Query psy9705
Match_columns 140
No_of_seqs 133 out of 1036
Neff 6.4
Searched_HMMs 46136
Date Fri Aug 16 17:32:33 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9705.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9705hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02205 alpha,alpha-trehalose 100.0 5.1E-42 1.1E-46 312.0 14.3 137 1-139 448-609 (854)
2 PLN03064 alpha,alpha-trehalose 100.0 1.9E-37 4.1E-42 283.2 11.9 132 1-139 472-604 (934)
3 PLN03063 alpha,alpha-trehalose 100.0 8.6E-34 1.9E-38 257.0 13.1 133 1-140 388-521 (797)
4 PRK10117 trehalose-6-phosphate 100.0 1.3E-33 2.8E-38 243.4 10.2 92 1-92 364-455 (474)
5 PF00982 Glyco_transf_20: Glyc 100.0 4.7E-32 1E-36 234.0 6.6 89 1-90 385-474 (474)
6 PRK14501 putative bifunctional 100.0 1.5E-30 3.2E-35 233.4 14.6 132 1-139 374-505 (726)
7 COG0380 OtsA Trehalose-6-phosp 100.0 1.5E-31 3.3E-36 230.5 7.6 90 1-91 391-480 (486)
8 TIGR02398 gluc_glyc_Psyn gluco 100.0 8.2E-31 1.8E-35 226.8 8.7 90 1-91 394-483 (487)
9 KOG1050|consensus 99.9 5.2E-28 1.1E-32 217.0 8.4 132 1-140 385-517 (732)
10 TIGR02400 trehalose_OtsA alpha 99.9 2.7E-22 5.9E-27 172.5 8.5 88 1-89 368-455 (456)
11 cd03788 GT1_TPS Trehalose-6-Ph 99.8 2.6E-18 5.6E-23 147.5 10.1 87 1-88 373-459 (460)
12 PLN02580 trehalose-phosphatase 97.5 6.7E-05 1.4E-09 64.1 2.3 26 111-139 107-132 (384)
13 PF13524 Glyco_trans_1_2: Glyc 97.2 0.0015 3.4E-08 43.6 6.0 73 4-85 14-91 (92)
14 cd04951 GT1_WbdM_like This fam 97.1 0.002 4.3E-08 51.3 6.6 79 3-86 277-356 (360)
15 cd03814 GT1_like_2 This family 96.7 0.0071 1.5E-07 47.6 7.1 79 3-87 281-362 (364)
16 PLN03017 trehalose-phosphatase 96.6 0.0012 2.7E-08 56.1 2.5 31 106-139 94-124 (366)
17 cd03809 GT1_mtfB_like This fam 96.6 0.0075 1.6E-07 47.6 6.7 77 3-85 287-364 (365)
18 cd03798 GT1_wlbH_like This fam 96.6 0.0089 1.9E-07 46.4 7.0 81 2-89 292-375 (377)
19 PLN02151 trehalose-phosphatase 96.6 0.0014 3.1E-08 55.5 2.5 27 110-139 85-111 (354)
20 cd03823 GT1_ExpE7_like This fa 96.5 0.0091 2E-07 46.7 6.7 73 4-85 279-354 (359)
21 PRK15427 colanic acid biosynth 96.5 0.0094 2E-07 50.4 7.1 80 5-89 321-404 (406)
22 cd03800 GT1_Sucrose_synthase T 96.4 0.012 2.5E-07 47.7 6.7 77 3-85 317-397 (398)
23 cd03794 GT1_wbuB_like This fam 96.2 0.014 3E-07 45.8 6.1 66 18-84 324-393 (394)
24 PLN02871 UDP-sulfoquinovose:DA 96.2 0.023 5E-07 48.6 7.7 80 3-88 346-431 (465)
25 cd03807 GT1_WbnK_like This fam 96.2 0.022 4.9E-07 44.3 7.0 78 3-86 283-362 (365)
26 cd03820 GT1_amsD_like This fam 96.2 0.013 2.9E-07 45.1 5.7 76 3-84 267-346 (348)
27 cd03818 GT1_ExpC_like This fam 96.2 0.012 2.7E-07 48.8 5.8 71 3-79 315-389 (396)
28 cd03801 GT1_YqgM_like This fam 96.2 0.022 4.9E-07 43.8 6.9 79 3-87 290-372 (374)
29 cd05844 GT1_like_7 Glycosyltra 96.1 0.016 3.4E-07 46.6 6.1 75 5-85 287-365 (367)
30 cd03822 GT1_ecORF704_like This 96.0 0.026 5.7E-07 44.5 6.7 67 19-87 295-364 (366)
31 cd03808 GT1_cap1E_like This fa 96.0 0.019 4E-07 44.5 5.7 77 3-85 278-358 (359)
32 TIGR03449 mycothiol_MshA UDP-N 96.0 0.035 7.5E-07 45.8 7.5 81 3-89 317-400 (405)
33 TIGR03088 stp2 sugar transfera 95.8 0.041 8.9E-07 44.8 7.4 79 4-88 288-370 (374)
34 cd04962 GT1_like_5 This family 95.8 0.049 1.1E-06 43.8 7.5 80 3-88 285-368 (371)
35 TIGR02468 sucrsPsyn_pln sucros 95.5 0.042 9.1E-07 52.4 7.1 84 3-92 586-672 (1050)
36 cd03819 GT1_WavL_like This fam 95.4 0.03 6.5E-07 44.6 5.0 67 4-75 280-349 (355)
37 cd04946 GT1_AmsK_like This fam 95.3 0.044 9.5E-07 46.2 5.9 67 18-85 335-406 (407)
38 TIGR02472 sucr_P_syn_N sucrose 95.3 0.07 1.5E-06 45.4 7.0 75 3-83 355-433 (439)
39 cd03792 GT1_Trehalose_phosphor 95.2 0.078 1.7E-06 43.5 6.9 80 2-89 287-370 (372)
40 cd03821 GT1_Bme6_like This fam 95.1 0.065 1.4E-06 41.8 6.0 77 2-84 295-373 (375)
41 cd03825 GT1_wcfI_like This fam 95.0 0.099 2.1E-06 41.5 6.8 80 3-88 279-362 (365)
42 TIGR02149 glgA_Coryne glycogen 95.0 0.11 2.3E-06 42.3 7.1 81 4-90 296-386 (388)
43 cd03813 GT1_like_3 This family 94.9 0.08 1.7E-06 45.6 6.6 75 3-83 385-469 (475)
44 PRK15484 lipopolysaccharide 1, 94.7 0.13 2.7E-06 43.0 7.1 80 3-89 292-376 (380)
45 cd03804 GT1_wbaZ_like This fam 94.7 0.044 9.6E-07 44.2 4.2 52 2-58 274-328 (351)
46 cd03805 GT1_ALG2_like This fam 94.5 0.087 1.9E-06 42.9 5.5 73 3-82 314-390 (392)
47 PLN00142 sucrose synthase 94.5 0.11 2.3E-06 48.6 6.5 70 18-87 691-767 (815)
48 TIGR02470 sucr_synth sucrose s 94.4 0.11 2.4E-06 48.3 6.4 81 3-88 658-745 (784)
49 cd03817 GT1_UGDG_like This fam 93.9 0.13 2.8E-06 40.2 5.1 67 3-76 293-362 (374)
50 PHA01630 putative group 1 glyc 93.7 0.23 5E-06 41.2 6.5 81 3-89 224-329 (331)
51 PLN02949 transferase, transfer 93.3 0.3 6.5E-06 42.5 6.8 82 3-91 369-457 (463)
52 PRK10307 putative glycosyl tra 93.3 0.44 9.6E-06 39.6 7.6 80 6-91 325-408 (412)
53 cd04950 GT1_like_1 Glycosyltra 92.7 0.35 7.6E-06 40.1 6.1 76 5-89 295-370 (373)
54 PF00534 Glycos_transf_1: Glyc 92.6 0.1 2.3E-06 37.7 2.6 40 18-57 117-159 (172)
55 cd04949 GT1_gtfA_like This fam 92.1 0.32 6.9E-06 39.5 5.1 63 19-82 304-370 (372)
56 cd03796 GT1_PIG-A_like This fa 91.6 0.68 1.5E-05 38.4 6.7 82 4-91 285-368 (398)
57 cd03795 GT1_like_4 This family 91.3 0.37 8.1E-06 38.1 4.6 56 18-74 290-349 (357)
58 cd03812 GT1_CapH_like This fam 91.3 0.25 5.4E-06 39.3 3.6 66 2-72 280-347 (358)
59 TIGR02095 glgA glycogen/starch 91.0 0.43 9.3E-06 40.8 5.0 39 18-56 390-437 (473)
60 cd03806 GT1_ALG11_like This fa 90.9 0.35 7.6E-06 41.1 4.3 67 3-76 339-412 (419)
61 PHA01633 putative glycosyl tra 90.7 0.38 8.2E-06 40.4 4.3 47 36-84 287-333 (335)
62 PLN02779 haloacid dehalogenase 90.4 0.15 3.2E-06 41.5 1.5 15 126-140 40-54 (286)
63 cd03799 GT1_amsK_like This is 90.4 0.58 1.3E-05 36.9 4.9 63 5-73 278-343 (355)
64 PRK09922 UDP-D-galactose:(gluc 90.1 0.45 9.7E-06 39.0 4.2 50 4-58 273-326 (359)
65 cd03816 GT1_ALG1_like This fam 90.0 0.63 1.4E-05 39.3 5.1 63 5-74 334-401 (415)
66 cd03802 GT1_AviGT4_like This f 89.8 0.83 1.8E-05 35.9 5.3 49 3-58 259-310 (335)
67 TIGR01672 AphA HAD superfamily 89.4 0.33 7.2E-06 38.9 2.8 33 106-140 45-77 (237)
68 PRK13225 phosphoglycolate phos 87.5 0.32 7E-06 39.4 1.6 13 128-140 64-76 (273)
69 cd03791 GT1_Glycogen_synthase_ 85.1 1.1 2.3E-05 38.1 3.6 40 18-57 395-443 (476)
70 PRK11133 serB phosphoserine ph 84.6 0.59 1.3E-05 39.0 1.8 15 123-139 109-123 (322)
71 TIGR03087 stp1 sugar transfera 84.4 4.2 9.2E-05 33.7 6.9 78 4-88 314-394 (397)
72 PRK00654 glgA glycogen synthas 84.1 1.8 3.9E-05 37.1 4.7 39 18-56 381-428 (466)
73 PLN02575 haloacid dehalogenase 83.8 0.53 1.2E-05 40.4 1.2 13 127-139 132-144 (381)
74 cd04955 GT1_like_6 This family 82.9 3.1 6.6E-05 33.0 5.2 73 4-84 284-358 (363)
75 PRK06698 bifunctional 5'-methy 81.2 0.6 1.3E-05 40.3 0.6 13 127-139 242-254 (459)
76 PLN02605 monogalactosyldiacylg 81.2 6.1 0.00013 32.8 6.6 75 4-84 294-375 (382)
77 PLN02887 hydrolase family prot 78.2 1.5 3.3E-05 39.5 2.2 22 115-139 300-321 (580)
78 TIGR01684 viral_ppase viral ph 77.4 1.4 3.1E-05 36.7 1.7 12 128-139 128-139 (301)
79 PRK09814 beta-1,6-galactofuran 76.2 8.7 0.00019 31.4 6.0 50 18-72 261-313 (333)
80 PRK05749 3-deoxy-D-manno-octul 75.5 6.8 0.00015 32.8 5.3 66 4-75 336-406 (425)
81 PRK14099 glycogen synthase; Pr 74.6 5.3 0.00012 34.8 4.6 37 19-55 395-443 (485)
82 PRK14502 bifunctional mannosyl 74.4 1.8 3.9E-05 40.0 1.6 13 127-139 417-429 (694)
83 PHA03398 viral phosphatase sup 74.4 1.9 4E-05 36.1 1.6 15 123-139 127-141 (303)
84 TIGR02918 accessory Sec system 72.6 13 0.00028 32.7 6.5 66 18-85 417-494 (500)
85 PF09419 PGP_phosphatase: Mito 71.2 2.6 5.6E-05 32.2 1.6 15 126-140 41-55 (168)
86 PRK10125 putative glycosyl tra 70.8 11 0.00024 32.0 5.5 44 3-51 321-366 (405)
87 cd03793 GT1_Glycogen_synthase_ 70.7 11 0.00024 34.2 5.7 54 3-61 489-557 (590)
88 cd03811 GT1_WabH_like This fam 70.5 10 0.00022 28.9 4.8 50 4-58 279-331 (353)
89 PRK14098 glycogen synthase; Pr 69.6 7.1 0.00015 34.1 4.2 38 19-56 407-451 (489)
90 PLN02939 transferase, transfer 69.1 13 0.00029 35.7 6.1 66 19-86 882-962 (977)
91 COG0438 RfaG Glycosyltransfera 64.5 56 0.0012 24.2 8.5 40 18-57 301-343 (381)
92 PLN02919 haloacid dehalogenase 62.6 3.8 8.3E-05 39.4 1.2 13 127-139 76-88 (1057)
93 PRK13609 diacylglycerol glucos 61.9 30 0.00065 28.3 6.3 51 40-91 322-372 (380)
94 TIGR00496 frr ribosome recycli 60.6 4 8.8E-05 31.3 0.9 36 18-54 38-73 (176)
95 PRK15179 Vi polysaccharide bio 60.1 15 0.00033 33.9 4.6 65 18-83 616-686 (694)
96 TIGR01663 PNK-3'Pase polynucle 58.5 6.2 0.00013 35.3 1.8 13 127-139 169-181 (526)
97 PF14338 Mrr_N: Mrr N-terminal 58.1 19 0.00041 24.1 3.8 53 39-91 18-70 (92)
98 PF13693 HTH_35: Winged helix- 57.2 6.4 0.00014 26.5 1.3 36 22-60 21-57 (78)
99 cd01421 IMPCH Inosine monophos 54.4 13 0.00028 29.0 2.7 43 35-77 139-181 (187)
100 cd00520 RRF Ribosome recycling 53.1 6.7 0.00014 30.1 1.0 35 19-54 44-78 (179)
101 PRK15490 Vi polysaccharide bio 53.1 32 0.0007 31.3 5.4 71 18-88 497-573 (578)
102 TIGR01133 murG undecaprenyldip 52.8 49 0.0011 26.3 6.0 47 35-82 298-346 (348)
103 PF03796 DnaB_C: DnaB-like hel 51.8 20 0.00044 28.1 3.6 88 52-139 54-144 (259)
104 COG3882 FkbH Predicted enzyme 51.4 13 0.00028 33.4 2.5 27 111-139 209-235 (574)
105 KOG1387|consensus 51.1 46 0.001 29.0 5.7 49 42-90 410-458 (465)
106 PLN02316 synthase/transferase 49.5 51 0.0011 32.1 6.4 41 19-59 945-1001(1036)
107 PF14682 SPOB_ab: Sporulation 48.5 14 0.00031 26.5 2.0 49 77-139 38-86 (115)
108 PRK11009 aphA acid phosphatase 47.2 18 0.0004 28.9 2.7 32 106-139 45-76 (237)
109 PRK00083 frr ribosome recyclin 45.7 9.3 0.0002 29.5 0.7 36 18-54 47-82 (185)
110 PF01808 AICARFT_IMPCHas: AICA 43.7 23 0.0005 29.8 2.8 52 35-86 9-62 (315)
111 PTZ00445 p36-lilke protein; Pr 41.1 20 0.00044 28.7 2.0 27 111-139 30-56 (219)
112 smart00798 AICARFT_IMPCHas AIC 40.7 28 0.0006 29.3 2.8 48 35-82 9-58 (311)
113 KOG2134|consensus 40.3 15 0.00033 32.0 1.2 12 128-139 77-88 (422)
114 PLN00414 glycosyltransferase f 37.0 1.8E+02 0.004 25.2 7.4 51 41-91 387-441 (446)
115 PF08496 Peptidase_S49_N: Pept 35.1 25 0.00054 26.5 1.6 14 122-137 96-109 (155)
116 PF01765 RRF: Ribosome recycli 33.2 18 0.00039 27.1 0.5 37 18-55 29-65 (165)
117 PRK00726 murG undecaprenyldiph 32.6 1.4E+02 0.0031 24.0 5.8 51 35-86 301-353 (357)
118 TIGR00236 wecB UDP-N-acetylglu 32.0 1.1E+02 0.0025 24.8 5.2 36 19-55 296-333 (365)
119 cd07316 terB_like_DjlA N-termi 31.9 1.5E+02 0.0033 19.5 5.1 34 39-72 51-84 (106)
120 COG0138 PurH AICAR transformyl 31.0 77 0.0017 28.5 4.1 51 35-85 142-194 (515)
121 PF13692 Glyco_trans_1_4: Glyc 30.7 26 0.00057 23.8 1.0 34 19-54 97-133 (135)
122 PF02775 TPP_enzyme_C: Thiamin 29.0 41 0.00088 24.2 1.8 31 24-54 112-143 (153)
123 PRK00881 purH bifunctional pho 27.3 60 0.0013 29.2 2.9 48 35-82 144-193 (513)
124 KOG4759|consensus 27.2 25 0.00055 28.8 0.5 34 19-53 127-161 (263)
125 PF14038 YqzE: YqzE-like prote 27.1 1.7E+02 0.0036 18.4 4.1 37 45-82 8-44 (54)
126 KOG1605|consensus 25.7 44 0.00096 27.3 1.7 16 121-138 86-101 (262)
127 PHA02530 pseT polynucleotide k 25.5 50 0.0011 26.2 1.9 12 128-139 160-171 (300)
128 KOG0754|consensus 25.2 24 0.00051 29.2 -0.0 28 21-48 107-134 (294)
129 PF10881 DUF2726: Protein of u 25.1 1.1E+02 0.0024 21.3 3.5 52 2-54 54-126 (126)
130 PF05989 Chordopox_A35R: Chord 24.8 62 0.0013 25.1 2.2 26 111-138 82-107 (176)
131 KOG4072|consensus 24.6 25 0.00054 25.7 0.0 12 129-140 96-107 (127)
132 cd03785 GT1_MurG MurG is an N- 23.9 1.6E+02 0.0035 23.3 4.7 41 35-76 301-343 (350)
133 TIGR00355 purH phosphoribosyla 23.6 76 0.0017 28.5 2.8 49 35-83 139-189 (511)
134 PLN02275 transferase, transfer 23.5 70 0.0015 26.3 2.5 35 18-54 334-371 (371)
135 TIGR01533 lipo_e_P4 5'-nucleot 22.8 56 0.0012 26.6 1.7 13 127-139 76-88 (266)
136 PRK13608 diacylglycerol glucos 22.7 3.7E+02 0.008 22.3 6.8 51 40-91 322-372 (391)
137 PF02809 UIM: Ubiquitin intera 22.6 29 0.00063 16.8 0.0 12 49-60 6-17 (18)
138 COG5083 SMP2 Uncharacterized p 22.4 55 0.0012 29.3 1.7 15 123-139 374-388 (580)
139 cd08812 CARD_RIG-I_like Caspas 21.9 2.3E+02 0.005 18.9 4.4 30 62-91 50-79 (88)
140 PF08083 PROCN: PROCN (NUC071) 21.4 4E+02 0.0087 23.3 6.6 67 40-123 287-353 (408)
141 PRK07004 replicative DNA helic 21.2 2.5E+02 0.0054 24.5 5.5 15 53-67 249-263 (460)
142 COG4650 RtcR Sigma54-dependent 21.0 71 0.0015 27.5 2.0 17 37-53 79-95 (531)
143 cd07313 terB_like_2 tellurium 20.9 2.5E+02 0.0055 18.5 4.5 14 39-52 52-65 (104)
144 PF08696 Dna2: DNA replication 20.6 2.5E+02 0.0054 21.8 4.9 51 32-87 101-161 (209)
145 COG0233 Frr Ribosome recycling 20.5 57 0.0012 25.5 1.3 20 35-55 66-85 (187)
146 PRK09165 replicative DNA helic 20.4 1.8E+02 0.0039 25.6 4.6 18 51-68 265-282 (497)
147 TIGR00159 conserved hypothetic 20.4 1.2E+02 0.0026 24.1 3.1 39 17-55 170-208 (211)
No 1
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Probab=100.00 E-value=5.1e-42 Score=312.00 Aligned_cols=137 Identities=33% Similarity=0.552 Sum_probs=121.7
