/95 (43%), Gaps = 11/95 (11%)
Query: 13 LIAKADTLTSAEVK--KLKKKLLEDIEENQIQVLIIFYFSLRQIDIETMRRLHHKVNIVP 70
LI +A + SA+ K L+ L + +E + +FY + + +V
Sbjct: 251 LIKRARLIGSAQNKLPALRDLLSKRLETSHT----LFYCGDGSTEDGSDEEDRQIDAVVR 306
Query: 71 LIA-----KADTLTSAEVKKLKKKLLEDIEENQIQ 100
L+ + +T T+ E K+ +++LL E +Q
Sbjct: 307 LLGNELGMRVNTFTAEESKEEREELLRQFESGLLQ 341
Score = 28.5 bits (64), Expect = 5.6
Identities = 9/30 (30%), Positives = 18/30 (60%)
Query: 16 KADTLTSAEVKKLKKKLLEDIEENQIQVLI 45
+ +T T+ E K+ +++LL E +Q L+
Sbjct: 315 RVNTFTAEESKEEREELLRQFESGLLQGLV 344
>gnl|CDD|132912 cd07041, STAS_RsbR_RsbS_like, Sulphate Transporter and Anti-Sigma
factor antagonist domain of the "stressosome" complex
proteins RsbS and RsbR, regulators of the bacterial
stress activated alternative sigma factor sigma-B by
phosphorylation. The STAS (Sulphate Transporter and
Anti-Sigma factor antagonist) domain of proteins
related to RsbS and RsbR which are part of the
"stressosome" complex that plays an important role in
the regulation of the bacterial stress activated
alternative sigma factor sigma-B. During stress
conditions RsbS and RsbR are phosphorylated which leads
to the release of RsbT, an activator of of the RsbU
phosphatase, which in turn activates RsbV which leads
to the release and activation of sigma factor B. RsbS
is a single domain protein (STAS domain), while
RsbR-like proteins have a well-conserved C-terminal
STATS domain and a variable N-terminal domain. The STAS
domain is also found in the C- terminal region of
sulphate transporters and anti-anti-sigma factors.
Length = 109
Score = 29.7 bits (68), Expect = 0.73
Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Query: 3 RLHHKVNIVPLIAKADTLTSAEVKKLKKKLLEDIEENQIQVLIIFYFSLRQIDIETMRRL 62
+ V ++PLI L ++L+++LLE I + + +II + ID R L
Sbjct: 6 PVWDGVLVLPLIG---DLDDERAEQLQERLLEAISRRRARGVIIDLTGVPVIDSAVARHL 62
>gnl|CDD|206665 cd01876, YihA_EngB, YihA (EngB) GTPase family. The YihA (EngB)
subfamily of GTPases is typified by the E. coli YihA, an
essential protein involved in cell division control.
YihA and its orthologs are small proteins that typically
contain less than 200 amino acid residues and consists
of the GTPase domain only (some of the eukaryotic
homologs contain an N-terminal extension of about 120
residues that might be involved in organellar
targeting). Homologs of yihA are found in most
Gram-positive and Gram-negative pathogenic bacteria,
with the exception of Mycobacterium tuberculosis. The
broad-spectrum nature of YihA and its essentiality for
cell viability in bacteria make it an attractive
antibacterial target.
Length = 170
Score = 29.0 bits (66), Expect = 2.3
Identities = 15/58 (25%), Positives = 30/58 (51%)
Query: 5 HHKVNIVPLIAKADTLTSAEVKKLKKKLLEDIEENQIQVLIIFYFSLRQIDIETMRRL 62
+ + ++ KAD L +E+ K+ KK+ E++ I +I + S + I+ +R L
Sbjct: 108 ELGIPFLIVLTKADKLKKSELAKVLKKIKEELNLFNILPPVILFSSKKGTGIDELRAL 165
>gnl|CDD|223406 COG0329, DapA, Dihydrodipicolinate synthase/N-acetylneuraminate
lyase [Amino acid transport and metabolism / Cell
envelope biogenesis, outer membrane].
