Query psy9704
Match_columns 116
No_of_seqs 143 out of 832
Neff 6.5
Searched_HMMs 46136
Date Fri Aug 16 17:31:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9704.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9704hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02151 trehalose-phosphatase 99.9 1.8E-25 3.9E-30 179.4 9.7 113 2-115 136-337 (354)
2 PF02358 Trehalose_PPase: Treh 99.9 9E-25 2E-29 164.8 7.2 111 2-113 37-235 (235)
3 PLN03017 trehalose-phosphatase 99.9 4.3E-24 9.2E-29 172.1 10.2 113 2-115 149-351 (366)
4 PLN02580 trehalose-phosphatase 99.9 6.4E-24 1.4E-28 172.0 9.9 46 69-115 322-369 (384)
5 COG1877 OtsB Trehalose-6-phosp 99.9 3.5E-21 7.6E-26 149.7 10.4 108 2-113 58-242 (266)
6 PLN03063 alpha,alpha-trehalose 99.8 1.1E-19 2.3E-24 158.2 10.8 41 2-42 550-590 (797)
7 PLN02205 alpha,alpha-trehalose 99.8 5.1E-19 1.1E-23 155.0 9.7 110 2-115 634-837 (854)
8 PRK10187 trehalose-6-phosphate 99.8 2.1E-18 4.6E-23 133.2 10.3 110 2-115 54-236 (266)
9 TIGR00685 T6PP trehalose-phosp 99.7 1.7E-17 3.7E-22 126.0 8.8 111 2-115 43-235 (244)
10 PRK14501 putative bifunctional 99.7 2.3E-16 4.9E-21 135.9 10.6 110 2-115 532-716 (726)
11 PLN03064 alpha,alpha-trehalose 99.5 1.2E-13 2.6E-18 122.1 10.0 41 2-42 640-680 (934)
12 KOG1050|consensus 99.0 1.1E-09 2.4E-14 95.2 8.9 109 2-115 535-726 (732)
13 TIGR02471 sucr_syn_bact_C sucr 98.4 1.9E-06 4.1E-11 64.6 7.7 35 2-36 31-69 (236)
14 TIGR01484 HAD-SF-IIB HAD-super 98.4 1.6E-06 3.5E-11 63.3 7.1 39 2-40 34-72 (204)
15 PF08282 Hydrolase_3: haloacid 97.8 9.1E-05 2E-09 54.0 7.2 40 2-41 32-73 (254)
16 PRK01158 phosphoglycolate phos 97.6 0.00056 1.2E-08 50.5 8.1 42 69-113 175-217 (230)
17 TIGR01487 SPP-like sucrose-pho 97.5 0.00064 1.4E-08 50.1 7.3 39 2-40 35-75 (215)
18 COG0561 Cof Predicted hydrolas 97.4 0.0014 3.1E-08 49.6 8.3 36 2-37 37-74 (264)
19 TIGR01482 SPP-subfamily Sucros 97.2 0.0022 4.7E-08 47.1 7.9 42 69-113 167-209 (225)
20 PRK15126 thiamin pyrimidine py 97.1 0.0033 7.2E-08 47.9 7.8 39 2-40 36-76 (272)
21 PRK10513 sugar phosphate phosp 97.1 0.0036 7.8E-08 47.4 7.9 42 69-113 214-256 (270)
22 COG1778 Low specificity phosph 97.0 0.00088 1.9E-08 49.1 3.8 75 2-98 52-127 (170)
23 TIGR00099 Cof-subfamily Cof su 97.0 0.005 1.1E-07 46.4 7.8 39 2-40 33-73 (256)
24 PF05116 S6PP: Sucrose-6F-phos 96.9 0.0045 9.7E-08 47.4 6.9 35 2-36 36-74 (247)
25 KOG1050|consensus 96.5 0.00043 9.3E-09 60.8 -1.1 35 4-38 229-273 (732)
26 cd01427 HAD_like Haloacid deha 96.4 0.0095 2.1E-07 38.9 5.2 84 2-89 41-135 (139)
27 TIGR02461 osmo_MPG_phos mannos 96.2 0.062 1.3E-06 40.5 9.1 37 2-38 32-70 (225)
28 TIGR01485 SPP_plant-cyano sucr 95.8 0.12 2.6E-06 38.9 9.3 36 2-37 38-77 (249)
29 TIGR01670 YrbI-phosphatas 3-de 94.7 0.11 2.5E-06 36.7 5.8 91 2-113 45-136 (154)
30 TIGR02726 phenyl_P_delta pheny 94.6 0.096 2.1E-06 38.2 5.4 90 2-112 51-141 (169)
31 PRK09484 3-deoxy-D-manno-octul 94.0 0.078 1.7E-06 38.6 3.8 88 2-110 65-153 (183)
32 TIGR01486 HAD-SF-IIB-MPGP mann 93.6 0.091 2E-06 39.7 3.7 38 2-39 33-72 (256)
33 PLN02382 probable sucrose-phos 92.7 1.6 3.4E-05 36.1 9.8 28 69-99 196-224 (413)
34 COG4030 Uncharacterized protei 92.0 0.24 5.2E-06 38.9 4.0 27 69-95 208-235 (315)
35 TIGR00338 serB phosphoserine p 91.4 0.73 1.6E-05 33.6 5.9 103 2-112 102-210 (219)
36 TIGR02463 MPGP_rel mannosyl-3- 91.1 0.34 7.3E-06 35.5 3.9 36 2-37 33-71 (221)
37 PRK10976 putative hydrolase; P 90.9 0.45 9.8E-06 35.9 4.5 39 2-40 36-76 (266)
38 TIGR01486 HAD-SF-IIB-MPGP mann 90.3 0.56 1.2E-05 35.4 4.6 28 69-99 196-223 (256)
39 PRK11133 serB phosphoserine ph 90.2 0.81 1.8E-05 36.6 5.6 101 2-111 198-305 (322)
40 TIGR01491 HAD-SF-IB-PSPlk HAD- 90.1 2.2 4.8E-05 30.2 7.4 90 2-98 97-191 (201)
41 PRK10530 pyridoxal phosphate ( 89.8 0.27 5.9E-06 36.9 2.5 43 69-114 217-260 (272)
42 TIGR01662 HAD-SF-IIIA HAD-supe 89.3 3.2 6.9E-05 27.8 7.3 79 2-95 42-130 (132)
43 PRK13222 phosphoglycolate phos 88.5 1.7 3.6E-05 31.5 5.8 100 2-115 110-217 (226)
44 PLN02954 phosphoserine phospha 88.4 3.2 7E-05 30.2 7.4 107 2-115 101-219 (224)
45 PRK10976 putative hydrolase; P 88.2 0.39 8.4E-06 36.2 2.3 28 69-99 208-235 (266)
46 PRK03669 mannosyl-3-phosphogly 87.1 0.78 1.7E-05 35.0 3.5 36 2-37 41-79 (271)
47 TIGR02253 CTE7 HAD superfamily 86.1 5.6 0.00012 28.8 7.4 97 2-115 111-220 (221)
48 PRK11587 putative phosphatase; 86.0 4.1 9E-05 29.8 6.8 44 69-115 157-203 (218)
49 COG0546 Gph Predicted phosphat 85.9 2.2 4.8E-05 31.6 5.3 103 2-115 106-213 (220)
50 PRK10530 pyridoxal phosphate ( 85.7 1.4 3.1E-05 33.0 4.2 48 2-49 37-88 (272)
51 PRK03669 mannosyl-3-phosphogly 84.9 1.7 3.7E-05 33.1 4.3 26 69-97 208-233 (271)
52 PF13242 Hydrolase_like: HAD-h 84.9 1.6 3.5E-05 26.9 3.5 43 69-114 23-74 (75)
53 PRK00192 mannosyl-3-phosphogly 83.5 1.6 3.6E-05 33.2 3.7 36 2-37 38-75 (273)
54 PRK00192 mannosyl-3-phosphogly 83.4 1.3 2.8E-05 33.8 3.1 28 69-99 209-236 (273)
55 PRK13288 pyrophosphatase PpaX; 83.0 1.4 3.1E-05 32.0 3.1 100 2-115 99-206 (214)
56 TIGR01454 AHBA_synth_RP 3-amin 82.6 4 8.6E-05 29.4 5.3 100 2-115 92-199 (205)
57 PRK10826 2-deoxyglucose-6-phos 82.5 3.3 7.1E-05 30.3 4.9 102 2-115 109-215 (222)
58 PLN02779 haloacid dehalogenase 82.3 9.2 0.0002 29.7 7.6 104 2-116 161-269 (286)
59 TIGR01449 PGP_bact 2-phosphogl 82.2 2.9 6.2E-05 30.1 4.4 100 2-115 102-209 (213)
60 TIGR01512 ATPase-IB2_Cd heavy 81.3 2.3 4.9E-05 36.1 4.1 84 3-109 381-466 (536)
61 PLN02887 hydrolase family prot 81.1 1.6 3.4E-05 37.8 3.1 42 69-113 525-567 (580)
62 PLN02423 phosphomannomutase 80.8 2.9 6.3E-05 31.8 4.2 39 2-41 40-82 (245)
63 TIGR01525 ATPase-IB_hvy heavy 80.3 11 0.00025 31.9 8.0 87 2-111 402-489 (556)
64 PTZ00174 phosphomannomutase; P 80.1 2.5 5.4E-05 31.9 3.6 35 2-36 39-77 (247)
65 TIGR01422 phosphonatase phosph 80.0 6.8 0.00015 29.3 5.9 80 2-97 116-202 (253)
66 PRK13226 phosphoglycolate phos 79.8 6 0.00013 29.3 5.5 101 2-115 112-220 (229)
67 PRK11033 zntA zinc/cadmium/mer 79.1 8 0.00017 34.3 6.9 72 2-98 585-656 (741)
68 PRK13223 phosphoglycolate phos 78.9 7.4 0.00016 29.9 6.0 100 2-115 118-225 (272)
69 TIGR03351 PhnX-like phosphonat 78.9 9.9 0.00021 27.5 6.4 103 2-114 104-214 (220)
70 COG0560 SerB Phosphoserine pho 78.8 3.2 7E-05 31.1 3.8 91 2-99 94-189 (212)
71 TIGR01544 HAD-SF-IE haloacid d 77.7 17 0.00037 28.7 7.7 91 2-96 138-240 (277)
72 TIGR02463 MPGP_rel mannosyl-3- 77.4 2.2 4.7E-05 31.2 2.5 18 69-86 197-214 (221)
73 PF13419 HAD_2: Haloacid dehal 76.6 6.8 0.00015 26.4 4.7 23 1-23 93-115 (176)
74 PLN02575 haloacid dehalogenase 76.2 7.7 0.00017 32.0 5.6 100 2-115 233-337 (381)
75 TIGR01489 DKMTPPase-SF 2,3-dik 75.3 22 0.00049 24.6 7.2 21 2-22 89-109 (188)
76 TIGR01511 ATPase-IB1_Cu copper 73.1 23 0.00049 30.3 7.9 85 2-110 422-507 (562)
77 TIGR01452 PGP_euk phosphoglyco 72.9 4.8 0.0001 30.9 3.5 44 69-115 221-279 (279)
78 PLN02770 haloacid dehalogenase 72.9 10 0.00022 28.6 5.2 100 2-115 125-231 (248)
79 TIGR02137 HSK-PSP phosphoserin 72.2 15 0.00033 27.1 6.0 85 2-98 84-172 (203)
80 PRK12702 mannosyl-3-phosphogly 72.0 5.4 0.00012 32.0 3.6 38 2-39 35-74 (302)
81 PRK10444 UMP phosphatase; Prov 70.3 4.4 9.6E-05 31.0 2.7 44 69-115 193-245 (248)
82 PRK13582 thrH phosphoserine ph 69.6 17 0.00038 25.9 5.6 101 2-115 84-191 (205)
83 PRK14502 bifunctional mannosyl 69.0 6.7 0.00014 34.9 3.8 38 2-39 450-489 (694)
84 PRK13478 phosphonoacetaldehyde 68.9 35 0.00076 25.7 7.4 83 2-97 118-204 (267)
85 PLN03243 haloacid dehalogenase 68.2 11 0.00024 28.9 4.6 100 2-115 126-230 (260)
86 PTZ00174 phosphomannomutase; P 65.7 5.1 0.00011 30.2 2.2 26 69-94 202-231 (247)
87 PLN02940 riboflavin kinase 65.3 32 0.00068 28.0 6.9 96 2-115 110-216 (382)
88 TIGR01497 kdpB K+-transporting 65.1 34 0.00074 30.3 7.4 74 2-98 463-536 (675)
89 TIGR01533 lipo_e_P4 5'-nucleot 64.9 17 0.00036 28.5 5.0 16 69-84 190-205 (266)
90 TIGR01428 HAD_type_II 2-haloal 64.4 26 0.00056 24.9 5.7 82 2-97 109-193 (198)
91 PLN02887 hydrolase family prot 63.9 10 0.00023 32.8 4.0 39 2-40 342-391 (580)
92 TIGR01490 HAD-SF-IB-hyp1 HAD-s 61.7 37 0.0008 24.1 6.1 86 2-96 104-197 (202)
93 TIGR01675 plant-AP plant acid 59.6 18 0.00038 27.8 4.2 18 2-19 137-157 (229)
94 TIGR01488 HAD-SF-IB Haloacid D 57.8 5.7 0.00012 27.6 1.2 77 2-85 90-176 (177)
95 PRK09449 dUMP phosphatase; Pro 52.6 12 0.00026 27.1 2.3 44 69-115 170-218 (224)
96 smart00775 LNS2 LNS2 domain. T 52.5 81 0.0018 22.3 7.2 90 2-97 44-150 (157)
97 TIGR01689 EcbF-BcbF capsule bi 52.2 13 0.00027 25.9 2.2 33 2-37 41-88 (126)
98 PF00702 Hydrolase: haloacid d 52.0 12 0.00025 26.5 2.0 68 2-86 144-214 (215)
99 PF12710 HAD: haloacid dehalog 51.4 14 0.00031 25.7 2.4 76 2-84 106-192 (192)
100 PRK14010 potassium-transportin 48.6 82 0.0018 28.0 7.0 74 2-98 458-531 (673)
101 PHA02530 pseT polynucleotide k 47.6 30 0.00065 26.4 3.8 83 2-95 204-295 (300)
102 KOG3040|consensus 47.3 18 0.00038 28.2 2.4 25 69-95 200-225 (262)
103 PHA02597 30.2 hypothetical pro 47.0 6.8 0.00015 28.0 0.2 44 69-115 147-194 (197)
104 TIGR00213 GmhB_yaeD D,D-heptos 46.2 17 0.00037 25.8 2.1 45 69-116 125-175 (176)
105 TIGR01116 ATPase-IIA1_Ca sarco 45.9 20 0.00042 32.6 2.9 42 66-111 630-672 (917)
106 PF12218 End_N_terminal: N ter 45.5 30 0.00065 21.7 2.8 28 72-99 1-39 (67)
107 PRK08238 hypothetical protein; 45.4 74 0.0016 26.9 6.1 77 2-98 89-167 (479)
108 PLN02811 hydrolase 42.9 20 0.00044 26.2 2.2 44 69-115 159-206 (220)
109 TIGR01656 Histidinol-ppas hist 41.7 20 0.00043 24.7 1.9 24 69-95 120-144 (147)
110 PRK09456 ?-D-glucose-1-phospha 41.2 19 0.00041 25.9 1.8 27 69-98 160-187 (199)
111 KOG4619|consensus 40.0 16 0.00034 24.4 1.0 13 69-81 87-100 (105)
112 TIGR01672 AphA HAD superfamily 39.9 34 0.00073 26.2 3.0 30 69-98 186-215 (237)
113 TIGR01990 bPGM beta-phosphoglu 39.7 23 0.0005 24.6 2.0 25 69-96 160-185 (185)
114 TIGR01457 HAD-SF-IIA-hyp2 HAD- 39.1 47 0.001 25.1 3.7 43 69-114 197-248 (249)
115 COG4087 Soluble P-type ATPase 39.1 32 0.0007 24.8 2.6 47 66-114 93-141 (152)
116 PRK06769 hypothetical protein; 38.8 14 0.00031 26.3 0.8 26 69-97 112-138 (173)
117 COG3769 Predicted hydrolase (H 38.2 1.6E+02 0.0035 23.2 6.5 38 2-39 40-80 (274)
118 TIGR01664 DNA-3'-Pase DNA 3'-p 38.1 1.4E+02 0.0031 21.1 7.0 9 69-77 129-137 (166)
119 TIGR01668 YqeG_hyp_ppase HAD s 37.2 35 0.00075 24.2 2.6 76 2-98 60-138 (170)
120 TIGR03333 salvage_mtnX 2-hydro 37.1 23 0.00051 25.8 1.7 20 2-21 87-106 (214)
121 PRK11590 hypothetical protein; 36.8 1.6E+02 0.0036 21.3 7.4 87 2-98 113-204 (211)
122 PRK08942 D,D-heptose 1,7-bisph 36.7 79 0.0017 22.3 4.4 25 69-96 122-147 (181)
123 TIGR01524 ATPase-IIIB_Mg magne 36.2 39 0.00084 30.6 3.2 29 66-98 602-630 (867)
124 PF06223 Phage_tail_T: Minor t 35.9 36 0.00079 23.2 2.3 24 75-98 76-99 (103)
125 TIGR01458 HAD-SF-IIA-hyp3 HAD- 35.4 38 0.00082 25.8 2.7 26 69-97 198-225 (257)
126 PF06888 Put_Phosphatase: Puta 35.4 25 0.00055 27.0 1.7 85 2-91 90-193 (234)
127 PLN02645 phosphoglycolate phos 35.4 35 0.00076 26.7 2.6 26 69-97 249-276 (311)
128 TIGR01456 CECR5 HAD-superfamil 35.3 35 0.00075 26.9 2.5 27 69-98 265-293 (321)
129 TIGR01647 ATPase-IIIA_H plasma 34.1 41 0.00089 29.9 3.0 29 66-98 534-562 (755)
130 PF09890 DUF2117: Uncharacteri 33.9 25 0.00053 27.0 1.4 11 68-78 200-210 (215)
131 TIGR01460 HAD-SF-IIA Haloacid 33.9 39 0.00084 25.3 2.5 25 69-96 208-234 (236)
132 TIGR02468 sucrsPsyn_pln sucros 32.8 46 0.001 31.2 3.2 36 2-37 805-846 (1050)
133 PLN02423 phosphomannomutase 32.6 36 0.00078 25.7 2.1 27 69-97 202-232 (245)
134 PRK10671 copA copper exporting 32.2 51 0.0011 29.5 3.3 27 69-98 714-740 (834)
135 PF05412 Peptidase_C33: Equine 31.0 43 0.00093 23.0 2.1 32 77-110 42-74 (108)
136 PRK10517 magnesium-transportin 30.7 52 0.0011 30.0 3.1 29 66-98 637-665 (902)
137 TIGR03360 VI_minor_1 type VI s 30.7 51 0.0011 24.7 2.6 28 4-31 130-160 (185)
138 PLN02919 haloacid dehalogenase 29.4 3.1E+02 0.0068 25.6 7.9 102 2-115 178-285 (1057)
139 PRK09552 mtnX 2-hydroxy-3-keto 28.2 38 0.00083 24.7 1.6 20 2-21 91-110 (219)
140 PRK14502 bifunctional mannosyl 27.1 64 0.0014 28.9 2.9 27 69-98 633-659 (694)
141 TIGR01715 phage_lam_T phage ta 27.0 54 0.0012 22.2 2.0 22 77-98 77-98 (100)
142 PRK10725 fructose-1-P/6-phosph 26.8 60 0.0013 22.6 2.4 81 2-96 103-186 (188)
143 COG0384 Predicted epimerase, P 26.6 1.3E+02 0.0028 23.9 4.4 36 63-98 16-54 (291)
144 TIGR01548 HAD-SF-IA-hyp1 haloa 26.1 51 0.0011 23.5 1.9 22 2-23 123-144 (197)
145 PRK15122 magnesium-transportin 25.7 66 0.0014 29.4 2.9 29 66-98 637-665 (903)
146 PRK11009 aphA acid phosphatase 25.3 72 0.0016 24.4 2.7 26 69-97 186-212 (237)
147 COG2217 ZntA Cation transport 25.2 78 0.0017 28.3 3.2 29 66-98 599-627 (713)
148 PRK13225 phosphoglycolate phos 25.1 30 0.00064 26.8 0.5 98 2-115 159-263 (273)
149 PRK01122 potassium-transportin 25.0 77 0.0017 28.2 3.1 29 66-98 507-535 (679)
150 COG4859 Uncharacterized protei 24.9 39 0.00085 22.8 1.0 12 71-82 45-56 (105)
151 TIGR01509 HAD-SF-IA-v3 haloaci 24.7 54 0.0012 22.4 1.8 24 69-95 159-183 (183)
152 TIGR01993 Pyr-5-nucltdase pyri 23.7 53 0.0012 23.0 1.6 21 3-23 99-119 (184)
153 TIGR00093 pseudouridine syntha 23.5 65 0.0014 21.8 2.0 29 2-31 79-107 (128)
154 TIGR02254 YjjG/YfnB HAD superf 23.4 45 0.00097 23.8 1.2 101 2-115 113-220 (224)
155 COG1210 GalU UDP-glucose pyrop 23.1 61 0.0013 26.0 1.9 19 3-21 52-70 (291)
156 PF03332 PMM: Eukaryotic phosp 23.1 80 0.0017 24.3 2.5 37 2-38 12-53 (220)
157 TIGR02009 PGMB-YQAB-SF beta-ph 22.8 65 0.0014 22.3 1.9 16 69-84 161-176 (185)
158 TIGR01522 ATPase-IIA2_Ca golgi 21.2 1.1E+02 0.0023 27.8 3.3 41 66-110 617-659 (884)
159 PF06490 FleQ: Flagellar regul 20.9 1.5E+02 0.0032 19.7 3.3 31 3-33 45-81 (109)
160 TIGR01106 ATPase-IIC_X-K sodiu 20.5 55 0.0012 30.1 1.4 42 66-111 683-726 (997)
161 cd01452 VWA_26S_proteasome_sub 20.4 1.6E+02 0.0034 21.8 3.6 30 69-98 110-147 (187)
162 cd01830 XynE_like SGNH_hydrola 20.4 61 0.0013 23.2 1.4 10 70-79 2-11 (204)
163 TIGR01459 HAD-SF-IIA-hyp4 HAD- 20.2 88 0.0019 23.2 2.3 24 69-95 215-240 (242)
164 PF13382 Adenine_deam_C: Adeni 20.2 1.5E+02 0.0032 21.7 3.4 37 69-109 67-106 (171)
No 1
>PLN02151 trehalose-phosphatase
Probab=99.92 E-value=1.8e-25 Score=179.38 Aligned_cols=113 Identities=29% Similarity=0.407 Sum_probs=79.9
Q ss_pred ceEEEEcCCCHhhHHHhcCCCCccEEeccCceeecCCCc--ee------cCCCcHHH-----------------------
Q psy9704 2 CTSLLISGRNVHNVMEMVGIEGLTYAGNHGLEIIHPDGS--RF------VHPIPTEC----------------------- 50 (116)
Q Consensus 2 ~~vaIVSGR~~~~l~~~l~~~~~~~aG~HG~e~~~~~g~--~~------~~~~~~~~----------------------- 50 (116)
++|||||||++++|++++++.+++|+|+||+|++.|++. +. ......+|
T Consensus 136 ~~vaIvSGR~~~~l~~~~~~~~l~laGsHG~e~~~p~~g~~~~~~~~~~~~~~~~~~~~~i~~v~~~l~~~~~~~pG~~V 215 (354)
T PLN02151 136 FPTAIVSGRCREKVSSFVKLTELYYAGSHGMDIKGPEQGSKYKKENQSLLCQPATEFLPVINEVYKKLVEKTKSIPGAKV 215 (354)
T ss_pred CCEEEEECCCHHHHHHHcCCccceEEEeCCceeecCCCCccccccccccccccchhhHHHHHHHHHHHHHHHhcCCCCEE
Confidence 479999999999999999999999999999999877431 11 11111111
Q ss_pred -------HHHH-----------------HHHHhCCC------------------------------CCCCc--eeEEEEe
Q psy9704 51 -------ASIY-----------------ILRTAFGL------------------------------DWTER--VKIIYAG 74 (116)
Q Consensus 51 -------a~~~-----------------~l~~~~g~------------------------------~~~~~--~~pv~iG 74 (116)
+.|| .+...+++ +|.++ .+|||||
T Consensus 216 E~K~~slavHYR~a~~~~~~~l~~~l~~v~~~~~~l~v~~GkkVvEvrP~~~~dKG~Av~~Ll~~~~~~~~~~~~pvyiG 295 (354)
T PLN02151 216 ENNKFCASVHFRCVEENKWSDLANQVRSVLKNYPKLMLTQGRKVLEIRPIIKWDKGKALEFLLESLGYANCTDVFPIYIG 295 (354)
T ss_pred EecCcEEEEEeCCCChHHHHHHHHHHHHHHhhCCCcEEecCCEEEEEeCCCCCCHHHHHHHHHHhcccccCCCCeEEEEc
Confidence 0011 01111111 12222 3799999
Q ss_pred CCCccHHHHHhhhC--CCcEEEEcCCCCCCccceeecCCCCCC
Q psy9704 75 DDVTDEDAMEALKG--MAATFRVTQSQIVKTAAERRLPSKPWI 115 (116)
Q Consensus 75 DD~TDEdaF~al~~--~g~~i~VG~~~~~~T~A~~~l~~~~ev 115 (116)
||+||||||++|++ .|++|+||..+ .+|.|+|+|++|++|
T Consensus 296 DD~TDEDaF~~L~~~~~G~gI~Vg~~~-k~T~A~y~L~dp~eV 337 (354)
T PLN02151 296 DDRTDEDAFKILRDKKQGLGILVSKYA-KETNASYSLQEPDEV 337 (354)
T ss_pred CCCcHHHHHHHHhhcCCCccEEeccCC-CCCcceEeCCCHHHH
Confidence 99999999999986 36699999532 389999999999886
No 2
>PF02358 Trehalose_PPase: Trehalose-phosphatase; InterPro: IPR003337 Trehalose-phosphatases 3.1.3.12 from EC catalyse the de-phosphorylation of trehalose-6-phosphate to trehalose and orthophosphate. Trehalose is a common disaccharide of bacteria, fungi and invertebrates that appears to play a major role in desiccation tolerance. A pathway for trehalose biosynthesis may also exist in plants []. The trehalose-phosphatase signature is found in the C terminus of trehalose-6-phosphate synthase 2.4.1.15 from EC adjacent to the trehalose-6-phosphate synthase domain (see IPR001830 from INTERPRO). It would appear that the two equivalent genes in the Escherichia coli otsBA operon: otsA, the trehalose-6-phosphate synthase and otsB, trehalose-phosphatase (this family) have undergone gene fusion in most eukaryotes [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1U02_A.
Probab=99.91 E-value=9e-25 Score=164.83 Aligned_cols=111 Identities=33% Similarity=0.473 Sum_probs=58.7
Q ss_pred ceEEEEcCCCHhhHHHhcCCCCccEEeccCceeecCCCceecC---CCcHHH----------------------------
Q psy9704 2 CTSLLISGRNVHNVMEMVGIEGLTYAGNHGLEIIHPDGSRFVH---PIPTEC---------------------------- 50 (116)
Q Consensus 2 ~~vaIVSGR~~~~l~~~l~~~~~~~aG~HG~e~~~~~g~~~~~---~~~~~~---------------------------- 50 (116)
+.|+|||||++++++++++++++.|+||||+|++.+++..... ....+|
T Consensus 37 ~~v~IvSGR~~~~~~~~~~~~~i~l~gehG~e~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~pG~~iE~K~~sv~ 116 (235)
T PF02358_consen 37 NTVAIVSGRSLDDLERFGGIPNIGLAGEHGAEIRRPGGSEWTNLPADEDLEWKDEVREILEYFAERTPGSFIEDKEFSVA 116 (235)
T ss_dssp --EEEE-SS-HHHHHHH-S-SS-EEEEGGGTEEEETTE-EEE-TTGGGGHHHHHHHHHHHTTHHHHSTT-EEEEETTEEE
T ss_pred CEEEEEEeCCHHHhHHhcCCCCceEEEEeeEEeccCccccccccccccchHHHHHHHHHHHHHHhhccCcEEEECCeEEE
Confidence 4699999999999999999999999999999999988754322 112223
Q ss_pred --------------HHHH--H----HHHhCCC-----------------------------CCC---CceeEEEEeCCCc
Q psy9704 51 --------------ASIY--I----LRTAFGL-----------------------------DWT---ERVKIIYAGDDVT 78 (116)
Q Consensus 51 --------------a~~~--~----l~~~~g~-----------------------------~~~---~~~~pv~iGDD~T 78 (116)
+.++ . +...+++ ++. .+ +++|+|||+|
T Consensus 117 ~Hyr~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~g~~~vEvrp~~~~KG~av~~ll~~~~~~~~~~~-~~l~~GDD~t 195 (235)
T PF02358_consen 117 FHYRNAPPEFGEAQARELAEQLREILASHPGLEVVPGKKVVEVRPPGVNKGSAVRRLLEELPFAGPKPD-FVLYIGDDRT 195 (235)
T ss_dssp EE-TTS-ST----THHHHHHHHHHHHHHH-T-EEEE-SSEEEEE-TT--HHHHHHHHHTTS----------EEEEESSHH
T ss_pred EEecCCCcchhhhHHHHHHHHHHHHHHhCCCEEEEECCCEEEEEeCCCChHHHHHHHHHhcCccccccc-eeEEecCCCC
Confidence 0110 0 0111121 111 34 8999999999
Q ss_pred cHHHHHhhhCC---CcEEEEcCCC--CCCccceeecCCCC
Q psy9704 79 DEDAMEALKGM---AATFRVTQSQ--IVKTAAERRLPSKP 113 (116)
Q Consensus 79 DEdaF~al~~~---g~~i~VG~~~--~~~T~A~~~l~~~~ 113 (116)
||+||+++++. +.+|+||..+ ..+|.|+|+|+||.
T Consensus 196 DE~~f~~~~~~~~~~~~i~V~~~~~~~~~t~A~y~l~~p~ 235 (235)
T PF02358_consen 196 DEDAFRALRELEEGGFGIKVGSVSVGEKPTAASYRLDDPS 235 (235)
T ss_dssp HHHHHHTTTTS----EEEEES-------------------
T ss_pred CHHHHHHHHhcccCCCCeEEEeecccccccccccccccCC
Confidence 99999999998 7799998752 34799999999984
No 3
>PLN03017 trehalose-phosphatase
Probab=99.91 E-value=4.3e-24 Score=172.06 Aligned_cols=113 Identities=26% Similarity=0.393 Sum_probs=80.2
Q ss_pred ceEEEEcCCCHhhHHHhcCCCCccEEeccCceeecCCCceec---------CCCcHHH----------------------
Q psy9704 2 CTSLLISGRNVHNVMEMVGIEGLTYAGNHGLEIIHPDGSRFV---------HPIPTEC---------------------- 50 (116)
Q Consensus 2 ~~vaIVSGR~~~~l~~~l~~~~~~~aG~HG~e~~~~~g~~~~---------~~~~~~~---------------------- 50 (116)
+.++|+|||++++++++++..+++|+|+||++++.|++.+.. .....+|
T Consensus 149 ~~vaIvSGR~~~~l~~~~~l~~l~l~g~hGa~i~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~L~~~~~~~pGa~ 228 (366)
T PLN03017 149 FPTAIVTGRCIDKVYNFVKLAELYYAGSHGMDIKGPAKGFSRHKRVKQSLLYQPANDYLPMIDEVYRQLLEKTKSTPGAK 228 (366)
T ss_pred CcEEEEeCCCHHHHHHhhcccCceEEEcCCcEEecCCCcceeccccccccccccchhhHHHHHHHHHHHHHHHhcCCCCE
Confidence 579999999999999999888899999999999877543211 1111111
Q ss_pred --------HHHH-----------------HHHHhCCC---------------C---------------CCC--ceeEEEE
Q psy9704 51 --------ASIY-----------------ILRTAFGL---------------D---------------WTE--RVKIIYA 73 (116)
Q Consensus 51 --------a~~~-----------------~l~~~~g~---------------~---------------~~~--~~~pv~i 73 (116)
+.|| .+...+++ . |.+ ..+||||
T Consensus 229 VE~K~~~vavHyR~ad~~~~~~l~~~~~~vl~~~~~l~v~~GkkVlEvRP~~~~dKG~Av~~LL~~l~~~~~~~~~pvyi 308 (366)
T PLN03017 229 VENHKFCASVHFRCVDEKKWSELVLQVRSVLKNFPTLKLTQGRKVFEIRPMIEWDKGKALEFLLESLGFGNTNNVFPVYI 308 (366)
T ss_pred EEecCcEEEEEcCcCCHHHHHHHHHHHHHHHHhCCCcEEeCCCeEEEecCCCCCCHHHHHHHHHHhcccccCCCceEEEe
Confidence 1111 11111111 1 221 2389999
Q ss_pred eCCCccHHHHHhhhCC--CcEEEEcCCCCCCccceeecCCCCCC
Q psy9704 74 GDDVTDEDAMEALKGM--AATFRVTQSQIVKTAAERRLPSKPWI 115 (116)
Q Consensus 74 GDD~TDEdaF~al~~~--g~~i~VG~~~~~~T~A~~~l~~~~ev 115 (116)
|||+||||||++|++. |++|+||..+ .+|.|+|+|++|+||
T Consensus 309 GDD~TDEDaF~~L~~~~~G~gI~VG~~~-k~T~A~y~L~dp~eV 351 (366)
T PLN03017 309 GDDRTDEDAFKMLRDRGEGFGILVSKFP-KDTDASYSLQDPSEV 351 (366)
T ss_pred CCCCccHHHHHHHhhcCCceEEEECCCC-CCCcceEeCCCHHHH
Confidence 9999999999999874 5799999532 389999999999886
No 4
>PLN02580 trehalose-phosphatase
Probab=99.90 E-value=6.4e-24 Score=171.99 Aligned_cols=46 Identities=30% Similarity=0.312 Sum_probs=40.3
Q ss_pred eEEEEeCCCccHHHHHhhhCC--CcEEEEcCCCCCCccceeecCCCCCC
Q psy9704 69 KIIYAGDDVTDEDAMEALKGM--AATFRVTQSQIVKTAAERRLPSKPWI 115 (116)
Q Consensus 69 ~pv~iGDD~TDEdaF~al~~~--g~~i~VG~~~~~~T~A~~~l~~~~ev 115 (116)
+|+|||||.|||+||++|++. |++|+||..+ .+|.|+|+|++|+||
T Consensus 322 ~pi~iGDD~TDedmF~~L~~~~~G~~I~Vgn~~-~~t~A~y~L~dp~eV 369 (384)
T PLN02580 322 LPIYIGDDRTDEDAFKVLREGNRGYGILVSSVP-KESNAFYSLRDPSEV 369 (384)
T ss_pred eEEEECCCchHHHHHHhhhccCCceEEEEecCC-CCccceEEcCCHHHH
Confidence 689999999999999999875 6699998643 389999999999886
No 5
>COG1877 OtsB Trehalose-6-phosphatase [Carbohydrate transport and metabolism]
Probab=99.85 E-value=3.5e-21 Score=149.70 Aligned_cols=108 Identities=31% Similarity=0.495 Sum_probs=81.3
Q ss_pred ceEEEEcCCCHhhHHHhcCCCCccEEeccCceeecCCCceecCCCcHH---H---------------------------H
Q psy9704 2 CTSLLISGRNVHNVMEMVGIEGLTYAGNHGLEIIHPDGSRFVHPIPTE---C---------------------------A 51 (116)
Q Consensus 2 ~~vaIVSGR~~~~l~~~l~~~~~~~aG~HG~e~~~~~g~~~~~~~~~~---~---------------------------a 51 (116)
+.|+|+|||+.+++++|++++++.++|+||+|+|.++|.+.......+ | +
T Consensus 58 ~~v~iiSGR~~~~l~~~~~v~~i~l~aehGa~~r~~~g~~~~~~~~~~~~~~~~~v~~~l~~~v~r~pGs~iE~K~~a~~ 137 (266)
T COG1877 58 NVVAIISGRSLAELERLFGVPGIGLIAEHGAEVRDPNGKWWINLAEEADLRWLKEVAAILEYYVERTPGSYIERKGFAVA 137 (266)
T ss_pred CeEEEEeCCCHHHHHHhcCCCCccEEEecceEEecCCCCeeEecCHHHHhhHHHHHHHHHHHHhhcCCCeEEEEcCcEEE
Confidence 349999999999999999999999999999999999998643322111 1 0
Q ss_pred HHH-----------HHH-----Hh-------CC-----------------------CCCCCceeEEEEeCCCccHHHHHh
Q psy9704 52 SIY-----------ILR-----TA-------FG-----------------------LDWTERVKIIYAGDDVTDEDAMEA 85 (116)
Q Consensus 52 ~~~-----------~l~-----~~-------~g-----------------------~~~~~~~~pv~iGDD~TDEdaF~a 85 (116)
.|| .+. .. .| .++.++ +|+|+|||.|||++|++
T Consensus 138 ~Hyr~a~~~~~~~~a~~~~~~~~~~~~~~v~~gk~vVEvrp~~~~KG~a~~~i~~~~~~~~~-~~~~aGDD~TDE~~F~~ 216 (266)
T COG1877 138 LHYRNAEDDEGAALALAEAATLINELKLRVTPGKMVVELRPPGVSKGAAIKYIMDELPFDGR-FPIFAGDDLTDEDAFAA 216 (266)
T ss_pred EeeccCCchhhHHHHHHHHHhccccccEEEEeCceEEEEeeCCcchHHHHHHHHhcCCCCCC-cceecCCCCccHHHHHh
Confidence 111 000 00 01 034566 99999999999999999
Q ss_pred hhCCCc-EEEEcCCCCCCccceeecCCCC
Q psy9704 86 LKGMAA-TFRVTQSQIVKTAAERRLPSKP 113 (116)
Q Consensus 86 l~~~g~-~i~VG~~~~~~T~A~~~l~~~~ 113 (116)
++..+. +|+||.+ .|+|++++..+.