Q ss_pred CCCcceeeeecccCC--------------CCeeEEeCcCcchhhhhccCceeCCCCHHHHHHHHHHHhCCCHHHHHHHHH
Q psy9705 1 MNLVAKEFVACQINE--------------PPGVLIVSPFAGAGEQMHEALICNPYEIDAAAEVIHRALTMPEDERTLRMN 66 (140)
Q Consensus 1 MNLva~Eyv~~q~~~--------------~~g~LiLSEfaG~a~~L~~ai~VNP~d~~~~A~ai~~AL~m~~~er~~r~~ 66 (140)
|||||||||+||+++ ++|+||||||||||.+|+|||+|||||++++|+||++||+||++||+.||+
T Consensus 448 MNLva~Eyia~~~~~~~~~~~~~~~~~~~~~gvLiLSEfaGaa~~L~~Ai~VNP~d~~~~a~ai~~AL~m~~~Er~~R~~ 527 (854)
T PLN02205 448 MNLIPYEYIISRQGNEKLDKLLGLEPSTPKKSMLVVSEFIGCSPSLSGAIRVNPWNIDAVADAMDSALEMAEPEKQLRHE 527 (854)
T ss_pred ccccchheeEEccCccccccccccccccCCCCceEeeeccchhHHhCcCeEECCCCHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999999999752 489999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCChhHHHHHHHHHHHHhhHhh-----CCCCCCCcccccccc------cHHHHHHHHHccCCCceEEEEeccc
Q psy9705 67 YLRKREKVHDVNYWMRSFLKGMGTLITED-----GDDVLPTTMQPVTLE------DFDEYLSKYIGTHEQAWALLLDYDG 135 (140)
Q Consensus 67 ~l~~~V~~~~~~~W~~~~l~~l~~~~~~~-----~~~~~~~~~~p~~~~------~~~~~~~~Y~~s~~R~rl~~lDydG 135 (140)
+++++|.+||+.+|+++||.+|.++++.+ .+.|++..++.+.++ +++.++++|+++++| +|||||||
T Consensus 528 ~~~~~v~~~d~~~W~~~fl~~l~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~l~~~~i~~~y~~~~~r--lI~LDyDG 605 (854)
T PLN02205 528 KHYRYVSTHDVGYWARSFLQDLERTCRDHSRRRCWGIGFGLSFRVVALDPNFRKLSMEHIVSAYKRTTTR--AILLDYDG 605 (854)
T ss_pred HHHHHHhhCCHHHHHHHHHHHHHHHHHHHhhhhhcccccccccccccccccccccCHHHHHHHHHhhcCe--EEEEecCC
Confidence 99999999999999999999999885433 234555666553332 668899999999988 99999999
Q ss_pred cccC
Q psy9705 136 ELWL 139 (140)
Q Consensus 136 TL~~ 139 (140)
||+|
T Consensus 606 TLlp 609 (854)
T PLN02205 606 TLMP 609 (854)
T ss_pred cccC
Confidence 9996
No 2
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=100.00 E-value=1.9e-37 Score=283.17 Aligned_cols=132 Identities=32% Similarity=0.540 Sum_probs=118.3
Q ss_pred CCCcceeeeecccCCCCeeEEeCcCcchhhhhc-cCceeCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCChhH
Q psy9705 1 MNLVAKEFVACQINEPPGVLIVSPFAGAGEQMH-EALICNPYEIDAAAEVIHRALTMPEDERTLRMNYLRKREKVHDVNY 79 (140)
Q Consensus 1 MNLva~Eyv~~q~~~~~g~LiLSEfaG~a~~L~-~ai~VNP~d~~~~A~ai~~AL~m~~~er~~r~~~l~~~V~~~~~~~ 79 (140)
|||||+|||+||.++ +|+||||||+|+++.|+ +|++|||||++++|+||++||+|+++||++|+++++++|.+||+++
T Consensus 472 mNLva~Eyva~~~~~-~GvLILSEfaGaa~~L~~~AllVNP~D~~~vA~AI~~AL~M~~~Er~~r~~~~~~~V~~~d~~~ 550 (934)
T PLN03064 472 MNLVSYEFVACQDSK-KGVLILSEFAGAAQSLGAGAILVNPWNITEVAASIAQALNMPEEEREKRHRHNFMHVTTHTAQE 550 (934)
T ss_pred cCchHHHHHHhhcCC-CCCeEEeCCCchHHHhCCceEEECCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcccCCHHH
Confidence 999999999999876 99999999999999995 8999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhHhhCCCCCCCcccccccccHHHHHHHHHccCCCceEEEEeccccccC
Q psy9705 80 WMRSFLKGMGTLITEDGDDVLPTTMQPVTLEDFDEYLSKYIGTHEQAWALLLDYDGELWL 139 (140)
Q Consensus 80 W~~~~l~~l~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~Y~~s~~R~rl~~lDydGTL~~ 139 (140)
|+++|+.+|..++.++... ..++.|. .+.+.+.++|+++++| +|||||||||+|
T Consensus 551 Wa~~fl~~L~~~~~~~~~~--~~~~~~~--l~~~~~~~~y~~a~~R--LlfLDyDGTLap 604 (934)
T PLN03064 551 WAETFVSELNDTVVEAQLR--TRQVPPQ--LPPEDAIQRYLQSNNR--LLILGFNATLTE 604 (934)
T ss_pred HHHHHHHHHHHHHhhhhcc--ccccCCC--CCHHHHHHHHHhccce--EEEEecCceecc
Confidence 9999999999986544321 1233331 2779999999999988 999999999997
No 3
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=100.00 E-value=8.6e-34 Score=256.97 Aligned_cols=133 Identities=32% Similarity=0.546 Sum_probs=118.0
Q ss_pred CCCcceeeeecccCCCCeeEEeCcCcchhhhhc-cCceeCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCChhH
Q psy9705 1 MNLVAKEFVACQINEPPGVLIVSPFAGAGEQMH-EALICNPYEIDAAAEVIHRALTMPEDERTLRMNYLRKREKVHDVNY 79 (140)
Q Consensus 1 MNLva~Eyv~~q~~~~~g~LiLSEfaG~a~~L~-~ai~VNP~d~~~~A~ai~~AL~m~~~er~~r~~~l~~~V~~~~~~~ 79 (140)
||||++||++|+.++ +|+||||||+|+++.|+ +|++|||||++++|+||++||+|+++||++|+++++++|.+||+.+
T Consensus 388 mnLv~lEamA~g~p~-~gvlVlSe~~G~~~~l~~~allVnP~D~~~lA~AI~~aL~m~~~er~~r~~~~~~~v~~~~~~~ 466 (797)
T PLN03063 388 MNLVSYEFVACQKAK-KGVLVLSEFAGAGQSLGAGALLVNPWNITEVSSAIKEALNMSDEERETRHRHNFQYVKTHSAQK 466 (797)
T ss_pred cCcchhhHheeecCC-CCCEEeeCCcCchhhhcCCeEEECCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhhCCHHH
Confidence 899999999999876 99999999999999996 7999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhHhhCCCCCCCcccccccccHHHHHHHHHccCCCceEEEEeccccccCC
Q psy9705 80 WMRSFLKGMGTLITEDGDDVLPTTMQPVTLEDFDEYLSKYIGTHEQAWALLLDYDGELWLP 140 (140)
Q Consensus 80 W~~~~l~~l~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~Y~~s~~R~rl~~lDydGTL~~~ 140 (140)
|+++|+.+|.++++++.... ....| . .+.+.+.++|+++++| +|||||||||+|+
T Consensus 467 Wa~~fl~~l~~~~~~~~~~~--~~~~~-~-l~~~~~~~~y~~a~~r--ll~LDyDGTL~~~ 521 (797)
T PLN03063 467 WADDFMSELNDIIVEAELRT--RNIPL-E-LPEQDVIQQYSKSNNR--LLILGFYGTLTEP 521 (797)
T ss_pred HHHHHHHHHHHHhhhhhhcc--cCCCC-C-CCHHHHHHHHHhccCe--EEEEecCccccCC
Confidence 99999999999865443211 12222 1 2778999999999888 9999999999963
No 4
>PRK10117 trehalose-6-phosphate synthase; Provisional
Probab=100.00 E-value=1.3e-33 Score=243.36 Aligned_cols=92 Identities=43% Similarity=0.687 Sum_probs=88.6
Q ss_pred CCCcceeeeecccCCCCeeEEeCcCcchhhhhccCceeCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCChhHH
Q psy9705 1 MNLVAKEFVACQINEPPGVLIVSPFAGAGEQMHEALICNPYEIDAAAEVIHRALTMPEDERTLRMNYLRKREKVHDVNYW 80 (140)
Q Consensus 1 MNLva~Eyv~~q~~~~~g~LiLSEfaG~a~~L~~ai~VNP~d~~~~A~ai~~AL~m~~~er~~r~~~l~~~V~~~~~~~W 80 (140)
|||||||||+||+..++||||||||||||++|++|++|||||++++|+||++||+||++||++|++.++++|.+||+.+|
T Consensus 364 MNLVAkEyva~q~~~~~GvLILSefAGaA~~L~~AllVNP~d~~~~A~Ai~~AL~Mp~~Er~~R~~~l~~~v~~~dv~~W 443 (474)
T PRK10117 364 MNLVAKEYVAAQDPANPGVLVLSQFAGAANELTSALIVNPYDRDEVAAALDRALTMPLAERISRHAEMLDVIVKNDINHW 443 (474)
T ss_pred cccccchheeeecCCCCccEEEecccchHHHhCCCeEECCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhCCHHHH
Confidence 99999999999984449999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhh
Q psy9705 81 MRSFLKGMGTLI 92 (140)
Q Consensus 81 ~~~~l~~l~~~~ 92 (140)
+++||.+|..+.
T Consensus 444 ~~~fL~~L~~~~ 455 (474)
T PRK10117 444 QECFISDLKQIV 455 (474)
T ss_pred HHHHHHHHHHhh
Confidence 999999999874
No 5
>PF00982 Glyco_transf_20: Glycosyltransferase family 20; InterPro: IPR001830 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 20 GT20 from CAZY comprises enzymes with only one known activity; alpha, alpha-trehalose-phosphate synthase [UDP-forming] (2.4.1.15 from EC). Synthesis of trehalose in the yeast Saccharomyces cerevisiae is catalysed by the trehalose-6-phosphate (Tre6P) synthase/phosphatase complex, which is composed of at least three different subunits encoded by the genes TPS1, TPS2, and TSL1. Tps1 and Tps2 carry the catalytic activities of trehalose synthesis, namely Tre6P synthase (Tps1) and Tre6P phosphatase (Tps2), while TsI1 has regulatory functions. There is some evidence that TsI1 and Tps3 may share a common function with respect to regulation and/or structural stabilisation of the Tre6P synthase/phosphatase complex in exponentially growing, heat-shocked cells []. OtsA (trehalose-6-phosphate synthase) from Escherichia coli has homology to the full-length TPS1, the N-terminal part of TPS2 and an internal region of TPS3 (TSL1) of yeast [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1UQU_A 2WTX_A 1UQT_B 1GZ5_B.
Probab=99.97 E-value=4.7e-32 Score=234.01 Aligned_cols=89 Identities=54% Similarity=0.910 Sum_probs=74.9
Q ss_pred CCCcceeeeecccCCCCeeEEeCcCcchhhhhc-cCceeCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCChhH
Q psy9705 1 MNLVAKEFVACQINEPPGVLIVSPFAGAGEQMH-EALICNPYEIDAAAEVIHRALTMPEDERTLRMNYLRKREKVHDVNY 79 (140)
Q Consensus 1 MNLva~Eyv~~q~~~~~g~LiLSEfaG~a~~L~-~ai~VNP~d~~~~A~ai~~AL~m~~~er~~r~~~l~~~V~~~~~~~ 79 (140)
|||||+|||+||+++ +||||||||||||++|+ +|++|||||++++|+||++||+||++||+.|+++++++|.+||+.+
T Consensus 385 mNLva~Eyva~q~~~-~GvLiLSefaGaa~~L~~~al~VNP~d~~~~A~ai~~AL~M~~~Er~~r~~~~~~~v~~~~~~~ 463 (474)
T PF00982_consen 385 MNLVAKEYVACQDDN-PGVLILSEFAGAAEQLSEAALLVNPWDIEEVADAIHEALTMPPEERKERHARLREYVREHDVQW 463 (474)
T ss_dssp --HHHHHHHHHS-TS---EEEEETTBGGGGT-TTS-EEE-TT-HHHHHHHHHHHHT--HHHHHHHHHHHHHHHHHT-HHH
T ss_pred cCCcceEEEEEecCC-CCceEeeccCCHHHHcCCccEEECCCChHHHHHHHHHHHcCCHHHHHHHHHHHHHHhHhCCHHH
Confidence 999999999999986 99999999999999998 6899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q psy9705 80 WMRSFLKGMGT 90 (140)
Q Consensus 80 W~~~~l~~l~~ 90 (140)
|+++||.+|++
T Consensus 464 W~~~~l~~L~~ 474 (474)
T PF00982_consen 464 WAESFLRDLKR 474 (474)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHhhC
Confidence 99999999974
No 6
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=99.97 E-value=1.5e-30 Score=233.40 Aligned_cols=132 Identities=38% Similarity=0.594 Sum_probs=118.1
Q ss_pred CCCcceeeeecccCCCCeeEEeCcCcchhhhhccCceeCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCChhHH
Q psy9705 1 MNLVAKEFVACQINEPPGVLIVSPFAGAGEQMHEALICNPYEIDAAAEVIHRALTMPEDERTLRMNYLRKREKVHDVNYW 80 (140)
Q Consensus 1 MNLva~Eyv~~q~~~~~g~LiLSEfaG~a~~L~~ai~VNP~d~~~~A~ai~~AL~m~~~er~~r~~~l~~~V~~~~~~~W 80 (140)
||||++||++|+.+. +|++|+|||+|++..|.++++|||||++++|++|.+||+|+.+||++|++.++++|.++|...|
T Consensus 374 ~~lv~~Eama~~~~~-~g~~vls~~~G~~~~l~~~llv~P~d~~~la~ai~~~l~~~~~e~~~r~~~~~~~v~~~~~~~w 452 (726)
T PRK14501 374 MNLVAKEYVASRTDG-DGVLILSEMAGAAAELAEALLVNPNDIEGIAAAIKRALEMPEEEQRERMQAMQERLRRYDVHKW 452 (726)
T ss_pred cCcccceEEEEcCCC-CceEEEecccchhHHhCcCeEECCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCHHHH
Confidence 899999999999876 8999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhHhhCCCCCCCcccccccccHHHHHHHHHccCCCceEEEEeccccccC
Q psy9705 81 MRSFLKGMGTLITEDGDDVLPTTMQPVTLEDFDEYLSKYIGTHEQAWALLLDYDGELWL 139 (140)
Q Consensus 81 ~~~~l~~l~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~Y~~s~~R~rl~~lDydGTL~~ 139 (140)
+++|+..+.++++++.... ....| ..+++.+.++|+++++| ||+|||||||++
T Consensus 453 ~~~~l~~l~~~~~~~~~~~--~~~~~--~~~~~~~~~~y~~~~~r--Li~~D~DGTL~~ 505 (726)
T PRK14501 453 ASDFLDELREAAEKNKAFA--SKPIT--PAAAEEIIARYRAASRR--LLLLDYDGTLVP 505 (726)
T ss_pred HHHHHHHHHHHHhhhhccc--cccCC--ccCHHHHHHHHHhccce--EEEEecCccccC
Confidence 9999999999975543221 22222 23789999999998888 999999999996
No 7
>COG0380 OtsA Trehalose-6-phosphate synthase [Carbohydrate transport and metabolism]
Probab=99.97 E-value=1.5e-31 Score=230.50 Aligned_cols=90 Identities=49% Similarity=0.757 Sum_probs=87.7
Q ss_pred CCCcceeeeecccCCCCeeEEeCcCcchhhhhccCceeCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCChhHH
Q psy9705 1 MNLVAKEFVACQINEPPGVLIVSPFAGAGEQMHEALICNPYEIDAAAEVIHRALTMPEDERTLRMNYLRKREKVHDVNYW 80 (140)
Q Consensus 1 MNLva~Eyv~~q~~~~~g~LiLSEfaG~a~~L~~ai~VNP~d~~~~A~ai~~AL~m~~~er~~r~~~l~~~V~~~~~~~W 80 (140)
|||||+|||+||.++ +|+||||||||||..|.+|+.|||||++++|++|+.||+||++||++|++.|++.|.+||+++|
T Consensus 391 MNLvakEyVa~q~~~-~G~LiLSeFaGaa~~L~~AliVNP~d~~~va~ai~~AL~m~~eEr~~r~~~~~~~v~~~d~~~W 469 (486)
T COG0380 391 MNLVAKEYVAAQRDK-PGVLILSEFAGAASELRDALIVNPWDTKEVADAIKRALTMSLEERKERHEKLLKQVLTHDVARW 469 (486)
T ss_pred ccHHHHHHHHhhcCC-CCcEEEeccccchhhhccCEeECCCChHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhhhHHHH
Confidence 999999999999965 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh
Q psy9705 81 MRSFLKGMGTL 91 (140)
Q Consensus 81 ~~~~l~~l~~~ 91 (140)
+.+|+.+|...
T Consensus 470 ~~~fl~~la~~ 480 (486)
T COG0380 470 ANSFLDDLAQA 480 (486)
T ss_pred HHHHHHHHHhc
Confidence 99999999864
No 8
>TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase. Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha,alpha-trehalose-phosphate synthase, likewise involved in osmolyte biosynthesis, of E. coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this model and scores between trusted and noise.
Probab=99.97 E-value=8.2e-31 Score=226.84 Aligned_cols=90 Identities=40% Similarity=0.565 Sum_probs=87.2
Q ss_pred CCCcceeeeecccCCCCeeEEeCcCcchhhhhccCceeCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCChhHH
Q psy9705 1 MNLVAKEFVACQINEPPGVLIVSPFAGAGEQMHEALICNPYEIDAAAEVIHRALTMPEDERTLRMNYLRKREKVHDVNYW 80 (140)
Q Consensus 1 MNLva~Eyv~~q~~~~~g~LiLSEfaG~a~~L~~ai~VNP~d~~~~A~ai~~AL~m~~~er~~r~~~l~~~V~~~~~~~W 80 (140)
|||||+|||+||.++ +||||||||+|||+.|.+|++|||||++++|+||++||+||.+||++||++++++|.+||+.+|
T Consensus 394 mNLVa~Eyva~~~~~-~GvLILSefaGaa~~l~~AllVNP~d~~~~A~ai~~AL~m~~~Er~~R~~~l~~~v~~~d~~~W 472 (487)
T TIGR02398 394 LNLVAKEYVAAQGLL-DGVLVLSEFAGAAVELKGALLTNPYDPVRMDETIYVALAMPKAEQQARMREMFDAVNYYDVQRW 472 (487)
T ss_pred cCcchhhHHhhhcCC-CCCEEEeccccchhhcCCCEEECCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhCCHHHH
Confidence 999999999999876 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh
Q psy9705 81 MRSFLKGMGTL 91 (140)
Q Consensus 81 ~~~~l~~l~~~ 91 (140)
+++||.+|...
