RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy97
(339 letters)
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein;
HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Length = 274
Score = 170 bits (432), Expect = 2e-51
Identities = 90/163 (55%), Positives = 124/163 (76%), Gaps = 9/163 (5%)
Query: 142 TKVLIIFYF------SLRQIDIETMRRLHHKVNIVPLIAKADTLTSAEVKKLKKKLLEDI 195
+V YF L+ +DIE M+RLH KVNI+PLIAKADTLT E ++ KK+++++I
Sbjct: 114 NRVQCCLYFIAPSGHGLKPLDIEFMKRLHEKVNIIPLIAKADTLTPEECQQFKKQIMKEI 173
Query: 196 EENQIQIYQFPECDSDEDEDFKQQDKELKESVPFAIIGSNTVIEVAGTKVRGRQYPWGVV 255
+E++I+IY+FPE D +E+ + K++K+ +P A++GSNT+IEV G +VRGRQYPWGV
Sbjct: 174 QEHKIKIYEFPETDDEEEN---KLVKKIKDRLPLAVVGSNTIIEVNGKRVRGRQYPWGVA 230
Query: 256 EVENPKHSDFNKLRNMLISTHMQDLKDVTEDVHYENFRAQCLS 298
EVEN +H DF LRNMLI THMQDLKDVT +VHYEN+R++ L+
Sbjct: 231 EVENGEHCDFTILRNMLIRTHMQDLKDVTNNVHYENYRSRKLA 273
Score = 87.9 bits (217), Expect = 3e-20
Identities = 52/120 (43%), Positives = 84/120 (70%), Gaps = 7/120 (5%)
Query: 36 IEENQIQVLIIFYFS----LRQIDIETMRRLHHKVNIVPLIAKADTLTSAEVKKLKKKLL 91
+ +N++Q + F L+ +DIE M+RLH KVNI+PLIAKADTLT E ++ KK+++
Sbjct: 111 MPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHEKVNIIPLIAKADTLTPEECQQFKKQIM 170
Query: 92 EDIEENQIQIYQFPECDSDEDEDFKQQDKELKESVPFAIIGSNTVIEVAGTKVLIIFYFS 151
++I+E++I+IY+FPE D +E+ + K++K+ +P A++GSNT+IEV G +V Y
Sbjct: 171 KEIQEHKIKIYEFPETDDEEEN---KLVKKIKDRLPLAVVGSNTIIEVNGKRVRGRQYPW 227
Score = 50.5 bits (120), Expect = 2e-07
Identities = 24/64 (37%), Positives = 41/64 (64%)
Query: 1 MRRLHHKVNIVPLIAKADTLTSAEVKKLKKKLLEDIEENQIQVLIIFYFSLRQIDIETMR 60
M+RLH KVNI+PLIAKADTLT E ++ KK+++++I+E++I++ + + +
Sbjct: 138 MKRLHEKVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKK 197
Query: 61 RLHH 64
Sbjct: 198 IKDR 201
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC,
mitosis, GDP, C cycle, cell division, GTP-binding,
nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB:
2qa5_A* 3ftq_A*
Length = 301
Score = 167 bits (424), Expect = 8e-50
Identities = 97/177 (54%), Positives = 135/177 (76%), Gaps = 7/177 (3%)
Query: 142 TKVLIIFYFS------LRQIDIETMRRLHHKVNIVPLIAKADTLTSAEVKKLKKKLLEDI 195
+V FYF L+ +D+ M+ +H+KVNIVP+IAKADTLT E ++LKK++L++I
Sbjct: 125 NRVHCCFYFISPFGHGLKPLDVAFMKAIHNKVNIVPVIAKADTLTLKERERLKKRILDEI 184
Query: 196 EENQIQIYQFPECDSDEDEDFKQQDKELKESVPFAIIGSNTVIEVAGTKVRGRQYPWGVV 255
EE+ I+IY P+ +SDEDEDFK+Q + LK S+PF+++GSN +IE G KVRGR YPWGVV
Sbjct: 185 EEHNIKIYHLPDAESDEDEDFKEQTRLLKASIPFSVVGSNQLIEAKGKKVRGRLYPWGVV 244
Query: 256 EVENPKHSDFNKLRNMLISTHMQDLKDVTEDVHYENFRAQCLSQISQRGDRGKLKKD 312
EVENP+H+DF KLR MLI THMQDL++VT+D+HYENFR++ L + ++ + + KD