T Consensus 217 v~~~~~~~v~v~~~---~t~a~~~~~~~~ 242 (266)
T COG1877 217 VNKLDSITVKVGVG---STQAKFRLAGVY 242 (266)
T ss_pred hccCCCceEEecCC---cccccccccccH
Confidence 997654 9999987 899999987653
No 6
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=99.81 E-value=1.1e-19 Score=158.25 Aligned_cols=41 Identities=17% Similarity=0.216 Sum_probs=37.7
Q ss_pred ceEEEEcCCCHhhHHHhcCCCCccEEeccCceeecCCCcee
Q psy9704 2 CTSLLISGRNVHNVMEMVGIEGLTYAGNHGLEIIHPDGSRF 42 (116)
Q Consensus 2 ~~vaIVSGR~~~~l~~~l~~~~~~~aG~HG~e~~~~~g~~~ 42 (116)
+.|+|||||++++|++||++.++.++|+||+|++.+++.+.
T Consensus 550 ~~V~IvSGR~~~~L~~~~~~~~l~l~aeHG~~~r~~~~~w~ 590 (797)
T PLN03063 550 TTVVVLSRSGKDILDKNFGEYNIWLAAENGMFLRHTSGEWV 590 (797)
T ss_pred CEEEEEeCCCHHHHHHHhCCCCCcEEEeCCEEEecCCCcee
Confidence 68999999999999999999999999999999987777664
No 7
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Probab=99.78 E-value=5.1e-19 Score=154.97 Aligned_cols=110 Identities=20% Similarity=0.201 Sum_probs=78.3
Q ss_pred ceEEEEcCCCHhhHHHhcCCC-CccEEeccCceeecCCCc-eecC-C-CcHHH---------------------------
Q psy9704 2 CTSLLISGRNVHNVMEMVGIE-GLTYAGNHGLEIIHPDGS-RFVH-P-IPTEC--------------------------- 50 (116)
Q Consensus 2 ~~vaIVSGR~~~~l~~~l~~~-~~~~aG~HG~e~~~~~g~-~~~~-~-~~~~~--------------------------- 50 (116)
+.|+|||||++++|++||++. ++.++|+||++++.+++. +... + ....|
T Consensus 634 ~~VaIvSGR~~~~L~~~f~~~~~l~laaEHG~~ir~~~~~~w~~~~~~~~~~w~~~v~~i~~~y~ertpGs~IE~K~~sl 713 (854)
T PLN02205 634 NMVFIVSARSRKTLADWFSPCEKLGIAAEHGYFLRLKRDVEWETCVPVADCSWKQIAEPVMQLYTETTDGSTIEDKETAL 713 (854)
T ss_pred CEEEEEeCCCHHHHHHHhCCCCCeEEEEeCCEEEEeCCCceeeecchhhhHHHHHHHHHHHHHHhcCCCchhheecceEE
Confidence 679999999999999999874 699999999999877663 3211 1 11222
Q ss_pred ---------------HHHH--HHHH---hC------C----------C----------------CCCCceeEEEEeCCCc
Q psy9704 51 ---------------ASIY--ILRT---AF------G----------L----------------DWTERVKIIYAGDDVT 78 (116)
Q Consensus 51 ---------------a~~~--~l~~---~~------g----------~----------------~~~~~~~pv~iGDD~T 78 (116)
+.+. .+.. +. | + ....+ +++|||||.|
T Consensus 714 v~HyR~adpd~~~~qa~el~~~l~~~l~~~~~~v~~G~~vvEV~p~gvnKG~Al~~Ll~~~~~~g~~~d-~vl~~GDD~n 792 (854)
T PLN02205 714 VWCYEDADPDFGSCQAKELLDHLESVLANEPVTVKSGQNIVEVKPQGVSKGLVAKRLLSIMQERGMLPD-FVLCIGDDRS 792 (854)
T ss_pred EEehhhCChHHhhhhhHHHHHHHHHHHhcCceEEEECCcEEEEEeCCCCHHHHHHHHHHHHHhcCCCcc-cEEEEcCCcc
Confidence 0010 0000 00 1 0 01123 7899999999
Q ss_pred cHHHHHhhhCC-----------CcEEEEcCCCCCCccceeecCCCCCC
Q psy9704 79 DEDAMEALKGM-----------AATFRVTQSQIVKTAAERRLPSKPWI 115 (116)
Q Consensus 79 DEdaF~al~~~-----------g~~i~VG~~~~~~T~A~~~l~~~~ev 115 (116)
||+||++++.. +++|+||.+ +|.|+|+|++|+||
T Consensus 793 DedMF~~~~~~~~g~~~~~~~~~~~v~VG~~---~S~A~y~L~d~~eV 837 (854)
T PLN02205 793 DEDMFEVITSSMAGPSIAPRAEVFACTVGQK---PSKAKYYLDDTAEI 837 (854)
T ss_pred HHHHHHHhhhhccCCcccccccceeEEECCC---CccCeEecCCHHHH
Confidence 99999999742 368999987 89999999999876
No 8
>PRK10187 trehalose-6-phosphate phosphatase; Provisional
Probab=99.77 E-value=2.1e-18 Score=133.19 Aligned_cols=110 Identities=25% Similarity=0.386 Sum_probs=80.5
Q ss_pred ceEEEEcCCCHhhHHHhcCCCCccEEeccCceeecCCCceecCCCcHHHH------H---------------------HH
Q psy9704 2 CTSLLISGRNVHNVMEMVGIEGLTYAGNHGLEIIHPDGSRFVHPIPTECA------S---------------------IY 54 (116)
Q Consensus 2 ~~vaIVSGR~~~~l~~~l~~~~~~~aG~HG~e~~~~~g~~~~~~~~~~~a------~---------------------~~ 54 (116)
+.|+|+|||+.+.++++++..++.++|+||++++.+++.+.....+.+++ . ||
T Consensus 54 ~~v~i~SGR~~~~~~~~~~~~~~~~i~~nGa~i~~~~~~~~~~~l~~~~~~~i~~~l~~~~~~~pg~~ve~k~~~~~~h~ 133 (266)
T PRK10187 54 GALALISGRSMVELDALAKPYRFPLAGVHGAERRDINGKTHIVHLPDAIARDISVQLHTALAQLPGAELEAKGMAFALHY 133 (266)
T ss_pred CcEEEEeCCCHHHHHHhcCcccceEEEeCCCeeecCCCCeeeccCChhHHHHHHHHHHHHhccCCCcEEEeCCcEEEEEC
Confidence 47999999999999999998888999999999987666543232322220 0 00
Q ss_pred -----------HH----HHhCC------------------------------CCCCCceeEEEEeCCCccHHHHHhhhCC
Q psy9704 55 -----------IL----RTAFG------------------------------LDWTERVKIIYAGDDVTDEDAMEALKGM 89 (116)
Q Consensus 55 -----------~l----~~~~g------------------------------~~~~~~~~pv~iGDD~TDEdaF~al~~~ 89 (116)
.+ ...++ +++..+ .++|+|||.|||+||+.+++.
T Consensus 134 r~~~~~~~~~~~l~~~i~~~~~~~~~~~g~~~lEi~p~g~~Kg~al~~ll~~~~~~~~-~v~~~GD~~nD~~mf~~~~~~ 212 (266)
T PRK10187 134 RQAPQHEDALLALAQRITQIWPQLALQPGKCVVEIKPRGTNKGEAIAAFMQEAPFAGR-TPVFVGDDLTDEAGFAVVNRL 212 (266)
T ss_pred CCCCccHHHHHHHHHHHHhhCCceEEeCCCEEEEeeCCCCCHHHHHHHHHHhcCCCCC-eEEEEcCCccHHHHHHHHHhc
Confidence 00 00011 023345 799999999999999999765
Q ss_pred C-cEEEEcCCCCCCccceeecCCCCCC
Q psy9704 90 A-ATFRVTQSQIVKTAAERRLPSKPWI 115 (116)
Q Consensus 90 g-~~i~VG~~~~~~T~A~~~l~~~~ev 115 (116)
+ .+|.||+. .|.|+|+|++|++|
T Consensus 213 ~g~~vavg~a---~~~A~~~l~~~~~v 236 (266)
T PRK10187 213 GGISVKVGTG---ATQASWRLAGVPDV 236 (266)
T ss_pred CCeEEEECCC---CCcCeEeCCCHHHH
Confidence 4 59999987 79999999999876
No 9
>TIGR00685 T6PP trehalose-phosphatase. At least 18 distinct sequences from Arabidopsis have been identified, roughly half of these are of the fungal type, with a fused synthase and half are like the bacterial members having only the phosphatase domain. It has been suggested that trehalose is being used in Arabidopsis as a regulatory molecule in development and possibly other processes.
Probab=99.73 E-value=1.7e-17 Score=126.05 Aligned_cols=111 Identities=26% Similarity=0.273 Sum_probs=75.3
Q ss_pred ceEEEEcCCCHhhHHHhcCCCCccEEeccCceeecCCCcee---cCCC-cHHH---------------------------
Q psy9704 2 CTSLLISGRNVHNVMEMVGIEGLTYAGNHGLEIIHPDGSRF---VHPI-PTEC--------------------------- 50 (116)
Q Consensus 2 ~~vaIVSGR~~~~l~~~l~~~~~~~aG~HG~e~~~~~g~~~---~~~~-~~~~--------------------------- 50 (116)
+.|+|||||++.++.+++.++++.++|+||+|++. +|.+. ..+. ...|
T Consensus 43 ~~v~ivSGR~~~~~~~~~~~~~~~l~g~hG~~~~~-~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~pG~~iE~K~~s~~ 121 (244)
T TIGR00685 43 NAIWIISGRKFLEKWLGVKLPGLGLAGEHGCEMKD-NGSCQDWVNLTEKIPSWKVRANELREEITTRPGVFIERKGVALA 121 (244)
T ss_pred CeEEEEECCChhhccccCCCCceeEEeecCEEEec-CCCcceeeechhhhhhHHHHHHHHHHHHhcCCCcEEEecceEEE
Confidence 56899999999999999988999999999999986 44321 1110 0111
Q ss_pred -----------H----HHHHHH--HhCCC-----------------------------CCCCceeEEEEeCCCccHHHHH
Q psy9704 51 -----------A----SIYILR--TAFGL-----------------------------DWTERVKIIYAGDDVTDEDAME 84 (116)
Q Consensus 51 -----------a----~~~~l~--~~~g~-----------------------------~~~~~~~pv~iGDD~TDEdaF~ 84 (116)
+ .+.... ...++ ++... .++|||||.|||+||+
T Consensus 122 ~hyr~a~d~~~~~~~~~~~~~~~~~~~~~~v~~g~~~~e~~p~~~~Kg~a~~~~~~~~~~~~~-~~i~iGD~~~D~~~~~ 200 (244)
T TIGR00685 122 WHYRQAPVPELARFRAKELKEKILSFTDLEVMDGKAVVELKPRFVNKGEIVKRLLWHQPGSGI-SPVYLGDDITDEDAFR 200 (244)
T ss_pred EEeccCCCcHHHHHHHHHHHHHHhcCCCEEEEECCeEEEEeeCCCCHHHHHHHHHHhcccCCC-ceEEEcCCCcHHHHHH
Confidence 0 000000 01111 12234 7899999999999999
Q ss_pred hh----hCCC-cEEEEcCCCCCCccceeecCCCCCC
Q psy9704 85 AL----KGMA-ATFRVTQSQIVKTAAERRLPSKPWI 115 (116)
Q Consensus 85 al----~~~g-~~i~VG~~~~~~T~A~~~l~~~~ev 115 (116)
.+ .+.| .+|+|+.+ ...|.|+|++++|++|
T Consensus 201 ~~~~~~~~~g~~~v~v~~g-~~~~~A~~~~~~~~~v 235 (244)
T TIGR00685 201 VVNNQWGNYGFYPVPIGSG-SKKTVAKFHLTGPQQV 235 (244)
T ss_pred HHhcccCCCCeEEEEEecC-CcCCCceEeCCCHHHH
Confidence 99 3434 49999432 1379999999999875
No 10
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=99.68 E-value=2.3e-16 Score=135.91 Aligned_cols=110 Identities=28% Similarity=0.322 Sum_probs=82.6
Q ss_pred ceEEEEcCCCHhhHHHhcCCCCccEEeccCceeecCCCceecCC-CcHHH------------------------------
Q psy9704 2 CTSLLISGRNVHNVMEMVGIEGLTYAGNHGLEIIHPDGSRFVHP-IPTEC------------------------------ 50 (116)
Q Consensus 2 ~~vaIVSGR~~~~l~~~l~~~~~~~aG~HG~e~~~~~g~~~~~~-~~~~~------------------------------ 50 (116)
+.|+|+|||+..+++++|+..++.++|+||++++.+++.+.... ....|
T Consensus 532 ~~V~ivSGR~~~~l~~~~~~~~l~liaenG~~i~~~~~~w~~~~~~~~~w~~~v~~il~~~~~~~~gs~ie~k~~~l~~~ 611 (726)
T PRK14501 532 TDVAIISGRDRDTLERWFGDLPIHLVAEHGAWSRAPGGEWQLLEPVATEWKDAVRPILEEFVDRTPGSFIEEKEASLAWH 611 (726)
T ss_pred CeEEEEeCCCHHHHHHHhCCCCeEEEEeCCEEEeCCCCceEECCCcchhHHHHHHHHHHHHHhcCCCcEEEEcceEEEEE
Confidence 57999999999999999998899999999999987777654221 12222
Q ss_pred ------------HHHH--HHHH---hCCC---------------------------CCCCceeEEEEeCCCccHHHHHhh
Q psy9704 51 ------------ASIY--ILRT---AFGL---------------------------DWTERVKIIYAGDDVTDEDAMEAL 86 (116)
Q Consensus 51 ------------a~~~--~l~~---~~g~---------------------------~~~~~~~pv~iGDD~TDEdaF~al 86 (116)
+.+. .+.. ..++ ....+ +++++|||.|||+||+.+
T Consensus 612 ~r~~d~~~~~~~a~~l~~~l~~~~~~~~~~v~~g~~~veV~p~~vnKG~al~~ll~~~~~d-~vl~~GD~~nDe~Mf~~~ 690 (726)
T PRK14501 612 YRNADPELGEARANELILALSSLLSNAPLEVLRGNKVVEVRPAGVNKGRAVRRLLEAGPYD-FVLAIGDDTTDEDMFRAL 690 (726)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHhcCCCeEEEECCeEEEEEECCCCHHHHHHHHHhcCCCC-EEEEECCCCChHHHHHhc
Confidence 0000 1111 0010 11234 899999999999999999
Q ss_pred hCCCcEEEEcCCCCCCccceeecCCCCCC
Q psy9704 87 KGMAATFRVTQSQIVKTAAERRLPSKPWI 115 (116)
Q Consensus 87 ~~~g~~i~VG~~~~~~T~A~~~l~~~~ev 115 (116)
+..+.+|.||.. +|.|+|+|++++||
T Consensus 691 ~~~~~~v~vG~~---~s~A~~~l~~~~eV 716 (726)
T PRK14501 691 PETAITVKVGPG---ESRARYRLPSQREV 716 (726)
T ss_pred ccCceEEEECCC---CCcceEeCCCHHHH
Confidence 878889999987 89999999999875
No 11
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=99.49 E-value=1.2e-13 Score=122.09 Aligned_cols=41 Identities=22% Similarity=0.302 Sum_probs=38.2
Q ss_pred ceEEEEcCCCHhhHHHhcCCCCccEEeccCceeecCCCcee
Q psy9704 2 CTSLLISGRNVHNVMEMVGIEGLTYAGNHGLEIIHPDGSRF 42 (116)
Q Consensus 2 ~~vaIVSGR~~~~l~~~l~~~~~~~aG~HG~e~~~~~g~~~ 42 (116)
+.|+|||||++++|++||+..++.++|+||+|++.+++.|.
T Consensus 640 n~VaIVSGR~~~~Le~~fg~~~L~LaAEHG~~~R~~~~~w~ 680 (934)
T PLN03064 640 TTIVVLSGSDRSVLDENFGEFDMWLAAENGMFLRHTKGEWM 680 (934)
T ss_pred CeEEEEeCCCHHHHHHHhCCCCceEEeeCCeEEecCCCcce
Confidence 68999999999999999999999999999999998887764
No 12
>KOG1050|consensus
Probab=99.03 E-value=1.1e-09 Score=95.21 Aligned_cols=109 Identities=20% Similarity=0.213 Sum_probs=78.5
Q ss_pred ceEEEEcCCCHhhHHHhc-CCCCccEEeccCceeecCCCceecCCCcHHH------------------------------
Q psy9704 2 CTSLLISGRNVHNVMEMV-GIEGLTYAGNHGLEIIHPDGSRFVHPIPTEC------------------------------ 50 (116)
Q Consensus 2 ~~vaIVSGR~~~~l~~~l-~~~~~~~aG~HG~e~~~~~g~~~~~~~~~~~------------------------------ 50 (116)
+.|-|+|||+..+++.|+ +.+++.++++||..+|.+++ |...-..-+|
T Consensus 535 n~v~i~s~~~r~~l~~~~~~~~~lgl~aEhG~f~r~~~~-w~~~~~~~~w~~~v~~i~~~~~ert~GS~ie~k~~~l~~h 613 (732)
T KOG1050|consen 535 NIVYIVSGRGRSVLEKWFFGCKNLGLAAEHGYFVRIPGK-WETCVLDLDWKDLVKDIFQYYTERTPGSYIERKETALVWH 613 (732)
T ss_pred CeEEEEEccCchhhhhhccccccceeecccCceeccCCc-eeeecccccHHHHHHHHHHHHHhcCCCceecccCceEEEe
Confidence 678999999999998888 46899999999999998776 5322122222
Q ss_pred ------------HHHHHH--HH-hCC----------------C-----------CCC--CceeEEEEeCCCccHHHHHhh
Q psy9704 51 ------------ASIYIL--RT-AFG----------------L-----------DWT--ERVKIIYAGDDVTDEDAMEAL 86 (116)
Q Consensus 51 ------------a~~~~l--~~-~~g----------------~-----------~~~--~~~~pv~iGDD~TDEdaF~al 86 (116)
|.++.. .. +.+ + .+. .+ +.+++|||.||||+|+.+
T Consensus 614 y~~ad~~~g~~qA~el~~~l~~~~~~~~v~~g~~~Vev~~~gvsk~~~~~~~~~~~~~~~d-f~~c~g~d~tDed~~~~~ 692 (732)
T KOG1050|consen 614 YRNADPEFGELQAKELLEHLESKNEPVEVVRGKHIVEVRPQGVSKGLAAERILSEMVKEPD-FVLCIGDDRTDEDMFEFI 692 (732)
T ss_pred eeccCcchhHHHHHHHHHHhcccCCCeEEEecCceEEEcccccchHHHHHHHHHhcCCCcc-eEEEecCCCChHHHHHHH
Confidence 222211 11 111 0 122 34 899999999999999999
Q ss_pred hCCC--------cEEEEcCCCCCCccceeecCCCCCC
Q psy9704 87 KGMA--------ATFRVTQSQIVKTAAERRLPSKPWI 115 (116)
Q Consensus 87 ~~~g--------~~i~VG~~~~~~T~A~~~l~~~~ev 115 (116)
...- ..+.||.. +|.|+|.+.++.+|
T Consensus 693 ~~~~~~~~~~~~F~~~~g~~---~t~a~~~~~~~~~v 726 (732)
T KOG1050|consen 693 SKAKDPEKVEEIFACTVGQK---PSKAKYFLDDTHEV 726 (732)
T ss_pred hhccCCcccceEEEEEcCCC---CcccccccCChHHH
Confidence 7533 36777884 89999999999876
No 13
>TIGR02471 sucr_syn_bact_C sucrose phosphate synthase, sucrose phosphatase-like domain, bacterial. Sucrose phosphate synthase (SPS) and sucrose phosphate phosphatase (SPP) are the last two enzymes of sucrose biosynthesis. In cyanobacteria and plants, the C-terminal region of most or all versions of SPS has a domain homologous to the known SPP. This domain may serve a binding or regulatory rather than catalytic function. Sequences in this family are bacterial C-terminal regions found in all but two of the putative bacterial sucrose phosphate synthases described by TIGR02472.
Probab=98.36 E-value=1.9e-06 Score=64.62 Aligned_cols=35 Identities=20% Similarity=0.156 Sum_probs=29.4
Q ss_pred ceEEEEcCCCHhhHHHhcCCCCc----cEEeccCceeec
Q psy9704 2 CTSLLISGRNVHNVMEMVGIEGL----TYAGNHGLEIIH 36 (116)
Q Consensus 2 ~~vaIVSGR~~~~l~~~l~~~~~----~~aG~HG~e~~~ 36 (116)
..++|+|||+.+.+.+++...++ +++++||+++..
T Consensus 31 i~~viaTGR~~~~v~~~~~~l~l~~~~~~I~~nGa~i~~ 69 (236)
T TIGR02471 31 VGFGIATGRSVESAKSRYAKLNLPSPDVLIARVGTEIYY 69 (236)
T ss_pred ceEEEEeCCCHHHHHHHHHhCCCCCCCEEEECCCceEEe
Confidence 57899999999999999865543 389999999854
No 14
>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB. The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.
Probab=98.36 E-value=1.6e-06 Score=63.28 Aligned_cols=39 Identities=21% Similarity=0.365 Sum_probs=34.0
Q ss_pred ceEEEEcCCCHhhHHHhcCCCCccEEeccCceeecCCCc
Q psy9704 2 CTSLLISGRNVHNVMEMVGIEGLTYAGNHGLEIIHPDGS 40 (116)
Q Consensus 2 ~~vaIVSGR~~~~l~~~l~~~~~~~aG~HG~e~~~~~g~ 40 (116)
..++|+|||+...+++++...+..++++||++++.+++.
T Consensus 34 ~~~~i~TGR~~~~~~~~~~~~~~~~i~~nGa~i~~~~~~ 72 (204)
T TIGR01484 34 VKVVLVTGRSLAEIKELLKQLPLPLIAENGALIFYPGEI 72 (204)
T ss_pred CEEEEECCCCHHHHHHHHHhCCCCEEECCCcEEEECCEE
Confidence 579999999999999999877789999999999865543
No 15
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=97.82 E-value=9.1e-05 Score=54.03 Aligned_cols=40 Identities=18% Similarity=0.292 Sum_probs=32.9
Q ss_pred ceEEEEcCCCHhhHHHhcCCCC--ccEEeccCceeecCCCce
Q psy9704 2 CTSLLISGRNVHNVMEMVGIEG--LTYAGNHGLEIIHPDGSR 41 (116)
Q Consensus 2 ~~vaIVSGR~~~~l~~~l~~~~--~~~aG~HG~e~~~~~g~~ 41 (116)
..++|.|||+...+.+++...+ .++++++|+-+..+.++.
T Consensus 32 ~~~~i~TGR~~~~~~~~~~~~~~~~~~I~~nGa~i~~~~~~~ 73 (254)
T PF08282_consen 32 IKLVIATGRSYSSIKRLLKELGIDDYFICSNGALIDDPKGKI 73 (254)
T ss_dssp CEEEEECSSTHHHHHHHHHHTTHCSEEEEGGGTEEEETTTEE
T ss_pred eEEEEEccCcccccccccccccchhhhcccccceeeeccccc
Confidence 5789999999999999998554 589999999995555553
No 16
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=97.55 E-value=0.00056 Score=50.50 Aligned_cols=42 Identities=19% Similarity=0.188 Sum_probs=31.7
Q ss_pred eEEEEeCCCccHHHHHhhhCCCcEEEEcCCCC-CCccceeecCCCC
Q psy9704 69 KIIYAGDDVTDEDAMEALKGMAATFRVTQSQI-VKTAAERRLPSKP 113 (116)
Q Consensus 69 ~pv~iGDD~TDEdaF~al~~~g~~i~VG~~~~-~~T~A~~~l~~~~ 113 (116)
..+++||..+|.+||+.. |.+|.||+..+ ....|+|...+..
T Consensus 175 ~~i~~GD~~NDi~m~~~a---g~~vam~Na~~~vk~~a~~v~~~n~ 217 (230)
T PRK01158 175 EVAAIGDSENDLEMFEVA---GFGVAVANADEELKEAADYVTEKSY 217 (230)
T ss_pred HEEEECCchhhHHHHHhc---CceEEecCccHHHHHhcceEecCCC
Confidence 579999999999999976 67899987641 2345777665544
No 17
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=97.46 E-value=0.00064 Score=50.14 Aligned_cols=39 Identities=15% Similarity=0.161 Sum_probs=30.1
Q ss_pred ceEEEEcCCCHhhHHHhcCCCCc--cEEeccCceeecCCCc
Q psy9704 2 CTSLLISGRNVHNVMEMVGIEGL--TYAGNHGLEIIHPDGS 40 (116)
Q Consensus 2 ~~vaIVSGR~~~~l~~~l~~~~~--~~aG~HG~e~~~~~g~ 40 (116)
..++|+|||+...++..+...++ ++++++|+.+..+++.
T Consensus 35 ~~~~~~TGR~~~~~~~~~~~l~~~~~~i~~NGa~i~~~~~~ 75 (215)
T TIGR01487 35 IPVSLVTGNTVPFARALAVLIGTSGPVVAENGGVIFYNKED 75 (215)
T ss_pred CEEEEEcCCcchhHHHHHHHhCCCCcEEEccCcEEEeCCCc
Confidence 57999999999998887654333 5899999998765443
No 18
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=97.36 E-value=0.0014 Score=49.64 Aligned_cols=36 Identities=22% Similarity=0.332 Sum_probs=31.0
Q ss_pred ceEEEEcCCCHhhHHHhcCCCCc--cEEeccCceeecC
Q psy9704 2 CTSLLISGRNVHNVMEMVGIEGL--TYAGNHGLEIIHP 37 (116)
Q Consensus 2 ~~vaIVSGR~~~~l~~~l~~~~~--~~aG~HG~e~~~~ 37 (116)
..++|+|||+...+.+.+...++ +++++-|+.+..+
T Consensus 37 ~~v~iaTGR~~~~~~~~~~~l~~~~~~I~~NGa~i~~~ 74 (264)
T COG0561 37 VKVVLATGRPLPDVLSILEELGLDGPLITFNGALIYNG 74 (264)
T ss_pred CEEEEECCCChHHHHHHHHHcCCCccEEEeCCeEEecC
Confidence 57999999999999999865444 6999999999877
No 19
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=97.23 E-value=0.0022 Score=47.09 Aligned_cols=42 Identities=24% Similarity=0.188 Sum_probs=30.8
Q ss_pred eEEEEeCCCccHHHHHhhhCCCcEEEEcCCC-CCCccceeecCCCC
Q psy9704 69 KIIYAGDDVTDEDAMEALKGMAATFRVTQSQ-IVKTAAERRLPSKP 113 (116)
Q Consensus 69 ~pv~iGDD~TDEdaF~al~~~g~~i~VG~~~-~~~T~A~~~l~~~~ 113 (116)
..++|||..+|.+||+.. |.++.|++.. +....|+|...+..
T Consensus 167 ~~i~~GD~~NDi~m~~~a---g~~vam~Na~~~~k~~A~~vt~~~~ 209 (225)
T TIGR01482 167 ETLVCGDSENDIDLFEVP---GFGVAVANAQPELKEWADYVTESPY 209 (225)
T ss_pred HEEEECCCHhhHHHHHhc---CceEEcCChhHHHHHhcCeecCCCC
Confidence 679999999999999976 6788888653 12345666655443
No 20
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=97.07 E-value=0.0033 Score=47.90 Aligned_cols=39 Identities=18% Similarity=0.296 Sum_probs=30.5
Q ss_pred ceEEEEcCCCHhhHHHhcCCCC--ccEEeccCceeecCCCc
Q psy9704 2 CTSLLISGRNVHNVMEMVGIEG--LTYAGNHGLEIIHPDGS 40 (116)
Q Consensus 2 ~~vaIVSGR~~~~l~~~l~~~~--~~~aG~HG~e~~~~~g~ 40 (116)
..++|.|||+...+.+++...+ .+++++-|+.+..+++.
T Consensus 36 ~~~~iaTGR~~~~~~~~~~~l~~~~~~I~~NGa~I~~~~~~ 76 (272)
T PRK15126 36 ITLTFATGRHVLEMQHILGALSLDAYLITGNGTRVHSLEGE 76 (272)
T ss_pred CEEEEECCCCHHHHHHHHHHcCCCCcEEecCCcEEEcCCCC
Confidence 5799999999999988875433 35789999998755554
No 21
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=97.07 E-value=0.0036 Score=47.42 Aligned_cols=42 Identities=19% Similarity=0.162 Sum_probs=32.0
Q ss_pred eEEEEeCCCccHHHHHhhhCCCcEEEEcCCC-CCCccceeecCCCC
Q psy9704 69 KIIYAGDDVTDEDAMEALKGMAATFRVTQSQ-IVKTAAERRLPSKP 113 (116)
Q Consensus 69 ~pv~iGDD~TDEdaF~al~~~g~~i~VG~~~-~~~T~A~~~l~~~~ 113 (116)
-.++|||..+|.+||+.+ |.+|.+|+.+ +....|+|-..+..
T Consensus 214 ~v~afGD~~NDi~Ml~~a---g~~vAm~NA~~~vK~~A~~vt~~n~ 256 (270)
T PRK10513 214 EVMAIGDQENDIAMIEYA---GVGVAMGNAIPSVKEVAQFVTKSNL 256 (270)
T ss_pred HEEEECCchhhHHHHHhC---CceEEecCccHHHHHhcCeeccCCC
Confidence 679999999999999975 6688888753 23456777766543
No 22
>COG1778 Low specificity phosphatase (HAD superfamily) [General function prediction only]
Probab=97.00 E-value=0.00088 Score=49.13 Aligned_cols=75 Identities=24% Similarity=0.291 Sum_probs=48.2
Q ss_pred ceEEEEcCCCHhhHHHhcCCCCccEEeccCceeecCCCceecCCCcHHH-HHHHHHHHhCCCCCCCceeEEEEeCCCccH
Q psy9704 2 CTSLLISGRNVHNVMEMVGIEGLTYAGNHGLEIIHPDGSRFVHPIPTEC-ASIYILRTAFGLDWTERVKIIYAGDDVTDE 80 (116)
Q Consensus 2 ~~vaIVSGR~~~~l~~~l~~~~~~~aG~HG~e~~~~~g~~~~~~~~~~~-a~~~~l~~~~g~~~~~~~~pv~iGDD~TDE 80 (116)
.++||||||+-.-++++....++.+. . -|. .+.. +.+ .|....++.+ . -..|+|||..|-
T Consensus 52 i~vAIITGr~s~ive~Ra~~LGI~~~--------~-qG~------~dK~~a~~-~L~~~~~l~~--e-~~ayiGDD~~Dl 112 (170)
T COG1778 52 IKVAIITGRDSPIVEKRAKDLGIKHL--------Y-QGI------SDKLAAFE-ELLKKLNLDP--E-EVAYVGDDLVDL 112 (170)
T ss_pred CeEEEEeCCCCHHHHHHHHHcCCcee--------e-ech------HhHHHHHH-HHHHHhCCCH--H-HhhhhcCccccH
Confidence 57999999999999999876665431 1 111 1111 222 2222333322 2 568999999999
Q ss_pred HHHHhhhCCCcEEEEcCC
Q psy9704 81 DAMEALKGMAATFRVTQS 98 (116)
Q Consensus 81 daF~al~~~g~~i~VG~~ 98 (116)
.+|+.+ |+++.|-..
