RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9704
(116 letters)
>1u02_A Trehalose-6-phosphate phosphatase related protein; structural
genomics, PSI; 1.92A {Thermoplasma acidophilum} SCOP:
c.108.1.15
Length = 239
Score = 46.2 bits (110), Expect = 3e-07
Identities = 5/47 (10%), Positives = 16/47 (34%), Gaps = 2/47 (4%)
Query: 6 LISGRNVHNVMEMVGIEGLTYAGNHGLEIIHPDGSRFVHPIPTECAS 52
+++GR+ + + ++ + HG +G +
Sbjct: 43 IVTGRSPEEISRFLPLD-INMICYHGAC-SKINGQIVYNNGSDRFLG 87
Score = 40.4 bits (95), Expect = 3e-05
Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 4/46 (8%)
Query: 66 ERVKIIYAGDDVTDEDAMEALKGMAATFRVTQSQIVKTAAERRLPS 111
I AGDD TDE A EA A T +V + +T A+ +
Sbjct: 170 GERPAIIAGDDATDEAAFEANDD-ALTIKVGEG---ETHAKFHVAD 211
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 29.7 bits (66), Expect = 0.15
Identities = 7/50 (14%), Positives = 13/50 (26%), Gaps = 5/50 (10%)
Query: 64 WTERVKIIYAGDDVTDEDAMEALKGMAAT-----FRVTQSQIVKTAAERR 108
W E + D + + + A + Q+ K R
Sbjct: 90 WREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNR 139
>3mn1_A Probable YRBI family phosphatase; structural genomics, PSI, protein
structure initiative, NYSG phosphatase; 1.80A
{Pseudomonas syringae PV} PDB: 3nrj_A
Length = 189
Score = 27.2 bits (61), Expect = 1.1
Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 4/37 (10%)
Query: 56 LRTAFGLDWTERVKIIYAGDDVTDEDAMEALKGMAAT 92
L L + + + Y GDD+ D + + G+
Sbjct: 102 LLAELQLGYEQ---VAYLGDDLPDLPVIRRV-GLGMA 134
>1k1e_A Deoxy-D-mannose-octulosonate 8-phosphate phosphat; structural
genomics, KDO 8-P phosphatase, structure function
project, S2F; HET: MES; 1.67A {Haemophilus influenzae
RD} SCOP: c.108.1.5 PDB: 1j8d_A*
Length = 180
Score = 27.1 bits (61), Expect = 1.1
Identities = 10/37 (27%), Positives = 13/37 (35%), Gaps = 4/37 (10%)
Query: 56 LRTAFGLDWTERVKIIYAGDDVTDEDAMEALKGMAAT 92
L G+ + Y GDD D A A G +
Sbjct: 91 LMKQAGVTAEQ---TAYIGDDSVDLPAFAAC-GTSFA 123
>2p9j_A Hypothetical protein AQ2171; secsg, riken, PSI, structural GENO
protein structure initiative, southeast collaboratory
for S genomics; 2.40A {Aquifex aeolicus}
Length = 162
Score = 27.1 bits (61), Expect = 1.2
Identities = 10/37 (27%), Positives = 17/37 (45%), Gaps = 4/37 (10%)
Query: 56 LRTAFGLDWTERVKIIYAGDDVTDEDAMEALKGMAAT 92
++ + L E I + GDDV D + M+ + G
Sbjct: 92 IKEKYSLKDEE---IGFIGDDVVDIEVMKKV-GFPVA 124
>3e8m_A Acylneuraminate cytidylyltransferase; 2-keto-3-deoxynononic acid
9-phosphate phosphohydrolase, nucleotidyltransferase;
HET: PEG PG4 EDO PGE; 1.10A {Bacteroides
thetaiotaomicron} PDB: 3e84_A 3e81_A*
Length = 164
Score = 26.7 bits (60), Expect = 1.3
Identities = 9/37 (24%), Positives = 18/37 (48%), Gaps = 4/37 (10%)