Sbjct: 245 EVENPEHNDFLKLRTMLI-THMQDLQEVTQDLHYENFRSERLKRGGRKVENEDMNKD 300
Score = 87.9 bits (217), Expect = 5e-20
Identities = 57/114 (50%), Positives = 82/114 (71%), Gaps = 6/114 (5%)
Query: 42 QVLIIFYFS------LRQIDIETMRRLHHKVNIVPLIAKADTLTSAEVKKLKKKLLEDIE 95
+V FYF L+ +D+ M+ +H+KVNIVP+IAKADTLT E ++LKK++L++IE
Sbjct: 126 RVHCCFYFISPFGHGLKPLDVAFMKAIHNKVNIVPVIAKADTLTLKERERLKKRILDEIE 185
Query: 96 ENQIQIYQFPECDSDEDEDFKQQDKELKESVPFAIIGSNTVIEVAGTKVLIIFY 149
E+ I+IY P+ +SDEDEDFK+Q + LK S+PF+++GSN +IE G KV Y
Sbjct: 186 EHNIKIYHLPDAESDEDEDFKEQTRLLKASIPFSVVGSNQLIEAKGKKVRGRLY 239
Score = 48.3 bits (114), Expect = 1e-06
Identities = 25/43 (58%), Positives = 38/43 (88%)
Query: 1 MRRLHHKVNIVPLIAKADTLTSAEVKKLKKKLLEDIEENQIQV 43
M+ +H+KVNIVP+IAKADTLT E ++LKK++L++IEE+ I++
Sbjct: 149 MKAIHNKVNIVPVIAKADTLTLKERERLKKRILDEIEEHNIKI 191
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 427
Score = 169 bits (429), Expect = 3e-49
Identities = 70/184 (38%), Positives = 107/184 (58%), Gaps = 7/184 (3%)
Query: 152 LRQIDIETMRRLHHKVNIVPLIAKADTLTSAEVKKLKKKLLEDIEENQIQIYQFPECDSD 211
L+ +D+ TM++L KVNI+P+IAKAD ++ +E+ K K K+ ++ N +QIYQFP
Sbjct: 162 LKSLDLVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFP----T 217
Query: 212 EDEDFKQQDKELKESVPFAIIGSNTVIEVAGTKVRGRQYPWGVVEVENPKHSDFNKLRNM 271
+DE + + + +PFA+IGS +++ +R RQYPWG V+VEN H DF KLR M
Sbjct: 218 DDESVAEINGTMNAHLPFAVIGSTEELKIGNKMMRARQYPWGTVQVENEAHCDFVKLREM 277
Query: 272 LISTHMQDLKDVTEDVHYENFRAQCLSQISQRGDRGKLKKDS---APDGLITETDRLLLE 328
LI +M+DL++ T HYE +R L ++ + K S + E L +
Sbjct: 278 LIRVNMEDLREQTHTRHYELYRRCKLEEMGFKDTDPDSKPFSLQETYEAKRNEFLGELQK 337
Query: 329 KDEE 332
K+EE
Sbjct: 338 KEEE 341
Score = 90.2 bits (223), Expect = 3e-20
Identities = 40/121 (33%), Positives = 69/121 (57%), Gaps = 8/121 (6%)
Query: 33 LEDIEENQIQVLIIF----YFSLRQIDIETMRRLHHKVNIVPLIAKADTLTSAEVKKLKK 88
L +++I V + F SL+ +D+ TM++L KVNI+P+IAKAD ++ +E+ K K
Sbjct: 140 LHTYHDSRIHVCLYFIAPTGHSLKSLDLVTMKKLDSKVNIIPIIAKADAISKSELTKFKI 199
Query: 89 KLLEDIEENQIQIYQFPECDSDEDEDFKQQDKELKESVPFAIIGSNTVIEVAGTKVLIIF 148
K+ ++ N +QIYQFP +DE + + + +PFA+IGS +++ +
Sbjct: 200 KITSELVSNGVQIYQFP----TDDESVAEINGTMNAHLPFAVIGSTEELKIGNKMMRARQ 255
Query: 149 Y 149
Y
Sbjct: 256 Y 256
Score = 51.7 bits (123), Expect = 2e-07
Identities = 18/43 (41%), Positives = 31/43 (72%)
Query: 1 MRRLHHKVNIVPLIAKADTLTSAEVKKLKKKLLEDIEENQIQV 43
M++L KVNI+P+IAKAD ++ +E+ K K K+ ++ N +Q+
Sbjct: 170 MKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQI 212
>2qag_C Septin-7; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 418
Score = 161 bits (409), Expect = 2e-46