T Consensus 113 pvm~~v---Gls~a~~dA 127 (170)
T COG1778 113 PVMEKV---GLSVAVADA 127 (170)
T ss_pred HHHHHc---CCccccccc
Confidence 999877 777777543
No 23
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=96.96 E-value=0.005 Score=46.41 Aligned_cols=39 Identities=21% Similarity=0.388 Sum_probs=30.9
Q ss_pred ceEEEEcCCCHhhHHHhcCCCC--ccEEeccCceeecCCCc
Q psy9704 2 CTSLLISGRNVHNVMEMVGIEG--LTYAGNHGLEIIHPDGS 40 (116)
Q Consensus 2 ~~vaIVSGR~~~~l~~~l~~~~--~~~aG~HG~e~~~~~g~ 40 (116)
..++|+|||+...+...+...+ .+++++-|+.+...+++
T Consensus 33 ~~~~iaTGR~~~~~~~~~~~~~~~~~~I~~NGa~i~~~~~~ 73 (256)
T TIGR00099 33 IKVVLATGRPYKEVKNILKELGLDTPFITANGAAVIDDQGE 73 (256)
T ss_pred CeEEEEeCCCHHHHHHHHHHcCCCCCEEEcCCcEEECCCCC
Confidence 5799999999999988875433 36899999998765544
No 24
>PF05116 S6PP: Sucrose-6F-phosphate phosphohydrolase; InterPro: IPR006380 This family of sequences represent sucrose phosphate phosphohydrolase (SPP) from plants and cyanobacteria []. SPP is a member of the Class IIB subfamily of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. SPP catalyzes the final step in the biosynthesis of sucrose, a critically important molecule for plants. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.; PDB: 1TJ5_A 2B1Q_A 1TJ4_A 1S2O_A 1U2T_A 2D2V_A 1TJ3_A 1U2S_A 2B1R_A 3GYG_B ....
Probab=96.88 E-value=0.0045 Score=47.37 Aligned_cols=35 Identities=17% Similarity=0.235 Sum_probs=26.5
Q ss_pred ceEEEEcCCCHhhHHHhcCC----CCccEEeccCceeec
Q psy9704 2 CTSLLISGRNVHNVMEMVGI----EGLTYAGNHGLEIIH 36 (116)
Q Consensus 2 ~~vaIVSGR~~~~l~~~l~~----~~~~~aG~HG~e~~~ 36 (116)
..++++|||+++.+.+.+.. .|=+++++.|.++..
T Consensus 36 ~~~v~~TGRs~~~~~~~~~~~~l~~Pd~~I~svGt~I~~ 74 (247)
T PF05116_consen 36 ILFVYVTGRSLESVLRLLREYNLPQPDYIITSVGTEIYY 74 (247)
T ss_dssp EEEEEE-SS-HHHHHHHHHHCT-EE-SEEEETTTTEEEE
T ss_pred ceEEEECCCCHHHHHHHHHhCCCCCCCEEEecCCeEEEE
Confidence 45789999999999998853 345699999999876
No 25
>KOG1050|consensus
Probab=96.51 E-value=0.00043 Score=60.83 Aligned_cols=35 Identities=34% Similarity=0.510 Sum_probs=31.4
Q ss_pred EEEEcCCCHhh----------HHHhcCCCCccEEeccCceeecCC
Q psy9704 4 SLLISGRNVHN----------VMEMVGIEGLTYAGNHGLEIIHPD 38 (116)
Q Consensus 4 vaIVSGR~~~~----------l~~~l~~~~~~~aG~HG~e~~~~~ 38 (116)
-++||||.... ..+++....++++++||.+++.+.
T Consensus 229 ~~~v~~rgr~~~v~~~pigid~~r~v~~~~~~~~~~~~~ei~~~~ 273 (732)
T KOG1050|consen 229 TAGVSGRGRDVSVKALPIGIDVQRFVKLLELPYVGSKGMEIKEPF 273 (732)
T ss_pred cceEEeccceeeeeecccccchHHhhccccchhHHHHHHHHhhhc
Confidence 57899999776 999999999999999999998765
No 26
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=96.41 E-value=0.0095 Score=38.87 Aligned_cols=84 Identities=23% Similarity=0.414 Sum_probs=47.8
Q ss_pred ceEEEEcCCCHhhHHHhcCCCCc-----cEEeccCceeecCCCceecC--C----CcHHHHHHHHHHHhCCCCCCCceeE
Q psy9704 2 CTSLLISGRNVHNVMEMVGIEGL-----TYAGNHGLEIIHPDGSRFVH--P----IPTECASIYILRTAFGLDWTERVKI 70 (116)
Q Consensus 2 ~~vaIVSGR~~~~l~~~l~~~~~-----~~aG~HG~e~~~~~g~~~~~--~----~~~~~a~~~~l~~~~g~~~~~~~~p 70 (116)
+.++|+|||..+.++.++...++ .+.++++.....+....... . .+........+. ..+.+ .. ..
T Consensus 41 ~~i~ivS~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~-~~ 116 (139)
T cd01427 41 IKLALATNKSRREVLELLEELGLDDYFDPVITSNGAAIYYPKEGLFLGGGPFDIGKPNPDKLLAALK-LLGVD--PE-EV 116 (139)
T ss_pred CeEEEEeCchHHHHHHHHHHcCCchhhhheeccchhhhhcccccccccccccccCCCCHHHHHHHHH-HcCCC--hh-hE
Confidence 57999999999999998865443 35555555443222111000 0 011101222222 22222 33 68
Q ss_pred EEEeCCCccHHHHHhhhCC
Q psy9704 71 IYAGDDVTDEDAMEALKGM 89 (116)
Q Consensus 71 v~iGDD~TDEdaF~al~~~ 89 (116)
+|+||..+|..+++.+...
T Consensus 117 ~~igD~~~d~~~~~~~g~~ 135 (139)
T cd01427 117 LMVGDSLNDIEMAKAAGGL 135 (139)
T ss_pred EEeCCCHHHHHHHHHcCCc
Confidence 9999999999999876433
No 27
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=96.16 E-value=0.062 Score=40.46 Aligned_cols=37 Identities=14% Similarity=0.160 Sum_probs=29.4
Q ss_pred ceEEEEcCCCHhhHHHhcCCCCc--cEEeccCceeecCC
Q psy9704 2 CTSLLISGRNVHNVMEMVGIEGL--TYAGNHGLEIIHPD 38 (116)
Q Consensus 2 ~~vaIVSGR~~~~l~~~l~~~~~--~~aG~HG~e~~~~~ 38 (116)
.+++|+|||+...+..++...++ +++.+-|+.+..+.
T Consensus 32 ~~~vi~TgR~~~~~~~~~~~lg~~~~~I~~NGa~I~~~~ 70 (225)
T TIGR02461 32 FPIVFVSSKTRAEQEYYREELGVEPPFIVENGGAIFIPR 70 (225)
T ss_pred CEEEEEeCCCHHHHHHHHHHcCCCCcEEEcCCcEEEecC
Confidence 57899999999998887754443 68999999987653
No 28
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=95.81 E-value=0.12 Score=38.95 Aligned_cols=36 Identities=19% Similarity=0.182 Sum_probs=27.6
Q ss_pred ceEEEEcCCCHhhHHHh---cCCC-CccEEeccCceeecC
Q psy9704 2 CTSLLISGRNVHNVMEM---VGIE-GLTYAGNHGLEIIHP 37 (116)
Q Consensus 2 ~~vaIVSGR~~~~l~~~---l~~~-~~~~aG~HG~e~~~~ 37 (116)
..++++|||+...+.++ ++.. +-+++++.|+.+..+
T Consensus 38 i~fv~aTGR~~~~~~~~~~~~~~~~p~~~I~~NGa~I~~~ 77 (249)
T TIGR01485 38 SLLVYSTGRSPHSYKELQKQKPLLTPDIWVTSVGSEIYYG 77 (249)
T ss_pred ceEEEEcCCCHHHHHHHHhcCCCCCCCEEEEcCCceEEeC
Confidence 37899999999999988 4543 223777999998754
No 29
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=94.70 E-value=0.11 Score=36.68 Aligned_cols=91 Identities=22% Similarity=0.256 Sum_probs=54.8
Q ss_pred ceEEEEcCCCHhhHHHhcCCCCccEEeccCceeecCCCceecCCCcHHHHHHHHHHHhCCCCCCCceeEEEEeCCCccHH
Q psy9704 2 CTSLLISGRNVHNVMEMVGIEGLTYAGNHGLEIIHPDGSRFVHPIPTECASIYILRTAFGLDWTERVKIIYAGDDVTDED 81 (116)
Q Consensus 2 ~~vaIVSGR~~~~l~~~l~~~~~~~aG~HG~e~~~~~g~~~~~~~~~~~a~~~~l~~~~g~~~~~~~~pv~iGDD~TDEd 81 (116)
+.++|+|+++...+++.+...++.-. +. +. .+-+. .....+. ..+++ .. ..+|+||..+|..
T Consensus 45 ~~i~IvTn~~~~~~~~~l~~~gi~~~------~~---~~---~~k~~--~~~~~~~-~~~~~--~~-~~~~vGDs~~D~~ 106 (154)
T TIGR01670 45 IEVAIITGRKAKLVEDRCKTLGITHL------YQ---GQ---SNKLI--AFSDILE-KLALA--PE-NVAYIGDDLIDWP 106 (154)
T ss_pred CEEEEEECCCCHHHHHHHHHcCCCEE------Ee---cc---cchHH--HHHHHHH-HcCCC--HH-HEEEECCCHHHHH
Confidence 57999999999888887755444311 00 10 11111 2223333 23322 23 6799999999999
Q ss_pred HHHhhhCCCcEEEEcCCC-CCCccceeecCCCC
Q psy9704 82 AMEALKGMAATFRVTQSQ-IVKTAAERRLPSKP 113 (116)
Q Consensus 82 aF~al~~~g~~i~VG~~~-~~~T~A~~~l~~~~ 113 (116)
+++.. |.++.|.... .....|+|.+.++.
T Consensus 107 ~~~~a---g~~~~v~~~~~~~~~~a~~i~~~~~ 136 (154)
T TIGR01670 107 VMEKV---GLSVAVADAHPLLIPRADYVTRIAG 136 (154)
T ss_pred HHHHC---CCeEecCCcCHHHHHhCCEEecCCC
Confidence 97766 5567776432 12456788888775
No 30
>TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit. Members of this protein family are the alpha subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases.
Probab=94.63 E-value=0.096 Score=38.17 Aligned_cols=90 Identities=16% Similarity=0.202 Sum_probs=54.7
Q ss_pred ceEEEEcCCCHhhHHHhcCCCCccEEeccCceeecCCCceecCCCcHHHHHHHHHHHhCCCCCCCceeEEEEeCCCccHH
Q psy9704 2 CTSLLISGRNVHNVMEMVGIEGLTYAGNHGLEIIHPDGSRFVHPIPTECASIYILRTAFGLDWTERVKIIYAGDDVTDED 81 (116)
Q Consensus 2 ~~vaIVSGR~~~~l~~~l~~~~~~~aG~HG~e~~~~~g~~~~~~~~~~~a~~~~l~~~~g~~~~~~~~pv~iGDD~TDEd 81 (116)
.+++|+|+.+...+++++...++...=.+ . .+-+. ..+..+. ..++ ... -.+||||+.+|..
T Consensus 51 i~laIiT~k~~~~~~~~l~~lgi~~~f~~-~-----------kpkp~--~~~~~~~-~l~~--~~~-ev~~iGD~~nDi~ 112 (169)
T TIGR02726 51 IDVAIITSKKSGAVRHRAEELKIKRFHEG-I-----------KKKTE--PYAQMLE-EMNI--SDA-EVCYVGDDLVDLS 112 (169)
T ss_pred CEEEEEECCCcHHHHHHHHHCCCcEEEec-C-----------CCCHH--HHHHHHH-HcCc--CHH-HEEEECCCHHHHH
Confidence 58999999999999999876665421111 0 11111 2222332 2332 223 5799999999999
Q ss_pred HHHhhhCCCcEEEEcCCC-CCCccceeecCCC
Q psy9704 82 AMEALKGMAATFRVTQSQ-IVKTAAERRLPSK 112 (116)
Q Consensus 82 aF~al~~~g~~i~VG~~~-~~~T~A~~~l~~~ 112 (116)
+|+.. |.++-+.... .....|+|-..++
T Consensus 113 ~~~~a---g~~~am~nA~~~lk~~A~~I~~~~ 141 (169)
T TIGR02726 113 MMKRV---GLAVAVGDAVADVKEAAAYVTTAR 141 (169)
T ss_pred HHHHC---CCeEECcCchHHHHHhCCEEcCCC
Confidence 99875 5677776542 1235566765543
No 31
>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional
Probab=93.99 E-value=0.078 Score=38.58 Aligned_cols=88 Identities=22% Similarity=0.256 Sum_probs=51.6
Q ss_pred ceEEEEcCCCHhhHHHhcCCCCccEEeccCceeecCCCceecCCCcHHHHHHHHHHHhCCCCCCCceeEEEEeCCCccHH
Q psy9704 2 CTSLLISGRNVHNVMEMVGIEGLTYAGNHGLEIIHPDGSRFVHPIPTECASIYILRTAFGLDWTERVKIIYAGDDVTDED 81 (116)
Q Consensus 2 ~~vaIVSGR~~~~l~~~l~~~~~~~aG~HG~e~~~~~g~~~~~~~~~~~a~~~~l~~~~g~~~~~~~~pv~iGDD~TDEd 81 (116)
+.++|+|||+...+.+++...++...= +|. ... +. .....++ ..|+. .. -.+||||+.+|-.
T Consensus 65 i~v~I~T~~~~~~v~~~l~~lgl~~~f-~g~-------~~k----~~--~l~~~~~-~~gl~--~~-ev~~VGDs~~D~~ 126 (183)
T PRK09484 65 IEVAIITGRKSKLVEDRMTTLGITHLY-QGQ-------SNK----LI--AFSDLLE-KLAIA--PE-QVAYIGDDLIDWP 126 (183)
T ss_pred CEEEEEeCCCcHHHHHHHHHcCCceee-cCC-------CcH----HH--HHHHHHH-HhCCC--HH-HEEEECCCHHHHH
Confidence 579999999999888887655543211 111 100 11 2223333 23432 22 5799999999999
Q ss_pred HHHhhhCCCcEEEEcCCCCC-CccceeecC
Q psy9704 82 AMEALKGMAATFRVTQSQIV-KTAAERRLP 110 (116)
Q Consensus 82 aF~al~~~g~~i~VG~~~~~-~T~A~~~l~ 110 (116)
+++.+ |.++.|+...+. ...|.|.+.
T Consensus 127 ~a~~a---G~~~~v~~~~~~~~~~a~~v~~ 153 (183)
T PRK09484 127 VMEKV---GLSVAVADAHPLLLPRADYVTR 153 (183)
T ss_pred HHHHC---CCeEecCChhHHHHHhCCEEec
Confidence 99886 455667643211 124566665
No 32
>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family. This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta
Probab=93.65 E-value=0.091 Score=39.73 Aligned_cols=38 Identities=16% Similarity=0.172 Sum_probs=31.2
Q ss_pred ceEEEEcCCCHhhHHHhcCCCC--ccEEeccCceeecCCC
Q psy9704 2 CTSLLISGRNVHNVMEMVGIEG--LTYAGNHGLEIIHPDG 39 (116)
Q Consensus 2 ~~vaIVSGR~~~~l~~~l~~~~--~~~aG~HG~e~~~~~g 39 (116)
+.++|+|||+...+..++...+ -++++++|+.+..+++
T Consensus 33 ~~~~~~TgR~~~~~~~~~~~~~~~~~~I~~NGa~i~~~~~ 72 (256)
T TIGR01486 33 IPVIPCTSKTAAEVEYLRKELGLEDPFIVENGGAIYGPRG 72 (256)
T ss_pred CeEEEEcCCCHHHHHHHHHHcCCCCcEEEcCCeEEEeCCC
Confidence 6799999999999988886544 3699999999876554
No 33
>PLN02382 probable sucrose-phosphatase
Probab=92.66 E-value=1.6 Score=36.08 Aligned_cols=28 Identities=18% Similarity=0.257 Sum_probs=23.4
Q ss_pred eEEEEeCCCccHHHHHhhhCCC-cEEEEcCCC
Q psy9704 69 KIIYAGDDVTDEDAMEALKGMA-ATFRVTQSQ 99 (116)
Q Consensus 69 ~pv~iGDD~TDEdaF~al~~~g-~~i~VG~~~ 99 (116)
..+++||..+|.+||+.. + .+|.||+..
T Consensus 196 ~~iafGDs~NDleMl~~a---g~~gvam~NA~ 224 (413)
T PLN02382 196 NTLVCGDSGNDAELFSVP---DVYGVMVSNAQ 224 (413)
T ss_pred cEEEEeCCHHHHHHHhcC---CCCEEEEcCCc
Confidence 569999999999999885 5 588888753
No 34
>COG4030 Uncharacterized protein conserved in archaea [Function unknown]
Probab=92.05 E-value=0.24 Score=38.87 Aligned_cols=27 Identities=26% Similarity=0.468 Sum_probs=23.6
Q ss_pred eEEEEeCCCccHHHHHhhhCCCc-EEEE
Q psy9704 69 KIIYAGDDVTDEDAMEALKGMAA-TFRV 95 (116)
Q Consensus 69 ~pv~iGDD~TDEdaF~al~~~g~-~i~V 95 (116)
.++++||..||-++|++++++|+ .|.-
T Consensus 208 sa~~VGDSItDv~ml~~~rgrGglAvaF 235 (315)
T COG4030 208 SAVVVGDSITDVKMLEAARGRGGLAVAF 235 (315)
T ss_pred ceeEecCcccchHHHHHhhccCceEEEe
Confidence 46999999999999999999886 6655
No 35
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=91.41 E-value=0.73 Score=33.57 Aligned_cols=103 Identities=17% Similarity=0.141 Sum_probs=51.4
Q ss_pred ceEEEEcCCCHhhHHHhcCCCCcc-EEec-----cCceeecCCCceecCCCcHHHHHHHHHHHhCCCCCCCceeEEEEeC
Q psy9704 2 CTSLLISGRNVHNVMEMVGIEGLT-YAGN-----HGLEIIHPDGSRFVHPIPTECASIYILRTAFGLDWTERVKIIYAGD 75 (116)
Q Consensus 2 ~~vaIVSGR~~~~l~~~l~~~~~~-~aG~-----HG~e~~~~~g~~~~~~~~~~~a~~~~l~~~~g~~~~~~~~pv~iGD 75 (116)
.+++|||+-....++.++...++. +.++ +|...-...+.........+ ..+..++ ..+++ .. ..+|+||
T Consensus 102 ~~~~IvS~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~-~~~~~~~-~~~~~--~~-~~i~iGD 176 (219)
T TIGR00338 102 YKVAVISGGFDLFAEHVKDKLGLDAAFANRLEVEDGKLTGLVEGPIVDASYKGK-TLLILLR-KEGIS--PE-NTVAVGD 176 (219)
T ss_pred CEEEEECCCcHHHHHHHHHHcCCCceEeeEEEEECCEEEEEecCcccCCcccHH-HHHHHHH-HcCCC--HH-HEEEEEC
Confidence 579999998888777766543332 2221 12110000111100000111 2222233 23332 23 5799999
Q ss_pred CCccHHHHHhhhCCCcEEEEcCCCCCCccceeecCCC
Q psy9704 76 DVTDEDAMEALKGMAATFRVTQSQIVKTAAERRLPSK 112 (116)
Q Consensus 76 D~TDEdaF~al~~~g~~i~VG~~~~~~T~A~~~l~~~ 112 (116)
..+|-.+.+.+ |.+|-++..+.....|+|.+.+.
T Consensus 177 s~~Di~aa~~a---g~~i~~~~~~~~~~~a~~~i~~~ 210 (219)
T TIGR00338 177 GANDLSMIKAA---GLGIAFNAKPKLQQKADICINKK 210 (219)
T ss_pred CHHHHHHHHhC---CCeEEeCCCHHHHHhchhccCCC
Confidence 99996665544 66666665432335677777654
No 36
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=91.06 E-value=0.34 Score=35.55 Aligned_cols=36 Identities=17% Similarity=0.200 Sum_probs=29.7
Q ss_pred ceEEEEcCCCHhhHHHhcCCCC---ccEEeccCceeecC
Q psy9704 2 CTSLLISGRNVHNVMEMVGIEG---LTYAGNHGLEIIHP 37 (116)
Q Consensus 2 ~~vaIVSGR~~~~l~~~l~~~~---~~~aG~HG~e~~~~ 37 (116)
+.++|+|||+...++.++...+ .+++++.|+.+..+
T Consensus 33 i~~~i~TgR~~~~~~~~~~~l~~~~~~~I~~NGa~i~~~ 71 (221)
T TIGR02463 33 IPVILCTSKTAAEVEYLQKALGLTGDPYIAENGAAIHLE 71 (221)
T ss_pred CeEEEEcCCCHHHHHHHHHHcCCCCCcEEEeCCcEEEcC
Confidence 5799999999999888876443 46999999998764
No 37
>PRK10976 putative hydrolase; Provisional
Probab=90.87 E-value=0.45 Score=35.85 Aligned_cols=39 Identities=15% Similarity=0.192 Sum_probs=30.5
Q ss_pred ceEEEEcCCCHhhHHHhcCCCC--ccEEeccCceeecCCCc
Q psy9704 2 CTSLLISGRNVHNVMEMVGIEG--LTYAGNHGLEIIHPDGS 40 (116)
Q Consensus 2 ~~vaIVSGR~~~~l~~~l~~~~--~~~aG~HG~e~~~~~g~ 40 (116)
..++|.|||+...+...+...+ .+++++.|+.+..++++
T Consensus 36 ~~~~iaTGR~~~~~~~~~~~l~~~~~~I~~NGa~i~~~~~~ 76 (266)
T PRK10976 36 IHFVFATGRHHVDVGQIRDNLEIKSYMITSNGARVHDTDGN 76 (266)
T ss_pred CEEEEEcCCChHHHHHHHHhcCCCCeEEEcCCcEEECCCCC
Confidence 5799999999999887775443 35799999998755554
No 38
>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family. This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta
Probab=90.32 E-value=0.56 Score=35.39 Aligned_cols=28 Identities=21% Similarity=0.285 Sum_probs=24.3
Q ss_pred eEEEEeCCCccHHHHHhhhCCCcEEEEcCCC
Q psy9704 69 KIIYAGDDVTDEDAMEALKGMAATFRVTQSQ 99 (116)
Q Consensus 69 ~pv~iGDD~TDEdaF~al~~~g~~i~VG~~~ 99 (116)
..+++||..+|.+||+.+ |.+|.+++.+
T Consensus 196 ~~~a~GD~~ND~~Ml~~a---g~~vam~Na~ 223 (256)
T TIGR01486 196 KVVGLGDSPNDLPLLEVV---DLAVVVPGPN 223 (256)
T ss_pred eEEEEcCCHhhHHHHHHC---CEEEEeCCCC
Confidence 689999999999999975 7789998763
No 39
>PRK11133 serB phosphoserine phosphatase; Provisional
Probab=90.23 E-value=0.81 Score=36.58 Aligned_cols=101 Identities=15% Similarity=0.075 Sum_probs=54.4
Q ss_pred ceEEEEcCCCHhhHHHhcCCCCccEEeccCceeecCCCcee----c---CCCcHHHHHHHHHHHhCCCCCCCceeEEEEe
Q psy9704 2 CTSLLISGRNVHNVMEMVGIEGLTYAGNHGLEIIHPDGSRF----V---HPIPTECASIYILRTAFGLDWTERVKIIYAG 74 (116)
Q Consensus 2 ~~vaIVSGR~~~~l~~~l~~~~~~~aG~HG~e~~~~~g~~~----~---~~~~~~~a~~~~l~~~~g~~~~~~~~pv~iG 74 (116)
.+++|+||-.....+.++...++..+-.+-+++. +|... . ......-..+..++ ..|++ .. -.+++|
T Consensus 198 ~~~aIvSgg~~~~~~~l~~~Lgld~~~an~lei~--dg~ltg~v~g~iv~~k~K~~~L~~la~-~lgi~--~~-qtIaVG 271 (322)
T PRK11133 198 WKVAIASGGFTYFADYLRDKLRLDAAVANELEIM--DGKLTGNVLGDIVDAQYKADTLTRLAQ-EYEIP--LA-QTVAIG 271 (322)
T ss_pred CEEEEEECCcchhHHHHHHHcCCCeEEEeEEEEE--CCEEEeEecCccCCcccHHHHHHHHHH-HcCCC--hh-hEEEEE
Confidence 5799999988655555544444433323444442 22210 0 00111101222222 34432 23 579999
Q ss_pred CCCccHHHHHhhhCCCcEEEEcCCCCCCccceeecCC
Q psy9704 75 DDVTDEDAMEALKGMAATFRVTQSQIVKTAAERRLPS 111 (116)
Q Consensus 75 DD~TDEdaF~al~~~g~~i~VG~~~~~~T~A~~~l~~ 111 (116)
|..+|-.|+++. |.+|-+-..|.....|++.+..
T Consensus 272 Dg~NDl~m~~~A---GlgiA~nAkp~Vk~~Ad~~i~~ 305 (322)
T PRK11133 272 DGANDLPMIKAA---GLGIAYHAKPKVNEQAQVTIRH 305 (322)
T ss_pred CCHHHHHHHHHC---CCeEEeCCCHHHHhhCCEEecC
Confidence 999999998876 5566664444344577777764
No 40
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=90.12 E-value=2.2 Score=30.24 Aligned_cols=90 Identities=16% Similarity=0.111 Sum_probs=47.1
Q ss_pred ceEEEEcCCCHhhHHHhcCCCCccEEeccCceee-----cCCCceecCCCcHHHHHHHHHHHhCCCCCCCceeEEEEeCC
Q psy9704 2 CTSLLISGRNVHNVMEMVGIEGLTYAGNHGLEII-----HPDGSRFVHPIPTECASIYILRTAFGLDWTERVKIIYAGDD 76 (116)
Q Consensus 2 ~~vaIVSGR~~~~l~~~l~~~~~~~aG~HG~e~~-----~~~g~~~~~~~~~~~a~~~~l~~~~g~~~~~~~~pv~iGDD 76 (116)
.+++|||+.....++.++...++...=.+-+... .|++.....+....-+.+..++ ..+++ .. ..+|+||.
T Consensus 97 ~~~~IvS~~~~~~~~~~l~~~g~~~~~~~~~~~~~~g~~~p~~~~~~~~~~k~~~~~~~~~-~~~~~--~~-~~i~iGDs 172 (201)
T TIGR01491 97 LKTAIVSGGIMCLAKKVAEKLNPDYVYSNELVFDEKGFIQPDGIVRVTFDNKGEAVERLKR-ELNPS--LT-ETVAVGDS 172 (201)
T ss_pred CEEEEEeCCcHHHHHHHHHHhCCCeEEEEEEEEcCCCeEecceeeEEccccHHHHHHHHHH-HhCCC--HH-HEEEEcCC
Confidence 5899999999888888875444322111111111 1221110011111002222222 23332 23 57999999
Q ss_pred CccHHHHHhhhCCCcEEEEcCC
Q psy9704 77 VTDEDAMEALKGMAATFRVTQS 98 (116)
Q Consensus 77 ~TDEdaF~al~~~g~~i~VG~~ 98 (116)
.+|-.+++.+ |..+.++..
T Consensus 173 ~~D~~~a~~a---g~~~a~~~~ 191 (201)
T TIGR01491 173 KNDLPMFEVA---DISISLGDE 191 (201)
T ss_pred HhHHHHHHhc---CCeEEECCC
Confidence 9997777765 667788654
No 41
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=89.83 E-value=0.27 Score=36.93 Aligned_cols=43 Identities=19% Similarity=0.255 Sum_probs=31.2
Q ss_pred eEEEEeCCCccHHHHHhhhCCCcEEEEcCCC-CCCccceeecCCCCC
Q psy9704 69 KIIYAGDDVTDEDAMEALKGMAATFRVTQSQ-IVKTAAERRLPSKPW 114 (116)
Q Consensus 69 ~pv~iGDD~TDEdaF~al~~~g~~i~VG~~~-~~~T~A~~~l~~~~e 114 (116)
-.++|||..+|-.||+.. |.+|.+|..+ +....|+|..++..+
T Consensus 217 e~i~~GD~~NDi~m~~~a---g~~vamgna~~~lk~~Ad~v~~~n~~ 260 (272)
T PRK10530 217 NVVAFGDNFNDISMLEAA---GLGVAMGNADDAVKARADLVIGDNTT 260 (272)
T ss_pred HeEEeCCChhhHHHHHhc---CceEEecCchHHHHHhCCEEEecCCC
Confidence 579999999999999987 3577787653 123467787766543
No 42
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=89.35 E-value=3.2 Score=27.83 Aligned_cols=79 Identities=19% Similarity=0.264 Sum_probs=42.7
Q ss_pred ceEEEEcCCC--------HhhHHHhcCCCCccEEeccCceeecCCCceecCCCcHHHHHHHHHHHhCCCCCCCceeEEEE
Q psy9704 2 CTSLLISGRN--------VHNVMEMVGIEGLTYAGNHGLEIIHPDGSRFVHPIPTECASIYILRTAFGLDWTERVKIIYA 73 (116)
Q Consensus 2 ~~vaIVSGR~--------~~~l~~~l~~~~~~~aG~HG~e~~~~~g~~~~~~~~~~~a~~~~l~~~~g~~~~~~~~pv~i 73 (116)
+.++|+|+++ .+.+++++...++..-... ... + ...|.+. ..++.++. .+ ..... ..+||
T Consensus 42 ~~l~i~Sn~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---~~~--~--~~KP~~~--~~~~~~~~-~~-~~~~~-~~v~I 109 (132)
T TIGR01662 42 YKVVIVTNQSGIGRGKFSSGRVARRLEELGVPIDVLY---ACP--H--CRKPKPG--MFLEALKR-FN-EIDPE-ESVYV 109 (132)
T ss_pred CEEEEEECCccccccHHHHHHHHHHHHHCCCCEEEEE---ECC--C--CCCCChH--HHHHHHHH-cC-CCChh-heEEE
Confidence 6899999999 6667766654443311111 100 1 1122222 23334442 21 12333 68999
Q ss_pred eC-CCccHHHHHhhhCCCc-EEEE
Q psy9704 74 GD-DVTDEDAMEALKGMAA-TFRV 95 (116)
Q Consensus 74 GD-D~TDEdaF~al~~~g~-~i~V 95 (116)
|| ..+| +.+.+..|+ +|.|
T Consensus 110 GD~~~~D---i~~A~~~Gi~~i~~ 130 (132)
T TIGR01662 110 GDQDLTD---LQAAKRAGLAFILV 130 (132)
T ss_pred cCCCccc---HHHHHHCCCeEEEe
Confidence 99 6777 666667777 7765
No 43
>PRK13222 phosphoglycolate phosphatase; Provisional
Probab=88.48 E-value=1.7 Score=31.54 Aligned_cols=100 Identities=14% Similarity=0.198 Sum_probs=53.0
Q ss_pred ceEEEEcCCCHhhHHHhcCCCCcc--EEeccCceeecCCCceecCCCcHHHHHHHHHHHhCCCCCCCceeEEEEeCCCcc
Q psy9704 2 CTSLLISGRNVHNVMEMVGIEGLT--YAGNHGLEIIHPDGSRFVHPIPTECASIYILRTAFGLDWTERVKIIYAGDDVTD 79 (116)
Q Consensus 2 ~~vaIVSGR~~~~l~~~l~~~~~~--~aG~HG~e~~~~~g~~~~~~~~~~~a~~~~l~~~~g~~~~~~~~pv~iGDD~TD 79 (116)
+.++|+|+.....+++++...++. +....+.+ ......+.+. +.+..++ ..++ ... .++||||..+|
T Consensus 110 ~~~~i~S~~~~~~~~~~l~~~~l~~~f~~~~~~~-----~~~~~kp~~~--~~~~~~~-~~~~--~~~-~~i~igD~~~D 178 (226)
T PRK13222 110 YPLAVVTNKPTPFVAPLLEALGIADYFSVVIGGD-----SLPNKKPDPA--PLLLACE-KLGL--DPE-EMLFVGDSRND 178 (226)
T ss_pred CeEEEEeCCCHHHHHHHHHHcCCccCccEEEcCC-----CCCCCCcChH--HHHHHHH-HcCC--Chh-heEEECCCHHH
Confidence 579999999999888887543331 11111111 0001111111 2223333 2332 233 68999999888
Q ss_pred HHHHHhhhCCCc-EEEEcCCC----C-CCccceeecCCCCCC
Q psy9704 80 EDAMEALKGMAA-TFRVTQSQ----I-VKTAAERRLPSKPWI 115 (116)
Q Consensus 80 EdaF~al~~~g~-~i~VG~~~----~-~~T~A~~~l~~~~ev 115 (116)
-.+.+.+ |+ +|.|..+. + ....+.|.+.++.++
T Consensus 179 i~~a~~~---g~~~i~v~~g~~~~~~~~~~~~~~~i~~~~~l 217 (226)
T PRK13222 179 IQAARAA---GCPSVGVTYGYNYGEPIALSEPDVVIDHFAEL 217 (226)
T ss_pred HHHHHHC---CCcEEEECcCCCCccchhhcCCCEEECCHHHH
Confidence 7776665 55 66664221 0 112466888777654
No 44
>PLN02954 phosphoserine phosphatase
Probab=88.43 E-value=3.2 Score=30.21 Aligned_cols=107 Identities=18% Similarity=0.135 Sum_probs=51.3
Q ss_pred ceEEEEcCCCHhhHHHhcCCCCc---cEEec------cCceeecCCCceecCCCcHHHHHHHHHHHhCCCCCCCceeEEE
Q psy9704 2 CTSLLISGRNVHNVMEMVGIEGL---TYAGN------HGLEIIHPDGSRFVHPIPTECASIYILRTAFGLDWTERVKIIY 72 (116)
Q Consensus 2 ~~vaIVSGR~~~~l~~~l~~~~~---~~aG~------HG~e~~~~~g~~~~~~~~~~~a~~~~l~~~~g~~~~~~~~pv~ 72 (116)
.+++|||+.....++.++...++ .+.++ .|.-.................+....++ ..+. . ..+|
T Consensus 101 ~~~~IvS~~~~~~i~~~l~~~gi~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~K~~~i~~~~~-~~~~----~-~~i~ 174 (224)
T PLN02954 101 TDVYLVSGGFRQMIAPVAAILGIPPENIFANQILFGDSGEYAGFDENEPTSRSGGKAEAVQHIKK-KHGY----K-TMVM 174 (224)
T ss_pred CEEEEECCCcHHHHHHHHHHhCCChhhEEEeEEEEcCCCcEECccCCCcccCCccHHHHHHHHHH-HcCC----C-ceEE
Confidence 57999999999988887755443 23332 2222111000000000011112222222 2331 2 5799
Q ss_pred EeCCCccHHHHHhhhCCCcEEEEcCCC---CCCccceeecCCCCCC
Q psy9704 73 AGDDVTDEDAMEALKGMAATFRVTQSQ---IVKTAAERRLPSKPWI 115 (116)
Q Consensus 73 iGDD~TDEdaF~al~~~g~~i~VG~~~---~~~T~A~~~l~~~~ev 115 (116)
+||..+|-.+ +........+..|... .....|.|.+.++.++
T Consensus 175 iGDs~~Di~a-a~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~el 219 (224)
T PLN02954 175 IGDGATDLEA-RKPGGADLFIGYGGVQVREAVAAKADWFVTDFQDL 219 (224)
T ss_pred EeCCHHHHHh-hhcCCCCEEEecCCCccCHHHHhcCCEEECCHHHH
Confidence 9999999777 3222222233334211 0112477888777654
No 45
>PRK10976 putative hydrolase; Provisional
Probab=88.23 E-value=0.39 Score=36.23 Aligned_cols=28 Identities=14% Similarity=0.234 Sum_probs=24.0
Q ss_pred eEEEEeCCCccHHHHHhhhCCCcEEEEcCCC
Q psy9704 69 KIIYAGDDVTDEDAMEALKGMAATFRVTQSQ 99 (116)
Q Consensus 69 ~pv~iGDD~TDEdaF~al~~~g~~i~VG~~~ 99 (116)
-.++|||..+|-+||+.. |.+|.+|+..