T Consensus 473 ~~~fl~~l~~~ 483 (487)
T TIGR02398 473 ADEFLAAVSPQ 483 (487)
T ss_pred HHHHHHHhhhc
Confidence 99999998743
No 9
>KOG1050|consensus
Probab=99.95 E-value=5.2e-28 Score=216.99 Aligned_cols=132 Identities=36% Similarity=0.586 Sum_probs=120.0
Q ss_pred CCCcceeeeecccCCCCeeEEeCcCcchhhhh-ccCceeCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCChhH
Q psy9705 1 MNLVAKEFVACQINEPPGVLIVSPFAGAGEQM-HEALICNPYEIDAAAEVIHRALTMPEDERTLRMNYLRKREKVHDVNY 79 (140)
Q Consensus 1 MNLva~Eyv~~q~~~~~g~LiLSEfaG~a~~L-~~ai~VNP~d~~~~A~ai~~AL~m~~~er~~r~~~l~~~V~~~~~~~ 79 (140)
|||+++||++||.++ .|++|||||+|+++.+ .+|+.+||||.+++|.+|..||+|+.+||..|+...+++|..|++..
T Consensus 385 mnl~~~e~i~~~~~~-~~~lVlsef~G~~~tl~d~aivvnpw~~~~~~~~i~~al~~s~~e~~~r~~~~~~~v~~~~~~~ 463 (732)
T KOG1050|consen 385 MNLVFLEYILCQENK-KSVLVLSEFIGDDTTLEDAAIVVNPWDGDEFAILISKALTMSDEERELREPKHYKYVSTHDVVY 463 (732)
T ss_pred cchhhhHHHHhhccc-CCceEEeeeccccccccccCEEECCcchHHHHHHHHHHhhcCHHHHhhcchhhhhhhcchhHHH
Confidence 899999999999986 8999999999999999 68999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhHhhCCCCCCCcccccccccHHHHHHHHHccCCCceEEEEeccccccCC
Q psy9705 80 WMRSFLKGMGTLITEDGDDVLPTTMQPVTLEDFDEYLSKYIGTHEQAWALLLDYDGELWLP 140 (140)
Q Consensus 80 W~~~~l~~l~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~Y~~s~~R~rl~~lDydGTL~~~ 140 (140)
|+.+|+..+.+.|+... ++.+..|+ ...+.+++.|+++++| +|+||||||+++|
T Consensus 464 W~~~~~~~l~~~~~~~~---~~~~~~~~--l~~~~~i~~y~~s~~r--li~ldyd~t~~~~ 517 (732)
T KOG1050|consen 464 WAKSFLQGLKRIWKVGF---LGFRVTPL--LTAEHIVSDYKKSKKR--LILLDYDLTLIPP 517 (732)
T ss_pred HHHHHHHhhhhhhhhcc---cccccccc--cChhHhhhhhhhccce--EEEecccccccCC
Confidence 99999999999886553 22344442 2668899999999999 9999999999986
No 10
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=99.87 E-value=2.7e-22 Score=172.46 Aligned_cols=88 Identities=48% Similarity=0.759 Sum_probs=85.3
Q ss_pred CCCcceeeeecccCCCCeeEEeCcCcchhhhhccCceeCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCChhHH
Q psy9705 1 MNLVAKEFVACQINEPPGVLIVSPFAGAGEQMHEALICNPYEIDAAAEVIHRALTMPEDERTLRMNYLRKREKVHDVNYW 80 (140)
Q Consensus 1 MNLva~Eyv~~q~~~~~g~LiLSEfaG~a~~L~~ai~VNP~d~~~~A~ai~~AL~m~~~er~~r~~~l~~~V~~~~~~~W 80 (140)
||||++||++|+... +|+||+|||+|+++.+.++++|||||++++|+||.+||+|+++||++|+++++++|.++|+.+|
T Consensus 368 ~~Lv~lEamA~g~P~-~g~vVlS~~~G~~~~l~~gllVnP~d~~~lA~aI~~aL~~~~~er~~r~~~~~~~v~~~~~~~W 446 (456)
T TIGR02400 368 MNLVAKEYVAAQDPK-DGVLILSEFAGAAQELNGALLVNPYDIDGMADAIARALTMPLEEREERHRAMMDKLRKNDVQRW 446 (456)
T ss_pred cCccHHHHHHhcCCC-CceEEEeCCCCChHHhCCcEEECCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhCCHHHH
Confidence 899999999999877 7999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q psy9705 81 MRSFLKGMG 89 (140)
Q Consensus 81 ~~~~l~~l~ 89 (140)
+++|+.+|.
T Consensus 447 ~~~~l~~l~ 455 (456)
T TIGR02400 447 REDFLSDLN 455 (456)
T ss_pred HHHHHHHhh
Confidence 999999885
No 11
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=99.76 E-value=2.6e-18 Score=147.48 Aligned_cols=87 Identities=57% Similarity=0.939 Sum_probs=84.0
Q ss_pred CCCcceeeeecccCCCCeeEEeCcCcchhhhhccCceeCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCChhHH
Q psy9705 1 MNLVAKEFVACQINEPPGVLIVSPFAGAGEQMHEALICNPYEIDAAAEVIHRALTMPEDERTLRMNYLRKREKVHDVNYW 80 (140)
Q Consensus 1 MNLva~Eyv~~q~~~~~g~LiLSEfaG~a~~L~~ai~VNP~d~~~~A~ai~~AL~m~~~er~~r~~~l~~~V~~~~~~~W 80 (140)
||||++||++|+..+ +|+||+|+++|+++.+.++++|||||.+++|++|.++|+|+++||+.|+++++++|.++|...|
T Consensus 373 ~~lv~lEAma~g~p~-~g~vV~S~~~G~~~~~~~g~lv~p~d~~~la~ai~~~l~~~~~e~~~~~~~~~~~v~~~~~~~w 451 (460)
T cd03788 373 MNLVAKEYVACQDDD-PGVLILSEFAGAAEELSGALLVNPYDIDEVADAIHRALTMPLEERRERHRKLREYVRTHDVQAW 451 (460)
T ss_pred cCcccceeEEEecCC-CceEEEeccccchhhcCCCEEECCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCHHHH
Confidence 799999999999876 9999999999999998789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH
Q psy9705 81 MRSFLKGM 88 (140)
Q Consensus 81 ~~~~l~~l 88 (140)
+++|+.+|
T Consensus 452 ~~~~l~~l 459 (460)
T cd03788 452 ANSFLDDL 459 (460)
T ss_pred HHHHHHhh
Confidence 99999887
No 12
>PLN02580 trehalose-phosphatase
Probab=97.46 E-value=6.7e-05 Score=64.08 Aligned_cols=26 Identities=35% Similarity=0.681 Sum_probs=20.8
Q ss_pred cHHHHHHHHHccCCCceEEEEeccccccC
Q psy9705 111 DFDEYLSKYIGTHEQAWALLLDYDGELWL 139 (140)
Q Consensus 111 ~~~~~~~~Y~~s~~R~rl~~lDydGTL~~ 139 (140)
.|+. ...|.+++++ ++||||||||+|
T Consensus 107 ~~~~-~~~~~~~k~~--~LfLDyDGTLaP 132 (384)
T PLN02580 107 SFEQ-IANFAKGKKI--ALFLDYDGTLSP 132 (384)
T ss_pred HHHH-HHHHhhcCCe--EEEEecCCccCC
Confidence 3444 3478888888 999999999986
No 13
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=97.16 E-value=0.0015 Score=43.55 Aligned_cols=73 Identities=25% Similarity=0.257 Sum_probs=54.7
Q ss_pred cceeeeecccCCCCeeEEeCcCc-chhhhhc---cCceeCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhh-cCChh
Q psy9705 4 VAKEFVACQINEPPGVLIVSPFA-GAGEQMH---EALICNPYEIDAAAEVIHRALTMPEDERTLRMNYLRKREK-VHDVN 78 (140)
Q Consensus 4 va~Eyv~~q~~~~~g~LiLSEfa-G~a~~L~---~ai~VNP~d~~~~A~ai~~AL~m~~~er~~r~~~l~~~V~-~~~~~ 78 (140)
..+|+++| |.+++|..+ |....+. ..+.++ |+++++++|...|+ .+++|++--+..+++|. .||..
T Consensus 14 r~~E~~a~------G~~vi~~~~~~~~~~~~~~~~~~~~~--~~~el~~~i~~ll~-~~~~~~~ia~~a~~~v~~~~t~~ 84 (92)
T PF13524_consen 14 RIFEAMAC------GTPVISDDSPGLREIFEDGEHIITYN--DPEELAEKIEYLLE-NPEERRRIAKNARERVLKRHTWE 84 (92)
T ss_pred HHHHHHHC------CCeEEECChHHHHHHcCCCCeEEEEC--CHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHHhCCHH
Confidence 44566555 555555554 6666773 378888 99999999999999 77888888888899988 77776
Q ss_pred HHHHHHH
Q psy9705 79 YWMRSFL 85 (140)
Q Consensus 79 ~W~~~~l 85 (140)
+=++.|+
T Consensus 85 ~~~~~il 91 (92)
T PF13524_consen 85 HRAEQIL 91 (92)
T ss_pred HHHHHHH
Confidence 6666655
No 14
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=97.06 E-value=0.002 Score=51.26 Aligned_cols=79 Identities=24% Similarity=0.301 Sum_probs=60.5
Q ss_pred CcceeeeecccCCCCeeEEeCcCcchhhhhcc-CceeCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCChhHHH
Q psy9705 3 LVAKEFVACQINEPPGVLIVSPFAGAGEQMHE-ALICNPYEIDAAAEVIHRALTMPEDERTLRMNYLRKREKVHDVNYWM 81 (140)
Q Consensus 3 Lva~Eyv~~q~~~~~g~LiLSEfaG~a~~L~~-ai~VNP~d~~~~A~ai~~AL~m~~~er~~r~~~l~~~V~~~~~~~W~ 81 (140)
++..|+++| .-|+|.|...|..+.+.+ ...++|.|.++++++|.+.+..+++.+....+........++...++
T Consensus 277 ~~~~Ea~a~-----G~PvI~~~~~~~~e~i~~~g~~~~~~~~~~~~~~i~~ll~~~~~~~~~~~~~~~~~~~~~s~~~~~ 351 (360)
T cd04951 277 LVVAEAMAC-----ELPVVATDAGGVREVVGDSGLIVPISDPEALANKIDEILKMSGEERDIIGARRERIVKKFSINSIV 351 (360)
T ss_pred hHHHHHHHc-----CCCEEEecCCChhhEecCCceEeCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 455677666 236788998888888864 78899999999999999999988888777666634455677877777
Q ss_pred HHHHH
Q psy9705 82 RSFLK 86 (140)
Q Consensus 82 ~~~l~ 86 (140)
+.+.+
T Consensus 352 ~~~~~ 356 (360)
T cd04951 352 QQWLT 356 (360)
T ss_pred HHHHH
Confidence 77664
No 15
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=96.70 E-value=0.0071 Score=47.57 Aligned_cols=79 Identities=16% Similarity=0.218 Sum_probs=62.6
Q ss_pred CcceeeeecccCCCCeeEEeCcCcchhhhhc---cCceeCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCChhH
Q psy9705 3 LVAKEFVACQINEPPGVLIVSPFAGAGEQMH---EALICNPYEIDAAAEVIHRALTMPEDERTLRMNYLRKREKVHDVNY 79 (140)
Q Consensus 3 Lva~Eyv~~q~~~~~g~LiLSEfaG~a~~L~---~ai~VNP~d~~~~A~ai~~AL~m~~~er~~r~~~l~~~V~~~~~~~ 79 (140)
++..|+++| .-|+|.|...|..+.+. ..+.++|.|.++++++|.+.++ .++++.+..+...+++..++...
T Consensus 281 ~~~lEa~a~-----g~PvI~~~~~~~~~~i~~~~~g~~~~~~~~~~l~~~i~~l~~-~~~~~~~~~~~~~~~~~~~~~~~ 354 (364)
T cd03814 281 LVVLEAMAS-----GLPVVAPDAGGPADIVTDGENGLLVEPGDAEAFAAALAALLA-DPELRRRMAARARAEAERRSWEA 354 (364)
T ss_pred cHHHHHHHc-----CCCEEEcCCCCchhhhcCCcceEEcCCCCHHHHHHHHHHHHc-CHHHHHHHHHHHHHHHhhcCHHH
Confidence 456777766 24788999999888885 3788999999999999999886 45677777777888888888888
Q ss_pred HHHHHHHH
Q psy9705 80 WMRSFLKG 87 (140)
Q Consensus 80 W~~~~l~~ 87 (140)
+++.+++-
T Consensus 355 ~~~~~~~~ 362 (364)
T cd03814 355 FLDNLLEA 362 (364)
T ss_pred HHHHHHHh
Confidence 88877654
No 16
>PLN03017 trehalose-phosphatase
Probab=96.65 E-value=0.0012 Score=56.09 Aligned_cols=31 Identities=32% Similarity=0.565 Sum_probs=22.1
Q ss_pred ccccccHHHHHHHHHccCCCceEEEEeccccccC
Q psy9705 106 PVTLEDFDEYLSKYIGTHEQAWALLLDYDGELWL 139 (140)
Q Consensus 106 p~~~~~~~~~~~~Y~~s~~R~rl~~lDydGTL~~ 139 (140)
|-.+..|+.+.... +.+++ +|||||||||+|
T Consensus 94 psal~~~~~~~~~~-~~k~~--llflD~DGTL~P 124 (366)
T PLN03017 94 PSALEMFEQIMEAS-RGKQI--VMFLDYDGTLSP 124 (366)
T ss_pred ChHHHHHHHHHHHh-cCCCe--EEEEecCCcCcC
Confidence 33344667776666 44666 999999999994
No 17
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=96.62 E-value=0.0075 Score=47.56 Aligned_cols=77 Identities=26% Similarity=0.187 Sum_probs=58.6
Q ss_pred CcceeeeecccCCCCeeEEeCcCcchhhhhc-cCceeCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCChhHHH
Q psy9705 3 LVAKEFVACQINEPPGVLIVSPFAGAGEQMH-EALICNPYEIDAAAEVIHRALTMPEDERTLRMNYLRKREKVHDVNYWM 81 (140)
Q Consensus 3 Lva~Eyv~~q~~~~~g~LiLSEfaG~a~~L~-~ai~VNP~d~~~~A~ai~~AL~m~~~er~~r~~~l~~~V~~~~~~~W~ 81 (140)
++..|+++| .-|+|.|...|..+.++ +.+.++|.|.++++++|.+.+. .++.+.+..+...+++..++...++
T Consensus 287 ~~~~Ea~a~-----G~pvI~~~~~~~~e~~~~~~~~~~~~~~~~~~~~i~~l~~-~~~~~~~~~~~~~~~~~~~sw~~~~ 360 (365)
T cd03809 287 LPVLEAMAC-----GTPVIASNISSLPEVAGDAALYFDPLDPEALAAAIERLLE-DPALREELRERGLARAKRFSWEKTA 360 (365)
T ss_pred CCHHHHhcC-----CCcEEecCCCCccceecCceeeeCCCCHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 445666655 23678888877777765 5789999999999999999875 5666666666666788888888888
Q ss_pred HHHH
Q psy9705 82 RSFL 85 (140)
Q Consensus 82 ~~~l 85 (140)
+.++
T Consensus 361 ~~~~ 364 (365)
T cd03809 361 RRTL 364 (365)
T ss_pred HHHh
Confidence 7765
No 18
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=96.60 E-value=0.0089 Score=46.38 Aligned_cols=81 Identities=23% Similarity=0.208 Sum_probs=57.5
Q ss_pred CCcceeeeecccCCCCeeEEeCcCcchhhhhc-cC--ceeCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCChh
Q psy9705 2 NLVAKEFVACQINEPPGVLIVSPFAGAGEQMH-EA--LICNPYEIDAAAEVIHRALTMPEDERTLRMNYLRKREKVHDVN 78 (140)
Q Consensus 2 NLva~Eyv~~q~~~~~g~LiLSEfaG~a~~L~-~a--i~VNP~d~~~~A~ai~~AL~m~~~er~~r~~~l~~~V~~~~~~ 78 (140)
.++..|+++| .-++|.|...|..+.+. +. +.++|.|.++++++|.++++.+.. +...+........++..
T Consensus 292 ~~~~~Ea~~~-----G~pvI~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~~~~--~~~~~~~~~~~~~~s~~ 364 (377)
T cd03798 292 GLVLLEAMAC-----GLPVVATDVGGIPEIITDGENGLLVPPGDPEALAEAILRLLADPWL--RLGRAARRRVAERFSWE 364 (377)
T ss_pred ChHHHHHHhc-----CCCEEEecCCChHHHhcCCcceeEECCCCHHHHHHHHHHHhcCcHH--HHhHHHHHHHHHHhhHH
Confidence 3456777666 24788999888888874 33 899999999999999999998775 22223334445566777
Q ss_pred HHHHHHHHHHH
Q psy9705 79 YWMRSFLKGMG 89 (140)
Q Consensus 79 ~W~~~~l~~l~ 89 (140)
.+++.+..-+.
T Consensus 365 ~~~~~~~~~~~ 375 (377)
T cd03798 365 NVAERLLELYR 375 (377)
T ss_pred HHHHHHHHHHh
Confidence 77777666554
No 19
>PLN02151 trehalose-phosphatase
Probab=96.58 E-value=0.0014 Score=55.50 Aligned_cols=27 Identities=37% Similarity=0.559 Sum_probs=19.2
Q ss_pred ccHHHHHHHHHccCCCceEEEEeccccccC
Q psy9705 110 EDFDEYLSKYIGTHEQAWALLLDYDGELWL 139 (140)
Q Consensus 110 ~~~~~~~~~Y~~s~~R~rl~~lDydGTL~~ 139 (140)
+.++.+... .+++++ +|||||||||+|
T Consensus 85 ~~~~~~~~~-~~~~~~--ll~lDyDGTL~P 111 (354)
T PLN02151 85 NMFEEILHK-SEGKQI--VMFLDYDGTLSP 111 (354)
T ss_pred HHHHHHHHh-hcCCce--EEEEecCccCCC
Confidence 345655554 345666 999999999995
No 20
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=96.54 E-value=0.0091 Score=46.74 Aligned_cols=73 Identities=18% Similarity=0.225 Sum_probs=52.8
Q ss_pred cceeeeecccCCCCeeEEeCcCcchhhhhcc---CceeCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCChhHH
Q psy9705 4 VAKEFVACQINEPPGVLIVSPFAGAGEQMHE---ALICNPYEIDAAAEVIHRALTMPEDERTLRMNYLRKREKVHDVNYW 80 (140)
Q Consensus 4 va~Eyv~~q~~~~~g~LiLSEfaG~a~~L~~---ai~VNP~d~~~~A~ai~~AL~m~~~er~~r~~~l~~~V~~~~~~~W 80 (140)
+..|+++| .-|+|.|...|..+.+.. .+.+.|.|.++++++|.+.++ .++.+.+..+..++.+.. ...