Identities = 90/181 (49%), Positives = 129/181 (71%), Gaps = 3/181 (1%)
Query: 152 LRQIDIETMRRLHHKVNIVPLIAKADTLTSAEVKKLKKKLLEDIEENQIQIYQFPECDSD 211
L+ +DIE M+RLH KVNI+PLIAKADTLT E ++ KK+++++I+E++I+IY+FPE D +
Sbjct: 153 LKPLDIEFMKRLHEKVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHKIKIYEFPETDDE 212
Query: 212 EDEDFKQQDKELKESVPFAIIGSNTVIEVAGTKVRGRQYPWGVVEVENPKHSDFNKLRNM 271
E+ + K++K+ +P A++GSNT+IEV G +VRGRQYPWGV EVEN +H DF LRNM
Sbjct: 213 EEN---KLVKKIKDRLPLAVVGSNTIIEVNGKRVRGRQYPWGVAEVENGEHCDFTILRNM 269
Query: 272 LISTHMQDLKDVTEDVHYENFRAQCLSQISQRGDRGKLKKDSAPDGLITETDRLLLEKDE 331
LI THMQDLKDVT +VHYEN+R++ L+ ++ G K + + + E
Sbjct: 270 LIRTHMQDLKDVTNNVHYENYRSRKLAAVTYNGVDNNKNKGQLTKSPLAQMEEERREHVA 329
Query: 332 E 332
+
Sbjct: 330 K 330
Score = 81.4 bits (200), Expect = 3e-17
Identities = 52/118 (44%), Positives = 84/118 (71%), Gaps = 7/118 (5%)
Query: 36 IEENQIQVLIIFY----FSLRQIDIETMRRLHHKVNIVPLIAKADTLTSAEVKKLKKKLL 91
+ +N++Q + F L+ +DIE M+RLH KVNI+PLIAKADTLT E ++ KK+++
Sbjct: 134 MPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHEKVNIIPLIAKADTLTPEECQQFKKQIM 193
Query: 92 EDIEENQIQIYQFPECDSDEDEDFKQQDKELKESVPFAIIGSNTVIEVAGTKVLIIFY 149
++I+E++I+IY+FPE D +E+ + K++K+ +P A++GSNT+IEV G +V Y
Sbjct: 194 KEIQEHKIKIYEFPETDDEEEN---KLVKKIKDRLPLAVVGSNTIIEVNGKRVRGRQY 248
Score = 48.3 bits (114), Expect = 2e-06
Identities = 24/44 (54%), Positives = 38/44 (86%)
Query: 1 MRRLHHKVNIVPLIAKADTLTSAEVKKLKKKLLEDIEENQIQVL 44
M+RLH KVNI+PLIAKADTLT E ++ KK+++++I+E++I++
Sbjct: 161 MKRLHEKVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHKIKIY 204
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 361
Score = 156 bits (394), Expect = 8e-45
Identities = 101/197 (51%), Positives = 142/197 (72%), Gaps = 18/197 (9%)
Query: 142 TKVLIIFYF------SLRQIDIETMRRLHHKVNIVPLIAKADTLTSAEVKKLKKKLLEDI 195
+V FYF L+ +D+ M+ +H+KVNIVP+IAKADTLT E ++LKK++L++I
Sbjct: 144 NRVHCCFYFISPFGHGLKPLDVAFMKAIHNKVNIVPVIAKADTLTLKERERLKKRILDEI 203
Query: 196 EENQIQIYQFPECDSDEDEDFKQQDKELKESVPFAIIGSNTVIEVAGTKVRGRQYPWGVV 255
EE+ I+IY P+ +SDEDEDFK+Q + LK S+PF+++GSN +IE G KVRGR YPWGVV
Sbjct: 204 EEHNIKIYHLPDAESDEDEDFKEQTRLLKASIPFSVVGSNQLIEAKGKKVRGRLYPWGVV 263
Query: 256 EVENPKHSDFNKLRNMLISTHMQDLKDVTEDVHYENFRAQCLSQISQRGDRGKLKKDSAP 315
EVENP+H+DF KLR MLI THMQDL++VT+D+HYENFR++ L + ++ + +
Sbjct: 264 EVENPEHNDFLKLRTMLI-THMQDLQEVTQDLHYENFRSERLKRGGRKVENEDM------ 316
Query: 316 DGLITETDRLLLEKDEE 332
D++LLEK+ E
Sbjct: 317 -----NKDQILLEKEAE 328
Score = 82.2 bits (202), Expect = 1e-17
Identities = 57/114 (50%), Positives = 82/114 (71%), Gaps = 6/114 (5%)
Query: 42 QVLIIFYF------SLRQIDIETMRRLHHKVNIVPLIAKADTLTSAEVKKLKKKLLEDIE 95