T Consensus 208 ~viafGD~~NDi~Ml~~a---g~~vAm~NA~ 235 (266)
T PRK10976 208 DCIAFGDGMNDAEMLSMA---GKGCIMGNAH 235 (266)
T ss_pred HeEEEcCCcccHHHHHHc---CCCeeecCCc
Confidence 579999999999999986 6688888763
No 46
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=87.11 E-value=0.78 Score=35.00 Aligned_cols=36 Identities=17% Similarity=0.253 Sum_probs=29.0
Q ss_pred ceEEEEcCCCHhhHHHhcCCCC---ccEEeccCceeecC
Q psy9704 2 CTSLLISGRNVHNVMEMVGIEG---LTYAGNHGLEIIHP 37 (116)
Q Consensus 2 ~~vaIVSGR~~~~l~~~l~~~~---~~~aG~HG~e~~~~ 37 (116)
+.++|.|||+...+...+...+ .+++++-|+.+..+
T Consensus 41 i~~viaTGR~~~~i~~~~~~l~~~~~~~I~~NGa~I~~~ 79 (271)
T PRK03669 41 VPVILCSSKTAAEMLPLQQTLGLQGLPLIAENGAVIQLD 79 (271)
T ss_pred CeEEEEcCCCHHHHHHHHHHhCCCCCcEEEeCCCEEEec
Confidence 5799999999999887765433 46999999998754
No 47
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=86.08 E-value=5.6 Score=28.75 Aligned_cols=97 Identities=15% Similarity=0.213 Sum_probs=52.1
Q ss_pred ceEEEEcCCCHhhHHHhcCCCCcc-----EEeccCceeecCCCceecCCCcHHHHHHHHHHHhCCCCCCCceeEEEEeCC
Q psy9704 2 CTSLLISGRNVHNVMEMVGIEGLT-----YAGNHGLEIIHPDGSRFVHPIPTECASIYILRTAFGLDWTERVKIIYAGDD 76 (116)
Q Consensus 2 ~~vaIVSGR~~~~l~~~l~~~~~~-----~aG~HG~e~~~~~g~~~~~~~~~~~a~~~~l~~~~g~~~~~~~~pv~iGDD 76 (116)
.+++|+|+.+...++..+...++. ++++. ..+ ...|.++ .....++ ..|++ .. -.+||||.
T Consensus 111 ~~~~i~Tn~~~~~~~~~l~~~~l~~~f~~i~~~~------~~~--~~KP~~~--~~~~~~~-~~~~~--~~-~~~~igDs 176 (221)
T TIGR02253 111 YRLGIITDGLPVKQWEKLERLGVRDFFDAVITSE------EEG--VEKPHPK--IFYAALK-RLGVK--PE-EAVMVGDR 176 (221)
T ss_pred CEEEEEeCCchHHHHHHHHhCChHHhccEEEEec------cCC--CCCCCHH--HHHHHHH-HcCCC--hh-hEEEECCC
Confidence 579999999887777666443321 11110 011 1122222 2223333 23432 23 57999999
Q ss_pred C-ccHHHHHhhhCCCc-EEEEcCCCCC------CccceeecCCCCCC
Q psy9704 77 V-TDEDAMEALKGMAA-TFRVTQSQIV------KTAAERRLPSKPWI 115 (116)
Q Consensus 77 ~-TDEdaF~al~~~g~-~i~VG~~~~~------~T~A~~~l~~~~ev 115 (116)
. +| +.+.+..|+ +|.|..+... ...+.|.+.++.++
T Consensus 177 ~~~d---i~~A~~aG~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~el 220 (221)
T TIGR02253 177 LDKD---IKGAKNLGMKTVWINQGKSSKMEDDVYPYPDYEISSLREL 220 (221)
T ss_pred hHHH---HHHHHHCCCEEEEECCCCCcccccccccCCCeeeCcHHhh
Confidence 7 77 455556677 8888654210 12356778777664
No 48
>PRK11587 putative phosphatase; Provisional
Probab=86.03 E-value=4.1 Score=29.80 Aligned_cols=44 Identities=9% Similarity=-0.015 Sum_probs=30.3
Q ss_pred eEEEEeCCCccHHHHHhhhCCCc-EEEEcCCC--CCCccceeecCCCCCC
Q psy9704 69 KIIYAGDDVTDEDAMEALKGMAA-TFRVTQSQ--IVKTAAERRLPSKPWI 115 (116)
Q Consensus 69 ~pv~iGDD~TDEdaF~al~~~g~-~i~VG~~~--~~~T~A~~~l~~~~ev 115 (116)
..+||||..+| +++....|. +|.|..+. .....+.+.+.++.++
T Consensus 157 ~~l~igDs~~d---i~aA~~aG~~~i~v~~~~~~~~~~~~~~~~~~~~el 203 (218)
T PRK11587 157 ECVVVEDAPAG---VLSGLAAGCHVIAVNAPADTPRLDEVDLVLHSLEQL 203 (218)
T ss_pred cEEEEecchhh---hHHHHHCCCEEEEECCCCchhhhccCCEEecchhhe
Confidence 67999999887 556666777 78885431 1123577888887765
No 49
>COG0546 Gph Predicted phosphatases [General function prediction only]
Probab=85.95 E-value=2.2 Score=31.60 Aligned_cols=103 Identities=16% Similarity=0.130 Sum_probs=57.2
Q ss_pred ceEEEEcCCCHhhHHHhcCCC--CccEEeccCceeecCCCceecCCCcHHHHHHHHHHHhCCCCCCCceeEEEEeCCCcc
Q psy9704 2 CTSLLISGRNVHNVMEMVGIE--GLTYAGNHGLEIIHPDGSRFVHPIPTECASIYILRTAFGLDWTERVKIIYAGDDVTD 79 (116)
Q Consensus 2 ~~vaIVSGR~~~~l~~~l~~~--~~~~aG~HG~e~~~~~g~~~~~~~~~~~a~~~~l~~~~g~~~~~~~~pv~iGDD~TD 79 (116)
++++|+|+++...++..+... .-++..-+|. +......|.+. .. ..+....+++ . . ..+||||...|
T Consensus 106 ~~l~i~T~k~~~~~~~~l~~~gl~~~F~~i~g~-----~~~~~~KP~P~--~l-~~~~~~~~~~-~-~-~~l~VGDs~~D 174 (220)
T COG0546 106 YKLGIVTNKPERELDILLKALGLADYFDVIVGG-----DDVPPPKPDPE--PL-LLLLEKLGLD-P-E-EALMVGDSLND 174 (220)
T ss_pred CeEEEEeCCcHHHHHHHHHHhCCccccceEEcC-----CCCCCCCcCHH--HH-HHHHHHhCCC-h-h-heEEECCCHHH
Confidence 579999999999999988532 1222222221 11111122222 12 2222244544 2 3 57999999999
Q ss_pred HHHHHhhhCCCcEEEEcCC-C--CCCccceeecCCCCCC
Q psy9704 80 EDAMEALKGMAATFRVTQS-Q--IVKTAAERRLPSKPWI 115 (116)
Q Consensus 80 EdaF~al~~~g~~i~VG~~-~--~~~T~A~~~l~~~~ev 115 (116)
-.+-++..-..++|.-|.. + .....|.+.+.++.|+
T Consensus 175 i~aA~~Ag~~~v~v~~g~~~~~~l~~~~~d~vi~~~~el 213 (220)
T COG0546 175 ILAAKAAGVPAVGVTWGYNSREELAQAGADVVIDSLAEL 213 (220)
T ss_pred HHHHHHcCCCEEEEECCCCCCcchhhcCCCEEECCHHHH
Confidence 8877777522234555532 1 1234578888887664
No 50
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=85.66 E-value=1.4 Score=32.96 Aligned_cols=48 Identities=10% Similarity=0.161 Sum_probs=33.5
Q ss_pred ceEEEEcCCCHhhHHHhcCCCC--ccEEeccCceeecC-CCce-ecCCCcHH
Q psy9704 2 CTSLLISGRNVHNVMEMVGIEG--LTYAGNHGLEIIHP-DGSR-FVHPIPTE 49 (116)
Q Consensus 2 ~~vaIVSGR~~~~l~~~l~~~~--~~~aG~HG~e~~~~-~g~~-~~~~~~~~ 49 (116)
..++|.|||+...+...+...+ .+++++.|+.+... +++. .....+.+
T Consensus 37 ~~~~iaTGR~~~~~~~~~~~l~~~~~~I~~NGa~i~d~~~~~~l~~~~l~~~ 88 (272)
T PRK10530 37 YKVIIVTGRHHVAIHPFYQALALDTPAICCNGTYLYDYQAKKVLEADPLPVQ 88 (272)
T ss_pred CEEEEEcCCChHHHHHHHHhcCCCCCEEEcCCcEEEecCCCEEEEecCCCHH
Confidence 5799999999998887765433 35899999999854 4443 23344443
No 51
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=84.90 E-value=1.7 Score=33.13 Aligned_cols=26 Identities=15% Similarity=0.221 Sum_probs=22.7
Q ss_pred eEEEEeCCCccHHHHHhhhCCCcEEEEcC
Q psy9704 69 KIIYAGDDVTDEDAMEALKGMAATFRVTQ 97 (116)
Q Consensus 69 ~pv~iGDD~TDEdaF~al~~~g~~i~VG~ 97 (116)
..++|||..+|.+||+.+ |.+|.+|.
T Consensus 208 ~viafGDs~NDi~Ml~~a---g~gvAM~~ 233 (271)
T PRK03669 208 TTLGLGDGPNDAPLLDVM---DYAVVVKG 233 (271)
T ss_pred eEEEEcCCHHHHHHHHhC---CEEEEecC
Confidence 679999999999999986 67888884
No 52
>PF13242 Hydrolase_like: HAD-hyrolase-like; PDB: 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A 2HX1_D 2X4D_A 3HLT_C 3L1U_B ....
Probab=84.87 E-value=1.6 Score=26.91 Aligned_cols=43 Identities=16% Similarity=0.149 Sum_probs=26.8
Q ss_pred eEEEEeCC-CccHHHHHhhhCCCc-EEEEcCCCCC-------CccceeecCCCCC
Q psy9704 69 KIIYAGDD-VTDEDAMEALKGMAA-TFRVTQSQIV-------KTAAERRLPSKPW 114 (116)
Q Consensus 69 ~pv~iGDD-~TDEdaF~al~~~g~-~i~VG~~~~~-------~T~A~~~l~~~~e 114 (116)
..++|||. .||-.+=+ ..|+ +|.|..+... ...++|.+++..|
T Consensus 23 ~~~~VGD~~~~Di~~a~---~~G~~~ilV~tG~~~~~~~~~~~~~pd~vv~~l~e 74 (75)
T PF13242_consen 23 RCVMVGDSLETDIEAAK---AAGIDTILVLTGVYSPEDLEKAEHKPDYVVDDLKE 74 (75)
T ss_dssp GEEEEESSTTTHHHHHH---HTTSEEEEESSSSSCCCGHHHSSSTTSEEESSGGG
T ss_pred HEEEEcCCcHhHHHHHH---HcCCcEEEECCCCCCHHHHhccCCCCCEEECCHHh
Confidence 67999999 99965544 4566 8888543211 1245566665543
No 53
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=83.47 E-value=1.6 Score=33.25 Aligned_cols=36 Identities=17% Similarity=0.227 Sum_probs=28.8
Q ss_pred ceEEEEcCCCHhhHHHhcCCCCc--cEEeccCceeecC
Q psy9704 2 CTSLLISGRNVHNVMEMVGIEGL--TYAGNHGLEIIHP 37 (116)
Q Consensus 2 ~~vaIVSGR~~~~l~~~l~~~~~--~~aG~HG~e~~~~ 37 (116)
..++|+|||+...+...+...++ +++++.|..+..+
T Consensus 38 i~~~iaTgR~~~~~~~~~~~l~l~~~~i~~nGa~i~~~ 75 (273)
T PRK00192 38 IPVIPCTSKTAAEVEVLRKELGLEDPFIVENGAAIYIP 75 (273)
T ss_pred CEEEEEcCCCHHHHHHHHHHcCCCCCEEEEcCcEEEec
Confidence 57999999999998887765433 5899999998653
No 54
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=83.44 E-value=1.3 Score=33.84 Aligned_cols=28 Identities=25% Similarity=0.254 Sum_probs=24.1
Q ss_pred eEEEEeCCCccHHHHHhhhCCCcEEEEcCCC
Q psy9704 69 KIIYAGDDVTDEDAMEALKGMAATFRVTQSQ 99 (116)
Q Consensus 69 ~pv~iGDD~TDEdaF~al~~~g~~i~VG~~~ 99 (116)
..++|||..+|.+||+.+ |.++.+++.+
T Consensus 209 ~v~~~GDs~NDi~m~~~a---g~~vam~NA~ 236 (273)
T PRK00192 209 ETIALGDSPNDLPMLEAA---DIAVVVPGPD 236 (273)
T ss_pred eEEEEcCChhhHHHHHhC---CeeEEeCCCC
Confidence 689999999999999976 6788888754
No 55
>PRK13288 pyrophosphatase PpaX; Provisional
Probab=83.04 E-value=1.4 Score=32.01 Aligned_cols=100 Identities=15% Similarity=0.130 Sum_probs=52.6
Q ss_pred ceEEEEcCCCHhhHHHhcCCCCcc--EEeccCceeecCCCceecCCCcHHHHHHHHHHHhCCCCCCCceeEEEEeCCCcc
Q psy9704 2 CTSLLISGRNVHNVMEMVGIEGLT--YAGNHGLEIIHPDGSRFVHPIPTECASIYILRTAFGLDWTERVKIIYAGDDVTD 79 (116)
Q Consensus 2 ~~vaIVSGR~~~~l~~~l~~~~~~--~aG~HG~e~~~~~g~~~~~~~~~~~a~~~~l~~~~g~~~~~~~~pv~iGDD~TD 79 (116)
.+++|+|+.....++..+...++. +-.-.|.+.. ....|.+. .....++ ..+++ .. ..+||||..+|
T Consensus 99 ~~~~i~S~~~~~~~~~~l~~~gl~~~f~~i~~~~~~-----~~~Kp~p~--~~~~~~~-~~~~~--~~-~~~~iGDs~~D 167 (214)
T PRK13288 99 YKLGIVTTKMRDTVEMGLKLTGLDEFFDVVITLDDV-----EHAKPDPE--PVLKALE-LLGAK--PE-EALMVGDNHHD 167 (214)
T ss_pred CeEEEEeCCCHHHHHHHHHHcCChhceeEEEecCcC-----CCCCCCcH--HHHHHHH-HcCCC--HH-HEEEECCCHHH
Confidence 579999999998888777543332 1111122111 01122222 2222333 23322 23 67999999988
Q ss_pred HHHHHhhhCCCc-EEEEcCCC--C---CCccceeecCCCCCC
Q psy9704 80 EDAMEALKGMAA-TFRVTQSQ--I---VKTAAERRLPSKPWI 115 (116)
Q Consensus 80 EdaF~al~~~g~-~i~VG~~~--~---~~T~A~~~l~~~~ev 115 (116)
-.+-+++ |+ +|.|..+. . ..-.+.|.++++.++
T Consensus 168 i~aa~~a---G~~~i~v~~g~~~~~~l~~~~~~~~i~~~~~l 206 (214)
T PRK13288 168 ILAGKNA---GTKTAGVAWTIKGREYLEQYKPDFMLDKMSDL 206 (214)
T ss_pred HHHHHHC---CCeEEEEcCCCCCHHHHhhcCcCEEECCHHHH
Confidence 6666555 55 66663221 0 012477888877654
No 56
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=82.64 E-value=4 Score=29.44 Aligned_cols=100 Identities=15% Similarity=0.221 Sum_probs=51.0
Q ss_pred ceEEEEcCCCHhhHHHhcCCCCcc--EEeccCceeecCCCceecCCCcHHHHHHHHHHHhCCCCCCCceeEEEEeCCCcc
Q psy9704 2 CTSLLISGRNVHNVMEMVGIEGLT--YAGNHGLEIIHPDGSRFVHPIPTECASIYILRTAFGLDWTERVKIIYAGDDVTD 79 (116)
Q Consensus 2 ~~vaIVSGR~~~~l~~~l~~~~~~--~aG~HG~e~~~~~g~~~~~~~~~~~a~~~~l~~~~g~~~~~~~~pv~iGDD~TD 79 (116)
.+++|+|+.+...++..+...++. +-.-.+.+ ......|.+. .....++ ..+++ .. ..+||||..+|
T Consensus 92 ~~~~i~Sn~~~~~~~~~l~~~~l~~~f~~i~~~~-----~~~~~KP~~~--~~~~~~~-~~~~~--~~-~~l~igD~~~D 160 (205)
T TIGR01454 92 VGTAIATGKSGPRARSLLEALGLLPLFDHVIGSD-----EVPRPKPAPD--IVREALR-LLDVP--PE-DAVMVGDAVTD 160 (205)
T ss_pred CeEEEEeCCchHHHHHHHHHcCChhheeeEEecC-----cCCCCCCChH--HHHHHHH-HcCCC--hh-heEEEcCCHHH
Confidence 579999999988888776543331 11101111 0001122211 1222333 23332 23 57999998655
Q ss_pred HHHHHhhhCCCc-EEEEc--CCC--C-CCccceeecCCCCCC
Q psy9704 80 EDAMEALKGMAA-TFRVT--QSQ--I-VKTAAERRLPSKPWI 115 (116)
Q Consensus 80 EdaF~al~~~g~-~i~VG--~~~--~-~~T~A~~~l~~~~ev 115 (116)
+.+....|+ +|.|- ... + ....|.|.+.++.++
T Consensus 161 ---i~aA~~~Gi~~i~~~~g~~~~~~l~~~~~~~~~~~~~~l 199 (205)
T TIGR01454 161 ---LASARAAGTATVAALWGEGDAGELLAARPDFLLRKPQSL 199 (205)
T ss_pred ---HHHHHHcCCeEEEEEecCCChhhhhhcCCCeeeCCHHHH
Confidence 555555666 56552 211 0 124577888877654
No 57
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=82.55 E-value=3.3 Score=30.32 Aligned_cols=102 Identities=15% Similarity=0.088 Sum_probs=53.0
Q ss_pred ceEEEEcCCCHhhHHHhcCCCCccEEeccCceeecCCCceecCCCcHHHHHHHHHHHhCCCCCCCceeEEEEeCCCccHH
Q psy9704 2 CTSLLISGRNVHNVMEMVGIEGLTYAGNHGLEIIHPDGSRFVHPIPTECASIYILRTAFGLDWTERVKIIYAGDDVTDED 81 (116)
Q Consensus 2 ~~vaIVSGR~~~~l~~~l~~~~~~~aG~HG~e~~~~~g~~~~~~~~~~~a~~~~l~~~~g~~~~~~~~pv~iGDD~TDEd 81 (116)
.+++|+|+.....++.++...++.-.=. ... ..+......+.++ ..+..++ ..|++ .. -++||||..+|-.
T Consensus 109 ~~~~i~S~~~~~~~~~~l~~~~l~~~f~--~~~-~~~~~~~~Kp~~~--~~~~~~~-~~~~~--~~-~~~~igDs~~Di~ 179 (222)
T PRK10826 109 LKIGLASASPLHMLEAVLTMFDLRDYFD--ALA-SAEKLPYSKPHPE--VYLNCAA-KLGVD--PL-TCVALEDSFNGMI 179 (222)
T ss_pred CeEEEEeCCcHHHHHHHHHhCcchhccc--EEE-EcccCCCCCCCHH--HHHHHHH-HcCCC--HH-HeEEEcCChhhHH
Confidence 5799999999888887775433211000 001 0011011122222 1222333 23332 22 5799999998876
Q ss_pred HHHhhhCCCc-EEEEcCCCC----CCccceeecCCCCCC
Q psy9704 82 AMEALKGMAA-TFRVTQSQI----VKTAAERRLPSKPWI 115 (116)
Q Consensus 82 aF~al~~~g~-~i~VG~~~~----~~T~A~~~l~~~~ev 115 (116)
+-+.+ |. +|.|..+.. ....|.+.+.+..++
T Consensus 180 aA~~a---G~~~i~v~~~~~~~~~~~~~~~~~~~~~~dl 215 (222)
T PRK10826 180 AAKAA---RMRSIVVPAPEQQNDPRWALADVKLESLTEL 215 (222)
T ss_pred HHHHc---CCEEEEecCCccCchhhhhhhheeccCHHHH
Confidence 66554 55 677754310 123577777777654
No 58
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=82.32 E-value=9.2 Score=29.69 Aligned_cols=104 Identities=18% Similarity=0.169 Sum_probs=53.2
Q ss_pred ceEEEEcCCCHhhHHHhcCCCC-ccEEeccCceeecCCCceecCCCcHHHHHHHHHHHhCCCCCCCceeEEEEeCCCccH
Q psy9704 2 CTSLLISGRNVHNVMEMVGIEG-LTYAGNHGLEIIHPDGSRFVHPIPTECASIYILRTAFGLDWTERVKIIYAGDDVTDE 80 (116)
Q Consensus 2 ~~vaIVSGR~~~~l~~~l~~~~-~~~aG~HG~e~~~~~g~~~~~~~~~~~a~~~~l~~~~g~~~~~~~~pv~iGDD~TDE 80 (116)
++++|+|+.+...+...+.... ..+. ..+.....+......|.++ .....++ ..+++ .. ..+||||..+|
T Consensus 161 ~~l~IvTn~~~~~~~~~l~~~~~~~~~--~~~~~v~~~~~~~~KP~p~--~~~~a~~-~~~~~--p~-~~l~IGDs~~D- 231 (286)
T PLN02779 161 IKVAVCSTSNEKAVSKIVNTLLGPERA--QGLDVFAGDDVPKKKPDPD--IYNLAAE-TLGVD--PS-RCVVVEDSVIG- 231 (286)
T ss_pred CeEEEEeCCCHHHHHHHHHHhcccccc--CceEEEeccccCCCCCCHH--HHHHHHH-HhCcC--hH-HEEEEeCCHHh-
Confidence 6899999999988887664221 0010 0011110000001122222 1222233 23322 23 57999999875
Q ss_pred HHHHhhhCCCc-EEEEcCCC---CCCccceeecCCCCCCC
Q psy9704 81 DAMEALKGMAA-TFRVTQSQ---IVKTAAERRLPSKPWIP 116 (116)
Q Consensus 81 daF~al~~~g~-~i~VG~~~---~~~T~A~~~l~~~~ev~ 116 (116)
+.+.+..|+ .|.|-.+. +....|.+.++++.+++
T Consensus 232 --i~aA~~aG~~~i~v~~g~~~~~~l~~ad~vi~~~~~l~ 269 (286)
T PLN02779 232 --LQAAKAAGMRCIVTKSSYTADEDFSGADAVFDCLGDVP 269 (286)
T ss_pred --HHHHHHcCCEEEEEccCCccccccCCCcEEECChhhcc
Confidence 555556676 77773221 11235788888888764
No 59
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=82.21 E-value=2.9 Score=30.08 Aligned_cols=100 Identities=14% Similarity=0.157 Sum_probs=52.5
Q ss_pred ceEEEEcCCCHhhHHHhcCCCCcc--EEeccCceeecCCCceecCCCcHHHHHHHHHHHhCCCCCCCceeEEEEeCCCcc
Q psy9704 2 CTSLLISGRNVHNVMEMVGIEGLT--YAGNHGLEIIHPDGSRFVHPIPTECASIYILRTAFGLDWTERVKIIYAGDDVTD 79 (116)
Q Consensus 2 ~~vaIVSGR~~~~l~~~l~~~~~~--~aG~HG~e~~~~~g~~~~~~~~~~~a~~~~l~~~~g~~~~~~~~pv~iGDD~TD 79 (116)
.+++|+|+.+...++.++...++. +-..-|.+. .....|.++ ..+..++ ..+++ .. -.+||||..+|
T Consensus 102 ~~~~i~S~~~~~~~~~~l~~~~l~~~f~~~~~~~~-----~~~~Kp~p~--~~~~~~~-~~~~~--~~-~~~~igDs~~d 170 (213)
T TIGR01449 102 LRLGLVTNKPTPLARPLLELLGLAKYFSVLIGGDS-----LAQRKPHPD--PLLLAAE-RLGVA--PQ-QMVYVGDSRVD 170 (213)
T ss_pred CeEEEEeCCCHHHHHHHHHHcCcHhhCcEEEecCC-----CCCCCCChH--HHHHHHH-HcCCC--hh-HeEEeCCCHHH
Confidence 579999999988888877543331 000001110 001122222 2333333 23332 23 57999999877
Q ss_pred HHHHHhhhCCCc-EEEE--cCCC--C-CCccceeecCCCCCC
Q psy9704 80 EDAMEALKGMAA-TFRV--TQSQ--I-VKTAAERRLPSKPWI 115 (116)
Q Consensus 80 EdaF~al~~~g~-~i~V--G~~~--~-~~T~A~~~l~~~~ev 115 (116)
-.+-+. .|+ +|.| |... + ....|.|.+.++.++
T Consensus 171 ~~aa~~---aG~~~i~v~~g~~~~~~l~~~~a~~~i~~~~~l 209 (213)
T TIGR01449 171 IQAARA---AGCPSVLLTYGYRYGEAIDLLPPDVLYDSLNEL 209 (213)
T ss_pred HHHHHH---CCCeEEEEccCCCCCcchhhcCCCeEeCCHHHH
Confidence 655544 565 6667 3321 0 123577888877654
No 60
>TIGR01512 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase. .
Probab=81.31 E-value=2.3 Score=36.06 Aligned_cols=84 Identities=15% Similarity=0.220 Sum_probs=48.2
Q ss_pred eEEEEcCCCHhhHHHhcCCCCccEEeccCceeecCCCceecCCCcHHHHHHHHHHHhCCCCCCCceeEEEEeCCCccHHH
Q psy9704 3 TSLLISGRNVHNVMEMVGIEGLTYAGNHGLEIIHPDGSRFVHPIPTECASIYILRTAFGLDWTERVKIIYAGDDVTDEDA 82 (116)
Q Consensus 3 ~vaIVSGR~~~~l~~~l~~~~~~~aG~HG~e~~~~~g~~~~~~~~~~~a~~~~l~~~~g~~~~~~~~pv~iGDD~TDEda 82 (116)
+++|+||.+....++++...++.-. . .+ ..+. +....-..+.. .+. .++|+||+.+|-.+
T Consensus 381 ~v~vvTgd~~~~a~~i~~~lgi~~~--------f-~~---~~p~-~K~~~i~~l~~------~~~-~v~~vGDg~nD~~a 440 (536)
T TIGR01512 381 KVVMLTGDRRAVAERVARELGIDEV--------H-AE---LLPE-DKLEIVKELRE------KYG-PVAMVGDGINDAPA 440 (536)
T ss_pred cEEEEcCCCHHHHHHHHHHcCChhh--------h-hc---cCcH-HHHHHHHHHHh------cCC-EEEEEeCCHHHHHH
Confidence 7899999999988888765554210 0 00 0111 10000011111 123 78999999999998
Q ss_pred HHhhhCCCcEEEEc-CCC-CCCccceeec
Q psy9704 83 MEALKGMAATFRVT-QSQ-IVKTAAERRL 109 (116)
Q Consensus 83 F~al~~~g~~i~VG-~~~-~~~T~A~~~l 109 (116)
++.. +.+|.+| .+. .....|++.+
T Consensus 441 l~~A---~vgia~g~~~~~~~~~~ad~vl 466 (536)
T TIGR01512 441 LAAA---DVGIAMGASGSDVAIETADVVL 466 (536)
T ss_pred HHhC---CEEEEeCCCccHHHHHhCCEEE
Confidence 8876 4688887 321 1123566666
No 61
>PLN02887 hydrolase family protein
Probab=81.08 E-value=1.6 Score=37.80 Aligned_cols=42 Identities=17% Similarity=0.176 Sum_probs=31.7
Q ss_pred eEEEEeCCCccHHHHHhhhCCCcEEEEcCCC-CCCccceeecCCCC
Q psy9704 69 KIIYAGDDVTDEDAMEALKGMAATFRVTQSQ-IVKTAAERRLPSKP 113 (116)
Q Consensus 69 ~pv~iGDD~TDEdaF~al~~~g~~i~VG~~~-~~~T~A~~~l~~~~ 113 (116)
-+++|||..+|-+||+.+ |.+|-+|+.. +....|+|-..+..
T Consensus 525 eviAFGDs~NDIeMLe~A---G~gVAMgNA~eeVK~~Ad~VT~sNd 567 (580)
T PLN02887 525 EIMAIGDGENDIEMLQLA---SLGVALSNGAEKTKAVADVIGVSND 567 (580)
T ss_pred HEEEEecchhhHHHHHHC---CCEEEeCCCCHHHHHhCCEEeCCCC
Confidence 579999999999999986 6788998764 22356777665543
No 62
>PLN02423 phosphomannomutase
Probab=80.76 E-value=2.9 Score=31.76 Aligned_cols=39 Identities=21% Similarity=0.252 Sum_probs=30.5
Q ss_pred ceEEEEcCCCHhhHHHhcCCCC----ccEEeccCceeecCCCce
Q psy9704 2 CTSLLISGRNVHNVMEMVGIEG----LTYAGNHGLEIIHPDGSR 41 (116)
Q Consensus 2 ~~vaIVSGR~~~~l~~~l~~~~----~~~aG~HG~e~~~~~g~~ 41 (116)
..++|.|||+...+.+.|+..- .+++++-|+.+.. +|+.
T Consensus 40 i~fviaTGR~~~~~~~~~~~~~~~~~~~~I~~NGa~i~~-~g~~ 82 (245)
T PLN02423 40 VTVGVVGGSDLSKISEQLGKTVINDYDYVFSENGLVAHK-DGKL 82 (245)
T ss_pred CEEEEECCcCHHHHHHHhcccccccCCEEEECCceEEEe-CCEE
Confidence 4689999999999988887641 3688999999874 5543
No 63
>TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase. This alignment encompasses two equivalog models for the copper and cadmium-type heavy metal transporting P-type ATPases (TIGR01511 and TIGR01512) as well as those species which score ambiguously between both models. For more comments and references, see the files on TIGR01511 and 01512.
Probab=80.26 E-value=11 Score=31.92 Aligned_cols=87 Identities=14% Similarity=0.166 Sum_probs=50.0
Q ss_pred ceEEEEcCCCHhhHHHhcCCCCccEEeccCceeecCCCceecCCCcHHHHHHHHHHHhCCCCCCCceeEEEEeCCCccHH
Q psy9704 2 CTSLLISGRNVHNVMEMVGIEGLTYAGNHGLEIIHPDGSRFVHPIPTECASIYILRTAFGLDWTERVKIIYAGDDVTDED 81 (116)
Q Consensus 2 ~~vaIVSGR~~~~l~~~l~~~~~~~aG~HG~e~~~~~g~~~~~~~~~~~a~~~~l~~~~g~~~~~~~~pv~iGDD~TDEd 81 (116)
.+++|+||.+....++++...++.- .. ....+.+ -.+...+.+. .+. ..+|+||+.+|-.
T Consensus 402 i~v~ivTgd~~~~a~~i~~~lgi~~-------~f-------~~~~p~~-K~~~v~~l~~----~~~-~v~~vGDg~nD~~ 461 (556)
T TIGR01525 402 IKLVMLTGDNRSAAEAVAAELGIDE-------VH-------AELLPED-KLAIVKELQE----EGG-VVAMVGDGINDAP 461 (556)
T ss_pred CeEEEEeCCCHHHHHHHHHHhCCCe-------ee-------ccCCHHH-HHHHHHHHHH----cCC-EEEEEECChhHHH
Confidence 6899999999998888776554420 00 0000111 0111111110 133 7899999999999
Q ss_pred HHHhhhCCCcEEEEcCCCC-CCccceeecCC
Q psy9704 82 AMEALKGMAATFRVTQSQI-VKTAAERRLPS 111 (116)
Q Consensus 82 aF~al~~~g~~i~VG~~~~-~~T~A~~~l~~ 111 (116)
++++. +++|.+|...+ ....|++.+.+
T Consensus 462 al~~A---~vgia~g~~~~~~~~~Ad~vi~~ 489 (556)
T TIGR01525 462 ALAAA---DVGIAMGAGSDVAIEAADIVLLN 489 (556)
T ss_pred HHhhC---CEeEEeCCCCHHHHHhCCEEEeC
Confidence 88776 47888875321 11246666653
No 64
>PTZ00174 phosphomannomutase; Provisional
Probab=80.12 E-value=2.5 Score=31.91 Aligned_cols=35 Identities=14% Similarity=0.244 Sum_probs=28.6
Q ss_pred ceEEEEcCCCHhhHHHhcCCC---Cc-cEEeccCceeec
Q psy9704 2 CTSLLISGRNVHNVMEMVGIE---GL-TYAGNHGLEIIH 36 (116)
Q Consensus 2 ~~vaIVSGR~~~~l~~~l~~~---~~-~~aG~HG~e~~~ 36 (116)
..++|.|||+...+.+.++.. .+ +++++-|+.+..
T Consensus 39 i~~viaTGR~~~~i~~~l~~~~~~~~~~~I~~NGa~I~~ 77 (247)
T PTZ00174 39 FKIGVVGGSDYPKIKEQLGEDVLEDFDYVFSENGLVAYK 77 (247)
T ss_pred CEEEEEcCCCHHHHHHHHhhhhhcccCeEEeCCceEEEE
Confidence 579999999999999988743 22 568999999875
No 65
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=79.96 E-value=6.8 Score=29.28 Aligned_cols=80 Identities=14% Similarity=0.125 Sum_probs=42.5
Q ss_pred ceEEEEcCCCHhhHHHhc---CCCCcc---EEeccCceeecCCCceecCCCcHHHHHHHHHHHhCCCCCCCceeEEEEeC
Q psy9704 2 CTSLLISGRNVHNVMEMV---GIEGLT---YAGNHGLEIIHPDGSRFVHPIPTECASIYILRTAFGLDWTERVKIIYAGD 75 (116)
Q Consensus 2 ~~vaIVSGR~~~~l~~~l---~~~~~~---~aG~HG~e~~~~~g~~~~~~~~~~~a~~~~l~~~~g~~~~~~~~pv~iGD 75 (116)
.+++|+|+.+.+.++.++ +..++. +++.. ......|.++ .....++ ..++. ... -.+||||
T Consensus 116 ~~l~IvT~~~~~~~~~~l~~~gl~~~f~d~ii~~~--------~~~~~KP~p~--~~~~a~~-~l~~~-~~~-~~l~IGD 182 (253)
T TIGR01422 116 IKIGSTTGYTREMMDVVAPEAALQGYRPDYNVTTD--------DVPAGRPAPW--MALKNAI-ELGVY-DVA-ACVKVGD 182 (253)
T ss_pred CeEEEECCCcHHHHHHHHHHHHhcCCCCceEEccc--------cCCCCCCCHH--HHHHHHH-HcCCC-Cch-heEEECC
Confidence 579999999998888765 333321 11211 1011122222 2223333 23331 122 5799999
Q ss_pred CCccHHHHHhhhCCCc-EEEEcC
Q psy9704 76 DVTDEDAMEALKGMAA-TFRVTQ 97 (116)
Q Consensus 76 D~TDEdaF~al~~~g~-~i~VG~ 97 (116)
-.+| +.+.+..|+ +|.|..