T Consensus 279 ~~~Ea~a~-----G~Pvi~~~~~~~~e~i~~~~~g~~~~~~d~~~l~~~i~~l~~-~~~~~~~~~~~~~~~~~~---~~~ 349 (359)
T cd03823 279 VIREALAA-----GVPVIASDIGGMAELVRDGVNGLLFPPGDAEDLAAALERLID-DPDLLERLRAGIEPPRSI---EDQ 349 (359)
T ss_pred HHHHHHHC-----CCCEEECCCCCHHHHhcCCCcEEEECCCCHHHHHHHHHHHHh-ChHHHHHHHHhHHHhhhH---HHH
Confidence 45566665 246888999988888853 799999999999999999998 666666666666665543 444
Q ss_pred HHHHH
Q psy9705 81 MRSFL 85 (140)
Q Consensus 81 ~~~~l 85 (140)
++.++
T Consensus 350 ~~~~~ 354 (359)
T cd03823 350 AEEYL 354 (359)
T ss_pred HHHHH
Confidence 44433
No 21
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=96.52 E-value=0.0094 Score=50.42 Aligned_cols=80 Identities=13% Similarity=0.074 Sum_probs=61.5
Q ss_pred ceeeeecccCCCCeeEEeCcCcchhhhhc---cCceeCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh-hcCChhHH
Q psy9705 5 AKEFVACQINEPPGVLIVSPFAGAGEQMH---EALICNPYEIDAAAEVIHRALTMPEDERTLRMNYLRKRE-KVHDVNYW 80 (140)
Q Consensus 5 a~Eyv~~q~~~~~g~LiLSEfaG~a~~L~---~ai~VNP~d~~~~A~ai~~AL~m~~~er~~r~~~l~~~V-~~~~~~~W 80 (140)
-.|+++| .-|+|.|...|..+.+. ..+.+.|.|.+++|++|.+.++|+++++++..+..+++| ..++....
T Consensus 321 llEAma~-----G~PVI~t~~~g~~E~v~~~~~G~lv~~~d~~~la~ai~~l~~~d~~~~~~~~~~ar~~v~~~f~~~~~ 395 (406)
T PRK15427 321 LMEAMAV-----GIPVVSTLHSGIPELVEADKSGWLVPENDAQALAQRLAAFSQLDTDELAPVVKRAREKVETDFNQQVI 395 (406)
T ss_pred HHHHHhC-----CCCEEEeCCCCchhhhcCCCceEEeCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 3455555 23788899999888874 268999999999999999999999988887777777776 44677777
Q ss_pred HHHHHHHHH
Q psy9705 81 MRSFLKGMG 89 (140)
Q Consensus 81 ~~~~l~~l~ 89 (140)
++.+.+-+.
T Consensus 396 ~~~l~~~~~ 404 (406)
T PRK15427 396 NRELASLLQ 404 (406)
T ss_pred HHHHHHHHh
Confidence 776665443
No 22
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=96.39 E-value=0.012 Score=47.68 Aligned_cols=77 Identities=21% Similarity=0.207 Sum_probs=58.1
Q ss_pred CcceeeeecccCCCCeeEEeCcCcchhhhhc---cCceeCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh-hcCChh
Q psy9705 3 LVAKEFVACQINEPPGVLIVSPFAGAGEQMH---EALICNPYEIDAAAEVIHRALTMPEDERTLRMNYLRKRE-KVHDVN 78 (140)
Q Consensus 3 Lva~Eyv~~q~~~~~g~LiLSEfaG~a~~L~---~ai~VNP~d~~~~A~ai~~AL~m~~~er~~r~~~l~~~V-~~~~~~ 78 (140)
++..|+++|. =|+|.|+..|..+.+. ..+.++|.|.++++++|.+.++. ++++.+..+...+++ ..++..
T Consensus 317 ~~l~Ea~a~G-----~Pvi~s~~~~~~e~i~~~~~g~~~~~~~~~~l~~~i~~l~~~-~~~~~~~~~~a~~~~~~~~s~~ 390 (398)
T cd03800 317 LTALEAMACG-----LPVVATAVGGPRDIVVDGVTGLLVDPRDPEALAAALRRLLTD-PALRRRLSRAGLRRARARYTWE 390 (398)
T ss_pred cHHHHHHhcC-----CCEEECCCCCHHHHccCCCCeEEeCCCCHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhCCHH
Confidence 4456776662 3688999999988884 26889999999999999999876 556665556666666 777877
Q ss_pred HHHHHHH
Q psy9705 79 YWMRSFL 85 (140)
Q Consensus 79 ~W~~~~l 85 (140)
..++.++
T Consensus 391 ~~~~~~~ 397 (398)
T cd03800 391 RVAARLL 397 (398)
T ss_pred HHHHHHh
Confidence 7777654
No 23
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=96.23 E-value=0.014 Score=45.76 Aligned_cols=66 Identities=18% Similarity=0.125 Sum_probs=53.7
Q ss_pred eeEEeCcCcchhhhhcc---CceeCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhh-cCChhHHHHHH
Q psy9705 18 GVLIVSPFAGAGEQMHE---ALICNPYEIDAAAEVIHRALTMPEDERTLRMNYLRKREK-VHDVNYWMRSF 84 (140)
Q Consensus 18 g~LiLSEfaG~a~~L~~---ai~VNP~d~~~~A~ai~~AL~m~~~er~~r~~~l~~~V~-~~~~~~W~~~~ 84 (140)
-++|.+...|....+.. .+.+.|-|.++++++|.+.+ ..++++.+..+...+++. .++...+++.+
T Consensus 324 ~pvi~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 393 (394)
T cd03794 324 KPVLASVDGESAELVEEAGAGLVVPPGDPEALAAAILELL-DDPEERAEMGENGRRYVEEKFSREKLAERL 393 (394)
T ss_pred CcEEEecCCCchhhhccCCcceEeCCCCHHHHHHHHHHHH-hChHHHHHHHHHHHHHHHHhhcHHHHHHhc
Confidence 47899999998888853 78999999999999999999 556677777777777777 77888877765
No 24
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=96.18 E-value=0.023 Score=48.58 Aligned_cols=80 Identities=15% Similarity=0.145 Sum_probs=62.5
Q ss_pred CcceeeeecccCCCCeeEEeCcCcchhhhhcc------CceeCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCC
Q psy9705 3 LVAKEFVACQINEPPGVLIVSPFAGAGEQMHE------ALICNPYEIDAAAEVIHRALTMPEDERTLRMNYLRKREKVHD 76 (140)
Q Consensus 3 Lva~Eyv~~q~~~~~g~LiLSEfaG~a~~L~~------ai~VNP~d~~~~A~ai~~AL~m~~~er~~r~~~l~~~V~~~~ 76 (140)
++..|+++| .-|+|.|...|..+.+.+ .+.+.|-|.+++|++|.+.++ .++.+.+..+..++++.+++
T Consensus 346 ~~vlEAmA~-----G~PVI~s~~gg~~eiv~~~~~~~~G~lv~~~d~~~la~~i~~ll~-~~~~~~~~~~~a~~~~~~fs 419 (465)
T PLN02871 346 FVVLEAMAS-----GVPVVAARAGGIPDIIPPDQEGKTGFLYTPGDVDDCVEKLETLLA-DPELRERMGAAAREEVEKWD 419 (465)
T ss_pred cHHHHHHHc-----CCCEEEcCCCCcHhhhhcCCCCCceEEeCCCCHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHhCC
Confidence 345677666 247889999888887632 789999999999999999987 56666666677777888888
Q ss_pred hhHHHHHHHHHH
Q psy9705 77 VNYWMRSFLKGM 88 (140)
Q Consensus 77 ~~~W~~~~l~~l 88 (140)
-...++.++...
T Consensus 420 w~~~a~~l~~~~ 431 (465)
T PLN02871 420 WRAATRKLRNEQ 431 (465)
T ss_pred HHHHHHHHHHHH
Confidence 888888888753
No 25
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=96.17 E-value=0.022 Score=44.28 Aligned_cols=78 Identities=19% Similarity=0.235 Sum_probs=57.4
Q ss_pred CcceeeeecccCCCCeeEEeCcCcchhhhhcc-CceeCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhh-cCChhHH
Q psy9705 3 LVAKEFVACQINEPPGVLIVSPFAGAGEQMHE-ALICNPYEIDAAAEVIHRALTMPEDERTLRMNYLRKREK-VHDVNYW 80 (140)
Q Consensus 3 Lva~Eyv~~q~~~~~g~LiLSEfaG~a~~L~~-ai~VNP~d~~~~A~ai~~AL~m~~~er~~r~~~l~~~V~-~~~~~~W 80 (140)
++..|+++| .-|+|.|...|..+.+.+ .+.++|.|.++++++|.+.++.+ +++.+..+...+++. .++...-
T Consensus 283 ~~~~Ea~a~-----g~PvI~~~~~~~~e~~~~~g~~~~~~~~~~l~~~i~~l~~~~-~~~~~~~~~~~~~~~~~~s~~~~ 356 (365)
T cd03807 283 NVLLEAMAC-----GLPVVATDVGDNAELVGDTGFLVPPGDPEALAEAIEALLADP-ALRQALGEAARERIEENFSIEAM 356 (365)
T ss_pred cHHHHHHhc-----CCCEEEcCCCChHHHhhcCCEEeCCCCHHHHHHHHHHHHhCh-HHHHHHHHHHHHHHHHhCCHHHH
Confidence 455677666 247888999998888864 78999999999999999999976 556655566666664 3565555
Q ss_pred HHHHHH
Q psy9705 81 MRSFLK 86 (140)
Q Consensus 81 ~~~~l~ 86 (140)
++.+.+
T Consensus 357 ~~~~~~ 362 (365)
T cd03807 357 VEAYEE 362 (365)
T ss_pred HHHHHH
Confidence 555543
No 26
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=96.17 E-value=0.013 Score=45.13 Aligned_cols=76 Identities=17% Similarity=0.177 Sum_probs=51.9
Q ss_pred CcceeeeecccCCCCeeEEeCcCcc-hhhhhc---cCceeCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCChh
Q psy9705 3 LVAKEFVACQINEPPGVLIVSPFAG-AGEQMH---EALICNPYEIDAAAEVIHRALTMPEDERTLRMNYLRKREKVHDVN 78 (140)
Q Consensus 3 Lva~Eyv~~q~~~~~g~LiLSEfaG-~a~~L~---~ai~VNP~d~~~~A~ai~~AL~m~~~er~~r~~~l~~~V~~~~~~ 78 (140)
++..|+++| .-++|.|...| ...... ..+.++|.|.++++++|.+.++- ++.+.+..+...+++..++..
T Consensus 267 ~~~~Ea~a~-----G~Pvi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~ll~~-~~~~~~~~~~~~~~~~~~~~~ 340 (348)
T cd03820 267 MVLLEAMAF-----GLPVISFDCPTGPSEIIEDGVNGLLVPNGDVEALAEALLRLMED-EELRKRMGANARESAERFSIE 340 (348)
T ss_pred HHHHHHHHc-----CCCEEEecCCCchHhhhccCcceEEeCCCCHHHHHHHHHHHHcC-HHHHHHHHHHHHHHHHHhCHH
Confidence 445666655 23677787654 444443 36889999999999999999874 445555555556777777777
Q ss_pred HHHHHH
Q psy9705 79 YWMRSF 84 (140)
Q Consensus 79 ~W~~~~ 84 (140)
..++.+
T Consensus 341 ~~~~~~ 346 (348)
T cd03820 341 NIIKQW 346 (348)
T ss_pred HHHHHh
Confidence 766655
No 27
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=96.16 E-value=0.012 Score=48.77 Aligned_cols=71 Identities=20% Similarity=0.196 Sum_probs=53.0
Q ss_pred CcceeeeecccCCCCeeEEeCcCcchhhhhc---cCceeCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhc-CChh
Q psy9705 3 LVAKEFVACQINEPPGVLIVSPFAGAGEQMH---EALICNPYEIDAAAEVIHRALTMPEDERTLRMNYLRKREKV-HDVN 78 (140)
Q Consensus 3 Lva~Eyv~~q~~~~~g~LiLSEfaG~a~~L~---~ai~VNP~d~~~~A~ai~~AL~m~~~er~~r~~~l~~~V~~-~~~~ 78 (140)
++..|+++| .-++|.|...|..+.+. ..+.+.|.|.+++|++|.+.+..+ +++.+..+..++++.. ++..
T Consensus 315 ~~llEAmA~-----G~PVIas~~~g~~e~i~~~~~G~lv~~~d~~~la~~i~~ll~~~-~~~~~l~~~ar~~~~~~fs~~ 388 (396)
T cd03818 315 WSLLEAMAC-----GCLVVGSDTAPVREVITDGENGLLVDFFDPDALAAAVIELLDDP-ARRARLRRAARRTALRYDLLS 388 (396)
T ss_pred hHHHHHHHC-----CCCEEEcCCCCchhhcccCCceEEcCCCCHHHHHHHHHHHHhCH-HHHHHHHHHHHHHHHHhccHH
Confidence 456788777 24788898888888875 268999999999999999999764 5666666666777765 4433
Q ss_pred H
Q psy9705 79 Y 79 (140)
Q Consensus 79 ~ 79 (140)
.
T Consensus 389 ~ 389 (396)
T cd03818 389 V 389 (396)
T ss_pred H
Confidence 3
No 28
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=96.16 E-value=0.022 Score=43.83 Aligned_cols=79 Identities=24% Similarity=0.163 Sum_probs=57.7
Q ss_pred CcceeeeecccCCCCeeEEeCcCcchhhhhc---cCceeCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHH-HHhhcCChh
Q psy9705 3 LVAKEFVACQINEPPGVLIVSPFAGAGEQMH---EALICNPYEIDAAAEVIHRALTMPEDERTLRMNYLR-KREKVHDVN 78 (140)
Q Consensus 3 Lva~Eyv~~q~~~~~g~LiLSEfaG~a~~L~---~ai~VNP~d~~~~A~ai~~AL~m~~~er~~r~~~l~-~~V~~~~~~ 78 (140)
++..|+++| .-++|.+...|..+.+. ..+.++|.|.++++++|.++++-+. .+.+..+..+ .....++..
T Consensus 290 ~~~~Ea~~~-----g~pvI~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 363 (374)
T cd03801 290 LVLLEAMAA-----GLPVVASDVGGIPEVVEDGETGLLVPPGDPEALAEAILRLLDDPE-LRRRLGEAARERVAERFSWD 363 (374)
T ss_pred chHHHHHHc-----CCcEEEeCCCChhHHhcCCcceEEeCCCCHHHHHHHHHHHHcChH-HHHHHHHHHHHHHHHhcCHH
Confidence 345566655 24788889888888885 3789999999999999999988654 3343334444 567778888
Q ss_pred HHHHHHHHH
Q psy9705 79 YWMRSFLKG 87 (140)
Q Consensus 79 ~W~~~~l~~ 87 (140)
.+++.+++-
T Consensus 364 ~~~~~~~~~ 372 (374)
T cd03801 364 RVAARTEEV 372 (374)
T ss_pred HHHHHHHHh
Confidence 888877654
No 29
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=96.14 E-value=0.016 Score=46.62 Aligned_cols=75 Identities=19% Similarity=0.135 Sum_probs=55.0
Q ss_pred ceeeeecccCCCCeeEEeCcCcchhhhhc---cCceeCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh-hcCChhHH
Q psy9705 5 AKEFVACQINEPPGVLIVSPFAGAGEQMH---EALICNPYEIDAAAEVIHRALTMPEDERTLRMNYLRKRE-KVHDVNYW 80 (140)
Q Consensus 5 a~Eyv~~q~~~~~g~LiLSEfaG~a~~L~---~ai~VNP~d~~~~A~ai~~AL~m~~~er~~r~~~l~~~V-~~~~~~~W 80 (140)
..|+++| .-++|.|...|..+.+. ..+.++|.|.++++++|.+.++ .++.+.+..+...+++ ..++...+
T Consensus 287 ~~EA~a~-----G~PvI~s~~~~~~e~i~~~~~g~~~~~~d~~~l~~~i~~l~~-~~~~~~~~~~~a~~~~~~~~s~~~~ 360 (367)
T cd05844 287 LLEAQAS-----GVPVVATRHGGIPEAVEDGETGLLVPEGDVAALAAALGRLLA-DPDLRARMGAAGRRRVEERFDLRRQ 360 (367)
T ss_pred HHHHHHc-----CCCEEEeCCCCchhheecCCeeEEECCCCHHHHHHHHHHHHc-CHHHHHHHHHHHHHHHHHHCCHHHH
Confidence 4455555 24788999999888773 3789999999999999999887 4555666556666666 45677777
Q ss_pred HHHHH
Q psy9705 81 MRSFL 85 (140)
Q Consensus 81 ~~~~l 85 (140)
++.+.
T Consensus 361 ~~~l~ 365 (367)
T cd05844 361 TAKLE 365 (367)
T ss_pred HHHHh
Confidence 66553
No 30
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=95.98 E-value=0.026 Score=44.46 Aligned_cols=67 Identities=19% Similarity=0.216 Sum_probs=53.5
Q ss_pred eEEeCcCcchhhhh-c--cCceeCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCChhHHHHHHHHH
Q psy9705 19 VLIVSPFAGAGEQM-H--EALICNPYEIDAAAEVIHRALTMPEDERTLRMNYLRKREKVHDVNYWMRSFLKG 87 (140)
Q Consensus 19 ~LiLSEfaG~a~~L-~--~ai~VNP~d~~~~A~ai~~AL~m~~~er~~r~~~l~~~V~~~~~~~W~~~~l~~ 87 (140)
|+|.|...| .+.+ . ..+.++|.|.++++++|...++- ++++.+..+..++++..++...+++.+.+-
T Consensus 295 PvI~~~~~~-~~~i~~~~~g~~~~~~d~~~~~~~l~~l~~~-~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 364 (366)
T cd03822 295 PVISTPVGH-AEEVLDGGTGLLVPPGDPAALAEAIRRLLAD-PELAQALRARAREYARAMSWERVAERYLRL 364 (366)
T ss_pred CEEecCCCC-hheeeeCCCcEEEcCCCHHHHHHHHHHHHcC-hHHHHHHHHHHHHHHhhCCHHHHHHHHHHH
Confidence 788888887 5555 2 37899999999999999999985 455666667778888889988888877654
No 31
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=95.97 E-value=0.019 Score=44.50 Aligned_cols=77 Identities=23% Similarity=0.281 Sum_probs=55.7
Q ss_pred CcceeeeecccCCCCeeEEeCcCcchhhhhc---cCceeCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-hhcCChh
Q psy9705 3 LVAKEFVACQINEPPGVLIVSPFAGAGEQMH---EALICNPYEIDAAAEVIHRALTMPEDERTLRMNYLRKR-EKVHDVN 78 (140)
Q Consensus 3 Lva~Eyv~~q~~~~~g~LiLSEfaG~a~~L~---~ai~VNP~d~~~~A~ai~~AL~m~~~er~~r~~~l~~~-V~~~~~~ 78 (140)
++..|+++| .-|+|.|...|..+.+. ..+.++|-|.++++++|.+.+. .++.+.+..+..+++ ...++..