+V FYF L+ +D+ M+ +H+KVNIVP+IAKADTLT E ++LKK++L++IE
Sbjct: 145 RVHCCFYFISPFGHGLKPLDVAFMKAIHNKVNIVPVIAKADTLTLKERERLKKRILDEIE 204
Query: 96 ENQIQIYQFPECDSDEDEDFKQQDKELKESVPFAIIGSNTVIEVAGTKVLIIFY 149
E+ I+IY P+ +SDEDEDFK+Q + LK S+PF+++GSN +IE G KV Y
Sbjct: 205 EHNIKIYHLPDAESDEDEDFKEQTRLLKASIPFSVVGSNQLIEAKGKKVRGRLY 258
Score = 46.8 bits (110), Expect = 5e-06
Identities = 25/43 (58%), Positives = 38/43 (88%)
Query: 1 MRRLHHKVNIVPLIAKADTLTSAEVKKLKKKLLEDIEENQIQV 43
M+ +H+KVNIVP+IAKADTLT E ++LKK++L++IEE+ I++
Sbjct: 168 MKAIHNKVNIVPVIAKADTLTLKERERLKKRILDEIEEHNIKI 210
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 56.6 bits (136), Expect = 7e-09
Identities = 67/379 (17%), Positives = 124/379 (32%), Gaps = 111/379 (29%)
Query: 16 KADTLTSAEVKKLKK-KLLEDIEENQIQVLIIF--------YFSLRQIDIETMRRLHH-- 64
A + K L + E Q++ IF YF E +R L+
Sbjct: 128 TARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFE------E-LRDLYQTY 180
Query: 65 KVNIVPLIAKADTLTSAEVKKLKKKLLEDIEENQIQIYQFPECDSDE-DEDFKQQDKELK 123
V + LI + S ++ E + + I ++ E S+ D+D+ L
Sbjct: 181 HVLVGDLIKFSAETLSELIRTTLDA--EKVFTQGLNILEWLENPSNTPDKDY------LL 232
Query: 124 ESVPFA--IIGSNTVIEVAGTKVLIIFYFSLRQIDI---ETMRRLH----HKVNIVP--L 172
S+P + +IG VI++A + + + + E L H +V
Sbjct: 233 -SIPISCPLIG---VIQLAH------YVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVA 282
Query: 173 IAKADTLTSAEVKKLKKKLLEDIEENQIQIYQ------------FPECDSDEDEDFKQQD 220
IA+ D+ E + + +P +
Sbjct: 283 IAETDS-------------WESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSIL--EDS 327
Query: 221 KELKESVP---FAIIG-SNTVIEVAGTKVRGRQYPWGVVEVENPKHSDFNKLRNMLISTH 276
E E VP +I + ++ K VE+ S N +N+++S
Sbjct: 328 LENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEI-----SLVNGAKNLVVSGP 382
Query: 277 MQDLKDVTEDVHYENFRA-----QCLSQI--SQRGDRGKLKKD------SAP---DGLIT 320
Q L + ++ +A Q S+I S+R KLK ++P L+
Sbjct: 383 PQSLYGL--NLTLRKAKAPSGLDQ--SRIPFSER----KLKFSNRFLPVASPFHSHLLVP 434
Query: 321 ETDRL---LLEKDEEVSAS 336
+D + L++ + +A
Sbjct: 435 ASDLINKDLVKNNVSFNAK 453
Score = 34.3 bits (78), Expect = 0.065
Identities = 37/222 (16%), Positives = 72/222 (32%), Gaps = 86/222 (38%)
Query: 115 FKQQDKELKESVPFAIIGSNTVIEVAGTKVLIIFYFSLRQIDIETMRRLHHKVNIVPLIA 174
+ + D K++ F+I+ ++ + I F E +R+ N +I
Sbjct: 1646 WNRADNHFKDTYGFSILD---IVINNPVNLTIHF-------GGEKGKRIRE--NYSAMIF 1693
Query: 175 KADTLTSAEVKKLKKKLLEDIEENQIQIYQFPECDSDEDE----DFKQQDKELKESVPFA 230
+ T + K +K+ ++I E+ Y F S++ F Q P A
Sbjct: 1694 E----TIVDGKLKTEKIFKEINEH-STSYTF---RSEKGLLSATQFTQ---------P-A 1735
Query: 231 IIGSNTVIEVAGTKV-RGRQYPWGVVEVENPK------HSDFNKLRNML--------IST 275