Length = 299
Score = 28.7 bits (65), Expect = 3.9
Identities = 18/76 (23%), Positives = 33/76 (43%), Gaps = 5/76 (6%)
Query: 126 VPFAIIGSNTVIEVAG---TKVLIIFYFSLRQIDIETMRRLHHKVNIVPLIAKADTLTSA 182
+P ++G++ VI V ++ + Y + + DIE R L ++ PLI +
Sbjct: 196 LPALLLGADGVISVTANVAPELAVELYRAAKAGDIEEARELQDRLL--PLIRLLFREGNP 253
Query: 183 EVKKLKKKLLEDIEEN 198
K +LL I+
Sbjct: 254 IPIKAALRLLGLIDGG 269
>gnl|CDD|213835 TIGR03598, GTPase_YsxC, ribosome biogenesis GTP-binding protein
YsxC/EngB. Members of this protein family are a GTPase
associated with ribosome biogenesis, typified by YsxC
from Bacillus subutilis. The family is widely but not
universally distributed among bacteria. Members commonly
are called EngB based on homology to EngA, one of
several other GTPases of ribosome biogenesis. Cutoffs as
set find essentially all bacterial members, but also
identify large numbers of eukaryotic (probably
organellar) sequences. This protein is found in about 80
percent of bacterial genomes [Protein synthesis, Other].
Length = 178
Score = 27.8 bits (63), Expect = 5.7
Identities = 9/44 (20%), Positives = 24/44 (54%)
Query: 4 LHHKVNIVPLIAKADTLTSAEVKKLKKKLLEDIEENQIQVLIIF 47
+ ++ ++ KAD L +E+ K KK+ + ++++ + +F
Sbjct: 126 RERGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDADDSVQLF 169
>gnl|CDD|240591 cd12944, LEM_ANKL2, LEM (Lap2/Emerin/Man1) domain found in ankyrin
repeat and LEM domain-containing protein 2 (ANKL2). The
family includes ANKL2 and similar proteins. Although
their biological roles remain unclear, the family
members share an N-terminal LEM domain and an ankyrin
repeat region. The LEM domain, mainly found in inner
nuclear membrane proteins, may be involved in protein-
or DNA-binding. The ankyrin repeats are unique motifs
mediating protein-protein interactions.
Length = 43
Score = 25.5 bits (56), Expect = 6.7
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 297 LSQISQRGDRGKLKKDSAPDGLITETDRLLLEK 329
L ++S R +L+K G IT T R L EK
Sbjct: 2 LKKLSPDELREELRKAGLKCGPITSTTRFLFEK 34
>gnl|CDD|236794 PRK10917, PRK10917, ATP-dependent DNA helicase RecG; Provisional.
Length = 681
Score = 28.2 bits (64), Expect = 7.2
Identities = 7/26 (26%), Positives = 15/26 (57%)
Query: 20 LTSAEVKKLKKKLLEDIEENQIQVLI 45
LT + K ++++LE I + ++I
Sbjct: 344 LTGSLKGKERREILEAIASGEADIVI 369
>gnl|CDD|221115 pfam11456, DUF3019, Protein of unknown function (DUF3019). This is
a bacterial family of uncharacterized proteins.
Length = 102
Score = 26.5 bits (59), Expect = 9.0
Identities = 11/57 (19%), Positives = 22/57 (38%), Gaps = 6/57 (10%)
Query: 90 LLEDIEENQIQIYQFPECDSDEDEDFKQQDKELKESVPFAIIGSNTVIEVAGTKVLI 146
L D E +Q C + + + + + F +I S++ +A KV +
Sbjct: 35 LYSDKESYPLQ------CWQSASQGSLTLEFDSDKDIQFVLIDSDSNQPLASAKVKV 85
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.316 0.134 0.365
Gapped
Lambda K H
0.267 0.0767 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 17,617,753
Number of extensions: 1769858
Number of successful extensions: 2715
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2694
Number of HSP's successfully gapped: 95
Length of query: 339
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 241
Effective length of database: 6,590,910
Effective search space: 1588409310
Effective search space used: 1588409310
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (26.4 bits)