T Consensus 278 ~~~~Ea~~~-----G~Pvi~s~~~~~~~~i~~~~~g~~~~~~~~~~~~~~i~~l~~-~~~~~~~~~~~~~~~~~~~~s~~ 351 (359)
T cd03808 278 RVLLEAMAM-----GRPVIATDVPGCREAVIDGVNGFLVPPGDAEALADAIERLIE-DPELRARMGQAARKRAEEEFDEE 351 (359)
T ss_pred hHHHHHHHc-----CCCEEEecCCCchhhhhcCcceEEECCCCHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHhcCHH
Confidence 344566655 23688899999988884 2689999999999999999664 455555555555666 6677777
Q ss_pred HHHHHHH
Q psy9705 79 YWMRSFL 85 (140)
Q Consensus 79 ~W~~~~l 85 (140)
.+++.++
T Consensus 352 ~~~~~~~ 358 (359)
T cd03808 352 IVVKKLL 358 (359)
T ss_pred HHHHHhh
Confidence 7776654
No 32
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=95.95 E-value=0.035 Score=45.83 Aligned_cols=81 Identities=16% Similarity=0.100 Sum_probs=56.7
Q ss_pred CcceeeeecccCCCCeeEEeCcCcchhhhhc---cCceeCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCChhH
Q psy9705 3 LVAKEFVACQINEPPGVLIVSPFAGAGEQMH---EALICNPYEIDAAAEVIHRALTMPEDERTLRMNYLRKREKVHDVNY 79 (140)
Q Consensus 3 Lva~Eyv~~q~~~~~g~LiLSEfaG~a~~L~---~ai~VNP~d~~~~A~ai~~AL~m~~~er~~r~~~l~~~V~~~~~~~ 79 (140)
++..|+++| .-|+|.|...|..+.+. ..+.++|.|.+++|++|.++++- ++++.+..+...+.+..++-..
T Consensus 317 ~~~lEAma~-----G~Pvi~~~~~~~~e~i~~~~~g~~~~~~d~~~la~~i~~~l~~-~~~~~~~~~~~~~~~~~fsw~~ 390 (405)
T TIGR03449 317 LVAMEAQAC-----GTPVVAARVGGLPVAVADGETGLLVDGHDPADWADALARLLDD-PRTRIRMGAAAVEHAAGFSWAA 390 (405)
T ss_pred hHHHHHHHc-----CCCEEEecCCCcHhhhccCCceEECCCCCHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHhCCHHH
Confidence 455666555 23678888888887774 26899999999999999999974 5555555555566676666666
Q ss_pred HHHHHHHHHH
Q psy9705 80 WMRSFLKGMG 89 (140)
Q Consensus 80 W~~~~l~~l~ 89 (140)
-++.+++-..
T Consensus 391 ~~~~~~~~y~ 400 (405)
T TIGR03449 391 TADGLLSSYR 400 (405)
T ss_pred HHHHHHHHHH
Confidence 6666554443
No 33
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=95.84 E-value=0.041 Score=44.82 Aligned_cols=79 Identities=15% Similarity=0.128 Sum_probs=56.3
Q ss_pred cceeeeecccCCCCeeEEeCcCcchhhhhc---cCceeCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh-hcCChhH
Q psy9705 4 VAKEFVACQINEPPGVLIVSPFAGAGEQMH---EALICNPYEIDAAAEVIHRALTMPEDERTLRMNYLRKRE-KVHDVNY 79 (140)
Q Consensus 4 va~Eyv~~q~~~~~g~LiLSEfaG~a~~L~---~ai~VNP~d~~~~A~ai~~AL~m~~~er~~r~~~l~~~V-~~~~~~~ 79 (140)
+..|+++| .-|+|.|...|..+.+. ..+.++|-|.+++|++|...++ .++++....++.++++ ..++...
T Consensus 288 ~~lEAma~-----G~Pvv~s~~~g~~e~i~~~~~g~~~~~~d~~~la~~i~~l~~-~~~~~~~~~~~a~~~~~~~fs~~~ 361 (374)
T TIGR03088 288 TILEAMAS-----GLPVIATAVGGNPELVQHGVTGALVPPGDAVALARALQPYVS-DPAARRAHGAAGRARAEQQFSINA 361 (374)
T ss_pred HHHHHHHc-----CCCEEEcCCCCcHHHhcCCCceEEeCCCCHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHhCCHHH
Confidence 34455555 23788899988888884 2689999999999999999887 4556666666666666 4667666
Q ss_pred HHHHHHHHH
Q psy9705 80 WMRSFLKGM 88 (140)
Q Consensus 80 W~~~~l~~l 88 (140)
-++.+.+-.
T Consensus 362 ~~~~~~~~y 370 (374)
T TIGR03088 362 MVAAYAGLY 370 (374)
T ss_pred HHHHHHHHH
Confidence 666555433
No 34
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=95.77 E-value=0.049 Score=43.77 Aligned_cols=80 Identities=19% Similarity=0.178 Sum_probs=56.2
Q ss_pred CcceeeeecccCCCCeeEEeCcCcchhhhhc---cCceeCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-hhcCChh
Q psy9705 3 LVAKEFVACQINEPPGVLIVSPFAGAGEQMH---EALICNPYEIDAAAEVIHRALTMPEDERTLRMNYLRKR-EKVHDVN 78 (140)
Q Consensus 3 Lva~Eyv~~q~~~~~g~LiLSEfaG~a~~L~---~ai~VNP~d~~~~A~ai~~AL~m~~~er~~r~~~l~~~-V~~~~~~ 78 (140)
++..|+++| .-++|.|...|..+.+. ..+.++|.|.++++++|...+. .++++.+-.++..++ ...++..
T Consensus 285 ~~~~EAma~-----g~PvI~s~~~~~~e~i~~~~~G~~~~~~~~~~l~~~i~~l~~-~~~~~~~~~~~~~~~~~~~fs~~ 358 (371)
T cd04962 285 LAALEAMAC-----GVPVVASNAGGIPEVVKHGETGFLVDVGDVEAMAEYALSLLE-DDELWQEFSRAARNRAAERFDSE 358 (371)
T ss_pred cHHHHHHHc-----CCCEEEeCCCCchhhhcCCCceEEcCCCCHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHhCCHH
Confidence 344555544 23788999999888884 2578999999999999999887 455555555555655 4566777
Q ss_pred HHHHHHHHHH
Q psy9705 79 YWMRSFLKGM 88 (140)
Q Consensus 79 ~W~~~~l~~l 88 (140)
..++.+.+-.
T Consensus 359 ~~~~~~~~~y 368 (371)
T cd04962 359 RIVPQYEALY 368 (371)
T ss_pred HHHHHHHHHH
Confidence 7666665543
No 35
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=95.53 E-value=0.042 Score=52.42 Aligned_cols=84 Identities=12% Similarity=0.101 Sum_probs=64.1
Q ss_pred CcceeeeecccCCCCeeEEeCcCcchhhhhc---cCceeCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCChhH
Q psy9705 3 LVAKEFVACQINEPPGVLIVSPFAGAGEQMH---EALICNPYEIDAAAEVIHRALTMPEDERTLRMNYLRKREKVHDVNY 79 (140)
Q Consensus 3 Lva~Eyv~~q~~~~~g~LiLSEfaG~a~~L~---~ai~VNP~d~~~~A~ai~~AL~m~~~er~~r~~~l~~~V~~~~~~~ 79 (140)
++..|..+| .-|+|.|...|..+.+. ..++|+|.|.+++|++|.+.|+ .++.+.+--+.-++.+..++-..
T Consensus 586 LvlLEAMAc-----GlPVVASdvGG~~EII~~g~nGlLVdP~D~eaLA~AL~~LL~-Dpelr~~m~~~gr~~v~~FSWe~ 659 (1050)
T TIGR02468 586 LTLIEAAAH-----GLPMVATKNGGPVDIHRVLDNGLLVDPHDQQAIADALLKLVA-DKQLWAECRQNGLKNIHLFSWPE 659 (1050)
T ss_pred HHHHHHHHh-----CCCEEEeCCCCcHHHhccCCcEEEECCCCHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHHCCHHH
Confidence 345555555 24789999888888774 3789999999999999999997 45555555555677788888888
Q ss_pred HHHHHHHHHHHhh
Q psy9705 80 WMRSFLKGMGTLI 92 (140)
Q Consensus 80 W~~~~l~~l~~~~ 92 (140)
-++.++..+....
T Consensus 660 ia~~yl~~i~~~~ 672 (1050)
T TIGR02468 660 HCKTYLSRIASCR 672 (1050)
T ss_pred HHHHHHHHHHHHh
Confidence 8888888777653
No 36
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=95.42 E-value=0.03 Score=44.56 Aligned_cols=67 Identities=22% Similarity=0.243 Sum_probs=53.4
Q ss_pred cceeeeecccCCCCeeEEeCcCcchhhhhc---cCceeCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcC
Q psy9705 4 VAKEFVACQINEPPGVLIVSPFAGAGEQMH---EALICNPYEIDAAAEVIHRALTMPEDERTLRMNYLRKREKVH 75 (140)
Q Consensus 4 va~Eyv~~q~~~~~g~LiLSEfaG~a~~L~---~ai~VNP~d~~~~A~ai~~AL~m~~~er~~r~~~l~~~V~~~ 75 (140)
+..|+++| .-|+|.|...|..+.+. ..+.++|.|.++++++|...+..+++++.+..+..++++.++
T Consensus 280 ~l~EA~a~-----G~PvI~~~~~~~~e~i~~~~~g~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~a~~~~~~~ 349 (355)
T cd03819 280 TAVEAQAM-----GRPVIASDHGGARETVRPGETGLLVPPGDAEALAQALDQILSLLPEGRAKMFAKARMCVETL 349 (355)
T ss_pred HHHHHHhc-----CCCEEEcCCCCcHHHHhCCCceEEeCCCCHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHh
Confidence 34566555 23678888888877774 368899999999999999999999999988888888887653
No 37
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=95.32 E-value=0.044 Score=46.20 Aligned_cols=67 Identities=13% Similarity=0.145 Sum_probs=50.4
Q ss_pred eeEEeCcCcchhhhhccC---ceeCC-CCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh-hcCChhHHHHHHH
Q psy9705 18 GVLIVSPFAGAGEQMHEA---LICNP-YEIDAAAEVIHRALTMPEDERTLRMNYLRKRE-KVHDVNYWMRSFL 85 (140)
Q Consensus 18 g~LiLSEfaG~a~~L~~a---i~VNP-~d~~~~A~ai~~AL~m~~~er~~r~~~l~~~V-~~~~~~~W~~~~l 85 (140)
-|+|.|...|..+.+.+. ++++| .|.+++|++|...++ +++++.+-.+..++++ .+++...+.++|+
T Consensus 335 ~PVIas~vgg~~e~i~~~~~G~l~~~~~~~~~la~~I~~ll~-~~~~~~~m~~~ar~~~~~~f~~~~~~~~~~ 406 (407)
T cd04946 335 IPVIATNVGGTPEIVDNGGNGLLLSKDPTPNELVSSLSKFID-NEEEYQTMREKAREKWEENFNASKNYREFA 406 (407)
T ss_pred CCEEeCCCCCcHHHhcCCCcEEEeCCCCCHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHHcCHHHhHHHhc
Confidence 378889999998888543 66665 589999999999988 6667666666666666 5677777777664
No 38
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=95.26 E-value=0.07 Score=45.36 Aligned_cols=75 Identities=15% Similarity=0.172 Sum_probs=52.8
Q ss_pred CcceeeeecccCCCCeeEEeCcCcchhhhhc---cCceeCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhh-cCChh
Q psy9705 3 LVAKEFVACQINEPPGVLIVSPFAGAGEQMH---EALICNPYEIDAAAEVIHRALTMPEDERTLRMNYLRKREK-VHDVN 78 (140)
Q Consensus 3 Lva~Eyv~~q~~~~~g~LiLSEfaG~a~~L~---~ai~VNP~d~~~~A~ai~~AL~m~~~er~~r~~~l~~~V~-~~~~~ 78 (140)
++..|+.+| .-|+|.|...|..+.+. ..++|+|-|.+++|++|.+.++- ++++.+..+..++++. .++..
T Consensus 355 ~~~lEAma~-----G~PvV~s~~gg~~eiv~~~~~G~lv~~~d~~~la~~i~~ll~~-~~~~~~~~~~a~~~~~~~fsw~ 428 (439)
T TIGR02472 355 LTLLEAAAC-----GLPIVATDDGGPRDIIANCRNGLLVDVLDLEAIASALEDALSD-SSQWQLWSRNGIEGVRRHYSWD 428 (439)
T ss_pred cHHHHHHHh-----CCCEEEeCCCCcHHHhcCCCcEEEeCCCCHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhCCHH
Confidence 345566655 24789999999888885 26899999999999999999984 5566665566666553 34444
Q ss_pred HHHHH
Q psy9705 79 YWMRS 83 (140)
Q Consensus 79 ~W~~~ 83 (140)
.=++.
T Consensus 429 ~~~~~ 433 (439)
T TIGR02472 429 AHVEK 433 (439)
T ss_pred HHHHH
Confidence 33333
No 39
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=95.17 E-value=0.078 Score=43.46 Aligned_cols=80 Identities=16% Similarity=0.158 Sum_probs=57.7
Q ss_pred CCcceeeeecccCCCCeeEEeCcCcchhhhhc-c--CceeCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh-hcCCh
Q psy9705 2 NLVAKEFVACQINEPPGVLIVSPFAGAGEQMH-E--ALICNPYEIDAAAEVIHRALTMPEDERTLRMNYLRKRE-KVHDV 77 (140)
Q Consensus 2 NLva~Eyv~~q~~~~~g~LiLSEfaG~a~~L~-~--ai~VNP~d~~~~A~ai~~AL~m~~~er~~r~~~l~~~V-~~~~~ 77 (140)
.++..|+.+| .-|+|.|...|..+.+. + .+.++| .++.|++|.+.++. ++++.+..+..++++ ..++.
T Consensus 287 g~~~lEA~a~-----G~Pvv~s~~~~~~~~i~~~~~g~~~~~--~~~~a~~i~~ll~~-~~~~~~~~~~a~~~~~~~~s~ 358 (372)
T cd03792 287 GLTVTEALWK-----GKPVIAGPVGGIPLQIEDGETGFLVDT--VEEAAVRILYLLRD-PELRRKMGANAREHVRENFLI 358 (372)
T ss_pred CHHHHHHHHc-----CCCEEEcCCCCchhhcccCCceEEeCC--cHHHHHHHHHHHcC-HHHHHHHHHHHHHHHHHHcCH
Confidence 4567787777 24789999999888774 2 456664 57889999999986 556666666666766 46788
Q ss_pred hHHHHHHHHHHH
Q psy9705 78 NYWMRSFLKGMG 89 (140)
Q Consensus 78 ~~W~~~~l~~l~ 89 (140)
...+++++.-+.
T Consensus 359 ~~~~~~~~~~~~ 370 (372)
T cd03792 359 TRHLKDYLYLIS 370 (372)
T ss_pred HHHHHHHHHHHH
Confidence 888877776554
No 40
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=95.13 E-value=0.065 Score=41.83 Aligned_cols=77 Identities=18% Similarity=0.162 Sum_probs=54.8
Q ss_pred CCcceeeeecccCCCCeeEEeCcCcchhhhhc-cCceeCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-hhcCChhH
Q psy9705 2 NLVAKEFVACQINEPPGVLIVSPFAGAGEQMH-EALICNPYEIDAAAEVIHRALTMPEDERTLRMNYLRKR-EKVHDVNY 79 (140)
Q Consensus 2 NLva~Eyv~~q~~~~~g~LiLSEfaG~a~~L~-~ai~VNP~d~~~~A~ai~~AL~m~~~er~~r~~~l~~~-V~~~~~~~ 79 (140)
.++..|+++| .-|+|.|...|..+.+. ++..+-|.+.++++++|.+.++.+ +++.+..+...++ ..+++...
T Consensus 295 ~~~~~Eama~-----G~PvI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~-~~~~~~~~~~~~~~~~~~s~~~ 368 (375)
T cd03821 295 GIVVAEALAC-----GTPVVTTDKVPWQELIEYGCGWVVDDDVDALAAALRRALELP-QRLKAMGENGRALVEERFSWTA 368 (375)
T ss_pred CcHHHHHHhc-----CCCEEEcCCCCHHHHhhcCceEEeCCChHHHHHHHHHHHhCH-HHHHHHHHHHHHHHHHhcCHHH
Confidence 3556777766 23788899888888875 455566677799999999999987 5666666666666 45566555
Q ss_pred HHHHH
Q psy9705 80 WMRSF 84 (140)
Q Consensus 80 W~~~~ 84 (140)
-++.+
T Consensus 369 ~~~~~ 373 (375)
T cd03821 369 IAQQL 373 (375)
T ss_pred HHHHh
Confidence 55544
No 41
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=95.00 E-value=0.099 Score=41.54 Aligned_cols=80 Identities=20% Similarity=0.199 Sum_probs=55.3
Q ss_pred CcceeeeecccCCCCeeEEeCcCcchhhhhc---cCceeCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhh-cCChh
Q psy9705 3 LVAKEFVACQINEPPGVLIVSPFAGAGEQMH---EALICNPYEIDAAAEVIHRALTMPEDERTLRMNYLRKREK-VHDVN 78 (140)
Q Consensus 3 Lva~Eyv~~q~~~~~g~LiLSEfaG~a~~L~---~ai~VNP~d~~~~A~ai~~AL~m~~~er~~r~~~l~~~V~-~~~~~ 78 (140)
++..|+.+| .-|+|.|.-.|..+.+. ..+.+++.|.+++|++|.+.+. .++++.+..+...+++. .++..
T Consensus 279 ~~~~Eam~~-----g~PvI~~~~~~~~e~~~~~~~g~~~~~~~~~~~~~~l~~l~~-~~~~~~~~~~~~~~~~~~~~s~~ 352 (365)
T cd03825 279 NTAIEALAC-----GTPVVAFDVGGIPDIVDHGVTGYLAKPGDPEDLAEGIEWLLA-DPDEREELGEAARELAENEFDSR 352 (365)
T ss_pred HHHHHHHhc-----CCCEEEecCCCChhheeCCCceEEeCCCCHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHhcCHH
Confidence 344566555 23677787777777774 2678999999999999999986 45556655666666663 56767
Q ss_pred HHHHHHHHHH
Q psy9705 79 YWMRSFLKGM 88 (140)
Q Consensus 79 ~W~~~~l~~l 88 (140)
..++.+++-.
T Consensus 353 ~~~~~~~~~y 362 (365)
T cd03825 353 VQAKRYLSLY 362 (365)
T ss_pred HHHHHHHHHH
Confidence 7777666543
No 42
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=94.98 E-value=0.11 Score=42.31 Aligned_cols=81 Identities=17% Similarity=0.117 Sum_probs=58.2
Q ss_pred cceeeeecccCCCCeeEEeCcCcchhhhhc---cCceeCCCCH------HHHHHHHHHHhCCCHHHHHHHHHHHHHHh-h
Q psy9705 4 VAKEFVACQINEPPGVLIVSPFAGAGEQMH---EALICNPYEI------DAAAEVIHRALTMPEDERTLRMNYLRKRE-K 73 (140)
Q Consensus 4 va~Eyv~~q~~~~~g~LiLSEfaG~a~~L~---~ai~VNP~d~------~~~A~ai~~AL~m~~~er~~r~~~l~~~V-~ 73 (140)
+..|+++| .-|+|.|-..|..+.+. ..+.++|-|. ++++++|.+.++ .++++.+..+..++.+ .