+ T++E A + + G++ P HS L ++
Sbjct: 1736 L----TLMEKAAFEDLKS----KGLI----PADATFAGHS--------LGEYAALASLAD 1775
Query: 276 HMQDLKDVTEDVHYENFRAQCLSQISQRGDRGKLKKDSAPDG 317
M ++ + E V Y RG + + P
Sbjct: 1776 VM-SIESLVEVVFY----------------RGMTMQVAVPRD 1800
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 49.9 bits (118), Expect = 8e-07
Identities = 48/347 (13%), Positives = 104/347 (29%), Gaps = 94/347 (27%)
Query: 11 VPLIAKADTLTSAEVKKLKKKLLEDIEENQIQVLIIFYFSLRQIDIETMRRLHHKVN--I 68
+ L + TLT EVK L K L+ + + R N
Sbjct: 289 ISLDHHSMTLTPDEVKSLLLKYLD-------------------CRPQDLPREVLTTNPRR 329
Query: 69 VPLIA---KADTLTSAEVKKLKKKLLEDIEENQIQIYQFPECDSDEDEDFKQQDKELKES 125
+ +IA + T K + L I E+ + + E ++++ L
Sbjct: 330 LSIIAESIRDGLATWDNWKHVNCDKLTTIIESSL--------NVLEPAEYRKMFDRL--- 378
Query: 126 VPFAIIGSNTVIEVAGTKVLIIFYFSLRQIDIET-MRRLHHKVNIVPLIAKADTLTSAEV 184
++ + I T +L + +F + + D+ + +LH L+ K ++ +
Sbjct: 379 ---SVFPPSAHIP---TILLSLIWFDVIKSDVMVVVNKLHKY----SLVEKQPKESTISI 428
Query: 185 ----KKLKKKLLEDIEENQ--IQIYQFPECDSDEDEDFKQQDK----------------E 222
+LK KL + ++ + Y P+ +D D+ E
Sbjct: 429 PSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPE 488
Query: 223 LKESVP-----FAIIGSNTVIEVAGTKVRGRQYPWGVVEVENPKHSDFNKLRN------- 270
F + K+R W +
Sbjct: 489 RMTLFRMVFLDFRFLEQ---------KIRHDSTAWNASGSILNTLQQLKFYKPYICDNDP 539
Query: 271 ---MLISTHMQDLKDVTEDVHYENFRAQCLSQISQRGDRGKLKKDSA 314
L++ + L + E++ + L +I+ + + +++
Sbjct: 540 KYERLVNAILDFLPKIEENLICSKYT--DLLRIALMAEDEAIFEEAH 584
Score = 49.9 bits (118), Expect = 9e-07
Identities = 48/374 (12%), Positives = 106/374 (28%), Gaps = 142/374 (37%)
Query: 20 LTSAEVKKLKK---------KLLEDIEENQIQVLIIFYFSLRQID--------------- 55
L+ E+ + +L + Q +++ F + +I+
Sbjct: 46 LSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQP 105
Query: 56 -------IETMRRLHHKVNIVPLIAKADTLTSAEVKKLKKKLLEDIEENQIQIYQFPECD 108
IE RL+ N + AK + KL++ LLE + I
Sbjct: 106 SMMTRMYIEQRDRLY---NDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSG 162
Query: 109 SDEDEDFKQ-------QDKELKESVPFAIIGSNTVIEVAGTKVLIIFYFSLRQID----- 156
K +++ + F IF+ +L+ +
Sbjct: 163 -------KTWVALDVCLSYKVQCKMDFK-----------------IFWLNLKNCNSPETV 198
Query: 157 IETMRRLHHKV----NIVPLIAKADTLTSAEVKKLKKKL------------LEDIEENQI 200
+E +++L +++ + L ++ ++L L +++ +
Sbjct: 199 LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKA 258
Query: 201 QIYQF-PEC-------DSD-----------------------EDE---------DFKQQD 220
F C DE D + QD
Sbjct: 259 -WNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD 317
Query: 221 --KELKESVPFAIIGSNTVIEVAGTKVRGRQYPWGVVEVENPKHSDFNKLRNMLISTHMQ 278
+E+ + P + ++I +R W +N KH + +KL +I + +
