RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy97
         (339 letters)



>d1jb0b_ f.29.1.1 (B:) Apoprotein a2, PsaB {Synechococcus elongatus
           [TaxId: 32046]}
          Length = 739

 Score = 29.0 bits (65), Expect = 0.82
 Identities = 10/34 (29%), Positives = 14/34 (41%), Gaps = 3/34 (8%)

Query: 47  FYFSLR---QIDIETMRRLHHKVNIVPLIAKADT 77
           F  S R   Q  IET+   H +  +  L+   D 
Sbjct: 669 FLISWRGYWQELIETLVWAHERTPLANLVRWKDK 702



 Score = 29.0 bits (65), Expect = 0.82
 Identities = 10/34 (29%), Positives = 14/34 (41%), Gaps = 3/34 (8%)

Query: 148 FYFSLR---QIDIETMRRLHHKVNIVPLIAKADT 178
           F  S R   Q  IET+   H +  +  L+   D 
Sbjct: 669 FLISWRGYWQELIETLVWAHERTPLANLVRWKDK 702


>d1jb0a_ f.29.1.1 (A:) Apoprotein a1, PsaA {Synechococcus elongatus
           [TaxId: 32046]}
          Length = 743

 Score = 28.3 bits (63), Expect = 1.7
 Identities = 11/29 (37%), Positives = 16/29 (55%), Gaps = 3/29 (10%)

Query: 47  FYFSLR---QIDIETMRRLHHKVNIVPLI 72
           F FS R   Q  IE++   H+K+ + P I
Sbjct: 677 FLFSGRGYWQELIESIVWAHNKLKVAPAI 705



 Score = 28.3 bits (63), Expect = 1.7
 Identities = 11/29 (37%), Positives = 16/29 (55%), Gaps = 3/29 (10%)

Query: 148 FYFSLR---QIDIETMRRLHHKVNIVPLI 173
           F FS R   Q  IE++   H+K+ + P I
Sbjct: 677 FLFSGRGYWQELIESIVWAHNKLKVAPAI 705


>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain
           {Bacillus subtilis [TaxId: 1423]}
          Length = 185

 Score = 26.8 bits (58), Expect = 2.8
 Identities = 18/160 (11%), Positives = 49/160 (30%), Gaps = 11/160 (6%)

Query: 53  QIDIETMRRLHHKVNIVPLIAKADTLTSAEVKKLKKKLLEDIEENQIQIYQFPECDSDED 112
            +    M       + V          + +   L  + L  IE  ++ ++       +  
Sbjct: 36  LVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGR 95

Query: 113 EDFKQQDKELKESVPFAIIGSNTVIEVAGTKVLIIFYFSLRQIDIETMRRLHHKVNIVPL 172
           + +       +E   + +  +     +   K+ +       +       +L     + P+
Sbjct: 96  DPYDDYLTINQELSEYNLRLTERPQIIVANKMDMP---EAAENLEAFKEKLTDDYPVFPI 152

Query: 173 IAKADTLTSAEVKKLKKKLLEDIEENQIQIYQFPECDSDE 212
            A     T   +++L  ++   +E       +FP  D +E
Sbjct: 153 SAV----TREGLRELLFEVANQLENTP----EFPLYDEEE 184


>d2nn6g3 d.51.1.1 (G:195-274) Ribosomal RNA-processing protein 40,
           RRP40 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 80

 Score = 25.4 bits (56), Expect = 3.0
 Identities = 12/75 (16%), Positives = 26/75 (34%), Gaps = 20/75 (26%)

Query: 120 KELKESVPFAI-IGSNTVIEVAGTKVLIIFYFSLRQIDIETMRRLHHKVNIVPLIAKADT 178
           +E+ +  P  I  G N  I V    +                      + +  ++   + 
Sbjct: 24  QEVGKLYPLEIVFGMNGRIWVKAKTI-------------------QQTLILANILEACEH 64

Query: 179 LTSAEVKKLKKKLLE 193
           +TS + K++  +L E
Sbjct: 65  MTSDQRKQIFSRLAE 79



 Score = 24.6 bits (54), Expect = 5.5
 Identities = 5/31 (16%), Positives = 16/31 (51%)

Query: 4  LHHKVNIVPLIAKADTLTSAEVKKLKKKLLE 34
          +   + +  ++   + +TS + K++  +L E
Sbjct: 49 IQQTLILANILEACEHMTSDQRKQIFSRLAE 79



 Score = 24.6 bits (54), Expect = 5.5
 Identities = 5/31 (16%), Positives = 16/31 (51%)

Query: 62 LHHKVNIVPLIAKADTLTSAEVKKLKKKLLE 92
          +   + +  ++   + +TS + K++  +L E
Sbjct: 49 IQQTLILANILEACEHMTSDQRKQIFSRLAE 79


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.134    0.365 

Gapped
Lambda     K      H
   0.267   0.0661    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,250,149
Number of extensions: 61619
Number of successful extensions: 242
Number of sequences better than 10.0: 1
Number of HSP's gapped: 242
Number of HSP's successfully gapped: 29
Length of query: 339
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 253
Effective length of database: 1,226,816
Effective search space: 310384448
Effective search space used: 310384448
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.3 bits)