T Consensus 296 ~~lEA~a~-----G~PvI~s~~~~~~e~i~~~~~G~~~~~~~~~~~~~~~~l~~~i~~l~~-~~~~~~~~~~~a~~~~~~ 369 (388)
T TIGR02149 296 VNLEAMAC-----GTPVVASATGGIPEVVVDGETGFLVPPDNSDADGFQAELAKAINILLA-DPELAKKMGIAGRKRAEE 369 (388)
T ss_pred HHHHHHHc-----CCCEEEeCCCCHHHHhhCCCceEEcCCCCCcccchHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHH
Confidence 34565555 24788899888888774 2688999998 999999999876 5666666556666655 5
Q ss_pred cCChhHHHHHHHHHHHH
Q psy9705 74 VHDVNYWMRSFLKGMGT 90 (140)
Q Consensus 74 ~~~~~~W~~~~l~~l~~ 90 (140)
+++...+++++++-..+
T Consensus 370 ~~s~~~~~~~~~~~y~~ 386 (388)
T TIGR02149 370 EFSWGSIAKKTVEMYRK 386 (388)
T ss_pred hCCHHHHHHHHHHHHHh
Confidence 67888888887765543
No 43
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=94.94 E-value=0.08 Score=45.57 Aligned_cols=75 Identities=21% Similarity=0.170 Sum_probs=52.6
Q ss_pred CcceeeeecccCCCCeeEEeCcCcchhhhhcc---------CceeCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhh
Q psy9705 3 LVAKEFVACQINEPPGVLIVSPFAGAGEQMHE---------ALICNPYEIDAAAEVIHRALTMPEDERTLRMNYLRKREK 73 (140)
Q Consensus 3 Lva~Eyv~~q~~~~~g~LiLSEfaG~a~~L~~---------ai~VNP~d~~~~A~ai~~AL~m~~~er~~r~~~l~~~V~ 73 (140)
++..|+++| .-|+|.|...|+.+.+.+ .+.+.|-|.+++|++|.+.++ .++++.+..+..++++.
T Consensus 385 ~~vlEAma~-----G~PVVatd~g~~~elv~~~~~~~~g~~G~lv~~~d~~~la~ai~~ll~-~~~~~~~~~~~a~~~v~ 458 (475)
T cd03813 385 LVILEAMAA-----GIPVVATDVGSCRELIEGADDEALGPAGEVVPPADPEALARAILRLLK-DPELRRAMGEAGRKRVE 458 (475)
T ss_pred hHHHHHHHc-----CCCEEECCCCChHHHhcCCcccccCCceEEECCCCHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHH
Confidence 455677666 236788888888877744 578999999999999999987 45566666666666666
Q ss_pred cC-ChhHHHHH
Q psy9705 74 VH-DVNYWMRS 83 (140)
Q Consensus 74 ~~-~~~~W~~~ 83 (140)
++ +....+++
T Consensus 459 ~~~s~~~~~~~ 469 (475)
T cd03813 459 RYYTLERMIDS 469 (475)
T ss_pred HhCCHHHHHHH
Confidence 54 32444433
No 44
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=94.73 E-value=0.13 Score=42.95 Aligned_cols=80 Identities=20% Similarity=0.127 Sum_probs=54.4
Q ss_pred CcceeeeecccCCCCeeEEeCcCcchhhhhc-c---CceeCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-hhcCCh
Q psy9705 3 LVAKEFVACQINEPPGVLIVSPFAGAGEQMH-E---ALICNPYEIDAAAEVIHRALTMPEDERTLRMNYLRKR-EKVHDV 77 (140)
Q Consensus 3 Lva~Eyv~~q~~~~~g~LiLSEfaG~a~~L~-~---ai~VNP~d~~~~A~ai~~AL~m~~~er~~r~~~l~~~-V~~~~~ 77 (140)
++..|+++| .-++|.|...|..+.+. + -+.+.|.|.+++|++|...++.+.. .+..+..+++ ..+++.
T Consensus 292 ~~~lEAma~-----G~PVI~s~~gg~~Eiv~~~~~G~~l~~~~d~~~la~~I~~ll~d~~~--~~~~~~ar~~~~~~fsw 364 (380)
T PRK15484 292 MVAVEAMAA-----GKPVLASTKGGITEFVLEGITGYHLAEPMTSDSIISDINRTLADPEL--TQIAEQAKDFVFSKYSW 364 (380)
T ss_pred cHHHHHHHc-----CCCEEEeCCCCcHhhcccCCceEEEeCCCCHHHHHHHHHHHHcCHHH--HHHHHHHHHHHHHhCCH
Confidence 345566655 24678888888887763 2 2467899999999999999987642 3344444444 456677
Q ss_pred hHHHHHHHHHHH
Q psy9705 78 NYWMRSFLKGMG 89 (140)
Q Consensus 78 ~~W~~~~l~~l~ 89 (140)
..-++++.+-+.
T Consensus 365 ~~~a~~~~~~l~ 376 (380)
T PRK15484 365 EGVTQRFEEQIH 376 (380)
T ss_pred HHHHHHHHHHHH
Confidence 777777666654
No 45
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=94.73 E-value=0.044 Score=44.23 Aligned_cols=52 Identities=17% Similarity=0.188 Sum_probs=41.6
Q ss_pred CCcceeeeecccCCCCeeEEeCcCcchhhhhc---cCceeCCCCHHHHHHHHHHHhCCCH
Q psy9705 2 NLVAKEFVACQINEPPGVLIVSPFAGAGEQMH---EALICNPYEIDAAAEVIHRALTMPE 58 (140)
Q Consensus 2 NLva~Eyv~~q~~~~~g~LiLSEfaG~a~~L~---~ai~VNP~d~~~~A~ai~~AL~m~~ 58 (140)
.+++.|+++|. -|+|.|...|..+.+. ..+.+.|-|.+++|++|...++.+.
T Consensus 274 g~~~~Eama~G-----~Pvi~~~~~~~~e~i~~~~~G~~~~~~~~~~la~~i~~l~~~~~ 328 (351)
T cd03804 274 GIVPVEAMASG-----TPVIAYGKGGALETVIDGVTGILFEEQTVESLAAAVERFEKNED 328 (351)
T ss_pred CchHHHHHHcC-----CCEEEeCCCCCcceeeCCCCEEEeCCCCHHHHHHHHHHHHhCcc
Confidence 46678888772 3678888888877774 2688999999999999999998774
No 46
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=94.51 E-value=0.087 Score=42.93 Aligned_cols=73 Identities=18% Similarity=0.207 Sum_probs=50.2
Q ss_pred CcceeeeecccCCCCeeEEeCcCcchhhhhcc---CceeCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh-hcCChh
Q psy9705 3 LVAKEFVACQINEPPGVLIVSPFAGAGEQMHE---ALICNPYEIDAAAEVIHRALTMPEDERTLRMNYLRKRE-KVHDVN 78 (140)
Q Consensus 3 Lva~Eyv~~q~~~~~g~LiLSEfaG~a~~L~~---ai~VNP~d~~~~A~ai~~AL~m~~~er~~r~~~l~~~V-~~~~~~ 78 (140)
+++.|+++| .-|+|.|...|..+.+.+ .+.++| |.+++|++|.+.++-+. ++.+..+...+++ .+++..
T Consensus 314 ~~~lEAma~-----G~PvI~s~~~~~~e~i~~~~~g~~~~~-~~~~~a~~i~~l~~~~~-~~~~~~~~a~~~~~~~~s~~ 386 (392)
T cd03805 314 IVPLEAMYA-----GKPVIACNSGGPLETVVDGETGFLCEP-TPEEFAEAMLKLANDPD-LADRMGAAGRKRVKEKFSTE 386 (392)
T ss_pred chHHHHHHc-----CCCEEEECCCCcHHHhccCCceEEeCC-CHHHHHHHHHHHHhChH-HHHHHHHHHHHHHHHhcCHH
Confidence 355677766 246888888888777742 566777 99999999999998754 5555555555655 445655
Q ss_pred HHHH
Q psy9705 79 YWMR 82 (140)
Q Consensus 79 ~W~~ 82 (140)
..++
T Consensus 387 ~~~~ 390 (392)
T cd03805 387 AFAE 390 (392)
T ss_pred HHhh
Confidence 5544
No 47
>PLN00142 sucrose synthase
Probab=94.46 E-value=0.11 Score=48.59 Aligned_cols=70 Identities=14% Similarity=0.061 Sum_probs=52.5
Q ss_pred eeEEeCcCcchhhhhcc---CceeCCCCHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHh-hcCChhHHHHHHHHH
Q psy9705 18 GVLIVSPFAGAGEQMHE---ALICNPYEIDAAAEVIHRALT---MPEDERTLRMNYLRKRE-KVHDVNYWMRSFLKG 87 (140)
Q Consensus 18 g~LiLSEfaG~a~~L~~---ai~VNP~d~~~~A~ai~~AL~---m~~~er~~r~~~l~~~V-~~~~~~~W~~~~l~~ 87 (140)
-|+|.|...|..+.+.+ .++|+|.|.+++|++|..++. ..++.+.+-.+.-++.| .+++-...++++++-
T Consensus 691 lPVVATdvGG~~EIV~dG~tG~LV~P~D~eaLA~aI~~lLekLl~Dp~lr~~mg~~Ar~rv~e~FSWe~~A~rll~L 767 (815)
T PLN00142 691 LPTFATCQGGPAEIIVDGVSGFHIDPYHGDEAANKIADFFEKCKEDPSYWNKISDAGLQRIYECYTWKIYAERLLTL 767 (815)
T ss_pred CCEEEcCCCCHHHHhcCCCcEEEeCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 37899999999888742 689999999999999998764 45666665555556666 566777777776653
No 48
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=94.39 E-value=0.11 Score=48.26 Aligned_cols=81 Identities=17% Similarity=0.117 Sum_probs=56.9
Q ss_pred CcceeeeecccCCCCeeEEeCcCcchhhhhc---cCceeCCCCHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHh-hcC
Q psy9705 3 LVAKEFVACQINEPPGVLIVSPFAGAGEQMH---EALICNPYEIDAAAEVIHRALT---MPEDERTLRMNYLRKRE-KVH 75 (140)
Q Consensus 3 Lva~Eyv~~q~~~~~g~LiLSEfaG~a~~L~---~ai~VNP~d~~~~A~ai~~AL~---m~~~er~~r~~~l~~~V-~~~ 75 (140)
||+.|..+| .-|+|.|...|..+.+. ..++|+|.|.+++|++|..+++ -.++.+.+-.+.-.+.| .++
T Consensus 658 LvvLEAMAc-----GlPVVAT~~GG~~EiV~dg~tGfLVdp~D~eaLA~aL~~ll~kll~dp~~~~~ms~~a~~rV~~~F 732 (784)
T TIGR02470 658 LTVLEAMTC-----GLPTFATRFGGPLEIIQDGVSGFHIDPYHGEEAAEKIVDFFEKCDEDPSYWQKISQGGLQRIYEKY 732 (784)
T ss_pred HHHHHHHHc-----CCCEEEcCCCCHHHHhcCCCcEEEeCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhC
Confidence 344555444 34788999999999884 2689999999999999999875 34555555455545655 556
Q ss_pred ChhHHHHHHHHHH
Q psy9705 76 DVNYWMRSFLKGM 88 (140)
Q Consensus 76 ~~~~W~~~~l~~l 88 (140)
+-..-+++.++-.
T Consensus 733 SW~~~A~~ll~l~ 745 (784)
T TIGR02470 733 TWKIYSERLLTLA 745 (784)
T ss_pred CHHHHHHHHHHHH
Confidence 7677777765443
No 49
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=93.87 E-value=0.13 Score=40.21 Aligned_cols=67 Identities=19% Similarity=0.156 Sum_probs=47.3
Q ss_pred CcceeeeecccCCCCeeEEeCcCcchhhhhc---cCceeCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCC
Q psy9705 3 LVAKEFVACQINEPPGVLIVSPFAGAGEQMH---EALICNPYEIDAAAEVIHRALTMPEDERTLRMNYLRKREKVHD 76 (140)
Q Consensus 3 Lva~Eyv~~q~~~~~g~LiLSEfaG~a~~L~---~ai~VNP~d~~~~A~ai~~AL~m~~~er~~r~~~l~~~V~~~~ 76 (140)
++..|+++| .-|+|.+...|..+.+. ..+.++|.|. +++++|.+.++++... ++..+...+++..++
T Consensus 293 ~~~~Ea~~~-----g~PvI~~~~~~~~~~i~~~~~g~~~~~~~~-~~~~~i~~l~~~~~~~-~~~~~~~~~~~~~~~ 362 (374)
T cd03817 293 LVLLEAMAA-----GLPVVAVDAPGLPDLVADGENGFLFPPGDE-ALAEALLRLLQDPELR-RRLSKNAEESAEKFS 362 (374)
T ss_pred hHHHHHHHc-----CCcEEEeCCCChhhheecCceeEEeCCCCH-HHHHHHHHHHhChHHH-HHHHHHHHHHHHHHH
Confidence 344566655 24677888877777764 3789999988 9999999999887643 445555566666554
No 50
>PHA01630 putative group 1 glycosyl transferase
Probab=93.71 E-value=0.23 Score=41.22 Aligned_cols=81 Identities=14% Similarity=0.033 Sum_probs=52.0
Q ss_pred CcceeeeecccCCCCeeEEeCcCcchhhhhcc-----------------------CceeCCCCHHHHHHHHHHHhCCC-H
Q psy9705 3 LVAKEFVACQINEPPGVLIVSPFAGAGEQMHE-----------------------ALICNPYEIDAAAEVIHRALTMP-E 58 (140)
Q Consensus 3 Lva~Eyv~~q~~~~~g~LiLSEfaG~a~~L~~-----------------------ai~VNP~d~~~~A~ai~~AL~m~-~ 58 (140)
+++.|.++| .-|+|.|.-.|..+.+.+ .+.++| |.++.+++|.++|.-+ +
T Consensus 224 l~~lEAMA~-----G~PVIas~~gg~~E~i~~~~ng~lv~~~~~~~~~~~~~~~~G~~v~~-~~~~~~~~ii~~l~~~~~ 297 (331)
T PHA01630 224 IPVIEALAL-----GLDVVVTEKGAWSEWVLSNLDVYWIKSGRKPKLWYTNPIHVGYFLDP-DIEDAYQKLLEALANWTP 297 (331)
T ss_pred hHHHHHHHc-----CCCEEEeCCCCchhhccCCCceEEeeecccccccccCCcccccccCC-CHHHHHHHHHHHHhCCCH
Confidence 456677666 236777777666665532 334556 7899999999999864 3
Q ss_pred HHHH-HHHHHHHHHhhcCChhHHHHHHHHHHH
Q psy9705 59 DERT-LRMNYLRKREKVHDVNYWMRSFLKGMG 89 (140)
Q Consensus 59 ~er~-~r~~~l~~~V~~~~~~~W~~~~l~~l~ 89 (140)
++++ ..-.....+..+++....++.+++-+.
T Consensus 298 ~~~~~~~~~~~~~~~~~fs~~~ia~k~~~l~~ 329 (331)
T PHA01630 298 EKKKENLEGRAILYRENYSYNAIAKMWEKILE 329 (331)
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 3433 333344446778888888877776553
No 51
>PLN02949 transferase, transferring glycosyl groups
Probab=93.32 E-value=0.3 Score=42.51 Aligned_cols=82 Identities=21% Similarity=0.293 Sum_probs=55.6
Q ss_pred CcceeeeecccCCCCeeEEeCcCcchh-hhhc----c--CceeCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcC
Q psy9705 3 LVAKEFVACQINEPPGVLIVSPFAGAG-EQMH----E--ALICNPYEIDAAAEVIHRALTMPEDERTLRMNYLRKREKVH 75 (140)
Q Consensus 3 Lva~Eyv~~q~~~~~g~LiLSEfaG~a-~~L~----~--ai~VNP~d~~~~A~ai~~AL~m~~~er~~r~~~l~~~V~~~ 75 (140)
+++.|+++|- -++|.+-..|.. +... | .++++ |.+++|++|.+.+++++++|.+-.+...+.+.+.
T Consensus 369 ivvlEAMA~G-----~PVIa~~~gGp~~eIV~~~~~g~tG~l~~--~~~~la~ai~~ll~~~~~~r~~m~~~ar~~~~~F 441 (463)
T PLN02949 369 ISVVEYMAAG-----AVPIAHNSAGPKMDIVLDEDGQQTGFLAT--TVEEYADAILEVLRMRETERLEIAAAARKRANRF 441 (463)
T ss_pred hHHHHHHHcC-----CcEEEeCCCCCcceeeecCCCCcccccCC--CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHc
Confidence 3556666552 245555555543 1211 1 23343 8999999999999999888877667777788888
Q ss_pred ChhHHHHHHHHHHHHh
Q psy9705 76 DVNYWMRSFLKGMGTL 91 (140)
Q Consensus 76 ~~~~W~~~~l~~l~~~ 91 (140)
+...-++++.+.+...
T Consensus 442 S~e~~~~~~~~~i~~l 457 (463)
T PLN02949 442 SEQRFNEDFKDAIRPI 457 (463)
T ss_pred CHHHHHHHHHHHHHHH
Confidence 8888888887766654
No 52
>PRK10307 putative glycosyl transferase; Provisional
Probab=93.27 E-value=0.44 Score=39.63 Aligned_cols=80 Identities=15% Similarity=0.190 Sum_probs=57.6
Q ss_pred eeeeecccCCCCeeEEeCcCcch--hhhhc-cCceeCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhh-cCChhHHH
Q psy9705 6 KEFVACQINEPPGVLIVSPFAGA--GEQMH-EALICNPYEIDAAAEVIHRALTMPEDERTLRMNYLRKREK-VHDVNYWM 81 (140)
Q Consensus 6 ~Eyv~~q~~~~~g~LiLSEfaG~--a~~L~-~ai~VNP~d~~~~A~ai~~AL~m~~~er~~r~~~l~~~V~-~~~~~~W~ 81 (140)
.||.+| .-++|.|...|. .+... ..+.+.|.|.+++|++|.+.++. ++++.+..+..++++. .++...-+
T Consensus 325 ~eama~-----G~PVi~s~~~g~~~~~~i~~~G~~~~~~d~~~la~~i~~l~~~-~~~~~~~~~~a~~~~~~~fs~~~~~ 398 (412)
T PRK10307 325 TNMLAS-----GRNVVATAEPGTELGQLVEGIGVCVEPESVEALVAAIAALARQ-ALLRPKLGTVAREYAERTLDKENVL 398 (412)
T ss_pred HHHHHc-----CCCEEEEeCCCchHHHHHhCCcEEeCCCCHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHHcCHHHHH
Confidence 466555 236777776663 34443 47899999999999999998775 4566666666677765 57888888
Q ss_pred HHHHHHHHHh
Q psy9705 82 RSFLKGMGTL 91 (140)
Q Consensus 82 ~~~l~~l~~~ 91 (140)
+++++.+.+.