Sbjct: 318 LPREVLTTNPRRL----SII---AESIRDGLATW-----DNWKHVNCDKL-TTIIESSLN 364
Query: 279 DLKDVTEDVHYENF 292
L+ ++
Sbjct: 365 VLEPAEYRKMFDRL 378
Score = 39.5 bits (91), Expect = 0.001
Identities = 44/245 (17%), Positives = 85/245 (34%), Gaps = 60/245 (24%)
Query: 18 DTLTSAEVKKLKKKLL---ED--IEENQIQVLIIFYFSLRQIDIET-MRRLHHKVNIVPL 71
+ L AE +K+ +L I +L + +F + + D+ + +LH L
Sbjct: 364 NVLEPAEYRKMFDRLSVFPPSAHIPT---ILLSLIWFDVIKSDVMVVVNKLHKY----SL 416
Query: 72 IAKADTLTSAEV----KKLKKKLLEDIEENQ--IQIYQFPECDSDEDEDFKQQDKELKES 125
+ K ++ + +LK KL + ++ + Y P+ +D D+
Sbjct: 417 VEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYF--- 473
Query: 126 VPFAIIG---SNTVIEVAGTKVLI-IFYFSLRQIDIETMRRLHH-------KVNIVPL-- 172
++ IG N IE L + + R ++ +++ H +I+
Sbjct: 474 --YSHIGHHLKN--IEHPERMTLFRMVFLDFRFLE----QKIRHDSTAWNASGSILNTLQ 525
Query: 173 --------IAKADTLTSAEVKKLKKKLLEDIEENQI--------QIYQFPECDSDEDEDF 216
I D V + L IEEN I +I E ++ +E
Sbjct: 526 QLKFYKPYICDNDPKYERLVNAILD-FLPKIEENLICSKYTDLLRIALMAEDEAIFEEAH 584
Query: 217 KQQDK 221
KQ +
Sbjct: 585 KQVQR 589
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 34.9 bits (79), Expect = 0.012
Identities = 9/58 (15%), Positives = 16/58 (27%), Gaps = 32/58 (55%)
Query: 82 EVKKLKKKLLEDIEENQIQIYQFPECDSDEDEDFKQQDKELKESVP-FAIIGSNTVIE 138
+KKL + +++Y +S P AI +E
Sbjct: 21 ALKKL---------QASLKLYA-D------------------DSAPALAI---KATME 47
Score = 34.9 bits (79), Expect = 0.012
Identities = 9/58 (15%), Positives = 16/58 (27%), Gaps = 32/58 (55%)
Query: 183 EVKKLKKKLLEDIEENQIQIYQFPECDSDEDEDFKQQDKELKESVP-FAIIGSNTVIE 239
+KKL + +++Y +S P AI +E
Sbjct: 21 ALKKL---------QASLKLYA-D------------------DSAPALAI---KATME 47
Score = 27.2 bits (59), Expect = 4.7
Identities = 11/32 (34%), Positives = 13/32 (40%), Gaps = 10/32 (31%)
Query: 295 QCLSQISQRGDRGKLKK---DSAPDGL-ITET 322
Q L ++ LK DSAP L I T
Sbjct: 20 QALKKLQ-----ASLKLYADDSAP-ALAIKAT 45
>3zxn_A RSBS, anti-sigma-factor antagonist (STAS) domain protei;
transcription, gene regulation; 1.90A {Moorella
thermoacetica} PDB: 2vy9_A 3ztb_A*
Length = 123
Score = 32.7 bits (75), Expect = 0.054
Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 3/63 (4%)
Query: 10 IVPLIAKADTLTSAEVKKLKKKLLEDIEENQIQVLIIFYFSLRQIDIETMRRLHHKVNIV 69
+V + TL V + K++LL +I + L+I +L +D R L +
Sbjct: 15 VVAIEE---TLHDQSVIQFKEELLHNITGVAGKGLVIDISALEVVDEFVTRVLIEISRLA 71
Query: 70 PLI 72
L+
Sbjct: 72 ELL 74
>1yrl_A Ketol-acid reductoisomerase; branched-chain amino acid
biosynthesis, knotted protein, oxidoreductase; 2.60A
{Escherichia coli}
Length = 491
Score = 32.0 bits (73), Expect = 0.31
Identities = 31/209 (14%), Positives = 58/209 (27%), Gaps = 58/209 (27%)