T Consensus 183 s~~D---i~aA~~aGi~~i~v~~ 202 (253)
T TIGR01422 183 TVPD---IEEGRNAGMWTVGLIL 202 (253)
T ss_pred cHHH---HHHHHHCCCeEEEEec
Confidence 9866 555556666 777743
No 66
>PRK13226 phosphoglycolate phosphatase; Provisional
Probab=79.78 E-value=6 Score=29.33 Aligned_cols=101 Identities=14% Similarity=0.118 Sum_probs=50.2
Q ss_pred ceEEEEcCCCHhhHHHhcCCCCccEEeccCceee-cCCCceecCCCcHHHHHHHHHHHhCCCCCCCceeEEEEeCCCccH
Q psy9704 2 CTSLLISGRNVHNVMEMVGIEGLTYAGNHGLEII-HPDGSRFVHPIPTECASIYILRTAFGLDWTERVKIIYAGDDVTDE 80 (116)
Q Consensus 2 ~~vaIVSGR~~~~l~~~l~~~~~~~aG~HG~e~~-~~~g~~~~~~~~~~~a~~~~l~~~~g~~~~~~~~pv~iGDD~TDE 80 (116)
..++|+|+.+...++..+...++.- =++.- ..+......|.++ .....++ ..|++ .. -.+||||..+|-
T Consensus 112 ~~l~i~Tn~~~~~~~~~l~~~~l~~----~f~~i~~~~~~~~~KP~p~--~~~~~~~-~l~~~--p~-~~l~IGDs~~Di 181 (229)
T PRK13226 112 CVWGIVTNKPEYLARLILPQLGWEQ----RCAVLIGGDTLAERKPHPL--PLLVAAE-RIGVA--PT-DCVYVGDDERDI 181 (229)
T ss_pred CeEEEECCCCHHHHHHHHHHcCchh----cccEEEecCcCCCCCCCHH--HHHHHHH-HhCCC--hh-hEEEeCCCHHHH
Confidence 5789999998887776654332210 00110 0010011122222 1222222 23332 23 579999998886
Q ss_pred HHHHhhhCCCc-EEEE--cCC--CCC--CccceeecCCCCCC
Q psy9704 81 DAMEALKGMAA-TFRV--TQS--QIV--KTAAERRLPSKPWI 115 (116)
Q Consensus 81 daF~al~~~g~-~i~V--G~~--~~~--~T~A~~~l~~~~ev 115 (116)
.+-+.+ |. +|.| |.. ++. .-.+.|.+.+++++
T Consensus 182 ~aA~~a---G~~~i~v~~g~~~~~~~~~~~~~~~~i~~~~el 220 (229)
T PRK13226 182 LAARAA---GMPSVAALWGYRLHDDDPLAWQADVLVEQPQLL 220 (229)
T ss_pred HHHHHC---CCcEEEEeecCCCCCcChhhcCCCeeeCCHHHH
Confidence 666555 54 5555 321 101 12377888887653
No 67
>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional
Probab=79.11 E-value=8 Score=34.25 Aligned_cols=72 Identities=15% Similarity=0.312 Sum_probs=45.9
Q ss_pred ceEEEEcCCCHhhHHHhcCCCCccEEeccCceeecCCCceecCCCcHHHHHHHHHHHhCCCCCCCceeEEEEeCCCccHH
Q psy9704 2 CTSLLISGRNVHNVMEMVGIEGLTYAGNHGLEIIHPDGSRFVHPIPTECASIYILRTAFGLDWTERVKIIYAGDDVTDED 81 (116)
Q Consensus 2 ~~vaIVSGR~~~~l~~~l~~~~~~~aG~HG~e~~~~~g~~~~~~~~~~~a~~~~l~~~~g~~~~~~~~pv~iGDD~TDEd 81 (116)
.+++++||......+++....++.+.++ .. +++ -.+..-+.+. +. .++|+||+++|-.
T Consensus 585 i~~~llTGd~~~~a~~ia~~lgi~~~~~-------------~~--p~~-K~~~v~~l~~-----~~-~v~mvGDgiNDap 642 (741)
T PRK11033 585 IKGVMLTGDNPRAAAAIAGELGIDFRAG-------------LL--PED-KVKAVTELNQ-----HA-PLAMVGDGINDAP 642 (741)
T ss_pred CEEEEEcCCCHHHHHHHHHHcCCCeecC-------------CC--HHH-HHHHHHHHhc-----CC-CEEEEECCHHhHH
Confidence 5789999999999888877666643211 01 111 0111111111 23 6899999999999
Q ss_pred HHHhhhCCCcEEEEcCC
Q psy9704 82 AMEALKGMAATFRVTQS 98 (116)
Q Consensus 82 aF~al~~~g~~i~VG~~ 98 (116)
++++. +++|-+|.+
T Consensus 643 Al~~A---~vgia~g~~ 656 (741)
T PRK11033 643 AMKAA---SIGIAMGSG 656 (741)
T ss_pred HHHhC---CeeEEecCC
Confidence 98776 478888765
No 68
>PRK13223 phosphoglycolate phosphatase; Provisional
Probab=78.94 E-value=7.4 Score=29.89 Aligned_cols=100 Identities=13% Similarity=0.146 Sum_probs=51.6
Q ss_pred ceEEEEcCCCHhhHHHhcCCCCccE--EeccCceeecCCCceecCCCcHHHHHHHHHHHhCCCCCCCceeEEEEeCCCcc
Q psy9704 2 CTSLLISGRNVHNVMEMVGIEGLTY--AGNHGLEIIHPDGSRFVHPIPTECASIYILRTAFGLDWTERVKIIYAGDDVTD 79 (116)
Q Consensus 2 ~~vaIVSGR~~~~l~~~l~~~~~~~--aG~HG~e~~~~~g~~~~~~~~~~~a~~~~l~~~~g~~~~~~~~pv~iGDD~TD 79 (116)
++++|+|+.+...++..+...++.- -.-++.+. .....+.+. ..+..++ ..|+ ... ..+||||...|
T Consensus 118 ~~l~ivTn~~~~~~~~~l~~~~i~~~f~~i~~~d~-----~~~~Kp~p~--~~~~~~~-~~g~--~~~-~~l~IGD~~~D 186 (272)
T PRK13223 118 VEMALITNKPERFVAPLLDQMKIGRYFRWIIGGDT-----LPQKKPDPA--ALLFVMK-MAGV--PPS-QSLFVGDSRSD 186 (272)
T ss_pred CeEEEEECCcHHHHHHHHHHcCcHhhCeEEEecCC-----CCCCCCCcH--HHHHHHH-HhCC--Chh-HEEEECCCHHH
Confidence 5799999999888877765433210 00011111 011122122 2333333 2332 223 67999999888
Q ss_pred HHHHHhhhCCCc-EEEE--cCCCC---CCccceeecCCCCCC
Q psy9704 80 EDAMEALKGMAA-TFRV--TQSQI---VKTAAERRLPSKPWI 115 (116)
Q Consensus 80 EdaF~al~~~g~-~i~V--G~~~~---~~T~A~~~l~~~~ev 115 (116)
-.+-+.. |+ ++.| |.... ....+.|.+.++.++
T Consensus 187 i~aA~~a---Gi~~i~v~~G~~~~~~l~~~~~~~vi~~l~el 225 (272)
T PRK13223 187 VLAAKAA---GVQCVALSYGYNHGRPIAEESPALVIDDLRAL 225 (272)
T ss_pred HHHHHHC---CCeEEEEecCCCCchhhhhcCCCEEECCHHHH
Confidence 7765554 54 5555 32111 123577777776553
No 69
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=78.90 E-value=9.9 Score=27.53 Aligned_cols=103 Identities=17% Similarity=0.215 Sum_probs=51.1
Q ss_pred ceEEEEcCCCHhhHHHhcCCCCccEEeccCce-eecCCCceecCCCcHHHHHHHHHHHhCCCCCCCceeEEEEeCCCccH
Q psy9704 2 CTSLLISGRNVHNVMEMVGIEGLTYAGNHGLE-IIHPDGSRFVHPIPTECASIYILRTAFGLDWTERVKIIYAGDDVTDE 80 (116)
Q Consensus 2 ~~vaIVSGR~~~~l~~~l~~~~~~~aG~HG~e-~~~~~g~~~~~~~~~~~a~~~~l~~~~g~~~~~~~~pv~iGDD~TDE 80 (116)
++++|+|+...+.++..+...++.. .+-+. +...+......|.++ .....++ ..++. ... .++||||-.+|
T Consensus 104 ~~~~ivT~~~~~~~~~~l~~~~l~~--~~~f~~i~~~~~~~~~KP~p~--~~~~a~~-~~~~~-~~~-~~~~igD~~~D- 175 (220)
T TIGR03351 104 IKVALTTGFDRDTAERLLEKLGWTV--GDDVDAVVCPSDVAAGRPAPD--LILRAME-LTGVQ-DVQ-SVAVAGDTPND- 175 (220)
T ss_pred CEEEEEeCCchHHHHHHHHHhhhhh--hccCCEEEcCCcCCCCCCCHH--HHHHHHH-HcCCC-Chh-HeEEeCCCHHH-
Confidence 5799999999998888875433320 00001 111111111123222 2223333 23322 123 68999999876
Q ss_pred HHHHhhhCCCc-E-EEEcCCC--C---CCccceeecCCCCC
Q psy9704 81 DAMEALKGMAA-T-FRVTQSQ--I---VKTAAERRLPSKPW 114 (116)
Q Consensus 81 daF~al~~~g~-~-i~VG~~~--~---~~T~A~~~l~~~~e 114 (116)
+++.+..|+ + |.|..+. . ....+.+.+.++.+
T Consensus 176 --i~aa~~aG~~~~i~~~~g~~~~~~~~~~~~~~~i~~~~~ 214 (220)
T TIGR03351 176 --LEAGINAGAGAVVGVLTGAHDAEELSRHPHTHVLDSVAD 214 (220)
T ss_pred --HHHHHHCCCCeEEEEecCCCcHHHHhhcCCceeecCHHH
Confidence 556666677 5 5663321 0 01235566666544
No 70
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=78.84 E-value=3.2 Score=31.10 Aligned_cols=91 Identities=20% Similarity=0.186 Sum_probs=52.6
Q ss_pred ceEEEEcCCCHhhHHHhcCCCCccEEeccCceeec--CCCceecCCCc---HHHHHHHHHHHhCCCCCCCceeEEEEeCC
Q psy9704 2 CTSLLISGRNVHNVMEMVGIEGLTYAGNHGLEIIH--PDGSRFVHPIP---TECASIYILRTAFGLDWTERVKIIYAGDD 76 (116)
Q Consensus 2 ~~vaIVSGR~~~~l~~~l~~~~~~~aG~HG~e~~~--~~g~~~~~~~~---~~~a~~~~l~~~~g~~~~~~~~pv~iGDD 76 (116)
.+|+||||=.-.-++.+-...++.++-..=++... -.|........ ...+.+..+. ..|+++ . ..+++||.
T Consensus 94 ~~v~iiSgg~~~lv~~ia~~lg~d~~~an~l~~~dG~ltG~v~g~~~~~~~K~~~l~~~~~-~~g~~~--~-~~~a~gDs 169 (212)
T COG0560 94 AKVVIISGGFTFLVEPIAERLGIDYVVANELEIDDGKLTGRVVGPICDGEGKAKALRELAA-ELGIPL--E-ETVAYGDS 169 (212)
T ss_pred CEEEEEcCChHHHHHHHHHHhCCchheeeEEEEeCCEEeceeeeeecCcchHHHHHHHHHH-HcCCCH--H-HeEEEcCc
Confidence 57999999988776666655666665555555543 01221111111 1102211222 334432 2 46999999
Q ss_pred CccHHHHHhhhCCCcEEEEcCCC
Q psy9704 77 VTDEDAMEALKGMAATFRVTQSQ 99 (116)
Q Consensus 77 ~TDEdaF~al~~~g~~i~VG~~~ 99 (116)
.+|-.||+++ |.+|.|.+.|
T Consensus 170 ~nDlpml~~a---g~~ia~n~~~ 189 (212)
T COG0560 170 ANDLPMLEAA---GLPIAVNPKP 189 (212)
T ss_pred hhhHHHHHhC---CCCeEeCcCH
Confidence 9999999987 5566776553
No 71
>TIGR01544 HAD-SF-IE haloacid dehalogenase superfamily, subfamily IE hydrolase, TIGR01544. This group of sequences was found during searches for members of the haloacid dehalogenase (HAD) superfamily. All of the conserved catalytic motifs are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches (IA, TIGR01493, TIGR01509, TIGR01549; IB, TIGR01488; IC, TIGR01494; ID, TIGR01658; IF TIGR01545) of that subfamily as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.
Probab=77.66 E-value=17 Score=28.71 Aligned_cols=91 Identities=14% Similarity=0.158 Sum_probs=50.3
Q ss_pred ceEEEEcCCCHhhHHHhcCCCCc-----cEEeccCceeecCCCcee--cCCC-----cHHHHHHHHHHHhCCCCCCCcee
Q psy9704 2 CTSLLISGRNVHNVMEMVGIEGL-----TYAGNHGLEIIHPDGSRF--VHPI-----PTECASIYILRTAFGLDWTERVK 69 (116)
Q Consensus 2 ~~vaIVSGR~~~~l~~~l~~~~~-----~~aG~HG~e~~~~~g~~~--~~~~-----~~~~a~~~~l~~~~g~~~~~~~~ 69 (116)
.+++|+||=....++..|...++ .+.+|.= +.. .+|... ..|. ..+.+.+ .....++.--... .
T Consensus 138 Ipv~IvS~G~~~~Ie~vL~~lgl~~~~~~IvSN~L-~f~-~dGvltG~~~P~i~~~~K~~~v~~-~~~~~~~~~~~~~-~ 213 (277)
T TIGR01544 138 IPVFIFSAGIGNVLEEVLRQAGVYHPNVKVVSNFM-DFD-EDGVLKGFKGPLIHTFNKNHDVAL-RNTEYFNQLKDRS-N 213 (277)
T ss_pred CcEEEEeCCcHHHHHHHHHHcCCCCcCceEEeeeE-EEC-CCCeEeCCCCCcccccccHHHHHH-HHHHHhCccCCcc-e
Confidence 58999999998888888764333 4544331 111 123221 1111 1110111 1111222101122 6
Q ss_pred EEEEeCCCccHHHHHhhhCCCcEEEEc
Q psy9704 70 IIYAGDDVTDEDAMEALKGMAATFRVT 96 (116)
Q Consensus 70 pv~iGDD~TDEdaF~al~~~g~~i~VG 96 (116)
.|++||..||-.|..-++...--||||
T Consensus 214 vI~vGDs~~Dl~ma~g~~~~~~~l~ig 240 (277)
T TIGR01544 214 IILLGDSQGDLRMADGVANVEHILKIG 240 (277)
T ss_pred EEEECcChhhhhHhcCCCcccceEEEE
Confidence 899999999999988886655578888
No 72
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=77.40 E-value=2.2 Score=31.22 Aligned_cols=18 Identities=28% Similarity=0.291 Sum_probs=16.7
Q ss_pred eEEEEeCCCccHHHHHhh
Q psy9704 69 KIIYAGDDVTDEDAMEAL 86 (116)
Q Consensus 69 ~pv~iGDD~TDEdaF~al 86 (116)
..++|||-.+|.+||+..
T Consensus 197 ~vi~~GD~~NDi~ml~~a 214 (221)
T TIGR02463 197 KTLGLGDGPNDLPLLEVA 214 (221)
T ss_pred cEEEECCCHHHHHHHHhC
Confidence 689999999999999975
No 73
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=76.63 E-value=6.8 Score=26.38 Aligned_cols=23 Identities=9% Similarity=0.115 Sum_probs=18.0
Q ss_pred CceEEEEcCCCHhhHHHhcCCCC
Q psy9704 1 MCTSLLISGRNVHNVMEMVGIEG 23 (116)
Q Consensus 1 ~~~vaIVSGR~~~~l~~~l~~~~ 23 (116)
.++++|+|+.+.+.++..+.-.+
T Consensus 93 ~~~~~i~Sn~~~~~~~~~l~~~~ 115 (176)
T PF13419_consen 93 GIPLVIVSNGSRERIERVLERLG 115 (176)
T ss_dssp TSEEEEEESSEHHHHHHHHHHTT
T ss_pred cceeEEeecCCcccccccccccc
Confidence 36899999999998887775433
No 74
>PLN02575 haloacid dehalogenase-like hydrolase
Probab=76.25 E-value=7.7 Score=31.97 Aligned_cols=100 Identities=17% Similarity=0.151 Sum_probs=54.3
Q ss_pred ceEEEEcCCCHhhHHHhcCCCCcc--EEeccCceeecCCCceecCCCcHHHHHHHHHHHhCCCCCCCceeEEEEeCCCcc
Q psy9704 2 CTSLLISGRNVHNVMEMVGIEGLT--YAGNHGLEIIHPDGSRFVHPIPTECASIYILRTAFGLDWTERVKIIYAGDDVTD 79 (116)
Q Consensus 2 ~~vaIVSGR~~~~l~~~l~~~~~~--~aG~HG~e~~~~~g~~~~~~~~~~~a~~~~l~~~~g~~~~~~~~pv~iGDD~TD 79 (116)
++++|+|..+.+.++..+...++. +-.--|.+. .....|.++ ...+.++ .+|+ ... ..+||||..+|
T Consensus 233 iklaIaSn~~~~~~~~~L~~lgL~~yFd~Iv~sdd-----v~~~KP~Pe--ifl~A~~-~lgl--~Pe-ecl~IGDS~~D 301 (381)
T PLN02575 233 IPMALVSTRPRKTLENAIGSIGIRGFFSVIVAAED-----VYRGKPDPE--MFIYAAQ-LLNF--IPE-RCIVFGNSNQT 301 (381)
T ss_pred CeEEEEeCCCHHHHHHHHHHcCCHHHceEEEecCc-----CCCCCCCHH--HHHHHHH-HcCC--Ccc-cEEEEcCCHHH
Confidence 679999999999988877643321 111111111 001122222 1222222 2332 233 57999998765
Q ss_pred HHHHHhhhCCCc-EEEEcCCC--CCCccceeecCCCCCC
Q psy9704 80 EDAMEALKGMAA-TFRVTQSQ--IVKTAAERRLPSKPWI 115 (116)
Q Consensus 80 EdaF~al~~~g~-~i~VG~~~--~~~T~A~~~l~~~~ev 115 (116)
+.+....|. +|.|.... .....|.+.+.++.|+
T Consensus 302 ---IeAAk~AGm~~IgV~~~~~~~~l~~Ad~iI~s~~EL 337 (381)
T PLN02575 302 ---VEAAHDARMKCVAVASKHPIYELGAADLVVRRLDEL 337 (381)
T ss_pred ---HHHHHHcCCEEEEECCCCChhHhcCCCEEECCHHHH
Confidence 777777777 78885421 1123467777777664
No 75
>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.
Probab=75.31 E-value=22 Score=24.61 Aligned_cols=21 Identities=14% Similarity=-0.018 Sum_probs=16.6
Q ss_pred ceEEEEcCCCHhhHHHhcCCC
Q psy9704 2 CTSLLISGRNVHNVMEMVGIE 22 (116)
Q Consensus 2 ~~vaIVSGR~~~~l~~~l~~~ 22 (116)
.+++|+|+.....++.++...
T Consensus 89 ~~~~i~S~~~~~~~~~~l~~~ 109 (188)
T TIGR01489 89 IDFIVISDGNDFFIDPVLEGI 109 (188)
T ss_pred CcEEEEeCCcHHHHHHHHHHc
Confidence 578999999988888776543
No 76
>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase. One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.
Probab=73.12 E-value=23 Score=30.29 Aligned_cols=85 Identities=19% Similarity=0.239 Sum_probs=50.0
Q ss_pred ceEEEEcCCCHhhHHHhcCCCCccEEeccCceeecCCCceecCCCcHHHHHHHHHHHhCCCCCCCceeEEEEeCCCccHH
Q psy9704 2 CTSLLISGRNVHNVMEMVGIEGLTYAGNHGLEIIHPDGSRFVHPIPTECASIYILRTAFGLDWTERVKIIYAGDDVTDED 81 (116)
Q Consensus 2 ~~vaIVSGR~~~~l~~~l~~~~~~~aG~HG~e~~~~~g~~~~~~~~~~~a~~~~l~~~~g~~~~~~~~pv~iGDD~TDEd 81 (116)
.+++|+||......+++....++.+.++ ..+. .....-..+.. .++ .++|+||+.+|-.
T Consensus 422 i~v~ilSgd~~~~a~~ia~~lgi~~~~~-------------~~p~-~K~~~v~~l~~------~~~-~v~~VGDg~nD~~ 480 (562)
T TIGR01511 422 IEPVMLTGDNRKTAKAVAKELGINVRAE-------------VLPD-DKAALIKELQE------KGR-VVAMVGDGINDAP 480 (562)
T ss_pred CeEEEEcCCCHHHHHHHHHHcCCcEEcc-------------CChH-HHHHHHHHHHH------cCC-EEEEEeCCCccHH
Confidence 5789999999998888876666532110 0110 11000011121 134 7899999999988
Q ss_pred HHHhhhCCCcEEEEcCCCC-CCccceeecC
Q psy9704 82 AMEALKGMAATFRVTQSQI-VKTAAERRLP 110 (116)
Q Consensus 82 aF~al~~~g~~i~VG~~~~-~~T~A~~~l~ 110 (116)
+++.. +++|.+|.+.+ ....|++.+.
T Consensus 481 al~~A---~vgia~g~g~~~a~~~Advvl~ 507 (562)
T TIGR01511 481 ALAQA---DVGIAIGAGTDVAIEAADVVLM 507 (562)
T ss_pred HHhhC---CEEEEeCCcCHHHHhhCCEEEe
Confidence 87765 46778875421 1234666664
No 77
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=72.94 E-value=4.8 Score=30.94 Aligned_cols=44 Identities=16% Similarity=0.060 Sum_probs=28.2
Q ss_pred eEEEEeCCC-ccHHHHHhhhCCCc-EEEEcCCCC----C---------CccceeecCCCCCC
Q psy9704 69 KIIYAGDDV-TDEDAMEALKGMAA-TFRVTQSQI----V---------KTAAERRLPSKPWI 115 (116)
Q Consensus 69 ~pv~iGDD~-TDEdaF~al~~~g~-~i~VG~~~~----~---------~T~A~~~l~~~~ev 115 (116)
..+||||+. ||-. +.+..|+ +|.|..+-. . .....|.++++.++
T Consensus 221 ~~lmIGD~~~tDI~---~A~~aGi~si~V~~G~~~~~~l~~~~~~~~~~~~Pd~~~~~l~~l 279 (279)
T TIGR01452 221 RTLMVGDRLETDIL---FGHRCGMTTVLVLSGVSRLEEAQEYLAAGQHDLVPDYVVESLADL 279 (279)
T ss_pred hEEEECCChHHHHH---HHHHcCCcEEEECCCCCCHHHHHhhhcccccCCCCCEEecccccC
Confidence 689999994 9944 3445677 888843310 0 12357888887764
No 78
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=72.87 E-value=10 Score=28.56 Aligned_cols=100 Identities=11% Similarity=0.084 Sum_probs=52.9
Q ss_pred ceEEEEcCCCHhhHHHhcCCCCcc--EEeccCceeecCCCceecCCCcHHHHHHHHHHHhCCCCCCCceeEEEEeCCCcc
Q psy9704 2 CTSLLISGRNVHNVMEMVGIEGLT--YAGNHGLEIIHPDGSRFVHPIPTECASIYILRTAFGLDWTERVKIIYAGDDVTD 79 (116)
Q Consensus 2 ~~vaIVSGR~~~~l~~~l~~~~~~--~aG~HG~e~~~~~g~~~~~~~~~~~a~~~~l~~~~g~~~~~~~~pv~iGDD~TD 79 (116)
++++|+|+.+...++..+...++. +-.-.+.+ ......|.++ .....++ ..+++ .. ..+||||-.+|
T Consensus 125 ~~l~I~Tn~~~~~~~~~l~~~gl~~~Fd~iv~~~-----~~~~~KP~p~--~~~~a~~-~~~~~--~~-~~l~vgDs~~D 193 (248)
T PLN02770 125 LKRAAVTNAPRENAELMISLLGLSDFFQAVIIGS-----ECEHAKPHPD--PYLKALE-VLKVS--KD-HTFVFEDSVSG 193 (248)
T ss_pred CeEEEEeCCCHHHHHHHHHHcCChhhCcEEEecC-----cCCCCCCChH--HHHHHHH-HhCCC--hh-HEEEEcCCHHH
Confidence 579999999999888877543321 10101111 1011122222 1222333 23322 23 57999999876
Q ss_pred HHHHHhhhCCCc-EEEEcC--CCC--CCccceeecCCCCCC
Q psy9704 80 EDAMEALKGMAA-TFRVTQ--SQI--VKTAAERRLPSKPWI 115 (116)
Q Consensus 80 EdaF~al~~~g~-~i~VG~--~~~--~~T~A~~~l~~~~ev 115 (116)
- ++.+..|+ +|.|.. .+. ....|.|.+.++.++
T Consensus 194 i---~aA~~aGi~~i~v~~g~~~~~l~~~~a~~vi~~~~e~ 231 (248)
T PLN02770 194 I---KAGVAAGMPVVGLTTRNPESLLMEAKPTFLIKDYEDP 231 (248)
T ss_pred H---HHHHHCCCEEEEEeCCCCHHHHhhcCCCEEeccchhh
Confidence 4 44455676 777732 110 123577888888764
No 79
>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein. This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).
Probab=72.24 E-value=15 Score=27.12 Aligned_cols=85 Identities=18% Similarity=0.227 Sum_probs=45.5
Q ss_pred ceEEEEcCCCHhhHHHhcCCCCcc-EEeccCceeecCC---CceecCCCcHHHHHHHHHHHhCCCCCCCceeEEEEeCCC
Q psy9704 2 CTSLLISGRNVHNVMEMVGIEGLT-YAGNHGLEIIHPD---GSRFVHPIPTECASIYILRTAFGLDWTERVKIIYAGDDV 77 (116)
Q Consensus 2 ~~vaIVSGR~~~~l~~~l~~~~~~-~aG~HG~e~~~~~---g~~~~~~~~~~~a~~~~l~~~~g~~~~~~~~pv~iGDD~ 77 (116)
.+++||||-....++.++...++. +.++ -++....+ |.............. .+. .. +. ..+|+||..
T Consensus 84 ~~~~IVS~~~~~~~~~il~~lgi~~~~an-~l~~~~~g~~tG~~~~~~~~K~~~l~-~l~-~~-----~~-~~v~vGDs~ 154 (203)
T TIGR02137 84 FQVVILSDTFYEFSQPLMRQLGFPTLLCH-KLEIDDSDRVVGYQLRQKDPKRQSVI-AFK-SL-----YY-RVIAAGDSY 154 (203)
T ss_pred CeEEEEeCChHHHHHHHHHHcCCchhhce-eeEEecCCeeECeeecCcchHHHHHH-HHH-hh-----CC-CEEEEeCCH
Confidence 379999999998888877655554 2222 23331100 111111111110111 122 12 22 579999999
Q ss_pred ccHHHHHhhhCCCcEEEEcCC
Q psy9704 78 TDEDAMEALKGMAATFRVTQS 98 (116)
Q Consensus 78 TDEdaF~al~~~g~~i~VG~~ 98 (116)
+|-.+++.. |.+|.+..+
T Consensus 155 nDl~ml~~A---g~~ia~~ak 172 (203)
T TIGR02137 155 NDTTMLSEA---HAGILFHAP 172 (203)
T ss_pred HHHHHHHhC---CCCEEecCC
Confidence 998777765 556666554
No 80
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=72.04 E-value=5.4 Score=32.01 Aligned_cols=38 Identities=18% Similarity=0.191 Sum_probs=30.0
Q ss_pred ceEEEEcCCCHhhHHHhcCCCCc--cEEeccCceeecCCC
Q psy9704 2 CTSLLISGRNVHNVMEMVGIEGL--TYAGNHGLEIIHPDG 39 (116)
Q Consensus 2 ~~vaIVSGR~~~~l~~~l~~~~~--~~aG~HG~e~~~~~g 39 (116)
+.|++.|||....+..++...++ +++++.|+.+..|.+
T Consensus 35 I~vVlaTGRt~~ev~~l~~~Lgl~~p~I~eNGA~I~~p~~ 74 (302)
T PRK12702 35 IPLVLYSLRTRAQLEHLCRQLRLEHPFICEDGSAIYVPEH 74 (302)
T ss_pred CEEEEEcCCCHHHHHHHHHHhCCCCeEEEeCCcEEEEccc
Confidence 67999999999997777654433 699999999876643
No 81
>PRK10444 UMP phosphatase; Provisional
Probab=70.27 E-value=4.4 Score=30.97 Aligned_cols=44 Identities=23% Similarity=0.143 Sum_probs=29.0
Q ss_pred eEEEEeCCC-ccHHHHHhhhCCCc-EEEEcCCCCC-------CccceeecCCCCCC
Q psy9704 69 KIIYAGDDV-TDEDAMEALKGMAA-TFRVTQSQIV-------KTAAERRLPSKPWI 115 (116)
Q Consensus 69 ~pv~iGDD~-TDEdaF~al~~~g~-~i~VG~~~~~-------~T~A~~~l~~~~ev 115 (116)
..+||||.. || +...+..|+ +|.|..+... .-..+|.++++.++
T Consensus 193 ~~v~IGD~~~tD---i~~A~~~G~~~vlV~~G~~~~~~l~~~~~~pd~~~~sl~el 245 (248)
T PRK10444 193 ETVIVGDNLRTD---ILAGFQAGLETILVLSGVSTLDDIDSMPFRPSWIYPSVADI 245 (248)
T ss_pred cEEEECCCcHHH---HHHHHHcCCCEEEECCCCCCHHHHhcCCCCCCEEECCHHHh
Confidence 689999997 88 555556677 8888544200 12356777777654
No 82
>PRK13582 thrH phosphoserine phosphatase; Provisional
Probab=69.63 E-value=17 Score=25.87 Aligned_cols=101 Identities=15% Similarity=0.125 Sum_probs=49.6
Q ss_pred ceEEEEcCCCHhhHHHhcCCCCcc-EEeccCceeecCCCce----ecCCCcHHHHHHHHHHHhCCCCCCCceeEEEEeCC
Q psy9704 2 CTSLLISGRNVHNVMEMVGIEGLT-YAGNHGLEIIHPDGSR----FVHPIPTECASIYILRTAFGLDWTERVKIIYAGDD 76 (116)
Q Consensus 2 ~~vaIVSGR~~~~l~~~l~~~~~~-~aG~HG~e~~~~~g~~----~~~~~~~~~a~~~~l~~~~g~~~~~~~~pv~iGDD 76 (116)
++++|||+.....++.++...++. +..+ =+... .++.. ...+.....+.. .+... +. ..+|+||.
T Consensus 84 ~~~~IvS~~~~~~~~~~l~~~gl~~~f~~-~~~~~-~~~~i~~~~~~~p~~k~~~l~-~~~~~------~~-~~v~iGDs 153 (205)
T PRK13582 84 FQVVILSDTFYEFAGPLMRQLGWPTLFCH-SLEVD-EDGMITGYDLRQPDGKRQAVK-ALKSL------GY-RVIAAGDS 153 (205)
T ss_pred CCEEEEeCCcHHHHHHHHHHcCCchhhcc-eEEEC-CCCeEECccccccchHHHHHH-HHHHh------CC-eEEEEeCC
Confidence 478999999999888886544432 1111 01110 01110 011111100111 11211 23 68999999
Q ss_pred CccHHHHHhhhCCCcEEEEcCCCC-CCcccee-ecCCCCCC
Q psy9704 77 VTDEDAMEALKGMAATFRVTQSQI-VKTAAER-RLPSKPWI 115 (116)
Q Consensus 77 ~TDEdaF~al~~~g~~i~VG~~~~-~~T~A~~-~l~~~~ev 115 (116)
.+|-.+.++.. .++.++..+. ....+.+ .++++.++
T Consensus 154 ~~D~~~~~aa~---~~v~~~~~~~~~~~~~~~~~~~~~~el 191 (205)
T PRK13582 154 YNDTTMLGEAD---AGILFRPPANVIAEFPQFPAVHTYDEL 191 (205)
T ss_pred HHHHHHHHhCC---CCEEECCCHHHHHhCCcccccCCHHHH
Confidence 99987777663 3555654321 0112333 56666543
No 83
>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional
Probab=69.01 E-value=6.7 Score=34.88 Aligned_cols=38 Identities=13% Similarity=0.114 Sum_probs=30.2
Q ss_pred ceEEEEcCCCHhhHHHhcCCCC--ccEEeccCceeecCCC
Q psy9704 2 CTSLLISGRNVHNVMEMVGIEG--LTYAGNHGLEIIHPDG 39 (116)
Q Consensus 2 ~~vaIVSGR~~~~l~~~l~~~~--~~~aG~HG~e~~~~~g 39 (116)
+.++|.|||+...+..++...+ .+++++.|+.+..+++
T Consensus 450 I~~VIATGRs~~~i~~l~~~Lgl~~~~I~eNGA~I~~~~~ 489 (694)
T PRK14502 450 LPLVFCSAKTMGEQDLYRNELGIKDPFITENGGAIFIPKD 489 (694)
T ss_pred CeEEEEeCCCHHHHHHHHHHcCCCCeEEEcCCCEEEECCC
Confidence 5799999999998887765443 3599999999887654
No 84
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=68.93 E-value=35 Score=25.74 Aligned_cols=83 Identities=13% Similarity=0.024 Sum_probs=42.3
Q ss_pred ceEEEEcCCCHhhHHHhcCC---CCccEEeccCceeecCCCceecCCCcHHHHHHHHHHHhCCCCCCCceeEEEEeCCCc
Q psy9704 2 CTSLLISGRNVHNVMEMVGI---EGLTYAGNHGLEIIHPDGSRFVHPIPTECASIYILRTAFGLDWTERVKIIYAGDDVT 78 (116)
Q Consensus 2 ~~vaIVSGR~~~~l~~~l~~---~~~~~aG~HG~e~~~~~g~~~~~~~~~~~a~~~~l~~~~g~~~~~~~~pv~iGDD~T 78 (116)
++++|+|+.+...++..+.. .++..-.-.+.+. .....|.+. .....++ ..|+. ... -.+||||-.+
T Consensus 118 ~~l~I~T~~~~~~~~~~l~~~~l~~~~~d~i~~~~~-----~~~~KP~p~--~~~~a~~-~l~~~-~~~-e~l~IGDs~~ 187 (267)
T PRK13478 118 IKIGSTTGYTREMMDVVVPLAAAQGYRPDHVVTTDD-----VPAGRPYPW--MALKNAI-ELGVY-DVA-ACVKVDDTVP 187 (267)
T ss_pred CEEEEEcCCcHHHHHHHHHHHhhcCCCceEEEcCCc-----CCCCCCChH--HHHHHHH-HcCCC-CCc-ceEEEcCcHH
Confidence 58999999999887766642 2221101111111 001122222 1222333 23432 123 5799999887
Q ss_pred cHHHHHhhhCCCc-EEEEcC
Q psy9704 79 DEDAMEALKGMAA-TFRVTQ 97 (116)
Q Consensus 79 DEdaF~al~~~g~-~i~VG~ 97 (116)
| +++.+..|+ +|.|..