T Consensus 399 ~~~~~~~~~~ 408 (412)
T PRK10307 399 RQFIADIRGL 408 (412)
T ss_pred HHHHHHHHHH
Confidence 8888877765
No 53
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=92.65 E-value=0.35 Score=40.09 Aligned_cols=76 Identities=12% Similarity=0.161 Sum_probs=45.7
Q ss_pred ceeeeecccCCCCeeEEeCcCcchhhhhccCceeCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCChhHHHHHH
Q psy9705 5 AKEFVACQINEPPGVLIVSPFAGAGEQMHEALICNPYEIDAAAEVIHRALTMPEDERTLRMNYLRKREKVHDVNYWMRSF 84 (140)
Q Consensus 5 a~Eyv~~q~~~~~g~LiLSEfaG~a~~L~~ai~VNP~d~~~~A~ai~~AL~m~~~er~~r~~~l~~~V~~~~~~~W~~~~ 84 (140)
-+||.+|- -++|.+.+.+.-. ..+...+-|-|.++++++|.++|.-+..++.++.. +.+..||-+.=++.+
T Consensus 295 l~EylA~G-----~PVVat~~~~~~~-~~~~~~~~~~d~~~~~~ai~~~l~~~~~~~~~~~~---~~~~~~sW~~~a~~~ 365 (373)
T cd04950 295 LFEYLAAG-----KPVVATPLPEVRR-YEDEVVLIADDPEEFVAAIEKALLEDGPARERRRL---RLAAQNSWDARAAEM 365 (373)
T ss_pred HHHHhccC-----CCEEecCcHHHHh-hcCcEEEeCCCHHHHHHHHHHHHhcCCchHHHHHH---HHHHHCCHHHHHHHH
Confidence 46888772 3556666544433 33334445669999999999998766544443322 256666655555555
Q ss_pred HHHHH
Q psy9705 85 LKGMG 89 (140)
Q Consensus 85 l~~l~ 89 (140)
+..|.
T Consensus 366 ~~~l~ 370 (373)
T cd04950 366 LEALQ 370 (373)
T ss_pred HHHHH
Confidence 54443
No 54
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=92.59 E-value=0.1 Score=37.68 Aligned_cols=40 Identities=25% Similarity=0.478 Sum_probs=33.7
Q ss_pred eeEEeCcCcchhhhhc-cC--ceeCCCCHHHHHHHHHHHhCCC
Q psy9705 18 GVLIVSPFAGAGEQMH-EA--LICNPYEIDAAAEVIHRALTMP 57 (140)
Q Consensus 18 g~LiLSEfaG~a~~L~-~a--i~VNP~d~~~~A~ai~~AL~m~ 57 (140)
-++|+|.-.|..+.+. +. +.++|.|+++++++|.+++..+
T Consensus 117 ~pvI~~~~~~~~e~~~~~~~g~~~~~~~~~~l~~~i~~~l~~~ 159 (172)
T PF00534_consen 117 CPVIASDIGGNNEIINDGVNGFLFDPNDIEELADAIEKLLNDP 159 (172)
T ss_dssp -EEEEESSTHHHHHSGTTTSEEEESTTSHHHHHHHHHHHHHHH
T ss_pred cceeeccccCCceeeccccceEEeCCCCHHHHHHHHHHHHCCH
Confidence 4788899777777775 33 7999999999999999999987
No 55
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=92.12 E-value=0.32 Score=39.46 Aligned_cols=63 Identities=16% Similarity=0.084 Sum_probs=44.7
Q ss_pred eEEeCcCc-chhhhhc---cCceeCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCChhHHHH
Q psy9705 19 VLIVSPFA-GAGEQMH---EALICNPYEIDAAAEVIHRALTMPEDERTLRMNYLRKREKVHDVNYWMR 82 (140)
Q Consensus 19 ~LiLSEfa-G~a~~L~---~ai~VNP~d~~~~A~ai~~AL~m~~~er~~r~~~l~~~V~~~~~~~W~~ 82 (140)
|+|.+... |..+.+. ..++|.|.|.+++|++|...+.-+ +.+.+..+..++....++...+++
T Consensus 304 PvI~~~~~~g~~~~v~~~~~G~lv~~~d~~~la~~i~~ll~~~-~~~~~~~~~a~~~~~~~s~~~~~~ 370 (372)
T cd04949 304 PVISYDVNYGPSEIIEDGENGYLVPKGDIEALAEAIIELLNDP-KLLQKFSEAAYENAERYSEENVWE 370 (372)
T ss_pred CEEEecCCCCcHHHcccCCCceEeCCCcHHHHHHHHHHHHcCH-HHHHHHHHHHHHHHHHhhHHHHHh
Confidence 67777765 6777663 368999999999999999999865 455555555555555555554443
No 56
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=91.61 E-value=0.68 Score=38.43 Aligned_cols=82 Identities=11% Similarity=0.221 Sum_probs=50.9
Q ss_pred cceeeeecccCCCCeeEEeCcCcchhhhhc-c-CceeCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCChhHHH
Q psy9705 4 VAKEFVACQINEPPGVLIVSPFAGAGEQMH-E-ALICNPYEIDAAAEVIHRALTMPEDERTLRMNYLRKREKVHDVNYWM 81 (140)
Q Consensus 4 va~Eyv~~q~~~~~g~LiLSEfaG~a~~L~-~-ai~VNP~d~~~~A~ai~~AL~m~~~er~~r~~~l~~~V~~~~~~~W~ 81 (140)
+..|+++| .-++|.|...|..+.+. + .+.+.| |.++++++|.+++..+.+.+....+........++...=+
T Consensus 285 ~~~EAma~-----G~PVI~s~~gg~~e~i~~~~~~~~~~-~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~fs~~~~~ 358 (398)
T cd03796 285 AIVEAASC-----GLLVVSTRVGGIPEVLPPDMILLAEP-DVESIVRKLEEAISILRTGKHDPWSFHNRVKKMYSWEDVA 358 (398)
T ss_pred HHHHHHHc-----CCCEEECCCCCchhheeCCceeecCC-CHHHHHHHHHHHHhChhhhhhHHHHHHHHHHhhCCHHHHH
Confidence 34455555 24678899988888774 3 455666 9999999999999976655332222222334445555555
Q ss_pred HHHHHHHHHh
Q psy9705 82 RSFLKGMGTL 91 (140)
Q Consensus 82 ~~~l~~l~~~ 91 (140)
+++++-..+.
T Consensus 359 ~~~~~~y~~l 368 (398)
T cd03796 359 KRTEKVYDRI 368 (398)
T ss_pred HHHHHHHHHH
Confidence 5555544443
No 57
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=91.33 E-value=0.37 Score=38.08 Aligned_cols=56 Identities=23% Similarity=0.249 Sum_probs=41.0
Q ss_pred eeEEeCcCcchhhhhc----cCceeCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhc
Q psy9705 18 GVLIVSPFAGAGEQMH----EALICNPYEIDAAAEVIHRALTMPEDERTLRMNYLRKREKV 74 (140)
Q Consensus 18 g~LiLSEfaG~a~~L~----~ai~VNP~d~~~~A~ai~~AL~m~~~er~~r~~~l~~~V~~ 74 (140)
-|+|.|.-.|..+.+. ..+.++|.|.++++++|.+.++. ++++.+..+..++++.+
T Consensus 290 ~Pvi~~~~~~~~~~i~~~~~~g~~~~~~d~~~~~~~i~~l~~~-~~~~~~~~~~~~~~~~~ 349 (357)
T cd03795 290 KPVISTEIGTGGSYVNLHGVTGLVVPPGDPAALAEAIRRLLED-PELRERLGEAARERAEE 349 (357)
T ss_pred CCEEecCCCCchhHHhhCCCceEEeCCCCHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHH
Confidence 3678888777777653 26788999999999999999985 45555555555665543
No 58
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=91.30 E-value=0.25 Score=39.28 Aligned_cols=66 Identities=17% Similarity=-0.019 Sum_probs=46.8
Q ss_pred CCcceeeeecccCCCCeeEEeCcCcchhhhhcc-Ccee-CCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh
Q psy9705 2 NLVAKEFVACQINEPPGVLIVSPFAGAGEQMHE-ALIC-NPYEIDAAAEVIHRALTMPEDERTLRMNYLRKRE 72 (140)
Q Consensus 2 NLva~Eyv~~q~~~~~g~LiLSEfaG~a~~L~~-ai~V-NP~d~~~~A~ai~~AL~m~~~er~~r~~~l~~~V 72 (140)
.++..|+.+| .-|+|.|...|..+.+.+ ...+ =+-+++++|++|.+.+.-+..++..+.....+.-
T Consensus 280 ~~~~lEAma~-----G~PvI~s~~~~~~~~i~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~~~~~~~~~~~ 347 (358)
T cd03812 280 PLVLIEAQAS-----GLPCILSDTITKEVDLTDLVKFLSLDESPEIWAEEILKLKSEDRRERSSESIKKKGLD 347 (358)
T ss_pred CHHHHHHHHh-----CCCEEEEcCCchhhhhccCccEEeCCCCHHHHHHHHHHHHhCcchhhhhhhhhhccch
Confidence 3456676655 347899999998888863 3333 3345799999999999999877766655554443
No 59
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=90.99 E-value=0.43 Score=40.83 Aligned_cols=39 Identities=23% Similarity=0.360 Sum_probs=33.4
Q ss_pred eeEEeCcCcchhhhhc---------cCceeCCCCHHHHHHHHHHHhCC
Q psy9705 18 GVLIVSPFAGAGEQMH---------EALICNPYEIDAAAEVIHRALTM 56 (140)
Q Consensus 18 g~LiLSEfaG~a~~L~---------~ai~VNP~d~~~~A~ai~~AL~m 56 (140)
-++|.|...|..+.+. ..+.+.|.|.++++++|.+++.+
T Consensus 390 ~pvI~s~~gg~~e~v~~~~~~~~~~~G~l~~~~d~~~la~~i~~~l~~ 437 (473)
T TIGR02095 390 TVPIVRRTGGLADTVVDGDPEAESGTGFLFEEYDPGALLAALSRALRL 437 (473)
T ss_pred CCeEEccCCCccceEecCCCCCCCCceEEeCCCCHHHHHHHHHHHHHH
Confidence 3788999989888773 25899999999999999999885
No 60
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=90.91 E-value=0.35 Score=41.07 Aligned_cols=67 Identities=18% Similarity=0.198 Sum_probs=42.4
Q ss_pred CcceeeeecccCCCCeeEEeCcCcchhh-hhc----c--CceeCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcC
Q psy9705 3 LVAKEFVACQINEPPGVLIVSPFAGAGE-QMH----E--ALICNPYEIDAAAEVIHRALTMPEDERTLRMNYLRKREKVH 75 (140)
Q Consensus 3 Lva~Eyv~~q~~~~~g~LiLSEfaG~a~-~L~----~--ai~VNP~d~~~~A~ai~~AL~m~~~er~~r~~~l~~~V~~~ 75 (140)
++..|+++|. -++|.|.-.|... ... + .++++ |.+++|++|.+.++++++++....+.-.+...++
T Consensus 339 i~~lEAMa~G-----~pvIa~~~ggp~~~iv~~~~~g~~G~l~~--d~~~la~ai~~ll~~~~~~~~~~~~~~~~~~~~f 411 (419)
T cd03806 339 IGVVEYMAAG-----LIPLAHASGGPLLDIVVPWDGGPTGFLAS--TAEEYAEAIEKILSLSEEERLRIRRAARSSVKRF 411 (419)
T ss_pred cHHHHHHHcC-----CcEEEEcCCCCchheeeccCCCCceEEeC--CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhh
Confidence 4567777762 2466666556443 332 2 34553 9999999999999999877766544434444444
Q ss_pred C
Q psy9705 76 D 76 (140)
Q Consensus 76 ~ 76 (140)
+
T Consensus 412 s 412 (419)
T cd03806 412 S 412 (419)
T ss_pred C
Confidence 4
No 61
>PHA01633 putative glycosyl transferase group 1
Probab=90.68 E-value=0.38 Score=40.41 Aligned_cols=47 Identities=19% Similarity=0.250 Sum_probs=33.2
Q ss_pred ceeCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCChhHHHHHH
Q psy9705 36 LICNPYEIDAAAEVIHRALTMPEDERTLRMNYLRKREKVHDVNYWMRSF 84 (140)
Q Consensus 36 i~VNP~d~~~~A~ai~~AL~m~~~er~~r~~~l~~~V~~~~~~~W~~~~ 84 (140)
+.+.++|.+++|++|..|+.++.. .+|...+.+.....+...-.+++
T Consensus 287 ~~~~~~d~~~la~ai~~~~~~~~~--~~~~~~~~~~a~~f~~~~~~~~~ 333 (335)
T PHA01633 287 WKIHKFQIEDMANAIILAFELQDR--EERSMKLKELAKKYDIRNLYTRF 333 (335)
T ss_pred eeecCCCHHHHHHHHHHHHhccCh--hhhhHHHHHHHHhcCHHHHHHHh
Confidence 367799999999999999988743 33344555667777666555444
No 62
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=90.41 E-value=0.15 Score=41.46 Aligned_cols=15 Identities=47% Similarity=0.461 Sum_probs=12.7
Q ss_pred ceEEEEeccccccCC
Q psy9705 126 AWALLLDYDGELWLP 140 (140)
Q Consensus 126 ~rl~~lDydGTL~~~ 140 (140)
.+++|||+||||++.
T Consensus 40 ~k~VIFDlDGTLvDS 54 (286)
T PLN02779 40 PEALLFDCDGVLVET 54 (286)
T ss_pred CcEEEEeCceeEEcc
Confidence 459999999999863
No 63
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=90.39 E-value=0.58 Score=36.95 Aligned_cols=63 Identities=27% Similarity=0.237 Sum_probs=44.1
Q ss_pred ceeeeecccCCCCeeEEeCcCcchhhhhc---cCceeCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhh
Q psy9705 5 AKEFVACQINEPPGVLIVSPFAGAGEQMH---EALICNPYEIDAAAEVIHRALTMPEDERTLRMNYLRKREK 73 (140)
Q Consensus 5 a~Eyv~~q~~~~~g~LiLSEfaG~a~~L~---~ai~VNP~d~~~~A~ai~~AL~m~~~er~~r~~~l~~~V~ 73 (140)
..|+++| .-++|.|...|..+.+. ..+.++|-|.++++++|.+.++.+. ++.+..+..++.+.
T Consensus 278 ~~Ea~a~-----G~Pvi~~~~~~~~~~i~~~~~g~~~~~~~~~~l~~~i~~~~~~~~-~~~~~~~~a~~~~~ 343 (355)
T cd03799 278 LMEAMAM-----GLPVISTDVSGIPELVEDGETGLLVPPGDPEALADAIERLLDDPE-LRREMGEAGRARVE 343 (355)
T ss_pred HHHHHHc-----CCCEEecCCCCcchhhhCCCceEEeCCCCHHHHHHHHHHHHhCHH-HHHHHHHHHHHHHH
Confidence 3555555 23677788877777664 3788999999999999999998654 45544455555553
No 64
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=90.14 E-value=0.45 Score=38.99 Aligned_cols=50 Identities=14% Similarity=0.145 Sum_probs=37.9
Q ss_pred cceeeeecccCCCCeeEEeCc-Ccchhhhhcc---CceeCCCCHHHHHHHHHHHhCCCH
Q psy9705 4 VAKEFVACQINEPPGVLIVSP-FAGAGEQMHE---ALICNPYEIDAAAEVIHRALTMPE 58 (140)
Q Consensus 4 va~Eyv~~q~~~~~g~LiLSE-faG~a~~L~~---ai~VNP~d~~~~A~ai~~AL~m~~ 58 (140)
+..|+.+| .-|+|.|. ..|..+.+.+ .+.|+|.|++++|++|.+-++-+.
T Consensus 273 ~~lEAma~-----G~Pvv~s~~~~g~~eiv~~~~~G~lv~~~d~~~la~~i~~l~~~~~ 326 (359)
T PRK09922 273 TLLEAMSY-----GIPCISSDCMSGPRDIIKPGLNGELYTPGNIDEFVGKLNKVISGEV 326 (359)
T ss_pred HHHHHHHc-----CCCEEEeCCCCChHHHccCCCceEEECCCCHHHHHHHHHHHHhCcc
Confidence 34455555 23678898 8888877742 578999999999999999877664
No 65
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=90.01 E-value=0.63 Score=39.30 Aligned_cols=63 Identities=11% Similarity=0.123 Sum_probs=44.2
Q ss_pred ceeeeecccCCCCeeEEeCcCcchhhhhc---cCceeCCCCHHHHHHHHHHHhCCC--HHHHHHHHHHHHHHhhc
Q psy9705 5 AKEFVACQINEPPGVLIVSPFAGAGEQMH---EALICNPYEIDAAAEVIHRALTMP--EDERTLRMNYLRKREKV 74 (140)
Q Consensus 5 a~Eyv~~q~~~~~g~LiLSEfaG~a~~L~---~ai~VNP~d~~~~A~ai~~AL~m~--~~er~~r~~~l~~~V~~ 74 (140)
..|+.+| .-|+|.|...|..+.+. ..+.++ |.+++|++|...++.+ ++++.+--+..+++...
T Consensus 334 ~~Eama~-----G~PVI~s~~~~~~eiv~~~~~G~lv~--d~~~la~~i~~ll~~~~~~~~~~~m~~~~~~~~~~ 401 (415)
T cd03816 334 VVDMFGC-----GLPVCALDFKCIDELVKHGENGLVFG--DSEELAEQLIDLLSNFPNRGKLNSLKKGAQEESEL 401 (415)
T ss_pred HHHHHHc-----CCCEEEeCCCCHHHHhcCCCCEEEEC--CHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhhc
Confidence 3566555 23678888888888874 246664 9999999999999973 66666555555555544
No 66
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=89.76 E-value=0.83 Score=35.90 Aligned_cols=49 Identities=20% Similarity=0.307 Sum_probs=37.2
Q ss_pred CcceeeeecccCCCCeeEEeCcCcchhhhhcc---CceeCCCCHHHHHHHHHHHhCCCH
Q psy9705 3 LVAKEFVACQINEPPGVLIVSPFAGAGEQMHE---ALICNPYEIDAAAEVIHRALTMPE 58 (140)
Q Consensus 3 Lva~Eyv~~q~~~~~g~LiLSEfaG~a~~L~~---ai~VNP~d~~~~A~ai~~AL~m~~ 58 (140)
++..|+++| .-|+|.|...|..+.+.+ .+.++| .++++++|...+..+.
T Consensus 259 ~~~lEAma~-----G~PvI~~~~~~~~e~i~~~~~g~l~~~--~~~l~~~l~~l~~~~~ 310 (335)
T cd03802 259 LVMIEAMAC-----GTPVIAFRRGAVPEVVEDGVTGFLVDS--VEELAAAVARADRLDR 310 (335)
T ss_pred hHHHHHHhc-----CCCEEEeCCCCchhheeCCCcEEEeCC--HHHHHHHHHHHhccHH
Confidence 345666666 248999999888888753 577777 9999999999877654
No 67
>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672. Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.