Query: 82 EVKKLKKKLLEDI----------EENQIQIYQFPECDSDEDEDFKQQDKELKESVPFAII 131
+ L +K ++DI + + + + + + + +
Sbjct: 295 IMAPLFQKHMDDIISGEFSSGMMADWANDDKKLLTWREETGKTAFETAPQYEGKIGEQEY 354
Query: 132 GSNTVIEVAGTKVLIIFYFSLRQIDIETMRR------------LHHKVNIVPLIAKA--- 176
V+ +A K + F ETM LH I IA+
Sbjct: 355 FDKGVLMIAMVKAGVELAF-------ETMVDSGIIEESAYYESLHELPLIANTIARKRLY 407
Query: 177 -------DT------LTSAEVKKLKKKLLEDIEENQIQIYQFPECDSDEDEDFKQQDKEL 223
DT L S L K + +++ + PE D + + ++
Sbjct: 408 EMNVVISDTAEYGNYLFSYACVPLLKPFMAELQPGDLG-KAIPEGAVD-NGQLRDVNEA- 464
Query: 224 KESVPFAIIGSNTVIEVAGTKVRGRQYPW 252
+ IE G K+RG
Sbjct: 465 ---------IRSHAIEQVGKKLRGY-MTD 483
>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding
protein complex, transferase metal protein complex,
nucleus; HET: ANP; 2.65A {Homo sapiens}
Length = 305
Score = 29.9 bits (68), Expect = 1.1
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 10/54 (18%)
Query: 18 DTLTSAEVKKLKKKLLEDIEENQIQVLIIFYFSLRQIDIETMRRLHHKVNIVPL 71
+TL VK LKKK L I + V ++I + +RRL HK N++ L
Sbjct: 28 ETLCRRAVKILKKKKLRRIPNGEANVK-------KEIQL--LRRLRHK-NVIQL 71
>2h8l_A Protein disulfide-isomerase A3; thioredoxin-like fold; 2.00A {Homo
sapiens}
Length = 252
Score = 28.5 bits (63), Expect = 2.7
Identities = 16/151 (10%), Positives = 44/151 (29%), Gaps = 10/151 (6%)
Query: 79 TSAEVKKLKKKLLEDIEENQIQIYQFPECDSDEDEDFKQQDKELKESVPFAIIGSNTVIE 138
T E KK +++ + F + S+ +F + L+++ FA +++
Sbjct: 13 TEEEFKKFIS------DKDASIVGFFDDSFSEAHSEFLKAASNLRDNYRFAHTNVESLVN 66
Query: 139 VAGTKVLIIFYF----SLRQIDIETMRRLHHKVNIVPLIAKADTLTSAEVKKLKKKLLED 194
I F + + +T+ K+ + + + +
Sbjct: 67 EYDDNGEGIILFRPSHLTNKFEDKTVAYTEQKMTSGKIKKFIQENIFGICPHMTEDNKDL 126
Query: 195 IEENQIQIYQFPECDSDEDEDFKQQDKELKE 225
I+ + I + + +
Sbjct: 127 IQGKDLLIAYYDVDYEKNAKGSNYWRNRVMM 157
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 28.7 bits (64), Expect = 3.4
Identities = 17/106 (16%), Positives = 35/106 (33%), Gaps = 28/106 (26%)
Query: 188 KKKLL------EDIEENQIQIYQFPECDSDEDEDFKQQDKELKESVPFAIIGSNTVIEVA 241
KK+++ ED+E E + E FK Q + + G +V +
Sbjct: 919 KKEMIQEVIVEEDLE--------PFEASKETAEQFKHQHGDKVDIFEIPETGEYSVKLLK 970
Query: 242 GTKV---RGRQYPWGVV-EVENPKHSDFNKLRNMLISTHMQDLKDV 283
G + + ++ V ++ P +N T+ +
Sbjct: 971 GATLYIPKALRFDRLVAGQI--PT--GWN------AKTYGISDDII 1006
>2hqx_A P100 CO-activator tudor domain; human P100 tudor domain,
proteolytic fragment, PSI, structural genomics; 1.42A
{Homo sapiens} SCOP: b.34.9.1 PDB: 2hqe_A 3omc_A*
3omg_A* 2o4x_A 2e6n_A 2o4x_B
Length = 246
Score = 27.7 bits (61), Expect = 5.8
Identities = 16/146 (10%), Positives = 47/146 (32%), Gaps = 14/146 (9%)