Query: 56 LRTAFGLDWTERVKIIYAGDDVTDEDAMEALKGMAAT 92
L G++ + + Y GDD+ D ++ + G+A
Sbjct: 87 LCNELGINLEQ---VAYIGDDLNDAKLLKRV-GIAGV 119
>3ewi_A N-acylneuraminate cytidylyltransferase; beta barrel, HAD-like,
rossmannoid fold, nucleotidyltransferase, nucleus; 1.90A
{Mus musculus}
Length = 168
Score = 26.7 bits (60), Expect = 1.3
Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 4/37 (10%)
Query: 56 LRTAFGLDWTERVKIIYAGDDVTDEDAMEALKGMAAT 92
R GL W E + Y G++V+DE+ ++ + G++A
Sbjct: 91 WRKEMGLCWKE---VAYLGNEVSDEECLKRV-GLSAV 123
>3mmz_A Putative HAD family hydrolase; structural genomics, protein
structure initiative, NEW YORK structural genomix
research consortium; 1.84A {Streptomyces avermitilis}
Length = 176
Score = 26.7 bits (60), Expect = 1.3
Identities = 7/37 (18%), Positives = 12/37 (32%), Gaps = 4/37 (10%)
Query: 56 LRTAFGLDWTERVKIIYAGDDVTDEDAMEALKGMAAT 92
G+ ++Y G+DV D + G
Sbjct: 94 WCEEQGIAPER---VLYVGNDVNDLPCFALV-GWPVA 126
>3ij5_A 3-deoxy-D-manno-octulosonate 8-phosphate phosphat; IDP022
hydrolase, lipopolysaccharide biosynthesis, magnesium,
STRU genomics; 1.95A {Yersinia pestis}
Length = 211
Score = 26.4 bits (59), Expect = 1.8
Identities = 8/37 (21%), Positives = 14/37 (37%), Gaps = 4/37 (10%)
Query: 56 LRTAFGLDWTERVKIIYAGDDVTDEDAMEALKGMAAT 92
L + + Y GDD+ D M + G++
Sbjct: 132 LLATLQCQPEQ---VAYIGDDLIDWPVMAQV-GLSVA 164
>2qsq_A Carcinoembryonic antigen-related cell adhesion MO; glycoprotein,
GPI-anchor, immunoglobulin DOMA lipoprotein, membrane;
1.95A {Homo sapiens} PDB: 2qst_A 2ver_N* 2gk2_A
Length = 111
Score = 26.1 bits (57), Expect = 2.1
Identities = 11/41 (26%), Positives = 14/41 (34%)
Query: 30 HGLEIIHPDGSRFVHPIPTECASIYILRTAFGLDWTERVKI 70
G EII+P+ S + I A Y L E
Sbjct: 63 SGREIIYPNASLLIQNIIQNDAGFYTLHVIKSDLVNEEATG 103
>3n1u_A Hydrolase, HAD superfamily, subfamily III A; structural genomics,
PSI-2; 1.80A {Legionella pneumophila}
Length = 191
Score = 26.0 bits (58), Expect = 2.7
Identities = 10/37 (27%), Positives = 17/37 (45%), Gaps = 4/37 (10%)
Query: 56 LRTAFGLDWTERVKIIYAGDDVTDEDAMEALKGMAAT 92
L+ GL+ E Y GDD+ D ++ + G+
Sbjct: 102 LKKTLGLNDDE---FAYIGDDLPDLPLIQQV-GLGVA 134
>3n07_A 3-deoxy-D-manno-octulosonate 8-phosphate phosphat; structural
genomics, phosphatase, PSI-2, protein structure
initiative; HET: MSE; 1.76A {Vibrio cholerae}
Length = 195
Score = 25.6 bits (57), Expect = 3.2
Identities = 7/37 (18%), Positives = 13/37 (35%), Gaps = 4/37 (10%)
Query: 56 LRTAFGLDWTERVKIIYAGDDVTDEDAMEALKGMAAT 92
+ + + Y GDD+ D ME + +
Sbjct: 108 ICQKLAIAPEQ---TGYIGDDLIDWPVMEKV-ALRVC 140
>2r8e_A 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; YRBI,
