RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy9704
         (116 letters)



>d1wkva1 c.79.1.1 (A:2-383) O-acetylserine sulfhydrylase (Cysteine
           synthase) {Archaeon Aeropyrum pernix [TaxId: 56636]}
          Length = 382

 Score = 28.6 bits (63), Expect = 0.15
 Identities = 21/84 (25%), Positives = 34/84 (40%)

Query: 9   GRNVHNVMEMVGIEGLTYAGNHGLEIIHPDGSRFVHPIPTECASIYILRTAFGLDWTERV 68
           G  +  V   +G  G   A    L+ + P     +       +   I R   G+ W   +
Sbjct: 249 GLALRGVAGSLGTSGHMSAAAFYLQSVDPSIRAVLVQPAQGDSIPGIRRVETGMLWINML 308

Query: 69  KIIYAGDDVTDEDAMEALKGMAAT 92
            I Y   +VT E+AMEA+  +A +
Sbjct: 309 DISYTLAEVTLEEAMEAVVEVARS 332


>d1u02a_ c.108.1.15 (A:) Trehalose-6-phosphate phosphatase related
           protein {Archaeon Thermoplasma acidophilum [TaxId:
           2303]}
          Length = 229

 Score = 28.4 bits (62), Expect = 0.16
 Identities = 20/86 (23%), Positives = 28/86 (32%), Gaps = 11/86 (12%)

Query: 26  YAGNHGLEIIHPDGSRFVHPIPTECASIYILRTAFGLDWTERVKIIYAGDDVTDEDAMEA 85
            A   G+E  +      +        S                  I AGDD TDE A EA
Sbjct: 136 IARIFGVETYYGKMIIELRVPGVNKGSAIRS-------VRGERPAIIAGDDATDEAAFEA 188

Query: 86  LKGMAATFRVTQSQIVKTAAERRLPS 111
               A T +V +    +T A+  +  
Sbjct: 189 N-DDALTIKVGEG---ETHAKFHVAD 210


>d1fnoa4 c.56.5.4 (A:1-207,A:321-408) Peptidase T (tripeptidase),
           catalytic domain {Salmonella typhimurium [TaxId: 90371]}
          Length = 295

 Score = 25.3 bits (54), Expect = 2.4
 Identities = 11/34 (32%), Positives = 15/34 (44%)

Query: 2   CTSLLISGRNVHNVMEMVGIEGLTYAGNHGLEII 35
           C +L   G N H   E V +EG+  A    + I 
Sbjct: 255 CPNLFTGGYNYHGKHEFVTLEGMEKAVQVIVRIA 288


>d2bsza1 d.3.1.5 (A:6-275) Arylamine N-acetyltransferase {Rhizobium
           loti [TaxId: 381]}
          Length = 270

 Score = 24.2 bits (52), Expect = 4.3
 Identities = 11/47 (23%), Positives = 14/47 (29%), Gaps = 1/47 (2%)

Query: 24  LTYAGNHGLEIIHPDGSRFVHPIPTECASIYILRTAFGLDWTERVKI 70
               GN  L I H  G      I T       L+   G+   +R   
Sbjct: 214 YALRGNR-LSIHHLGGRTEQTEIATAADLADTLQGLLGIIIPDRTAF 259


>d1b24a2 d.95.2.1 (A:100-179) DNA endonuclease I-dmoI {Archaeon
          Desulfurococcus mobilis [TaxId: 2274]}
          Length = 80

 Score = 23.4 bits (50), Expect = 4.5
 Identities = 11/40 (27%), Positives = 17/40 (42%), Gaps = 5/40 (12%)

Query: 12 VHNVMEMVGIEGLTYAGN--HG---LEIIHPDGSRFVHPI 46
          V   +  +G+    +  +  HG   L I   D  +FVH I
Sbjct: 39 VSRWLNNLGVRNTIHLDDHRHGVYVLNISLRDRIKFVHTI 78


>d1oyga_ b.67.2.2 (A:) Levansucrase {Bacillus subtilis [TaxId:
           1423]}
          Length = 440

 Score = 23.9 bits (51), Expect = 5.8
 Identities = 5/36 (13%), Positives = 14/36 (38%)

Query: 48  TECASIYILRTAFGLDWTERVKIIYAGDDVTDEDAM 83
            E A+++ +   + L    R   +      +++  M
Sbjct: 308 IERANVFKMNGKWYLFTDSRGSKMTIDGITSNDIYM 343


>d1m6ja_ c.1.1.1 (A:) Triosephosphate isomerase {Entamoeba
           histolytica [TaxId: 5759]}
          Length = 260

 Score = 23.7 bits (50), Expect = 7.9
 Identities = 10/77 (12%), Positives = 20/77 (25%), Gaps = 7/77 (9%)

Query: 8   SGRNVHNVMEMVGIEGLTYAGNHGLEIIHPDGSRFVHPIPTECASIYILRTAFGLDWTER 67
           +  +      ++      +A   G +   PD                 +      +  E 
Sbjct: 158 NAISKEAWKNIILAYEPVWAIGTG-KTATPD-----QAQEVHQYIRKWMTENISKEVAEA 211

Query: 68  VKIIYAGDDVTDEDAME 84
            +I Y G  V   +  E
Sbjct: 212 TRIQYGG-SVNPANCNE 227


>d1kv7a2 b.6.1.3 (A:171-335) multi-copper oxidase CueO {Escherichia
           coli [TaxId: 562]}
          Length = 165

 Score = 23.4 bits (50), Expect = 8.6
 Identities = 6/26 (23%), Positives = 9/26 (34%)

Query: 24  LTYAGNHGLEIIHPDGSRFVHPIPTE 49
              + N  L +I  DG     P+   
Sbjct: 76  FATSDNRPLYVIASDGGLLPEPVKVS 101


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.136    0.416 

Gapped
Lambda     K      H
   0.267   0.0697    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 445,504
Number of extensions: 19064
Number of successful extensions: 89
Number of sequences better than 10.0: 1
Number of HSP's gapped: 89
Number of HSP's successfully gapped: 17
Length of query: 116
Length of database: 2,407,596
Length adjustment: 73
Effective length of query: 43
Effective length of database: 1,405,306
Effective search space: 60428158
Effective search space used: 60428158
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (21.9 bits)