Query: 76 DTLTSAEVKKLKKKLLEDIEENQIQIYQFPECD-SDEDEDFKQQDKELKESVPFAIIGSN 134
+ L S + L + Q Y F +D+ + + N
Sbjct: 106 EVLPSTRLGTLSPAFSTRVLPAQATEYAFAFIQVPQDDDARTDAVDSVVRDIQNTQCLLN 165
Query: 135 TVIEVAGTKVLIIFYFSLRQIDI-ETMRRLHHKVNIVPLIAKADTLTSAEVKKLKKKLLE 193
V ++ + F+ + D+ + + + + +K+ + L
Sbjct: 166 -VEHLSAGCPHVTLQFADSKGDVGLGLVKEGL--------VMVEVRKEKQFQKVITEYLN 216
Query: 194 DIEE---NQIQIYQFPECDSDEDEDF 216
E ++ ++++ + +D+ ++F
Sbjct: 217 AQESAKSARLNLWRYGDFRADDADEF 242
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase,
cell division, cell cycle, SEP GTP-binding; 2.20A
{Burkholderia thailandensis}
Length = 223
Score = 27.3 bits (61), Expect = 6.5
Identities = 12/50 (24%), Positives = 16/50 (32%), Gaps = 4/50 (8%)
Query: 5 HHKVNIVPLIAKADTLTSAEVKK----LKKKLLEDIEENQIQVLIIFYFS 50
I L+ K D LT E +K L + L + FS
Sbjct: 142 PTGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDAGYAGKLTVQLFS 191
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 27.0 bits (59), Expect = 6.7
Identities = 10/56 (17%), Positives = 24/56 (42%), Gaps = 8/56 (14%)
Query: 72 IAKADTLTSAEVKKLKKKLLEDIEE------NQIQIYQFPECDSDEDEDFKQQDKE 121
+ + D + ++ ++K +D+EE Q++ + + D+ F QQ
Sbjct: 98 LQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNK--INNRIADKAFYQQPDA 151
Score = 27.0 bits (59), Expect = 6.7
Identities = 10/56 (17%), Positives = 24/56 (42%), Gaps = 8/56 (14%)
Query: 173 IAKADTLTSAEVKKLKKKLLEDIEE------NQIQIYQFPECDSDEDEDFKQQDKE 222
+ + D + ++ ++K +D+EE Q++ + + D+ F QQ
Sbjct: 98 LQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNK--INNRIADKAFYQQPDA 151
>2kpt_A Putative secreted protein; methods development, alpha/beta,
structural genomics, PSI-2, protein structure
initiative; NMR {Corynebacterium glutamicum}
Length = 148
Score = 26.4 bits (58), Expect = 9.2
Identities = 5/41 (12%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
Query: 17 ADTLTSAEVKKLKKKL--LEDIEENQIQVLIIFYFSLRQID 55
++S+++ ++ + ++ E+ I V+ + F +
Sbjct: 21 TGQISSSDITNIQAAIDDVKASEQKVIFVVFLSSFDGVDPE 61
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.134 0.365
Gapped
Lambda K H
0.267 0.0729 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,223,938
Number of extensions: 329946
Number of successful extensions: 1043
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1018
Number of HSP's successfully gapped: 69
Length of query: 339
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 245
Effective length of database: 4,077,219
Effective search space: 998918655
Effective search space used: 998918655
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.1 bits)