divalent metal, HAD superfamily, KDO 8-P, hydrolase;
1.40A {Escherichia coli O6} PDB: 2r8x_A 2r8y_A 2r8z_A
3hyc_A 3i6b_A*
Length = 188
Score = 25.6 bits (57), Expect = 3.8
Identities = 9/37 (24%), Positives = 15/37 (40%), Gaps = 4/37 (10%)
Query: 56 LRTAFGLDWTERVKIIYAGDDVTDEDAMEALKGMAAT 92
L + + Y GDD+ D ME + G++
Sbjct: 109 LLEKLAIAPEN---VAYVGDDLIDWPVMEKV-GLSVA 141
>1wub_A Conserved hypothetical protein TT1927B; beta-barrel, structural
genomics, riken structural genomics/proteomics
initiative, RSGI; HET: OTP; 1.65A {Thermus thermophilus}
SCOP: b.61.6.1
Length = 178
Score = 25.4 bits (56), Expect = 4.5
Identities = 10/46 (21%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
Query: 51 ASIYILRTAFGLDWTERVK--IIYAGDDVTDEDAMEALKGMAATFR 94
AS I R + L W + ++ + G++V +EA+ +
Sbjct: 133 ASGQINRKDWNLTWNQVLELGALLVGEEVKFNLEVEAVAPAPVAAQ 178
>2bsz_A Arylamine N-acetyltransferase 1; acyltransferase, complete
proteome; 2.0A {Rhizobium loti} SCOP: d.3.1.5
Length = 278
Score = 25.0 bits (54), Expect = 7.4
Identities = 11/44 (25%), Positives = 14/44 (31%), Gaps = 1/44 (2%)
Query: 24 LTYAGNHGLEIIHPDGSRFVHPIPTECASIYILRTAFGLDWTER 67
GN L I H G I T L+ G+ +R
Sbjct: 219 YALRGNR-LSIHHLGGRTEQTEIATAADLADTLQGLLGIIIPDR 261
>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid; HET:
NAD; 1.85A {Mycobacterium avium}
Length = 280
Score = 24.4 bits (54), Expect = 9.1
Identities = 12/46 (26%), Positives = 17/46 (36%), Gaps = 6/46 (13%)
Query: 47 PTECASIYILRTAFGLDWTER------VKIIYAGDDVTDEDAMEAL 86
P + Y + LD T R K + DV D+ A+ L
Sbjct: 50 PVSASVTYAPASPEDLDETARLVEDQGRKALTRVLDVRDDAALREL 95
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP
replication, DNA-binding, hydrolase, nucleotide-B SOS
response; HET: DNA; 1.80A {Escherichia coli} PDB:
2is6_A* 2is2_A* 2is1_A* 2is4_A*
Length = 647
Score = 24.7 bits (55), Expect = 9.2
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 4/30 (13%)
Query: 24 LTYAGN---HGLEIIHPDGSRFVHPIPTEC 50
LTYA +G E+ H SRF+ +P EC
Sbjct: 612 LTYAETRRLYGKEVYHR-PSRFIGELPEEC 640
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.136 0.416
Gapped
Lambda K H
0.267 0.0783 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,867,962
Number of extensions: 106399
Number of successful extensions: 464
Number of sequences better than 10.0: 1
Number of HSP's gapped: 463
Number of HSP's successfully gapped: 48
Length of query: 116
Length of database: 6,701,793
Length adjustment: 79
Effective length of query: 37
Effective length of database: 4,496,034
Effective search space: 166353258
Effective search space used: 166353258
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.3 bits)