T Consensus 188 D---i~aA~~aG~~~i~v~~ 204 (267)
T PRK13478 188 G---IEEGLNAGMWTVGVIL 204 (267)
T ss_pred H---HHHHHHCCCEEEEEcc
Confidence 6 555555676 777743
No 85
>PLN03243 haloacid dehalogenase-like hydrolase; Provisional
Probab=68.17 E-value=11 Score=28.89 Aligned_cols=100 Identities=14% Similarity=0.111 Sum_probs=50.8
Q ss_pred ceEEEEcCCCHhhHHHhcCCCCcc--EEeccCceeecCCCceecCCCcHHHHHHHHHHHhCCCCCCCceeEEEEeCCCcc
Q psy9704 2 CTSLLISGRNVHNVMEMVGIEGLT--YAGNHGLEIIHPDGSRFVHPIPTECASIYILRTAFGLDWTERVKIIYAGDDVTD 79 (116)
Q Consensus 2 ~~vaIVSGR~~~~l~~~l~~~~~~--~aG~HG~e~~~~~g~~~~~~~~~~~a~~~~l~~~~g~~~~~~~~pv~iGDD~TD 79 (116)
++++|+|..+...++..+...++. +-.-.+.+- .....|.++ .....++ ..++ ... ..+||||..+|
T Consensus 126 ~~l~I~Tn~~~~~~~~~l~~~gl~~~Fd~ii~~~d-----~~~~KP~Pe--~~~~a~~-~l~~--~p~-~~l~IgDs~~D 194 (260)
T PLN03243 126 IPIAVASTRPRRYLERAIEAVGMEGFFSVVLAAED-----VYRGKPDPE--MFMYAAE-RLGF--IPE-RCIVFGNSNSS 194 (260)
T ss_pred CEEEEEeCcCHHHHHHHHHHcCCHhhCcEEEeccc-----CCCCCCCHH--HHHHHHH-HhCC--ChH-HeEEEcCCHHH
Confidence 689999999988888776543321 111111110 001122222 1222222 2332 223 57999999765
Q ss_pred HHHHHhhhCCCc-EEEEcC-CC-CCCccceeecCCCCCC
Q psy9704 80 EDAMEALKGMAA-TFRVTQ-SQ-IVKTAAERRLPSKPWI 115 (116)
Q Consensus 80 EdaF~al~~~g~-~i~VG~-~~-~~~T~A~~~l~~~~ev 115 (116)
+++....|+ +|.|.. .+ .....|.|.+.++.++
T Consensus 195 ---i~aA~~aG~~~i~v~g~~~~~~l~~ad~vi~~~~el 230 (260)
T PLN03243 195 ---VEAAHDGCMKCVAVAGKHPVYELSAGDLVVRRLDDL 230 (260)
T ss_pred ---HHHHHHcCCEEEEEecCCchhhhccCCEEeCCHHHH
Confidence 555556666 666632 11 1123467777776654
No 86
>PTZ00174 phosphomannomutase; Provisional
Probab=65.73 E-value=5.1 Score=30.22 Aligned_cols=26 Identities=15% Similarity=0.316 Sum_probs=20.7
Q ss_pred eEEEEeC----CCccHHHHHhhhCCCcEEE
Q psy9704 69 KIIYAGD----DVTDEDAMEALKGMAATFR 94 (116)
Q Consensus 69 ~pv~iGD----D~TDEdaF~al~~~g~~i~ 94 (116)
-.++||| ..+|.+||+..+-.|.+|.
T Consensus 202 eviafGD~~~~~~NDieMl~~~~~~g~~v~ 231 (247)
T PTZ00174 202 EIHFFGDKTFEGGNDYEIYNDPRTIGHSVK 231 (247)
T ss_pred hEEEEcccCCCCCCcHhhhhcCCCceEEeC
Confidence 6799999 9999999997655555544
No 87
>PLN02940 riboflavin kinase
Probab=65.25 E-value=32 Score=27.98 Aligned_cols=96 Identities=14% Similarity=0.140 Sum_probs=52.0
Q ss_pred ceEEEEcCCCHhhHHHhcC-CCCc------cEEeccCceeecCCCceecCCCcHHHHHHHHHHHhCCCCCCCceeEEEEe
Q psy9704 2 CTSLLISGRNVHNVMEMVG-IEGL------TYAGNHGLEIIHPDGSRFVHPIPTECASIYILRTAFGLDWTERVKIIYAG 74 (116)
Q Consensus 2 ~~vaIVSGR~~~~l~~~l~-~~~~------~~aG~HG~e~~~~~g~~~~~~~~~~~a~~~~l~~~~g~~~~~~~~pv~iG 74 (116)
++++|+|+.+...++..+. ..++ .+.+++ .....|.++ .....++ ..+++ .. ..+|||
T Consensus 110 ~~l~IvTn~~~~~~~~~l~~~~gl~~~Fd~ii~~d~---------v~~~KP~p~--~~~~a~~-~lgv~--p~-~~l~VG 174 (382)
T PLN02940 110 VPMALASNSPRANIEAKISCHQGWKESFSVIVGGDE---------VEKGKPSPD--IFLEAAK-RLNVE--PS-NCLVIE 174 (382)
T ss_pred CcEEEEeCCcHHHHHHHHHhccChHhhCCEEEehhh---------cCCCCCCHH--HHHHHHH-HcCCC--hh-HEEEEe
Confidence 5799999999888776654 2222 111111 001122222 1222222 23322 23 579999
Q ss_pred CCCccHHHHHhhhCCCc-EEEEcCCC---CCCccceeecCCCCCC
Q psy9704 75 DDVTDEDAMEALKGMAA-TFRVTQSQ---IVKTAAERRLPSKPWI 115 (116)
Q Consensus 75 DD~TDEdaF~al~~~g~-~i~VG~~~---~~~T~A~~~l~~~~ev 115 (116)
|..+| ..+....|+ +|.|.... ...+.|.+.++++.++
T Consensus 175 Ds~~D---i~aA~~aGi~~I~v~~g~~~~~~~~~ad~~i~sl~el 216 (382)
T PLN02940 175 DSLPG---VMAGKAAGMEVIAVPSIPKQTHLYSSADEVINSLLDL 216 (382)
T ss_pred CCHHH---HHHHHHcCCEEEEECCCCcchhhccCccEEeCCHhHc
Confidence 99875 455556677 78885431 0124577778877665
No 88
>TIGR01497 kdpB K+-transporting ATPase, B subunit. One sequence is apparently mis-annotated in the primary literature, but properly annotated by TIGR.
Probab=65.11 E-value=34 Score=30.35 Aligned_cols=74 Identities=14% Similarity=0.258 Sum_probs=44.3
Q ss_pred ceEEEEcCCCHhhHHHhcCCCCccEEeccCceeecCCCceecCCCcHHHHHHHHHHHhCCCCCCCceeEEEEeCCCccHH
Q psy9704 2 CTSLLISGRNVHNVMEMVGIEGLTYAGNHGLEIIHPDGSRFVHPIPTECASIYILRTAFGLDWTERVKIIYAGDDVTDED 81 (116)
Q Consensus 2 ~~vaIVSGR~~~~l~~~l~~~~~~~aG~HG~e~~~~~g~~~~~~~~~~~a~~~~l~~~~g~~~~~~~~pv~iGDD~TDEd 81 (116)
+++.+|||-......+.-...++.- . +..-.+++ -.++.-..+- .++ .+.|+||+++|-.
T Consensus 463 i~v~miTGD~~~ta~~iA~~lGI~~-------v-------~a~~~Ped-K~~~v~~lq~----~g~-~VamvGDG~NDap 522 (675)
T TIGR01497 463 IKTIMITGDNRLTAAAIAAEAGVDD-------F-------IAEATPED-KIALIRQEQA----EGK-LVAMTGDGTNDAP 522 (675)
T ss_pred CEEEEEcCCCHHHHHHHHHHcCCCE-------E-------EcCCCHHH-HHHHHHHHHH----cCC-eEEEECCCcchHH
Confidence 5789999999988887765555420 0 11111121 1111111111 134 7899999999998
Q ss_pred HHHhhhCCCcEEEEcCC
Q psy9704 82 AMEALKGMAATFRVTQS 98 (116)
Q Consensus 82 aF~al~~~g~~i~VG~~ 98 (116)
+++.. +.+|-+|++
T Consensus 523 AL~~A---dvGiAm~~g 536 (675)
T TIGR01497 523 ALAQA---DVGVAMNSG 536 (675)
T ss_pred HHHhC---CEeEEeCCC
Confidence 88755 677888764
No 89
>TIGR01533 lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) family. which in turn belongs to the haloacid dehalogenase (HAD) superfamily of aspartate-dependent hydrolases. Members are found on the outer membrane of Gram-negative bacteria and the cytoplasmic membrane of Gram-positive bacteria. Most members have classic lipoprotein signal sequences. A critical role of this 5'-nucleotidase in Haemophilus influenzae is the degradation of external riboside in order to allow transport into the cell. An earlier suggested role in hemin transport is no longer current. This enzyme may also have other physiologically significant roles.
Probab=64.90 E-value=17 Score=28.48 Aligned_cols=16 Identities=25% Similarity=0.385 Sum_probs=13.3
Q ss_pred eEEEEeCCCccHHHHH
Q psy9704 69 KIIYAGDDVTDEDAME 84 (116)
Q Consensus 69 ~pv~iGDD~TDEdaF~ 84 (116)
.+++|||-..|-..|.
T Consensus 190 Ivl~vGD~~~Df~~~~ 205 (266)
T TIGR01533 190 IVLLFGDNLLDFDDFF 205 (266)
T ss_pred EEEEECCCHHHhhhhh
Confidence 6899999999986653
No 90
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=64.37 E-value=26 Score=24.92 Aligned_cols=82 Identities=18% Similarity=0.276 Sum_probs=42.6
Q ss_pred ceEEEEcCCCHhhHHHhcCCCCcc--EEeccCceeecCCCceecCCCcHHHHHHHHHHHhCCCCCCCceeEEEEeCCCcc
Q psy9704 2 CTSLLISGRNVHNVMEMVGIEGLT--YAGNHGLEIIHPDGSRFVHPIPTECASIYILRTAFGLDWTERVKIIYAGDDVTD 79 (116)
Q Consensus 2 ~~vaIVSGR~~~~l~~~l~~~~~~--~aG~HG~e~~~~~g~~~~~~~~~~~a~~~~l~~~~g~~~~~~~~pv~iGDD~TD 79 (116)
.+++|+|+-+...++..+...++. +-.-.+. +......|.++ .-+..++ ..|++ .. ..+||||..+|
T Consensus 109 ~~~~i~Sn~~~~~~~~~l~~~gl~~~fd~i~~s-----~~~~~~KP~~~--~~~~~~~-~~~~~--p~-~~~~vgD~~~D 177 (198)
T TIGR01428 109 YRLAILSNGSPAMLKSLVKHAGLDDPFDAVLSA-----DAVRAYKPAPQ--VYQLALE-ALGVP--PD-EVLFVASNPWD 177 (198)
T ss_pred CeEEEEeCCCHHHHHHHHHHCCChhhhheeEeh-----hhcCCCCCCHH--HHHHHHH-HhCCC--hh-hEEEEeCCHHH
Confidence 679999999988887776443331 1000000 00001122222 2223333 23332 22 57999999866
Q ss_pred HHHHHhhhCCCc-EEEEcC
Q psy9704 80 EDAMEALKGMAA-TFRVTQ 97 (116)
Q Consensus 80 EdaF~al~~~g~-~i~VG~ 97 (116)
+.+....|+ +|.|-.
T Consensus 178 ---i~~A~~~G~~~i~v~r 193 (198)
T TIGR01428 178 ---LGGAKKFGFKTAWVNR 193 (198)
T ss_pred ---HHHHHHCCCcEEEecC
Confidence 344556677 888843
No 91
>PLN02887 hydrolase family protein
Probab=63.88 E-value=10 Score=32.84 Aligned_cols=39 Identities=15% Similarity=0.266 Sum_probs=28.3
Q ss_pred ceEEEEcCCCHhhHHHhcCCCCc-----------cEEeccCceeecCCCc
Q psy9704 2 CTSLLISGRNVHNVMEMVGIEGL-----------TYAGNHGLEIIHPDGS 40 (116)
Q Consensus 2 ~~vaIVSGR~~~~l~~~l~~~~~-----------~~aG~HG~e~~~~~g~ 40 (116)
..++|.|||+...+...+...++ +++++.|+.+...+++
T Consensus 342 i~~vIATGR~~~~i~~~l~~L~l~~~~~~I~~~~p~I~~NGA~I~d~~g~ 391 (580)
T PLN02887 342 VKVVIATGKARPAVIDILKMVDLAGKDGIISESSPGVFLQGLLVYGRQGR 391 (580)
T ss_pred CeEEEEcCCCHHHHHHHHHHhCcccccceEeecccEEeecCeEEEECCCc
Confidence 57999999999988877643322 3566789988754554
No 92
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=61.69 E-value=37 Score=24.06 Aligned_cols=86 Identities=21% Similarity=0.193 Sum_probs=42.7
Q ss_pred ceEEEEcCCCHhhHHHhcCCCCcc-EEeccCceeecCCCceec----CCC--cHHH-HHHHHHHHhCCCCCCCceeEEEE
Q psy9704 2 CTSLLISGRNVHNVMEMVGIEGLT-YAGNHGLEIIHPDGSRFV----HPI--PTEC-ASIYILRTAFGLDWTERVKIIYA 73 (116)
Q Consensus 2 ~~vaIVSGR~~~~l~~~l~~~~~~-~aG~HG~e~~~~~g~~~~----~~~--~~~~-a~~~~l~~~~g~~~~~~~~pv~i 73 (116)
.+++|||+-...-++.++...++. +.++ -++.. .+|.... ... .... +....+. ..+++ .. ..+|+
T Consensus 104 ~~v~ivS~s~~~~v~~~~~~lg~~~~~~~-~l~~~-~~g~~~g~~~~~~~~g~~K~~~l~~~~~-~~~~~--~~-~~~~~ 177 (202)
T TIGR01490 104 HTIVLVSASLTILVKPLARILGIDNAIGT-RLEES-EDGIYTGNIDGNNCKGEGKVHALAELLA-EEQID--LK-DSYAY 177 (202)
T ss_pred CEEEEEeCCcHHHHHHHHHHcCCcceEec-ceEEc-CCCEEeCCccCCCCCChHHHHHHHHHHH-HcCCC--HH-HcEee
Confidence 579999999988777765433332 2222 01110 1111110 000 1111 1222222 22322 22 56899
Q ss_pred eCCCccHHHHHhhhCCCcEEEEc
Q psy9704 74 GDDVTDEDAMEALKGMAATFRVT 96 (116)
Q Consensus 74 GDD~TDEdaF~al~~~g~~i~VG 96 (116)
||..+|-.+++.+ |..+.|.
T Consensus 178 gDs~~D~~~~~~a---~~~~~v~ 197 (202)
T TIGR01490 178 GDSISDLPLLSLV---GHPYVVN 197 (202)
T ss_pred eCCcccHHHHHhC---CCcEEeC
Confidence 9999998888775 3445553
No 93
>TIGR01675 plant-AP plant acid phosphatase. This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.
Probab=59.61 E-value=18 Score=27.82 Aligned_cols=18 Identities=22% Similarity=0.307 Sum_probs=13.4
Q ss_pred ceEEEEcCCCHhh---HHHhc
Q psy9704 2 CTSLLISGRNVHN---VMEMV 19 (116)
Q Consensus 2 ~~vaIVSGR~~~~---l~~~l 19 (116)
+.|.++|||+... ..++|
T Consensus 137 ~~Vf~lTGR~e~~r~~T~~nL 157 (229)
T TIGR01675 137 IKIFLLSGRWEELRNATLDNL 157 (229)
T ss_pred CEEEEEcCCChHHHHHHHHHH
Confidence 5799999999755 44555
No 94
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=57.79 E-value=5.7 Score=27.57 Aligned_cols=77 Identities=19% Similarity=0.173 Sum_probs=40.7
Q ss_pred ceEEEEcCCCHhhHHHhcCCCCcc-EEeccCceeec-CCCcee----c--CC--CcHHHHHHHHHHHhCCCCCCCceeEE
Q psy9704 2 CTSLLISGRNVHNVMEMVGIEGLT-YAGNHGLEIIH-PDGSRF----V--HP--IPTECASIYILRTAFGLDWTERVKII 71 (116)
Q Consensus 2 ~~vaIVSGR~~~~l~~~l~~~~~~-~aG~HG~e~~~-~~g~~~----~--~~--~~~~~a~~~~l~~~~g~~~~~~~~pv 71 (116)
.+++|+||.....++.++...++. +.++. ... .+|... . .+ .....+.+..+. ..+++ .. ..+
T Consensus 90 ~~~~ivS~~~~~~i~~~~~~~g~~~~~~~~---~~~~~~g~~~g~~~~~~~~~~~~K~~~l~~~~~-~~~~~--~~-~~~ 162 (177)
T TIGR01488 90 IDTVIVSGGFDFFVEPVAEKLGIDDVFANR---LEFDDNGLLTGPIEGQVNPEGECKGKVLKELLE-ESKIT--LK-KII 162 (177)
T ss_pred CEEEEECCCcHHHHHHHHHHcCCchheeee---EEECCCCEEeCccCCcccCCcchHHHHHHHHHH-HhCCC--HH-HEE
Confidence 579999999999888887654432 22321 111 122111 0 01 111101222222 22322 23 679
Q ss_pred EEeCCCccHHHHHh
Q psy9704 72 YAGDDVTDEDAMEA 85 (116)
Q Consensus 72 ~iGDD~TDEdaF~a 85 (116)
|+||..+|-.++++
T Consensus 163 ~iGDs~~D~~~~~~ 176 (177)
T TIGR01488 163 AVGDSVNDLPMLKL 176 (177)
T ss_pred EEeCCHHHHHHHhc
Confidence 99999999998875
No 95
>PRK09449 dUMP phosphatase; Provisional
Probab=52.56 E-value=12 Score=27.13 Aligned_cols=44 Identities=14% Similarity=0.170 Sum_probs=28.1
Q ss_pred eEEEEeCCC-ccHHHHHhhhCCCc-EEEEcCCC--C-CCccceeecCCCCCC
Q psy9704 69 KIIYAGDDV-TDEDAMEALKGMAA-TFRVTQSQ--I-VKTAAERRLPSKPWI 115 (116)
Q Consensus 69 ~pv~iGDD~-TDEdaF~al~~~g~-~i~VG~~~--~-~~T~A~~~l~~~~ev 115 (116)
..+||||.. +| ..+.+..|+ +|.|.... . ....+.|.+.+++|+
T Consensus 170 ~~~~vgD~~~~D---i~~A~~aG~~~i~~~~~~~~~~~~~~~~~~i~~~~el 218 (224)
T PRK09449 170 RVLMVGDNLHSD---ILGGINAGIDTCWLNAHGREQPEGIAPTYQVSSLSEL 218 (224)
T ss_pred cEEEEcCCcHHH---HHHHHHCCCcEEEECCCCCCCCCCCCCeEEECCHHHH
Confidence 579999997 57 445556677 78885211 0 112467888877654
No 96
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=52.45 E-value=81 Score=22.27 Aligned_cols=90 Identities=12% Similarity=0.042 Sum_probs=44.1
Q ss_pred ceEEEEcCCCHhhHH---HhcCC--------CCccEEeccCceeecCCCceecCCCcHHH---HHHHHHHHhCCCCCCCc
Q psy9704 2 CTSLLISGRNVHNVM---EMVGI--------EGLTYAGNHGLEIIHPDGSRFVHPIPTEC---ASIYILRTAFGLDWTER 67 (116)
Q Consensus 2 ~~vaIVSGR~~~~l~---~~l~~--------~~~~~aG~HG~e~~~~~g~~~~~~~~~~~---a~~~~l~~~~g~~~~~~ 67 (116)
+.+.++|||+..... +|+.. +.-++..+-|.......++.. ...+.++ ..+..+. .+ +. ..
T Consensus 44 ~~ivy~TGRp~~~~~~t~~~l~~~~~~~~~lp~g~li~~~g~~~~~~~~e~i-~~~~~~~K~~~l~~i~~-~~--~~-~~ 118 (157)
T smart00775 44 YKILYLTARPIGQADRTRSYLSQIKQDGHNLPHGPVLLSPDRLFAALHREVI-SKKPEVFKIACLRDIKS-LF--PP-QG 118 (157)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHHhhhccccCCCceEEEcCCcchhhhhcccc-cCCHHHHHHHHHHHHHH-hc--CC-CC
Confidence 579999999988764 55532 223555555655532222211 1111111 1111222 11 11 12
Q ss_pred eeEEE--EeCCCccHHHHHhhhCC-CcEEEEcC
Q psy9704 68 VKIIY--AGDDVTDEDAMEALKGM-AATFRVTQ 97 (116)
Q Consensus 68 ~~pv~--iGDD~TDEdaF~al~~~-g~~i~VG~ 97 (116)
.|++ +|+--||-.+++.+.=- .-.+.|++
T Consensus 119 -~~f~~~~gn~~~D~~~y~~~gi~~~~i~~i~~ 150 (157)
T smart00775 119 -NPFYAGFGNRITDVISYSAVGIPPSRIFTINP 150 (157)
T ss_pred -CCEEEEeCCCchhHHHHHHcCCChhhEEEECC
Confidence 4555 56557899999887421 22455554
No 97
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=52.24 E-value=13 Score=25.93 Aligned_cols=33 Identities=15% Similarity=0.335 Sum_probs=22.0
Q ss_pred ceEEEEcCCCHhh---------------HHHhcCCCCccEEeccCceeecC
Q psy9704 2 CTSLLISGRNVHN---------------VMEMVGIEGLTYAGNHGLEIIHP 37 (116)
Q Consensus 2 ~~vaIVSGR~~~~---------------l~~~l~~~~~~~aG~HG~e~~~~ 37 (116)
+.+.++|||+... +.+||.--++.| |.+.++.|
T Consensus 41 ~~IiiaTGR~~~~~~~n~~~i~~~~~~~t~~wL~k~~ipY---d~l~~~kp 88 (126)
T TIGR01689 41 FEIVISSSRNMRTYEGNVGKINIHTLPIIILWLNQHNVPY---DEIYVGKP 88 (126)
T ss_pred CEEEEECCCCchhhhccccccchhhHHHHHHHHHHcCCCC---ceEEeCCC
Confidence 4689999998764 456665555555 55666554
No 98
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=52.04 E-value=12 Score=26.51 Aligned_cols=68 Identities=16% Similarity=0.223 Sum_probs=38.4
Q ss_pred ceEEEEcCCCHhhHHHhcCCCCc---cEEeccCceeecCCCceecCCCcHHHHHHHHHHHhCCCCCCCceeEEEEeCCCc
Q psy9704 2 CTSLLISGRNVHNVMEMVGIEGL---TYAGNHGLEIIHPDGSRFVHPIPTECASIYILRTAFGLDWTERVKIIYAGDDVT 78 (116)
Q Consensus 2 ~~vaIVSGR~~~~l~~~l~~~~~---~~aG~HG~e~~~~~g~~~~~~~~~~~a~~~~l~~~~g~~~~~~~~pv~iGDD~T 78 (116)
.+++|+||-............++ .+.++-- ..| ..-.....++. + ...+. .++|+||..+
T Consensus 144 i~~~i~TGD~~~~a~~~~~~lgi~~~~v~a~~~-----------~kP--~~k~~~~~i~~-l--~~~~~-~v~~vGDg~n 206 (215)
T PF00702_consen 144 IKVAILTGDNESTASAIAKQLGIFDSIVFARVI-----------GKP--EPKIFLRIIKE-L--QVKPG-EVAMVGDGVN 206 (215)
T ss_dssp EEEEEEESSEHHHHHHHHHHTTSCSEEEEESHE-----------TTT--HHHHHHHHHHH-H--TCTGG-GEEEEESSGG
T ss_pred cceeeeecccccccccccccccccccccccccc-----------ccc--cchhHHHHHHH-H--hcCCC-EEEEEccCHH
Confidence 57899999988877766644444 1222111 012 11111222221 1 11234 7899999999
Q ss_pred cHHHHHhh
Q psy9704 79 DEDAMEAL 86 (116)
Q Consensus 79 DEdaF~al 86 (116)
|-.|.++.
T Consensus 207 D~~al~~A 214 (215)
T PF00702_consen 207 DAPALKAA 214 (215)
T ss_dssp HHHHHHHS
T ss_pred HHHHHHhC
Confidence 99888764
No 99
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=51.41 E-value=14 Score=25.72 Aligned_cols=76 Identities=16% Similarity=0.158 Sum_probs=39.7
Q ss_pred ceEEEEcCCCHhhHHHhc---CCCCccEEeccCceeecCCCce----ecCCCc-HHH-HHHHH--HHHhCCCCCCCceeE
Q psy9704 2 CTSLLISGRNVHNVMEMV---GIEGLTYAGNHGLEIIHPDGSR----FVHPIP-TEC-ASIYI--LRTAFGLDWTERVKI 70 (116)
Q Consensus 2 ~~vaIVSGR~~~~l~~~l---~~~~~~~aG~HG~e~~~~~g~~----~~~~~~-~~~-a~~~~--l~~~~g~~~~~~~~p 70 (116)
.++.||||-....++.++ +.....+.++.- +. .++.. ...... ... +.... .... + .... ..
T Consensus 106 ~~v~IvS~~~~~~i~~~~~~~~i~~~~v~~~~~-~~--~~~~~~~~~~~~~~~~~K~~~l~~~~~~~~~-~--~~~~-~~ 178 (192)
T PF12710_consen 106 IKVVIVSGSPDEIIEPIAERLGIDDDNVIGNEL-FD--NGGGIFTGRITGSNCGGKAEALKELYIRDEE-D--IDPD-RV 178 (192)
T ss_dssp SEEEEEEEEEHHHHHHHHHHTTSSEGGEEEEEE-EC--TTCCEEEEEEEEEEESHHHHHHHHHHHHHHH-T--HTCC-EE
T ss_pred CEEEEECCCcHHHHHHHHHHcCCCceEEEEEee-ee--cccceeeeeECCCCCCcHHHHHHHHHHHhhc-C--CCCC-eE
Confidence 579999999998888886 444433444433 21 11110 000000 111 11111 0110 1 1123 78
Q ss_pred EEEeCCCccHHHHH
Q psy9704 71 IYAGDDVTDEDAME 84 (116)
Q Consensus 71 v~iGDD~TDEdaF~ 84 (116)
+|+||..+|-.+++
T Consensus 179 ~~iGDs~~D~~~lr 192 (192)
T PF12710_consen 179 IAIGDSINDLPMLR 192 (192)
T ss_dssp EEEESSGGGHHHHH
T ss_pred EEEECCHHHHHHhC
Confidence 99999999999885
No 100
>PRK14010 potassium-transporting ATPase subunit B; Provisional
Probab=48.58 E-value=82 Score=27.98 Aligned_cols=74 Identities=12% Similarity=0.164 Sum_probs=43.4
Q ss_pred ceEEEEcCCCHhhHHHhcCCCCccEEeccCceeecCCCceecCCCcHHHHHHHHHHHhCCCCCCCceeEEEEeCCCccHH
Q psy9704 2 CTSLLISGRNVHNVMEMVGIEGLTYAGNHGLEIIHPDGSRFVHPIPTECASIYILRTAFGLDWTERVKIIYAGDDVTDED 81 (116)
Q Consensus 2 ~~vaIVSGR~~~~l~~~l~~~~~~~aG~HG~e~~~~~g~~~~~~~~~~~a~~~~l~~~~g~~~~~~~~pv~iGDD~TDEd 81 (116)
.++.+|||-...+..+.-...++.- .+..-.+++ -.+..-..+- .|+ .+.|.||.++|=.
T Consensus 458 I~vvMiTGDn~~TA~aIA~elGI~~--------------v~A~~~Ped-K~~iV~~lQ~----~G~-~VaMtGDGvNDAP 517 (673)
T PRK14010 458 IETVMCTGDNELTAATIAKEAGVDR--------------FVAECKPED-KINVIREEQA----KGH-IVAMTGDGTNDAP 517 (673)
T ss_pred CeEEEECCCCHHHHHHHHHHcCCce--------------EEcCCCHHH-HHHHHHHHHh----CCC-EEEEECCChhhHH
Confidence 5678899988887776654444420 111111221 1112111111 245 7899999999988
Q ss_pred HHHhhhCCCcEEEEcCC
Q psy9704 82 AMEALKGMAATFRVTQS 98 (116)
Q Consensus 82 aF~al~~~g~~i~VG~~ 98 (116)
|.+.. .+||-+|.+
T Consensus 518 ALa~A---DVGIAMgsG 531 (673)
T PRK14010 518 ALAEA---NVGLAMNSG 531 (673)
T ss_pred HHHhC---CEEEEeCCC
Confidence 77655 678888865
No 101
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=47.58 E-value=30 Score=26.38 Aligned_cols=83 Identities=13% Similarity=0.080 Sum_probs=43.3
Q ss_pred ceEEEEcCCCHhhHHHhc---CCCCccEEeccCce-----eecCCCceecCCCcHHHHHHHHHHHhCCCCCCCceeEEEE
Q psy9704 2 CTSLLISGRNVHNVMEMV---GIEGLTYAGNHGLE-----IIHPDGSRFVHPIPTECASIYILRTAFGLDWTERVKIIYA 73 (116)
Q Consensus 2 ~~vaIVSGR~~~~l~~~l---~~~~~~~aG~HG~e-----~~~~~g~~~~~~~~~~~a~~~~l~~~~g~~~~~~~~pv~i 73 (116)
+.++|+|+|+....+..+ +..++++-...|.. +|. .+. ..+.+. .....|+. .+.+ ... ..+|+
T Consensus 204 ~~i~i~T~r~~~~~~~~l~~l~~~~~~f~~i~~~~~~~~~~~~-~~~--~kp~p~--~~~~~l~~-~~~~-~~~-~~~~v 275 (300)
T PHA02530 204 YEIIVVSGRDGVCEEDTVEWLRQTDIWFDDLIGRPPDMHFQRE-QGD--KRPDDV--VKEEIFWE-KIAP-KYD-VLLAV 275 (300)
T ss_pred CEEEEEeCCChhhHHHHHHHHHHcCCchhhhhCCcchhhhccc-CCC--CCCcHH--HHHHHHHH-Hhcc-Cce-EEEEE
Confidence 579999999998765544 44443444444444 111 111 112111 22233332 1211 112 68999
Q ss_pred eCCCccHHHHHhhhCCCc-EEEE
Q psy9704 74 GDDVTDEDAMEALKGMAA-TFRV 95 (116)
Q Consensus 74 GDD~TDEdaF~al~~~g~-~i~V 95 (116)
||..+|-.+-++ .|+ .|-|
T Consensus 276 gD~~~d~~~a~~---~Gi~~i~v 295 (300)
T PHA02530 276 DDRDQVVDMWRR---IGLECWQV 295 (300)
T ss_pred cCcHHHHHHHHH---hCCeEEEe
Confidence 999888665554 466 5665
No 102
>KOG3040|consensus
Probab=47.33 E-value=18 Score=28.22 Aligned_cols=25 Identities=28% Similarity=0.365 Sum_probs=16.2
Q ss_pred eEEEEeCCCccHHHHHhhhCCCc-EEEE
Q psy9704 69 KIIYAGDDVTDEDAMEALKGMAA-TFRV 95 (116)
Q Consensus 69 ~pv~iGDD~TDEdaF~al~~~g~-~i~V 95 (116)
..|+||||..| |.--|. ..|. +|.|
T Consensus 200 ~aVMIGDD~~d-DvgGAq-~~GMrgilV 225 (262)
T KOG3040|consen 200 EAVMIGDDLND-DVGGAQ-ACGMRGILV 225 (262)
T ss_pred HheEEcccccc-chhhHh-hhcceeEEe
Confidence 56999999999 443333 2444 5555
No 103
>PHA02597 30.2 hypothetical protein; Provisional
Probab=47.00 E-value=6.8 Score=28.00 Aligned_cols=44 Identities=11% Similarity=0.103 Sum_probs=27.3
Q ss_pred eEEEEeCCCccHHHHHhhhCC--Cc-EEEEcCCCC-CCccceeecCCCCCC
Q psy9704 69 KIIYAGDDVTDEDAMEALKGM--AA-TFRVTQSQI-VKTAAERRLPSKPWI 115 (116)
Q Consensus 69 ~pv~iGDD~TDEdaF~al~~~--g~-~i~VG~~~~-~~T~A~~~l~~~~ev 115 (116)
..+||||-.+| ..+.... |+ +|.|..+.. ..-...|++.|-.|+
T Consensus 147 ~~v~vgDs~~d---i~aA~~a~~Gi~~i~~~~~~~~~~~~~~~~~~~~~~~ 194 (197)
T PHA02597 147 VVCFVDDLAHN---LDAAHEALSQLPVIHMLRGERDHIPKLAHRVKSWNDI 194 (197)
T ss_pred cEEEeCCCHHH---HHHHHHHHcCCcEEEecchhhccccchhhhhccHHHH
Confidence 67999999888 5555555 77 788743211 011445777776553
No 104
>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase. This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PubMed:11751812).
Probab=46.16 E-value=17 Score=25.77 Aligned_cols=45 Identities=22% Similarity=0.201 Sum_probs=27.7
Q ss_pred eEEEEeCCCccHHHHHhhhCCCc-E-EEEcCCC--CC--CccceeecCCCCCCC
Q psy9704 69 KIIYAGDDVTDEDAMEALKGMAA-T-FRVTQSQ--IV--KTAAERRLPSKPWIP 116 (116)
Q Consensus 69 ~pv~iGDD~TDEdaF~al~~~g~-~-i~VG~~~--~~--~T~A~~~l~~~~ev~ 116 (116)
..+||||-.+|- .+.+..|+ + |.|..+. .. ...|++.+.++.+++
T Consensus 125 ~~v~VGDs~~Di---~aA~~aG~~~~i~v~~g~~~~~~~~~~ad~~i~~~~el~ 175 (176)
T TIGR00213 125 QSYMVGDKLEDM---QAGVAAKVKTNVLVRTGKPITPEAENIADWVLNSLADLP 175 (176)
T ss_pred hEEEEcCCHHHH---HHHHHCCCcEEEEEecCCcccccccccCCEEeccHHHhh
Confidence 579999987664 44445565 4 5663321 11 124889999988764
No 105
>TIGR01116 ATPase-IIA1_Ca sarco/endoplasmic reticulum calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1, the latter of which is modelled by TIGR01522.
Probab=45.92 E-value=20 Score=32.61 Aligned_cols=42 Identities=19% Similarity=0.251 Sum_probs=29.3
Q ss_pred CceeEEEEeCCCccHHHHHhhhCCCcEEEEcCCCC-CCccceeecCC
Q psy9704 66 ERVKIIYAGDDVTDEDAMEALKGMAATFRVTQSQI-VKTAAERRLPS 111 (116)
Q Consensus 66 ~~~~pv~iGDD~TDEdaF~al~~~g~~i~VG~~~~-~~T~A~~~l~~ 111 (116)
+. .+.|+||+.+|-.|++.. +++|.+|.+.+ ...+|+|-+.+
T Consensus 630 g~-~va~iGDG~ND~~alk~A---dVGia~g~g~~~ak~aAD~vl~d 672 (917)
T TIGR01116 630 GE-IVAMTGDGVNDAPALKKA---DIGIAMGSGTEVAKEASDMVLAD 672 (917)
T ss_pred CC-eEEEecCCcchHHHHHhC---CeeEECCCCcHHHHHhcCeEEcc
Confidence 44 778999999999988766 55777775421 12357777765
No 106
>PF12218 End_N_terminal: N terminal extension of bacteriophage endosialidase; InterPro: IPR024429 This entry represents the N-terminal extension domain of endosialidases which is approximately 70 amino acids in length. The two N-terminal domains (this domain and the beta propeller) assemble in the compact 'cap' whereas the C-terminal domain forms an extended tail-like structure. The very N-terminal part of the 'cap' region (residues 246 to 312) holds the only alpha-helix of the protein and is presumably the residual part of the deleted N-terminal head-binding domain [].; PDB: 3JU4_A 3GVL_A 3GVK_B 3GVJ_A 1V0E_B 1V0F_E.
Probab=45.55 E-value=30 Score=21.68 Aligned_cols=28 Identities=39% Similarity=0.617 Sum_probs=13.7
Q ss_pred EEeCCCccH-HHHHh-h---------hCCCcEEEEcCCC
Q psy9704 72 YAGDDVTDE-DAMEA-L---------KGMAATFRVTQSQ 99 (116)
Q Consensus 72 ~iGDD~TDE-daF~a-l---------~~~g~~i~VG~~~ 99 (116)
..||.+||. ++|-+ + .+.|.+.||..-|
T Consensus 1 A~GDGvtdDt~A~~a~l~a~~~g~~IDg~GlTykVs~lP 39 (67)
T PF12218_consen 1 AKGDGVTDDTAAITAALEASPVGRKIDGAGLTYKVSSLP 39 (67)
T ss_dssp ---CCCCE-HHHHHHHHHHS-TTS-EE-TT-EEEESS--
T ss_pred CCCccccCcHHHHHHHHhccCCCeEEecCCceEEEeeCc
Confidence 369999975 34444 2 2356799997653
No 107
>PRK08238 hypothetical protein; Validated
Probab=45.37 E-value=74 Score=26.91 Aligned_cols=77 Identities=22% Similarity=0.242 Sum_probs=44.3
Q ss_pred ceEEEEcCCCHhhHHHhcCCCCc--cEEeccCceeecCCCceecCCCcHHHHHHHHHHHhCCCCCCCceeEEEEeCCCcc
Q psy9704 2 CTSLLISGRNVHNVMEMVGIEGL--TYAGNHGLEIIHPDGSRFVHPIPTECASIYILRTAFGLDWTERVKIIYAGDDVTD 79 (116)
Q Consensus 2 ~~vaIVSGR~~~~l~~~l~~~~~--~~aG~HG~e~~~~~g~~~~~~~~~~~a~~~~l~~~~g~~~~~~~~pv~iGDD~TD 79 (116)
.+++|+|+.+...++..+...++ .+.|+.+... ..+... .+. +....+ .+ -.+|+||..+|
T Consensus 89 ~~v~LaTas~~~~a~~i~~~lGlFd~Vigsd~~~~--------~kg~~K---~~~-l~~~l~----~~-~~~yvGDS~~D 151 (479)
T PRK08238 89 RKLVLATASDERLAQAVAAHLGLFDGVFASDGTTN--------LKGAAK---AAA-LVEAFG----ER-GFDYAGNSAAD 151 (479)
T ss_pred CEEEEEeCCCHHHHHHHHHHcCCCCEEEeCCCccc--------cCCchH---HHH-HHHHhC----cc-CeeEecCCHHH
Confidence 57999999999988877654443 1233322221 111111 111 122222 11 24899999999
Q ss_pred HHHHHhhhCCCcEEEEcCC
Q psy9704 80 EDAMEALKGMAATFRVTQS 98 (116)
Q Consensus 80 EdaF~al~~~g~~i~VG~~ 98 (116)
-.+++.+. -.+.|+++
T Consensus 152 lp~~~~A~---~av~Vn~~ 167 (479)
T PRK08238 152 LPVWAAAR---RAIVVGAS 167 (479)
T ss_pred HHHHHhCC---CeEEECCC
Confidence 99998874 45677665
No 108
>PLN02811 hydrolase
Probab=42.91 E-value=20 Score=26.18 Aligned_cols=44 Identities=20% Similarity=0.191 Sum_probs=27.4
Q ss_pred eEEEEeCCCccHHHHHhhhCCCc-EEEEcCCCC---CCccceeecCCCCCC
Q psy9704 69 KIIYAGDDVTDEDAMEALKGMAA-TFRVTQSQI---VKTAAERRLPSKPWI 115 (116)
Q Consensus 69 ~pv~iGDD~TDEdaF~al~~~g~-~i~VG~~~~---~~T~A~~~l~~~~ev 115 (116)
-.+||||...| +++....|+ +|.|..+.. ....+.+.+.++.++
T Consensus 159 ~~v~IgDs~~d---i~aA~~aG~~~i~v~~~~~~~~~~~~~d~vi~~~~e~ 206 (220)
T PLN02811 159 KVLVFEDAPSG---VEAAKNAGMSVVMVPDPRLDKSYCKGADQVLSSLLDF 206 (220)
T ss_pred ceEEEeccHhh---HHHHHHCCCeEEEEeCCCCcHhhhhchhhHhcCHhhC
Confidence 57999999876 556666677 888854310 012355666666554
No 109
>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.
Probab=41.69 E-value=20 Score=24.68 Aligned_cols=24 Identities=17% Similarity=0.386 Sum_probs=17.3
Q ss_pred eEEEEeCCCccHHHHHhhhCCCc-EEEE
Q psy9704 69 KIIYAGDDVTDEDAMEALKGMAA-TFRV 95 (116)
Q Consensus 69 ~pv~iGDD~TDEdaF~al~~~g~-~i~V 95 (116)
-.+||||...| +++.+..|+ +|.|
T Consensus 120 e~i~IGDs~~D---i~~A~~~Gi~~v~i 144 (147)
T TIGR01656 120 RSLVVGDRLRD---LQAARNAGLAAVLL 144 (147)
T ss_pred HEEEEcCCHHH---HHHHHHCCCCEEEe
Confidence 57999998443 566667777 7766
No 110
>PRK09456 ?-D-glucose-1-phosphatase; Provisional
Probab=41.21 E-value=19 Score=25.86 Aligned_cols=27 Identities=19% Similarity=0.411 Sum_probs=20.9
Q ss_pred eEEEEeCCCccHHHHHhhhCCCc-EEEEcCC
Q psy9704 69 KIIYAGDDVTDEDAMEALKGMAA-TFRVTQS 98 (116)
Q Consensus 69 ~pv~iGDD~TDEdaF~al~~~g~-~i~VG~~ 98 (116)
-.+||||..+| +.+.+..|+ +|.+...
T Consensus 160 ~~l~vgD~~~d---i~aA~~aG~~~i~~~~~ 187 (199)
T PRK09456 160 DAVFFDDNADN---IEAANALGITSILVTDK 187 (199)
T ss_pred HeEEeCCCHHH---HHHHHHcCCEEEEecCC
Confidence 56999997654 777778888 8888654
No 111
>KOG4619|consensus
Probab=40.01 E-value=16 Score=24.41 Aligned_cols=13 Identities=46% Similarity=0.611 Sum_probs=11.0
Q ss_pred eE-EEEeCCCccHH
Q psy9704 69 KI-IYAGDDVTDED 81 (116)
Q Consensus 69 ~p-v~iGDD~TDEd 81 (116)
|| +|+|||..||.
T Consensus 87 fpliff~~~eddek 100 (105)
T KOG4619|consen 87 FPLIFFGDDEDDEK 100 (105)
T ss_pred cceeeecCCchhhh
Confidence 44 89999999985
No 112
>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672. Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.
Probab=39.95 E-value=34 Score=26.22 Aligned_cols=30 Identities=17% Similarity=0.046 Sum_probs=19.3
Q ss_pred eEEEEeCCCccHHHHHhhhCCCcEEEEcCC
Q psy9704 69 KIIYAGDDVTDEDAMEALKGMAATFRVTQS 98 (116)
Q Consensus 69 ~pv~iGDD~TDEdaF~al~~~g~~i~VG~~ 98 (116)
..+|+||...|-.+-+...-..+.+.+|..
T Consensus 186 i~i~vGDs~~DI~aAk~AGi~~I~V~~g~~ 215 (237)
T TIGR01672 186 IRIHYGDSDNDITAAKEAGARGIRILRASN 215 (237)
T ss_pred CeEEEeCCHHHHHHHHHCCCCEEEEEecCC
Confidence 469999999997666555333334555543
No 113
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=39.68 E-value=23 Score=24.59 Aligned_cols=25 Identities=24% Similarity=0.244 Sum_probs=17.9
Q ss_pred eEEEEeCCCccHHHHHhhhCCCc-EEEEc
Q psy9704 69 KIIYAGDDVTDEDAMEALKGMAA-TFRVT 96 (116)
Q Consensus 69 ~pv~iGDD~TDEdaF~al~~~g~-~i~VG 96 (116)
..|||||-.+| +.+.+..|. +|-|+
T Consensus 160 ~~v~vgD~~~d---i~aA~~aG~~~i~v~ 185 (185)
T TIGR01990 160 ECIGIEDAQAG---IEAIKAAGMFAVGVG 185 (185)
T ss_pred HeEEEecCHHH---HHHHHHcCCEEEecC
Confidence 57999998655 666666777 66663
No 114
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=39.11 E-value=47 Score=25.07 Aligned_cols=43 Identities=21% Similarity=0.116 Sum_probs=26.4
Q ss_pred eEEEEeCCC-ccHHHHHhhhCCCc-EEEEcCCCCC-----C--ccceeecCCCCC
Q psy9704 69 KIIYAGDDV-TDEDAMEALKGMAA-TFRVTQSQIV-----K--TAAERRLPSKPW 114 (116)
Q Consensus 69 ~pv~iGDD~-TDEdaF~al~~~g~-~i~VG~~~~~-----~--T~A~~~l~~~~e 114 (116)
..+||||.. ||-.+ .+..|+ +|.|..+... . -..+|.++++.+
T Consensus 197 ~~~~VGD~~~~Di~~---a~~~G~~~v~v~~G~~~~~~~~~~~~~pd~~v~~l~~ 248 (249)
T TIGR01457 197 ETLMVGDNYLTDIRA---GIDAGIDTLLVHTGVTKAEEVAGLPIAPTHVVSSLAE 248 (249)
T ss_pred cEEEECCCchhhHHH---HHHcCCcEEEEcCCCCCHHHHhcCCCCCCEEeCChhh
Confidence 689999996 88554 344566 8888543100 0 134567776655
No 115
>COG4087 Soluble P-type ATPase [General function prediction only]
Probab=39.05 E-value=32 Score=24.83 Aligned_cols=47 Identities=15% Similarity=0.100 Sum_probs=28.4
Q ss_pred CceeEEEEeCCCccHHHHHhhhCCCc-EEEEcCCCCC-CccceeecCCCCC
Q psy9704 66 ERVKIIYAGDDVTDEDAMEALKGMAA-TFRVTQSQIV-KTAAERRLPSKPW 114 (116)
Q Consensus 66 ~~~~pv~iGDD~TDEdaF~al~~~g~-~i~VG~~~~~-~T~A~~~l~~~~e 114 (116)
+. +.+++||..||+-|.+.. ..|+ +|.=+.-+.+ --.|++-+.++.|
T Consensus 93 ~~-k~vmVGnGaND~laLr~A-DlGI~tiq~e~v~~r~l~~ADvvik~i~e 141 (152)
T COG4087 93 YE-KVVMVGNGANDILALREA-DLGICTIQQEGVPERLLLTADVVLKEIAE 141 (152)
T ss_pred Cc-EEEEecCCcchHHHhhhc-ccceEEeccCCcchHHHhhchhhhhhHHH
Confidence 44 899999999999988876 3444 4432221111 1246666666543
No 116
>PRK06769 hypothetical protein; Validated
Probab=38.83 E-value=14 Score=26.32 Aligned_cols=26 Identities=31% Similarity=0.281 Sum_probs=17.3
Q ss_pred eEEEEeCCCccHHHHHhhhCCCc-EEEEcC
Q psy9704 69 KIIYAGDDVTDEDAMEALKGMAA-TFRVTQ 97 (116)
Q Consensus 69 ~pv~iGDD~TDEdaF~al~~~g~-~i~VG~ 97 (116)
-.+||||-.+| ..+....|+ +|.|..
T Consensus 112 ~~i~IGD~~~D---i~aA~~aGi~~i~v~~ 138 (173)
T PRK06769 112 QCAVIGDRWTD---IVAAAKVNATTILVRT 138 (173)
T ss_pred HeEEEcCCHHH---HHHHHHCCCeEEEEec
Confidence 57999997655 344445566 777743
No 117
>COG3769 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=38.24 E-value=1.6e+02 Score=23.20 Aligned_cols=38 Identities=24% Similarity=0.496 Sum_probs=29.9
Q ss_pred ceEEEEcCCCHhh---HHHhcCCCCccEEeccCceeecCCC
Q psy9704 2 CTSLLISGRNVHN---VMEMVGIEGLTYAGNHGLEIIHPDG 39 (116)
Q Consensus 2 ~~vaIVSGR~~~~---l~~~l~~~~~~~aG~HG~e~~~~~g 39 (116)
++|..+|-.++.. +.+-|+..+.+++++.|.-+..|-|
T Consensus 40 ~~Vi~~SSKT~aE~~~l~~~l~v~~~p~iaEnG~aI~~p~~ 80 (274)
T COG3769 40 VPVILCSSKTRAEMLYLQKSLGVQGLPLIAENGAAIYLPKG 80 (274)
T ss_pred CeEEEeccchHHHHHHHHHhcCCCCCceeecCCceEEeccc
Confidence 5778888887764 4556788889999999999877654
No 118
>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.
Probab=38.12 E-value=1.4e+02 Score=21.08 Aligned_cols=9 Identities=33% Similarity=0.774 Sum_probs=7.6
Q ss_pred eEEEEeCCC
Q psy9704 69 KIIYAGDDV 77 (116)
Q Consensus 69 ~pv~iGDD~ 77 (116)
-.+||||..
T Consensus 129 ~~v~VGD~~ 137 (166)
T TIGR01664 129 RSFYVGDAA 137 (166)
T ss_pred hcEEEECCC
Confidence 579999976
No 119
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=37.18 E-value=35 Score=24.24 Aligned_cols=76 Identities=18% Similarity=0.170 Sum_probs=40.8
Q ss_pred ceEEEEcCCC-HhhHHHhcCCCCccEEeccCceeecCCCceecCCCcHHHHHHHHHHHhCCCCCCCceeEEEEeCCC-cc
Q psy9704 2 CTSLLISGRN-VHNVMEMVGIEGLTYAGNHGLEIIHPDGSRFVHPIPTECASIYILRTAFGLDWTERVKIIYAGDDV-TD 79 (116)
Q Consensus 2 ~~vaIVSGR~-~~~l~~~l~~~~~~~aG~HG~e~~~~~g~~~~~~~~~~~a~~~~l~~~~g~~~~~~~~pv~iGDD~-TD 79 (116)
.+++|+|+.+ ...+..++...++.+.. +. ..|.+. .....++ ..+++ .. ..+||||.. ||
T Consensus 60 ~~l~I~Sn~~~~~~~~~~~~~~gl~~~~----------~~--~KP~p~--~~~~~l~-~~~~~--~~-~~l~IGDs~~~D 121 (170)
T TIGR01668 60 RKLLIVSNNAGEQRAKAVEKALGIPVLP----------HA--VKPPGC--AFRRAHP-EMGLT--SE-QVAVVGDRLFTD 121 (170)
T ss_pred CEEEEEeCCchHHHHHHHHHHcCCEEEc----------CC--CCCChH--HHHHHHH-HcCCC--HH-HEEEECCcchHH
Confidence 5789999988 45555444333332211 00 122122 2223333 23332 23 689999997 78
Q ss_pred HHHHHhhhCCCc-EEEEcCC
Q psy9704 80 EDAMEALKGMAA-TFRVTQS 98 (116)
Q Consensus 80 EdaF~al~~~g~-~i~VG~~ 98 (116)
+.+.+..|+ +|.|..+
T Consensus 122 ---i~aA~~aGi~~i~v~~g 138 (170)
T TIGR01668 122 ---VMGGNRNGSYTILVEPL 138 (170)
T ss_pred ---HHHHHHcCCeEEEEccC
Confidence 455556777 8888543
No 120
>TIGR03333 salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase. Members of this family are the methionine salvage enzyme MnxX, a member of the HAD-superfamily hydrolases, subfamily IB (see TIGR01488). Members are found in Bacillus subtilis and related species, paired with MtnW (TIGR03332). In most species that recycle methionine from methylthioadenosine, the single protein MtnC replaces the MtnW/MtnX pair. In B. subtilis, mtnX was first known as ykrX.
Probab=37.14 E-value=23 Score=25.83 Aligned_cols=20 Identities=20% Similarity=0.061 Sum_probs=16.4
Q ss_pred ceEEEEcCCCHhhHHHhcCC
Q psy9704 2 CTSLLISGRNVHNVMEMVGI 21 (116)
Q Consensus 2 ~~vaIVSGR~~~~l~~~l~~ 21 (116)
.+++|||+.....++.++..
T Consensus 87 ~~~~IvS~~~~~~i~~il~~ 106 (214)
T TIGR03333 87 IPFYVISGGMDFFVYPLLEG 106 (214)
T ss_pred CeEEEECCCcHHHHHHHHHh
Confidence 57999999999888877643
No 121
>PRK11590 hypothetical protein; Provisional
Probab=36.81 E-value=1.6e+02 Score=21.31 Aligned_cols=87 Identities=16% Similarity=0.087 Sum_probs=47.8
Q ss_pred ceEEEEcCCCHhhHHHhcCCCC----ccEEeccCceeecCCCceecCCC-cHHHHHHHHHHHhCCCCCCCceeEEEEeCC
Q psy9704 2 CTSLLISGRNVHNVMEMVGIEG----LTYAGNHGLEIIHPDGSRFVHPI-PTECASIYILRTAFGLDWTERVKIIYAGDD 76 (116)
Q Consensus 2 ~~vaIVSGR~~~~l~~~l~~~~----~~~aG~HG~e~~~~~g~~~~~~~-~~~~a~~~~l~~~~g~~~~~~~~pv~iGDD 76 (116)
.+++|||+....-++.++...+ ..++|.- ++.+. .|....... .++ ....++..++.++ . ...+-||.
T Consensus 113 ~~l~IvSas~~~~~~~il~~l~~~~~~~~i~t~-l~~~~-tg~~~g~~c~g~~--K~~~l~~~~~~~~--~-~~~aY~Ds 185 (211)
T PRK11590 113 ADVWLITGSPQPLVEQVYFDTPWLPRVNLIASQ-MQRRY-GGWVLTLRCLGHE--KVAQLERKIGTPL--R-LYSGYSDS 185 (211)
T ss_pred CEEEEEeCCcHHHHHHHHHHccccccCceEEEE-EEEEE-ccEECCccCCChH--HHHHHHHHhCCCc--c-eEEEecCC
Confidence 4799999999988887764322 3444443 44432 233221111 111 1122332233221 2 33788999
Q ss_pred CccHHHHHhhhCCCcEEEEcCC
Q psy9704 77 VTDEDAMEALKGMAATFRVTQS 98 (116)
Q Consensus 77 ~TDEdaF~al~~~g~~i~VG~~ 98 (116)
..|-.+++.+ +-.+.|.+.
T Consensus 186 ~~D~pmL~~a---~~~~~vnp~ 204 (211)
T PRK11590 186 KQDNPLLYFC---QHRWRVTPR 204 (211)
T ss_pred cccHHHHHhC---CCCEEECcc
Confidence 9999999887 335666554
No 122
>PRK08942 D,D-heptose 1,7-bisphosphate phosphatase; Validated
Probab=36.69 E-value=79 Score=22.28 Aligned_cols=25 Identities=20% Similarity=0.175 Sum_probs=16.8
Q ss_pred eEEEEeCCCccHHHHHhhhCCCc-EEEEc
Q psy9704 69 KIIYAGDDVTDEDAMEALKGMAA-TFRVT 96 (116)
Q Consensus 69 ~pv~iGDD~TDEdaF~al~~~g~-~i~VG 96 (116)
-.+||||..+|-. +....|+ +|.|.
T Consensus 122 ~~~~VgDs~~Di~---~A~~aG~~~i~v~ 147 (181)
T PRK08942 122 GSPMVGDSLRDLQ---AAAAAGVTPVLVR 147 (181)
T ss_pred hEEEEeCCHHHHH---HHHHCCCeEEEEc
Confidence 6799999987644 4444555 67674
No 123
>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase. The magnesium ATPases have been classified as type IIIB by a phylogenetic analysis.
Probab=36.19 E-value=39 Score=30.60 Aligned_cols=29 Identities=17% Similarity=0.339 Sum_probs=23.2
Q ss_pred CceeEEEEeCCCccHHHHHhhhCCCcEEEEcCC
Q psy9704 66 ERVKIIYAGDDVTDEDAMEALKGMAATFRVTQS 98 (116)
Q Consensus 66 ~~~~pv~iGDD~TDEdaF~al~~~g~~i~VG~~ 98 (116)
|. .+.|+||+++|-.|++.. .+||-+|.+
T Consensus 602 G~-vVam~GDGvNDapALk~A---dVGIAmg~g 630 (867)
T TIGR01524 602 GH-TVGFLGDGINDAPALRKA---DVGISVDTA 630 (867)
T ss_pred CC-EEEEECCCcccHHHHHhC---CEEEEeCCc
Confidence 45 789999999999888765 677778754
No 124
>PF06223 Phage_tail_T: Minor tail protein T; InterPro: IPR009350 This family represents the minor tail protein T of Lambda-like viruses and their prophage. The minor tail protein T is located at the distal end and is involved in the assembly of the initiator complex for tail polymerisation. The protein is essential for tail assembly but is not found in the mature virion [].
Probab=35.91 E-value=36 Score=23.18 Aligned_cols=24 Identities=25% Similarity=0.497 Sum_probs=19.8
Q ss_pred CCCccHHHHHhhhCCCcEEEEcCC
Q psy9704 75 DDVTDEDAMEALKGMAATFRVTQS 98 (116)
Q Consensus 75 DD~TDEdaF~al~~~g~~i~VG~~ 98 (116)
+..|||..+.+..+..++|+.|+.
T Consensus 76 ~E~tDe~LM~~a~gi~GGVRygPd 99 (103)
T PF06223_consen 76 EEMTDEELMAKAEGISGGVRYGPD 99 (103)
T ss_pred cCCCHHHHHHHhcccCCceeeCCC
Confidence 446999999888888889999875
No 125
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=35.45 E-value=38 Score=25.76 Aligned_cols=26 Identities=19% Similarity=0.365 Sum_probs=19.1
Q ss_pred eEEEEeCCC-ccHHHHHhhhCCCc-EEEEcC
Q psy9704 69 KIIYAGDDV-TDEDAMEALKGMAA-TFRVTQ 97 (116)
Q Consensus 69 ~pv~iGDD~-TDEdaF~al~~~g~-~i~VG~ 97 (116)
..+||||+. || +++.+..|+ +|.|..
T Consensus 198 ~~~~vGD~~~~D---i~~a~~~G~~~i~v~~ 225 (257)
T TIGR01458 198 EAVMIGDDCRDD---VGGAQDCGMRGIQVRT 225 (257)
T ss_pred hEEEECCCcHHH---HHHHHHcCCeEEEECC
Confidence 679999996 88 444556677 888843
No 126
>PF06888 Put_Phosphatase: Putative Phosphatase; InterPro: IPR016965 This group represents phosphatases related to PHOSPHO1 and PHOSPHO2 []. It includes plant phosphatases with homology to the haloacid dehalogenase (HAD) superfamily [, ]. PHOSPHO1 is a phosphoethanolamine/phosphocholine phosphatase [], while PHOSPHO2 has high activity toward pyridoxal 5'-phosphate (PLP), and it is active at much lower level toward pyrophosphate, phosphoethanolamine (PEA)and phosphocholine (PCho) []. ; GO: 0016791 phosphatase activity
Probab=35.42 E-value=25 Score=27.00 Aligned_cols=85 Identities=21% Similarity=0.206 Sum_probs=44.8
Q ss_pred ceEEEEcCCCHhhHHHhcCCCCc-----cEEeccCceeecCCCceecC--------CCcHHH----HHHHHHHHh--CCC
Q psy9704 2 CTSLLISGRNVHNVMEMVGIEGL-----TYAGNHGLEIIHPDGSRFVH--------PIPTEC----ASIYILRTA--FGL 62 (116)
Q Consensus 2 ~~vaIVSGR~~~~l~~~l~~~~~-----~~aG~HG~e~~~~~g~~~~~--------~~~~~~----a~~~~l~~~--~g~ 62 (116)
+.+.|||-=.--.|+.+|...++ .+..|....- .+|..... .-+.-+ ..+..+..+ .|.
T Consensus 90 ~~~~IiSDaNs~fI~~iL~~~gl~~~f~~I~TNpa~~~--~~G~l~v~pyh~h~C~~C~~NmCK~~il~~~~~~~~~~g~ 167 (234)
T PF06888_consen 90 FDLIIISDANSFFIETILEHHGLRDCFSEIFTNPACFD--ADGRLRVRPYHSHGCSLCPPNMCKGKILERLLQEQAQRGV 167 (234)
T ss_pred ceEEEEeCCcHhHHHHHHHhCCCccccceEEeCCceec--CCceEEEeCccCCCCCcCCCccchHHHHHHHHHHHhhcCC
Confidence 57889999888899999865433 2344443221 12321111 111111 222222221 121
Q ss_pred CCCCceeEEEEeCCCccHHHHHhhhCCCc
Q psy9704 63 DWTERVKIIYAGDDVTDEDAMEALKGMAA 91 (116)
Q Consensus 63 ~~~~~~~pv~iGDD~TDEdaF~al~~~g~ 91 (116)
..+ .+|||||..+|-=.-..|+...+
T Consensus 168 --~~~-rviYiGDG~nD~Cp~~~L~~~D~ 193 (234)
T PF06888_consen 168 --PYD-RVIYIGDGRNDFCPALRLRPRDV 193 (234)
T ss_pred --Ccc-eEEEECCCCCCcCcccccCCCCE
Confidence 234 78999999999655555555443
No 127
>PLN02645 phosphoglycolate phosphatase
Probab=35.40 E-value=35 Score=26.69 Aligned_cols=26 Identities=27% Similarity=0.208 Sum_probs=19.0
Q ss_pred eEEEEeCCC-ccHHHHHhhhCCCc-EEEEcC
Q psy9704 69 KIIYAGDDV-TDEDAMEALKGMAA-TFRVTQ 97 (116)
Q Consensus 69 ~pv~iGDD~-TDEdaF~al~~~g~-~i~VG~ 97 (116)
..+||||.. ||- +..+..|+ +|.|..
T Consensus 249 ~~~~VGD~~~~Di---~~A~~aG~~~ilV~~ 276 (311)
T PLN02645 249 QICMVGDRLDTDI---LFGQNGGCKTLLVLS 276 (311)
T ss_pred cEEEEcCCcHHHH---HHHHHcCCCEEEEcC
Confidence 689999997 884 34445576 888853
No 128
>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5. The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.
Probab=35.29 E-value=35 Score=26.90 Aligned_cols=27 Identities=15% Similarity=0.166 Sum_probs=19.7
Q ss_pred eEEEEeCCC-ccHHHHHhhhCCCc-EEEEcCC
Q psy9704 69 KIIYAGDDV-TDEDAMEALKGMAA-TFRVTQS 98 (116)
Q Consensus 69 ~pv~iGDD~-TDEdaF~al~~~g~-~i~VG~~ 98 (116)
..+||||+. ||-- ..+..|+ +|.|..+
T Consensus 265 ~~~mIGD~~~tDI~---ga~~~G~~silV~tG 293 (321)
T TIGR01456 265 ALYMVGDNPASDII---GAQNYGWFSCLVKTG 293 (321)
T ss_pred eEEEEcCChhhhhh---hHHhCCceEEEeccc
Confidence 689999998 8843 3344677 9999543
No 129
>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase. This model describes the plasma membrane proton efflux P-type ATPase found in plants, fungi, protozoa, slime molds and archaea. The best studied representative is from yeast.
Probab=34.14 E-value=41 Score=29.91 Aligned_cols=29 Identities=21% Similarity=0.278 Sum_probs=23.1
Q ss_pred CceeEEEEeCCCccHHHHHhhhCCCcEEEEcCC
Q psy9704 66 ERVKIIYAGDDVTDEDAMEALKGMAATFRVTQS 98 (116)
Q Consensus 66 ~~~~pv~iGDD~TDEdaF~al~~~g~~i~VG~~ 98 (116)
|. .+.|+||.++|-.|++.. .+||-+|.+
T Consensus 534 G~-~VamvGDGvNDapAL~~A---dVGIAm~~g 562 (755)
T TIGR01647 534 GH-LVGMTGDGVNDAPALKKA---DVGIAVAGA 562 (755)
T ss_pred CC-EEEEEcCCcccHHHHHhC---CeeEEecCC
Confidence 55 899999999999888765 566777754
No 130
>PF09890 DUF2117: Uncharacterized protein conserved in archaea (DUF2117); InterPro: IPR012032 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=33.94 E-value=25 Score=27.00 Aligned_cols=11 Identities=45% Similarity=0.570 Sum_probs=9.9
Q ss_pred eeEEEEeCCCc
Q psy9704 68 VKIIYAGDDVT 78 (116)
Q Consensus 68 ~~pv~iGDD~T 78 (116)
..+|-+|||+|
T Consensus 200 ~~viTVGDDTT 210 (215)
T PF09890_consen 200 DLVITVGDDTT 210 (215)
T ss_pred cEEEEECCCcc
Confidence 38899999998
No 131
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=33.93 E-value=39 Score=25.27 Aligned_cols=25 Identities=28% Similarity=0.302 Sum_probs=17.4
Q ss_pred eEEEEeCCC-ccHHHHHhhhCCCc-EEEEc
Q psy9704 69 KIIYAGDDV-TDEDAMEALKGMAA-TFRVT 96 (116)
Q Consensus 69 ~pv~iGDD~-TDEdaF~al~~~g~-~i~VG 96 (116)
..+||||.. ||-. ..+..|+ +|.|.
T Consensus 208 ~~~~IGD~~~~Di~---~A~~~G~~~i~v~ 234 (236)
T TIGR01460 208 RDVMVGDNLRTDIL---GAKNAGFDTLLVL 234 (236)
T ss_pred ceEEECCCcHHHHH---HHHHCCCcEEEEe
Confidence 459999997 7844 3445676 77773
No 132
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=32.82 E-value=46 Score=31.16 Aligned_cols=36 Identities=14% Similarity=0.146 Sum_probs=28.5
Q ss_pred ceEEEEcCCCHhhHHHhcCCC------CccEEeccCceeecC
Q psy9704 2 CTSLLISGRNVHNVMEMVGIE------GLTYAGNHGLEIIHP 37 (116)
Q Consensus 2 ~~vaIVSGR~~~~l~~~l~~~------~~~~aG~HG~e~~~~ 37 (116)
+-++++|||+++.+.+++... +=.++++=|-|+..+
T Consensus 805 igfv~aTGR~l~~~~~~l~~~~lp~~~PD~lI~~vGTeIyy~ 846 (1050)
T TIGR02468 805 SGFILSTSMTISEIQSFLKSGGLNPTDFDALICNSGSELYYP 846 (1050)
T ss_pred eEEEEEcCCCHHHHHHHHHhCCCCCCCCCEEEeCCCcceecc
Confidence 357899999999999988332 334799999999775
No 133
>PLN02423 phosphomannomutase
Probab=32.58 E-value=36 Score=25.73 Aligned_cols=27 Identities=26% Similarity=0.343 Sum_probs=20.2
Q ss_pred eEEEEeC----CCccHHHHHhhhCCCcEEEEcC
Q psy9704 69 KIIYAGD----DVTDEDAMEALKGMAATFRVTQ 97 (116)
Q Consensus 69 ~pv~iGD----D~TDEdaF~al~~~g~~i~VG~ 97 (116)
-.+++|| +.+|-+|++.- .-.+|.|-.
T Consensus 202 e~~aFGD~~~~~~ND~eMl~~~--~~~~~~~~~ 232 (245)
T PLN02423 202 EIHFFGDKTYEGGNDHEIFESE--RTIGHTVTS 232 (245)
T ss_pred eEEEEeccCCCCCCcHHHHhCC--CcceEEeCC
Confidence 6799999 89999988743 223777744
No 134
>PRK10671 copA copper exporting ATPase; Provisional
Probab=32.19 E-value=51 Score=29.52 Aligned_cols=27 Identities=15% Similarity=0.316 Sum_probs=22.2
Q ss_pred eEEEEeCCCccHHHHHhhhCCCcEEEEcCC
Q psy9704 69 KIIYAGDDVTDEDAMEALKGMAATFRVTQS 98 (116)
Q Consensus 69 ~pv~iGDD~TDEdaF~al~~~g~~i~VG~~ 98 (116)
.++|+||+.+|-.+++.. +++|.+|.+
T Consensus 714 ~v~~vGDg~nD~~al~~A---gvgia~g~g 740 (834)
T PRK10671 714 QVAMVGDGINDAPALAQA---DVGIAMGGG 740 (834)
T ss_pred EEEEEeCCHHHHHHHHhC---CeeEEecCC
Confidence 689999999998888765 568888764
No 135
>PF05412 Peptidase_C33: Equine arterivirus Nsp2-type cysteine proteinase; InterPro: IPR008743 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases corresponds to MEROPS peptidase family C33 (clan CA). The type example is equine arteritis virus Nsp2-type cysteine proteinase, which is involved in viral polyprotein processing [].; GO: 0016032 viral reproduction, 0019082 viral protein processing
Probab=31.04 E-value=43 Score=23.02 Aligned_cols=32 Identities=16% Similarity=0.195 Sum_probs=22.4
Q ss_pred CccHHHHHhhhCCCcEEEE-cCCCCCCccceeecC
Q psy9704 77 VTDEDAMEALKGMAATFRV-TQSQIVKTAAERRLP 110 (116)
Q Consensus 77 ~TDEdaF~al~~~g~~i~V-G~~~~~~T~A~~~l~ 110 (116)
.||||+++++.-..+.+-+ +.+ .=..|+|-|.
T Consensus 42 ~~dedl~~~iq~l~lPat~~~~~--~Cp~ArYv~~ 74 (108)
T PF05412_consen 42 ADDEDLYQVIQSLRLPATLDRNG--ACPHARYVLK 74 (108)
T ss_pred cChHHHHHHHHHccCceeccCCC--CCCCCEEEEE
Confidence 4899999999888775555 222 1467888764
No 136
>PRK10517 magnesium-transporting ATPase MgtA; Provisional
Probab=30.72 E-value=52 Score=30.03 Aligned_cols=29 Identities=21% Similarity=0.335 Sum_probs=23.5
Q ss_pred CceeEEEEeCCCccHHHHHhhhCCCcEEEEcCC
Q psy9704 66 ERVKIIYAGDDVTDEDAMEALKGMAATFRVTQS 98 (116)
Q Consensus 66 ~~~~pv~iGDD~TDEdaF~al~~~g~~i~VG~~ 98 (116)
|. .+.|+||.++|=.|.++. .+||-+|.+
T Consensus 637 G~-vVam~GDGvNDaPALk~A---DVGIAmg~g 665 (902)
T PRK10517 637 GH-VVGFMGDGINDAPALRAA---DIGISVDGA 665 (902)
T ss_pred CC-EEEEECCCcchHHHHHhC---CEEEEeCCc
Confidence 55 789999999998887765 677888754
No 137
>TIGR03360 VI_minor_1 type VI secretion-associated protein, VC_A0118 family. Members of this protein family, including VC_A0118 from Vibrio cholerae El Tor N16961, are restricted to a subset of bacteria with the type VI secretion system, and are encoded among the type VI-associated pathogenicity islands. However, many species with type VI secretion lack a member of this family. This lack suggests that members of this family may be targets rather than components of the type VI secretion system.
Probab=30.71 E-value=51 Score=24.66 Aligned_cols=28 Identities=36% Similarity=0.660 Sum_probs=23.5
Q ss_pred EEEEcCC---CHhhHHHhcCCCCccEEeccC
Q psy9704 4 SLLISGR---NVHNVMEMVGIEGLTYAGNHG 31 (116)
Q Consensus 4 vaIVSGR---~~~~l~~~l~~~~~~~aG~HG 31 (116)
..+-||| .++.|++|++...+.+-++++
T Consensus 130 ~vl~sgRGLpaI~~iK~l~~~~~l~l~~~~~ 160 (185)
T TIGR03360 130 LLLESGRGLPAIEEIKRLIGARRLTVRGDNG 160 (185)
T ss_pred eEEEcCCCChHHHHHHHHhCCCeEEEecCCC
Confidence 4678999 789999999999999876664
No 138
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=29.44 E-value=3.1e+02 Score=25.63 Aligned_cols=102 Identities=13% Similarity=0.143 Sum_probs=53.6
Q ss_pred ceEEEEcCCCHhhHHHhcCCCCccEEeccCcee-ecCCCceecCCCcHHHHHHHHHHHhCCCCCCCceeEEEEeCCCccH
Q psy9704 2 CTSLLISGRNVHNVMEMVGIEGLTYAGNHGLEI-IHPDGSRFVHPIPTECASIYILRTAFGLDWTERVKIIYAGDDVTDE 80 (116)
Q Consensus 2 ~~vaIVSGR~~~~l~~~l~~~~~~~aG~HG~e~-~~~~g~~~~~~~~~~~a~~~~l~~~~g~~~~~~~~pv~iGDD~TDE 80 (116)
++++|+|+...+.++..+...++.. +=++. ...+......|.++ ..++.++ .+++. .. ..+||||-.+|
T Consensus 178 ~~l~IvSn~~~~~~~~~L~~~gl~~---~~Fd~iv~~~~~~~~KP~Pe--~~~~a~~-~lgv~--p~-e~v~IgDs~~D- 247 (1057)
T PLN02919 178 LKVAVASSADRIKVDANLAAAGLPL---SMFDAIVSADAFENLKPAPD--IFLAAAK-ILGVP--TS-ECVVIEDALAG- 247 (1057)
T ss_pred CeEEEEeCCcHHHHHHHHHHcCCCh---hHCCEEEECcccccCCCCHH--HHHHHHH-HcCcC--cc-cEEEEcCCHHH-
Confidence 5799999999998887765433320 00010 01111111122222 2222333 23322 23 57999998755
Q ss_pred HHHHhhhCCCc-EEEEcCCCC----CCccceeecCCCCCC
Q psy9704 81 DAMEALKGMAA-TFRVTQSQI----VKTAAERRLPSKPWI 115 (116)
Q Consensus 81 daF~al~~~g~-~i~VG~~~~----~~T~A~~~l~~~~ev 115 (116)
.++.+..|. .|.|..... ....+.+.+.++.++
T Consensus 248 --i~AA~~aGm~~I~v~~~~~~~~L~~~~a~~vi~~l~el 285 (1057)
T PLN02919 248 --VQAARAAGMRCIAVTTTLSEEILKDAGPSLIRKDIGNI 285 (1057)
T ss_pred --HHHHHHcCCEEEEECCCCCHHHHhhCCCCEEECChHHC
Confidence 666667777 888864310 012456777777665
No 139
>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed
Probab=28.19 E-value=38 Score=24.74 Aligned_cols=20 Identities=15% Similarity=0.042 Sum_probs=17.0
Q ss_pred ceEEEEcCCCHhhHHHhcCC
Q psy9704 2 CTSLLISGRNVHNVMEMVGI 21 (116)
Q Consensus 2 ~~vaIVSGR~~~~l~~~l~~ 21 (116)
.+++|||+-....++.++..
T Consensus 91 ~~~~IvS~~~~~~i~~il~~ 110 (219)
T PRK09552 91 IPFYVVSGGMDFFVYPLLQG 110 (219)
T ss_pred CeEEEECCCcHHHHHHHHHH
Confidence 58999999999888887754
No 140
>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional
Probab=27.05 E-value=64 Score=28.90 Aligned_cols=27 Identities=19% Similarity=0.271 Sum_probs=20.6
Q ss_pred eEEEEeCCCccHHHHHhhhCCCcEEEEcCC
Q psy9704 69 KIIYAGDDVTDEDAMEALKGMAATFRVTQS 98 (116)
Q Consensus 69 ~pv~iGDD~TDEdaF~al~~~g~~i~VG~~ 98 (116)
..+.+||..+|-.||+.+ +.+|.|+..
T Consensus 633 iafalGDs~NDisMLe~A---g~gVAM~~~ 659 (694)
T PRK14502 633 HTFGLGDSENDYSMLETV---DSPILVQRP 659 (694)
T ss_pred EEEEcCCcHhhHHHHHhC---CceEEEcCC
Confidence 445569999999999876 567777653
No 141
>TIGR01715 phage_lam_T phage tail assembly protein T. This model represents a translation of the T gene in phage lambda and related phage. A translational frameshift from the upstream gene G into the frame of T produces a minor protein gpG-T, essential in tail assembly but not found in the mature virion.
Probab=26.98 E-value=54 Score=22.24 Aligned_cols=22 Identities=27% Similarity=0.314 Sum_probs=17.7
Q ss_pred CccHHHHHhhhCCCcEEEEcCC
Q psy9704 77 VTDEDAMEALKGMAATFRVTQS 98 (116)
Q Consensus 77 ~TDEdaF~al~~~g~~i~VG~~ 98 (116)
-|||..+....+..++||.|+.
T Consensus 77 ~tde~LM~~a~giaGGVR~gpd 98 (100)
T TIGR01715 77 DTDDMLMQKAAGIAGGVRYGPD 98 (100)
T ss_pred CCHHHHHHHhcccCCceeeCCC
Confidence 4788888887778889999864
No 142
>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional
Probab=26.83 E-value=60 Score=22.61 Aligned_cols=81 Identities=11% Similarity=0.163 Sum_probs=41.2
Q ss_pred ceEEEEcCCCHhhHHHhcCCCCcc--EEeccCceeecCCCceecCCCcHHHHHHHHHHHhCCCCCCCceeEEEEeCCCcc
Q psy9704 2 CTSLLISGRNVHNVMEMVGIEGLT--YAGNHGLEIIHPDGSRFVHPIPTECASIYILRTAFGLDWTERVKIIYAGDDVTD 79 (116)
Q Consensus 2 ~~vaIVSGR~~~~l~~~l~~~~~~--~aG~HG~e~~~~~g~~~~~~~~~~~a~~~~l~~~~g~~~~~~~~pv~iGDD~TD 79 (116)
.+++|+|+-+.+.++..+...++. +-.-.+.+ ......|.++ ...+.++ .++++ .. ..|||||-.+|
T Consensus 103 ~~l~I~T~~~~~~~~~~l~~~~l~~~fd~i~~~~-----~~~~~KP~p~--~~~~~~~-~~~~~--~~-~~l~igDs~~d 171 (188)
T PRK10725 103 RPMAVGTGSESAIAEALLAHLGLRRYFDAVVAAD-----DVQHHKPAPD--TFLRCAQ-LMGVQ--PT-QCVVFEDADFG 171 (188)
T ss_pred CCEEEEcCCchHHHHHHHHhCCcHhHceEEEehh-----hccCCCCChH--HHHHHHH-HcCCC--HH-HeEEEeccHhh
Confidence 367889998888887777554331 11111111 0011122222 1222222 23332 22 56999996555
Q ss_pred HHHHHhhhCCCc-EEEEc
Q psy9704 80 EDAMEALKGMAA-TFRVT 96 (116)
Q Consensus 80 EdaF~al~~~g~-~i~VG 96 (116)
+++....|+ +|.|+
T Consensus 172 ---i~aA~~aG~~~i~~~ 186 (188)
T PRK10725 172 ---IQAARAAGMDAVDVR 186 (188)
T ss_pred ---HHHHHHCCCEEEeec
Confidence 666667777 77764
No 143
>COG0384 Predicted epimerase, PhzC/PhzF homolog [General function prediction only]
Probab=26.55 E-value=1.3e+02 Score=23.92 Aligned_cols=36 Identities=14% Similarity=0.139 Sum_probs=26.3
Q ss_pred CCCCceeEE-EEeCCCccHHHHHhhhCCCc--EEEEcCC
Q psy9704 63 DWTERVKII-YAGDDVTDEDAMEALKGMAA--TFRVTQS 98 (116)
Q Consensus 63 ~~~~~~~pv-~iGDD~TDEdaF~al~~~g~--~i~VG~~ 98 (116)
+|.|.-..| .-.|+.||++|=+..++.+. |..|=+.
T Consensus 16 ~~~GNp~aVv~~a~~Lsd~~MQ~IA~e~n~SET~Fv~~~ 54 (291)
T COG0384 16 PFGGNPLAVVLDADGLSDEQMQAIAREFNLSETAFVLPP 54 (291)
T ss_pred CCCCCceEEEeCCCCCCHHHHHHHHHHhCCceeEEEcCC
Confidence 455553344 44899999999999999988 7777543
No 144
>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.
Probab=26.09 E-value=51 Score=23.49 Aligned_cols=22 Identities=14% Similarity=0.311 Sum_probs=18.1
Q ss_pred ceEEEEcCCCHhhHHHhcCCCC
Q psy9704 2 CTSLLISGRNVHNVMEMVGIEG 23 (116)
Q Consensus 2 ~~vaIVSGR~~~~l~~~l~~~~ 23 (116)
++++|+|+++...++.++...+
T Consensus 123 ~~~~i~T~~~~~~~~~~l~~~g 144 (197)
T TIGR01548 123 KGMAVVTGRPRKDAAKFLTTHG 144 (197)
T ss_pred CcEEEECCCCHHHHHHHHHHcC
Confidence 5799999999999988875443
No 145
>PRK15122 magnesium-transporting ATPase; Provisional
Probab=25.68 E-value=66 Score=29.35 Aligned_cols=29 Identities=17% Similarity=0.335 Sum_probs=23.3
Q ss_pred CceeEEEEeCCCccHHHHHhhhCCCcEEEEcCC
Q psy9704 66 ERVKIIYAGDDVTDEDAMEALKGMAATFRVTQS 98 (116)
Q Consensus 66 ~~~~pv~iGDD~TDEdaF~al~~~g~~i~VG~~ 98 (116)
|. .+.++||.++|=.|.+.. .+||-+|.+
T Consensus 637 G~-vVamtGDGvNDaPALk~A---DVGIAmg~g 665 (903)
T PRK15122 637 GH-TVGFLGDGINDAPALRDA---DVGISVDSG 665 (903)
T ss_pred CC-EEEEECCCchhHHHHHhC---CEEEEeCcc
Confidence 55 889999999999887765 677778754
No 146
>PRK11009 aphA acid phosphatase/phosphotransferase; Provisional
Probab=25.29 E-value=72 Score=24.44 Aligned_cols=26 Identities=27% Similarity=0.335 Sum_probs=18.5
Q ss_pred eEEEEeCCCccHHHHHhhhCCCc-EEEEcC
Q psy9704 69 KIIYAGDDVTDEDAMEALKGMAA-TFRVTQ 97 (116)
Q Consensus 69 ~pv~iGDD~TDEdaF~al~~~g~-~i~VG~ 97 (116)
..+|+||..+|-.+.+. .|+ +|+|-.
T Consensus 186 i~I~IGDs~~Di~aA~~---AGi~~I~v~~ 212 (237)
T PRK11009 186 IRIFYGDSDNDITAARE---AGARGIRILR 212 (237)
T ss_pred CeEEEcCCHHHHHHHHH---cCCcEEEEec
Confidence 47999999999665544 455 677743
No 147
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=25.17 E-value=78 Score=28.34 Aligned_cols=29 Identities=24% Similarity=0.402 Sum_probs=22.8
Q ss_pred CceeEEEEeCCCccHHHHHhhhCCCcEEEEcCC
Q psy9704 66 ERVKIIYAGDDVTDEDAMEALKGMAATFRVTQS 98 (116)
Q Consensus 66 ~~~~pv~iGDD~TDEdaF~al~~~g~~i~VG~~ 98 (116)
|+ .+.|+||..+|=.+.++. .+||-+|.+
T Consensus 599 g~-~VamVGDGINDAPALA~A---dVGiAmG~G 627 (713)
T COG2217 599 GR-KVAMVGDGINDAPALAAA---DVGIAMGSG 627 (713)
T ss_pred CC-EEEEEeCCchhHHHHhhc---CeeEeecCC
Confidence 55 899999999999887765 566777654
No 148
>PRK13225 phosphoglycolate phosphatase; Provisional
Probab=25.14 E-value=30 Score=26.79 Aligned_cols=98 Identities=17% Similarity=0.241 Sum_probs=50.5
Q ss_pred ceEEEEcCCCHhhHHHhcCCCCcc-EEeccCceeecCCCceecCCCcHHHHHHHHHHHhCCCCCCCceeEEEEeCCCccH
Q psy9704 2 CTSLLISGRNVHNVMEMVGIEGLT-YAGNHGLEIIHPDGSRFVHPIPTECASIYILRTAFGLDWTERVKIIYAGDDVTDE 80 (116)
Q Consensus 2 ~~vaIVSGR~~~~l~~~l~~~~~~-~aG~HG~e~~~~~g~~~~~~~~~~~a~~~~l~~~~g~~~~~~~~pv~iGDD~TDE 80 (116)
++++|+|+.+...++.++...++. +.-. +.. +.... + ..+ .....++ ..+++ .. ..+||||..+|-
T Consensus 159 i~laIvSn~~~~~~~~~L~~~gl~~~F~~----vi~--~~~~~-~-k~~-~~~~~l~-~~~~~--p~-~~l~IGDs~~Di 225 (273)
T PRK13225 159 LCLGILSSNSRQNIEAFLQRQGLRSLFSV----VQA--GTPIL-S-KRR-ALSQLVA-REGWQ--PA-AVMYVGDETRDV 225 (273)
T ss_pred CeEEEEeCCCHHHHHHHHHHcCChhheEE----EEe--cCCCC-C-CHH-HHHHHHH-HhCcC--hh-HEEEECCCHHHH
Confidence 579999999999888887544331 1000 000 00000 0 111 2222333 22321 23 579999997764
Q ss_pred HHHHhhhCCCc-EEEEcCC--CC---CCccceeecCCCCCC
Q psy9704 81 DAMEALKGMAA-TFRVTQS--QI---VKTAAERRLPSKPWI 115 (116)
Q Consensus 81 daF~al~~~g~-~i~VG~~--~~---~~T~A~~~l~~~~ev 115 (116)
.+....|+ +|.|..+ +. ....|.|.++++.++
T Consensus 226 ---~aA~~AG~~~I~v~~g~~~~~~l~~~~ad~~i~~~~eL 263 (273)
T PRK13225 226 ---EAARQVGLIAVAVTWGFNDRQSLVAACPDWLLETPSDL 263 (273)
T ss_pred ---HHHHHCCCeEEEEecCCCCHHHHHHCCCCEEECCHHHH
Confidence 33444565 6666432 10 023478888887665
No 149
>PRK01122 potassium-transporting ATPase subunit B; Provisional
Probab=24.96 E-value=77 Score=28.16 Aligned_cols=29 Identities=17% Similarity=0.290 Sum_probs=23.2
Q ss_pred CceeEEEEeCCCccHHHHHhhhCCCcEEEEcCC
Q psy9704 66 ERVKIIYAGDDVTDEDAMEALKGMAATFRVTQS 98 (116)
Q Consensus 66 ~~~~pv~iGDD~TDEdaF~al~~~g~~i~VG~~ 98 (116)
|+ .+.++||.++|=.|.+.. .+||-+|.+
T Consensus 507 G~-~VaMtGDGvNDAPALa~A---DVGIAMgsG 535 (679)
T PRK01122 507 GR-LVAMTGDGTNDAPALAQA---DVGVAMNSG 535 (679)
T ss_pred CC-eEEEECCCcchHHHHHhC---CEeEEeCCC
Confidence 55 789999999998887655 677888754
No 150
>COG4859 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.87 E-value=39 Score=22.79 Aligned_cols=12 Identities=33% Similarity=0.343 Sum_probs=9.9
Q ss_pred EEEeCCCccHHH
Q psy9704 71 IYAGDDVTDEDA 82 (116)
Q Consensus 71 v~iGDD~TDEda 82 (116)
+++|||.|||.+
T Consensus 45 r~f~gde~DeY~ 56 (105)
T COG4859 45 RFFSGDETDEYT 56 (105)
T ss_pred eEecCCcchhhc
Confidence 678888899875
No 151
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=24.65 E-value=54 Score=22.45 Aligned_cols=24 Identities=25% Similarity=0.365 Sum_probs=16.3
Q ss_pred eEEEEeCCCccHHHHHhhhCCCc-EEEE
Q psy9704 69 KIIYAGDDVTDEDAMEALKGMAA-TFRV 95 (116)
Q Consensus 69 ~pv~iGDD~TDEdaF~al~~~g~-~i~V 95 (116)
..+||||..+| .++....|+ +|.|
T Consensus 159 ~~~~vgD~~~d---i~aA~~~G~~~i~v 183 (183)
T TIGR01509 159 ECLFVDDSPAG---IEAAKAAGMHTVLV 183 (183)
T ss_pred eEEEEcCCHHH---HHHHHHcCCEEEeC
Confidence 57999998765 555556676 6543
No 152
>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).
Probab=23.72 E-value=53 Score=23.01 Aligned_cols=21 Identities=5% Similarity=0.156 Sum_probs=15.8
Q ss_pred eEEEEcCCCHhhHHHhcCCCC
Q psy9704 3 TSLLISGRNVHNVMEMVGIEG 23 (116)
Q Consensus 3 ~vaIVSGR~~~~l~~~l~~~~ 23 (116)
+++|+|..+...+...+...+
T Consensus 99 ~~~i~Tn~~~~~~~~~l~~~g 119 (184)
T TIGR01993 99 RKIIFTNGDRAHARRALNRLG 119 (184)
T ss_pred CEEEEeCCCHHHHHHHHHHcC
Confidence 578999988888887775443
No 153
>TIGR00093 pseudouridine synthase. This model identifies panels of pseudouridine synthase enzymes that RNA modifications involved in maturing the protein translation apparatus. Counts per genome vary: two in Staphylococcus aureus, three in Pseudomonas putida, four in E. coli, etc.
Probab=23.51 E-value=65 Score=21.83 Aligned_cols=29 Identities=28% Similarity=0.297 Sum_probs=23.8
Q ss_pred ceEEEEcCCCHhhHHHhcCCCCccEEeccC
Q psy9704 2 CTSLLISGRNVHNVMEMVGIEGLTYAGNHG 31 (116)
Q Consensus 2 ~~vaIVSGR~~~~l~~~l~~~~~~~aG~HG 31 (116)
..+.+.|||. .+|+.+|...+..++|.|=
T Consensus 79 l~~~l~tGR~-HQIR~~~~~lG~pI~g~~R 107 (128)
T TIGR00093 79 LRITLSEGRN-RQVRRMFAAVGFPVLRLHR 107 (128)
T ss_pred EEEEEeCCCC-HHHHHHHHHcCCeEeEEEE
Confidence 4678999995 6899999888888888763
No 154
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.
Probab=23.44 E-value=45 Score=23.83 Aligned_cols=101 Identities=11% Similarity=0.099 Sum_probs=48.4
Q ss_pred ceEEEEcCCCHhhHHHhcCCCCcc--EEeccCceeecCCCceecCCCcHHHHHHHHHHHhCCCCCCCceeEEEEeCCC-c
Q psy9704 2 CTSLLISGRNVHNVMEMVGIEGLT--YAGNHGLEIIHPDGSRFVHPIPTECASIYILRTAFGLDWTERVKIIYAGDDV-T 78 (116)
Q Consensus 2 ~~vaIVSGR~~~~l~~~l~~~~~~--~aG~HG~e~~~~~g~~~~~~~~~~~a~~~~l~~~~g~~~~~~~~pv~iGDD~-T 78 (116)
.+++|+|+...+.++..+...++. +-.-.+. ...+ ...|.+. ..+..++...+++ .. ..|||||.. +
T Consensus 113 ~~~~i~Sn~~~~~~~~~l~~~~l~~~fd~i~~~---~~~~--~~KP~~~--~~~~~~~~~~~~~--~~-~~v~igD~~~~ 182 (224)
T TIGR02254 113 FRLYIVTNGVRETQYKRLRKSGLFPFFDDIFVS---EDAG--IQKPDKE--IFNYALERMPKFS--KE-EVLMIGDSLTA 182 (224)
T ss_pred CcEEEEeCCchHHHHHHHHHCCcHhhcCEEEEc---CccC--CCCCCHH--HHHHHHHHhcCCC--ch-heEEECCCcHH
Confidence 368899998888777666433221 1000000 0001 1112111 2223333211322 23 579999997 5
Q ss_pred cHHHHHhhhCCCc-EEEEcCC--C-CCCccceeecCCCCCC
Q psy9704 79 DEDAMEALKGMAA-TFRVTQS--Q-IVKTAAERRLPSKPWI 115 (116)
Q Consensus 79 DEdaF~al~~~g~-~i~VG~~--~-~~~T~A~~~l~~~~ev 115 (116)
|- .+.+..|+ +|.+..+ + .....+.|.+.++.++
T Consensus 183 di---~~A~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~el 220 (224)
T TIGR02254 183 DI---KGGQNAGLDTCWMNPDMHPNPDDIIPTYEIRSLEEL 220 (224)
T ss_pred HH---HHHHHCCCcEEEECCCCCCCCCCCCCceEECCHHHH
Confidence 74 44455566 6666321 1 1122456777776654
No 155
>COG1210 GalU UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=23.12 E-value=61 Score=25.99 Aligned_cols=19 Identities=16% Similarity=0.385 Sum_probs=16.9
Q ss_pred eEEEEcCCCHhhHHHhcCC
Q psy9704 3 TSLLISGRNVHNVMEMVGI 21 (116)
Q Consensus 3 ~vaIVSGR~~~~l~~~l~~ 21 (116)
.+.|||||++..|+.+|..
T Consensus 52 ~i~iVTgr~K~~IeDhFD~ 70 (291)
T COG1210 52 EILIVTGRGKRAIEDHFDT 70 (291)
T ss_pred EEEEEecCCcchHHHhCcC
Confidence 5789999999999999864
No 156
>PF03332 PMM: Eukaryotic phosphomannomutase; InterPro: IPR005002 This enzyme (5.4.2.8 from EC) is involved in the synthesis of the GDP-mannose and dolichol-phosphate-mannose required for a number of critical mannosyl transfer reactions.; GO: 0004615 phosphomannomutase activity, 0019307 mannose biosynthetic process, 0005737 cytoplasm; PDB: 2I55_B 2I54_C 3F9R_A 2FUE_A 2FUC_A 2AMY_A 2Q4R_A.
Probab=23.08 E-value=80 Score=24.27 Aligned_cols=37 Identities=14% Similarity=0.242 Sum_probs=26.5
Q ss_pred ceEEEEcCCCHhhHHHhcC-CC---Cc-cEEeccCceeecCC
Q psy9704 2 CTSLLISGRNVHNVMEMVG-IE---GL-TYAGNHGLEIIHPD 38 (116)
Q Consensus 2 ~~vaIVSGR~~~~l~~~l~-~~---~~-~~aG~HG~e~~~~~ 38 (116)
+.||||||-++..+.+-+. .. .+ ++..+.|+.....+
T Consensus 12 ~~vgvVgGsd~~k~~eQl~~~~~~~~fdy~f~enG~~~y~~~ 53 (220)
T PF03332_consen 12 VPVGVVGGSDLPKIQEQLGGDDVLDNFDYVFPENGLVAYKNG 53 (220)
T ss_dssp SEEEEEESS-HHHHHHHHSTTTHHHH-SEEEEGGGTEEEETT
T ss_pred CeEEEEcchhHHHHHHHHcccchHhhCCeeecCCCCeEEECC
Confidence 6899999999999998884 32 22 47788888865433
No 157
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=22.77 E-value=65 Score=22.26 Aligned_cols=16 Identities=13% Similarity=0.148 Sum_probs=11.6
Q ss_pred eEEEEeCCCccHHHHH
Q psy9704 69 KIIYAGDDVTDEDAME 84 (116)
Q Consensus 69 ~pv~iGDD~TDEdaF~ 84 (116)
..+||||..+|-.+=+
T Consensus 161 ~~v~IgD~~~di~aA~ 176 (185)
T TIGR02009 161 ECVVFEDALAGVQAAR 176 (185)
T ss_pred HeEEEeCcHhhHHHHH
Confidence 5799999987754433
No 158
>TIGR01522 ATPase-IIA2_Ca golgi membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1 the former of which is modelled by TIGR01116.
Probab=21.17 E-value=1.1e+02 Score=27.82 Aligned_cols=41 Identities=27% Similarity=0.281 Sum_probs=28.0
Q ss_pred CceeEEEEeCCCccHHHHHhhhCCCcEEEEcC-CCCC-CccceeecC
Q psy9704 66 ERVKIIYAGDDVTDEDAMEALKGMAATFRVTQ-SQIV-KTAAERRLP 110 (116)
Q Consensus 66 ~~~~pv~iGDD~TDEdaF~al~~~g~~i~VG~-~~~~-~T~A~~~l~ 110 (116)
+. .+.|+||.++|-.|.+.. +++|.+|. +.+. ..+|++-|.
T Consensus 617 g~-~v~mvGDGvND~pAl~~A---dVGia~g~~g~~va~~aaDivl~ 659 (884)
T TIGR01522 617 GD-VVAMTGDGVNDAPALKLA---DIGVAMGQTGTDVAKEAADMILT 659 (884)
T ss_pred CC-EEEEECCCcccHHHHHhC---CeeEecCCCcCHHHHHhcCEEEc
Confidence 45 789999999999988776 46777773 2111 134677664
No 159
>PF06490 FleQ: Flagellar regulatory protein FleQ; InterPro: IPR010518 This domain is found at the N terminus of a subset of sigma54-dependent transcriptional activators that are involved in regulation of flagellar motility e.g. FleQ in Pseudomonas aeruginosa. It is clearly related to IPR001789 from INTERPRO, but lacks the conserved aspartate residue that undergoes phosphorylation in the classic two-component system response regulator (IPR001789 from INTERPRO).
Probab=20.88 E-value=1.5e+02 Score=19.66 Aligned_cols=31 Identities=13% Similarity=0.168 Sum_probs=24.4
Q ss_pred eEEEEcCCCH------hhHHHhcCCCCccEEeccCce
Q psy9704 3 TSLLISGRNV------HNVMEMVGIEGLTYAGNHGLE 33 (116)
Q Consensus 3 ~vaIVSGR~~------~~l~~~l~~~~~~~aG~HG~e 33 (116)
.++|++|..- +.|-++.+..|+.++|+|...
T Consensus 45 ~~~v~~g~~~~~~~~l~~l~~~~~~~Pvlllg~~~~~ 81 (109)
T PF06490_consen 45 ACAVILGSCSKLAELLKELLKWAPHIPVLLLGEHDSP 81 (109)
T ss_pred EEEEEecCchhHHHHHHHHHhhCCCCCEEEECCCCcc
Confidence 4778888877 556666677899999999877
No 160
>TIGR01106 ATPase-IIC_X-K sodium or proton efflux -- potassium uptake antiporter, P-type ATPase, alpha subunit. Sequences from Blastocladiella emersonii (GP|6636502, GP|6636502 and PIR|T43025), C. elegans (GP|2315419, GP|6671808 and PIR|T31763) and Drosophila melanogaster (GP|7291424) score below trusted cutoff, apparently due to long branch length (excessive divergence from the last common ancestor) as evidenced by a phylogenetic tree. Experimental evidence is needed to determine whether these sequences represent ATPases with conserved function. Aside from fragments, other sequences between trusted and noise appear to be bacterial ATPases of unclear lineage, but most likely calcium pumps.
Probab=20.47 E-value=55 Score=30.09 Aligned_cols=42 Identities=21% Similarity=0.185 Sum_probs=28.3
Q ss_pred CceeEEEEeCCCccHHHHHhhhCCCcEEEEcC-CCC-CCccceeecCC
Q psy9704 66 ERVKIIYAGDDVTDEDAMEALKGMAATFRVTQ-SQI-VKTAAERRLPS 111 (116)
Q Consensus 66 ~~~~pv~iGDD~TDEdaF~al~~~g~~i~VG~-~~~-~~T~A~~~l~~ 111 (116)
|. .+.++||.++|-.|++.. .+||-+|. +.+ ...+|++-|.+
T Consensus 683 g~-vv~~~GDG~ND~paLk~A---dVGiamg~~G~~vak~aADivL~d 726 (997)
T TIGR01106 683 GA-IVAVTGDGVNDSPALKKA---DIGVAMGIAGSDVSKQAADMILLD 726 (997)
T ss_pred CC-EEEEECCCcccHHHHhhC---CcceecCCcccHHHHHhhceEEec
Confidence 45 789999999999998765 55666662 211 13456776654
No 161
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=20.43 E-value=1.6e+02 Score=21.80 Aligned_cols=30 Identities=17% Similarity=0.303 Sum_probs=18.7
Q ss_pred eEEEEeCC-CccHHHH----HhhhCCCcE---EEEcCC
Q psy9704 69 KIIYAGDD-VTDEDAM----EALKGMAAT---FRVTQS 98 (116)
Q Consensus 69 ~pv~iGDD-~TDEdaF----~al~~~g~~---i~VG~~ 98 (116)
.++|+|++ ..||..+ +.+.+.++. |-+|..
T Consensus 110 ivi~v~S~~~~d~~~i~~~~~~lkk~~I~v~vI~~G~~ 147 (187)
T cd01452 110 IVAFVGSPIEEDEKDLVKLAKRLKKNNVSVDIINFGEI 147 (187)
T ss_pred EEEEEecCCcCCHHHHHHHHHHHHHcCCeEEEEEeCCC
Confidence 79999999 5555445 444556664 344653
No 162
>cd01830 XynE_like SGNH_hydrolase subfamily, similar to the putative arylesterase/acylhydrolase from the rumen anaerobe Prevotella bryantii XynE. The P. bryantii XynE gene is located in a xylanase gene cluster. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=20.40 E-value=61 Score=23.22 Aligned_cols=10 Identities=40% Similarity=0.830 Sum_probs=9.2
Q ss_pred EEEEeCCCcc
Q psy9704 70 IIYAGDDVTD 79 (116)
Q Consensus 70 pv~iGDD~TD 79 (116)
++|+||..|+
T Consensus 2 iv~~GDSiT~ 11 (204)
T cd01830 2 VVALGDSITD 11 (204)
T ss_pred EEEEeccccc
Confidence 6899999997
No 163
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=20.21 E-value=88 Score=23.24 Aligned_cols=24 Identities=25% Similarity=0.308 Sum_probs=15.7
Q ss_pred eEEEEeCC-CccHHHHHhhhCCCc-EEEE
Q psy9704 69 KIIYAGDD-VTDEDAMEALKGMAA-TFRV 95 (116)
Q Consensus 69 ~pv~iGDD-~TDEdaF~al~~~g~-~i~V 95 (116)
..+||||. .||-. .....|+ +|.|
T Consensus 215 ~~~~vGD~~~~Di~---~a~~~G~~~i~v 240 (242)
T TIGR01459 215 RMLMVGDSFYTDIL---GANRLGIDTALV 240 (242)
T ss_pred cEEEECCCcHHHHH---HHHHCCCeEEEE
Confidence 58999999 58843 3334555 6665
No 164
>PF13382 Adenine_deam_C: Adenine deaminase C-terminal domain; PDB: 3T8L_B 3T81_A 3NQB_A.
Probab=20.15 E-value=1.5e+02 Score=21.69 Aligned_cols=37 Identities=32% Similarity=0.338 Sum_probs=23.2
Q ss_pred eEEEEeCCCccHHHHHhhh---CCCcEEEEcCCCCCCccceeec
Q psy9704 69 KIIYAGDDVTDEDAMEALK---GMAATFRVTQSQIVKTAAERRL 109 (116)
Q Consensus 69 ~pv~iGDD~TDEdaF~al~---~~g~~i~VG~~~~~~T~A~~~l 109 (116)
-.+.+|+| ||||..|++ +.++++-|-.. ..-.|...|
T Consensus 67 niiviG~~--~~dm~~A~n~l~~~gGG~vvv~~--g~v~a~lpL 106 (171)
T PF13382_consen 67 NIIVIGTN--DEDMALAANRLIEMGGGIVVVDD--GEVLAELPL 106 (171)
T ss_dssp -EEEEESS--HHHHHHHHHHHHHTTSEEEEEET--TEEEEEEE-
T ss_pred CEEEEECC--HHHHHHHHHHHHHhCCCEEEEEC--CEEEEEEec
Confidence 67999985 888888886 46777666432 134454444
Done!