Probab=89.39 E-value=0.33 Score=38.85 Aligned_cols=33 Identities=15% Similarity=0.234 Sum_probs=23.3
Q ss_pred ccccccHHHHHHHHHccCCCceEEEEeccccccCC
Q psy9705 106 PVTLEDFDEYLSKYIGTHEQAWALLLDYDGELWLP 140 (140)
Q Consensus 106 p~~~~~~~~~~~~Y~~s~~R~rl~~lDydGTL~~~ 140 (140)
|+..-+++++.+.-...+.- .++||.||||+.+
T Consensus 45 ~~~~~~~~~~~~~~~~~~p~--aViFDlDgTLlDS 77 (237)
T TIGR01672 45 PIHWISVAQIENSLEGRPPI--AVSFDIDDTVLFS 77 (237)
T ss_pred CeeEEEHHHHHHhcCCCCCe--EEEEeCCCccccC
Confidence 34333667887777554444 8999999999863
No 68
>PRK13225 phosphoglycolate phosphatase; Provisional
Probab=87.46 E-value=0.32 Score=39.37 Aligned_cols=13 Identities=38% Similarity=0.739 Sum_probs=11.7
Q ss_pred EEEEeccccccCC
Q psy9705 128 ALLLDYDGELWLP 140 (140)
Q Consensus 128 l~~lDydGTL~~~ 140 (140)
.++||+||||+.+
T Consensus 64 ~vIFDlDGTLiDS 76 (273)
T PRK13225 64 AIIFDFDGTLVDS 76 (273)
T ss_pred EEEECCcCccccC
Confidence 8999999999863
No 69
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=85.06 E-value=1.1 Score=38.09 Aligned_cols=40 Identities=25% Similarity=0.379 Sum_probs=33.2
Q ss_pred eeEEeCcCcchhhhhc---------cCceeCCCCHHHHHHHHHHHhCCC
Q psy9705 18 GVLIVSPFAGAGEQMH---------EALICNPYEIDAAAEVIHRALTMP 57 (140)
Q Consensus 18 g~LiLSEfaG~a~~L~---------~ai~VNP~d~~~~A~ai~~AL~m~ 57 (140)
-++|.|...|..+.+. ..+.+.|.|.++++++|.+++...
T Consensus 395 ~pvI~~~~gg~~e~v~~~~~~~~~~~G~~~~~~~~~~l~~~i~~~l~~~ 443 (476)
T cd03791 395 TVPIVRATGGLADTVIDYNEDTGEGTGFVFEGYNADALLAALRRALALY 443 (476)
T ss_pred CCCEECcCCCccceEeCCcCCCCCCCeEEeCCCCHHHHHHHHHHHHHHH
Confidence 3678888888888774 368999999999999999998754
No 70
>PRK11133 serB phosphoserine phosphatase; Provisional
Probab=84.65 E-value=0.59 Score=38.97 Aligned_cols=15 Identities=20% Similarity=0.235 Sum_probs=12.9
Q ss_pred CCCceEEEEeccccccC
Q psy9705 123 HEQAWALLLDYDGELWL 139 (140)
Q Consensus 123 ~~R~rl~~lDydGTL~~ 139 (140)
+.| +++||.||||+.
T Consensus 109 ~~~--LvvfDmDGTLI~ 123 (322)
T PRK11133 109 TPG--LLVMDMDSTAIQ 123 (322)
T ss_pred CCC--EEEEECCCCCcc
Confidence 456 999999999984
No 71
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=84.45 E-value=4.2 Score=33.67 Aligned_cols=78 Identities=18% Similarity=0.085 Sum_probs=48.2
Q ss_pred cceeeeecccCCCCeeEEeCcCcchhhh-hcc-CceeCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh-hcCChhHH
Q psy9705 4 VAKEFVACQINEPPGVLIVSPFAGAGEQ-MHE-ALICNPYEIDAAAEVIHRALTMPEDERTLRMNYLRKRE-KVHDVNYW 80 (140)
Q Consensus 4 va~Eyv~~q~~~~~g~LiLSEfaG~a~~-L~~-ai~VNP~d~~~~A~ai~~AL~m~~~er~~r~~~l~~~V-~~~~~~~W 80 (140)
+..|+++| .-++|.|...+..-. ..+ .+.| |-|.+++|++|.+.++ .++.+.+..+..++++ ..++-...
T Consensus 314 ~~lEAma~-----G~PVV~t~~~~~~i~~~~~~g~lv-~~~~~~la~ai~~ll~-~~~~~~~~~~~ar~~v~~~fsw~~~ 386 (397)
T TIGR03087 314 KVLEAMAM-----AKPVVASPEAAEGIDALPGAELLV-AADPADFAAAILALLA-NPAEREELGQAARRRVLQHYHWPRN 386 (397)
T ss_pred HHHHHHHc-----CCCEEecCcccccccccCCcceEe-CCCHHHHHHHHHHHHc-CHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 34566555 235667765321111 122 5666 4899999999999887 4556666666667776 46677777
Q ss_pred HHHHHHHH
Q psy9705 81 MRSFLKGM 88 (140)
Q Consensus 81 ~~~~l~~l 88 (140)
++++.+-+
T Consensus 387 ~~~~~~~l 394 (397)
T TIGR03087 387 LARLDALL 394 (397)
T ss_pred HHHHHHHh
Confidence 77665443
No 72
>PRK00654 glgA glycogen synthase; Provisional
Probab=84.12 E-value=1.8 Score=37.14 Aligned_cols=39 Identities=15% Similarity=0.344 Sum_probs=32.6
Q ss_pred eeEEeCcCcchhhhhc---------cCceeCCCCHHHHHHHHHHHhCC
Q psy9705 18 GVLIVSPFAGAGEQMH---------EALICNPYEIDAAAEVIHRALTM 56 (140)
Q Consensus 18 g~LiLSEfaG~a~~L~---------~ai~VNP~d~~~~A~ai~~AL~m 56 (140)
.+.|+|...|..+.+. ..+.|+|.|.++++++|..++..
T Consensus 381 ~p~V~~~~gG~~e~v~~~~~~~~~~~G~lv~~~d~~~la~~i~~~l~~ 428 (466)
T PRK00654 381 TLPIVRRTGGLADTVIDYNPEDGEATGFVFDDFNAEDLLRALRRALEL 428 (466)
T ss_pred CCEEEeCCCCccceeecCCCCCCCCceEEeCCCCHHHHHHHHHHHHHH
Confidence 3678898888887763 26899999999999999999874
No 73
>PLN02575 haloacid dehalogenase-like hydrolase
Probab=83.85 E-value=0.53 Score=40.36 Aligned_cols=13 Identities=8% Similarity=0.406 Sum_probs=11.8
Q ss_pred eEEEEeccccccC
Q psy9705 127 WALLLDYDGELWL 139 (140)
Q Consensus 127 rl~~lDydGTL~~ 139 (140)
+.++||+||||++
T Consensus 132 ~~VIFDlDGTLID 144 (381)
T PLN02575 132 LGAIFEWEGVIIE 144 (381)
T ss_pred CEEEEcCcCccee
Confidence 5999999999985
No 74
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=82.86 E-value=3.1 Score=32.97 Aligned_cols=73 Identities=14% Similarity=0.042 Sum_probs=45.7
Q ss_pred cceeeeecccCCCCeeEEeCcCcchhhhhcc-CceeCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhc-CChhHHH
Q psy9705 4 VAKEFVACQINEPPGVLIVSPFAGAGEQMHE-ALICNPYEIDAAAEVIHRALTMPEDERTLRMNYLRKREKV-HDVNYWM 81 (140)
Q Consensus 4 va~Eyv~~q~~~~~g~LiLSEfaG~a~~L~~-ai~VNP~d~~~~A~ai~~AL~m~~~er~~r~~~l~~~V~~-~~~~~W~ 81 (140)
+..|+++| .-|+|.|...|..+.+.+ ...+.|-|. +|++|.+.+..+ +++.+..+..++.+.. ++...=+
T Consensus 284 ~~~EAma~-----G~PvI~s~~~~~~e~~~~~g~~~~~~~~--l~~~i~~l~~~~-~~~~~~~~~~~~~~~~~fs~~~~~ 355 (363)
T cd04955 284 SLLEAMAY-----GCPVLASDNPFNREVLGDKAIYFKVGDD--LASLLEELEADP-EEVSAMAKAARERIREKYTWEKIA 355 (363)
T ss_pred HHHHHHHc-----CCCEEEecCCccceeecCCeeEecCchH--HHHHHHHHHhCH-HHHHHHHHHHHHHHHHhCCHHHHH
Confidence 44566655 247888888877777753 667777665 999999999876 3444444444555543 4544433
Q ss_pred HHH
Q psy9705 82 RSF 84 (140)
Q Consensus 82 ~~~ 84 (140)
+++
T Consensus 356 ~~~ 358 (363)
T cd04955 356 DQY 358 (363)
T ss_pred HHH
Confidence 333
No 75
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=81.23 E-value=0.6 Score=40.28 Aligned_cols=13 Identities=46% Similarity=0.774 Sum_probs=11.6
Q ss_pred eEEEEeccccccC
Q psy9705 127 WALLLDYDGELWL 139 (140)
Q Consensus 127 rl~~lDydGTL~~ 139 (140)
+.++||+||||+.
T Consensus 242 k~vIFDlDGTLiD 254 (459)
T PRK06698 242 QALIFDMDGTLFQ 254 (459)
T ss_pred hheeEccCCceec
Confidence 3899999999986
No 76
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=81.22 E-value=6.1 Score=32.82 Aligned_cols=75 Identities=11% Similarity=-0.019 Sum_probs=45.0
Q ss_pred cceeeeecccCCCCeeEEeCcC-----cchhhhh--ccCceeCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCC
Q psy9705 4 VAKEFVACQINEPPGVLIVSPF-----AGAGEQM--HEALICNPYEIDAAAEVIHRALTMPEDERTLRMNYLRKREKVHD 76 (140)
Q Consensus 4 va~Eyv~~q~~~~~g~LiLSEf-----aG~a~~L--~~ai~VNP~d~~~~A~ai~~AL~m~~~er~~r~~~l~~~V~~~~ 76 (140)
+..|.++| .-|+|++.+ .|-+..+ .|+ .+-+-|.++++++|...|...++++++..+...++...+.
T Consensus 294 ti~EAma~-----g~PvI~~~~~pgqe~gn~~~i~~~g~-g~~~~~~~~la~~i~~ll~~~~~~~~~m~~~~~~~~~~~a 367 (382)
T PLN02605 294 TIAEALIR-----GLPIILNGYIPGQEEGNVPYVVDNGF-GAFSESPKEIARIVAEWFGDKSDELEAMSENALKLARPEA 367 (382)
T ss_pred hHHHHHHc-----CCCEEEecCCCccchhhHHHHHhCCc-eeecCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCch
Confidence 34555555 235677665 3444444 232 2346899999999999999756565555555566666555
Q ss_pred hhHHHHHH
Q psy9705 77 VNYWMRSF 84 (140)
Q Consensus 77 ~~~W~~~~ 84 (140)
+..=++.+
T Consensus 368 ~~~i~~~l 375 (382)
T PLN02605 368 VFDIVHDL 375 (382)
T ss_pred HHHHHHHH
Confidence 54444333
No 77
>PLN02887 hydrolase family protein
Probab=78.24 E-value=1.5 Score=39.54 Aligned_cols=22 Identities=27% Similarity=0.255 Sum_probs=17.2
Q ss_pred HHHHHHccCCCceEEEEeccccccC
Q psy9705 115 YLSKYIGTHEQAWALLLDYDGELWL 139 (140)
Q Consensus 115 ~~~~Y~~s~~R~rl~~lDydGTL~~ 139 (140)
.++.|+. +-+ +|++|.||||..
T Consensus 300 ~~~~~~~-~iK--LIa~DLDGTLLn 321 (580)
T PLN02887 300 SLRFYKP-KFS--YIFCDMDGTLLN 321 (580)
T ss_pred chhhhcc-Ccc--EEEEeCCCCCCC
Confidence 4567755 556 999999999974
No 78
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=77.40 E-value=1.4 Score=36.69 Aligned_cols=12 Identities=25% Similarity=0.454 Sum_probs=11.1
Q ss_pred EEEEeccccccC
Q psy9705 128 ALLLDYDGELWL 139 (140)
Q Consensus 128 l~~lDydGTL~~ 139 (140)
+|+||+||||..
T Consensus 128 vIvFDLDgTLi~ 139 (301)
T TIGR01684 128 VVVFDLDSTLIT 139 (301)
T ss_pred EEEEecCCCCcC
Confidence 999999999974
No 79
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=76.19 E-value=8.7 Score=31.37 Aligned_cols=50 Identities=16% Similarity=0.253 Sum_probs=33.8
Q ss_pred eeEEeCcCcchhhhhc-c--CceeCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh
Q psy9705 18 GVLIVSPFAGAGEQMH-E--ALICNPYEIDAAAEVIHRALTMPEDERTLRMNYLRKRE 72 (140)
Q Consensus 18 g~LiLSEfaG~a~~L~-~--ai~VNP~d~~~~A~ai~~AL~m~~~er~~r~~~l~~~V 72 (140)
=|+|.+..+|.++... + -+.|+ +.++++++|.. ++++++.+-.+...+..
T Consensus 261 ~PVI~~~~~~~~~~V~~~~~G~~v~--~~~el~~~l~~---~~~~~~~~m~~n~~~~~ 313 (333)
T PRK09814 261 LPVIVWSKAAIADFIVENGLGFVVD--SLEELPEIIDN---ITEEEYQEMVENVKKIS 313 (333)
T ss_pred CCEEECCCccHHHHHHhCCceEEeC--CHHHHHHHHHh---cCHHHHHHHHHHHHHHH
Confidence 4788899999888884 2 56777 67888888886 55666544444444433
No 80
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=75.49 E-value=6.8 Score=32.80 Aligned_cols=66 Identities=17% Similarity=0.016 Sum_probs=42.1
Q ss_pred cceeeeecccCCCCeeEEeCcC----cchhhhh-ccCceeCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcC
Q psy9705 4 VAKEFVACQINEPPGVLIVSPF----AGAGEQM-HEALICNPYEIDAAAEVIHRALTMPEDERTLRMNYLRKREKVH 75 (140)
Q Consensus 4 va~Eyv~~q~~~~~g~LiLSEf----aG~a~~L-~~ai~VNP~d~~~~A~ai~~AL~m~~~er~~r~~~l~~~V~~~ 75 (140)
++.|..+| .-++|.+.. .+..+.+ .+-..+.|-|.+++|++|...++ .++.+.+-.+..++++..+
T Consensus 336 ~~lEAma~-----G~PVI~g~~~~~~~e~~~~~~~~g~~~~~~d~~~La~~l~~ll~-~~~~~~~m~~~a~~~~~~~ 406 (425)
T PRK05749 336 NPLEPAAF-----GVPVISGPHTFNFKEIFERLLQAGAAIQVEDAEDLAKAVTYLLT-DPDARQAYGEAGVAFLKQN 406 (425)
T ss_pred CHHHHHHh-----CCCEEECCCccCHHHHHHHHHHCCCeEEECCHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHhC
Confidence 34565555 235666544 3334444 23355669999999999999887 5666666666667777654
No 81
>PRK14099 glycogen synthase; Provisional
Probab=74.63 E-value=5.3 Score=34.83 Aligned_cols=37 Identities=19% Similarity=0.336 Sum_probs=29.2
Q ss_pred eEEeCcCcchhhhhc------------cCceeCCCCHHHHHHHHHHHhC
Q psy9705 19 VLIVSPFAGAGEQMH------------EALICNPYEIDAAAEVIHRALT 55 (140)
Q Consensus 19 ~LiLSEfaG~a~~L~------------~ai~VNP~d~~~~A~ai~~AL~ 55 (140)
+.|+|...|..+... ..++++|.|.++++++|.+|+.
T Consensus 395 ppVvs~~GGl~d~V~~~~~~~~~~~~~~G~l~~~~d~~~La~ai~~a~~ 443 (485)
T PRK14099 395 VPVVARVGGLADTVVDANEMAIATGVATGVQFSPVTADALAAALRKTAA 443 (485)
T ss_pred CcEEeCCCCccceeecccccccccCCCceEEeCCCCHHHHHHHHHHHHH
Confidence 667788777766552 2689999999999999998754
No 82
>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional
Probab=74.42 E-value=1.8 Score=39.96 Aligned_cols=13 Identities=31% Similarity=0.320 Sum_probs=11.7
Q ss_pred eEEEEeccccccC
Q psy9705 127 WALLLDYDGELWL 139 (140)
Q Consensus 127 rl~~lDydGTL~~ 139 (140)
++|++|+||||..
T Consensus 417 KLIfsDLDGTLLd 429 (694)
T PRK14502 417 KIVYTDLDGTLLN 429 (694)
T ss_pred eEEEEECcCCCcC
Confidence 4999999999985
No 83
>PHA03398 viral phosphatase superfamily protein; Provisional
Probab=74.38 E-value=1.9 Score=36.08 Aligned_cols=15 Identities=20% Similarity=0.352 Sum_probs=12.6
Q ss_pred CCCceEEEEeccccccC
Q psy9705 123 HEQAWALLLDYDGELWL 139 (140)
Q Consensus 123 ~~R~rl~~lDydGTL~~ 139 (140)
..+ +++||+||||..
T Consensus 127 ~~~--~i~~D~D~TL~~ 141 (303)
T PHA03398 127 IPH--VIVFDLDSTLIT 141 (303)
T ss_pred ecc--EEEEecCCCccC
Confidence 346 999999999975
No 84
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=72.61 E-value=13 Score=32.73 Aligned_cols=66 Identities=12% Similarity=0.035 Sum_probs=41.6
Q ss_pred eeEEeCcCc-chhhhhc-c--CceeC----CCC----HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCChhHHHHHHH
Q psy9705 18 GVLIVSPFA-GAGEQMH-E--ALICN----PYE----IDAAAEVIHRALTMPEDERTLRMNYLRKREKVHDVNYWMRSFL 85 (140)
Q Consensus 18 g~LiLSEfa-G~a~~L~-~--ai~VN----P~d----~~~~A~ai~~AL~m~~~er~~r~~~l~~~V~~~~~~~W~~~~l 85 (140)
-|+|.|... |..+.+. | .++|. |.| ++++|++|...|. ++++.+-.+..++....++...=++...
T Consensus 417 ~PVI~~dv~~G~~eiI~~g~nG~lv~~~~~~~d~~~~~~~la~~I~~ll~--~~~~~~~~~~a~~~a~~fs~~~v~~~w~ 494 (500)
T TIGR02918 417 LGMIGFDVNYGNPTFIEDNKNGYLIPIDEEEDDEDQIITALAEKIVEYFN--SNDIDAFHEYSYQIAEGFLTANIIEKWK 494 (500)
T ss_pred CCEEEecCCCCCHHHccCCCCEEEEeCCccccchhHHHHHHHHHHHHHhC--hHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 467777865 6666663 2 46664 345 8889999999883 4455555566666666655544443333
No 85
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=71.19 E-value=2.6 Score=32.22 Aligned_cols=15 Identities=40% Similarity=0.452 Sum_probs=13.2
Q ss_pred ceEEEEeccccccCC
Q psy9705 126 AWALLLDYDGELWLP 140 (140)
Q Consensus 126 ~rl~~lDydGTL~~~ 140 (140)
.|.++||.|.||++|
T Consensus 41 ik~li~DkDNTL~~~ 55 (168)
T PF09419_consen 41 IKALIFDKDNTLTPP 55 (168)
T ss_pred ceEEEEcCCCCCCCC
Confidence 359999999999976
No 86
>PRK10125 putative glycosyl transferase; Provisional
Probab=70.80 E-value=11 Score=31.99 Aligned_cols=44 Identities=16% Similarity=0.089 Sum_probs=33.9
Q ss_pred CcceeeeecccCCCCeeEEeCcCcchhhhhc--cCceeCCCCHHHHHHHHH
Q psy9705 3 LVAKEFVACQINEPPGVLIVSPFAGAGEQMH--EALICNPYEIDAAAEVIH 51 (140)
Q Consensus 3 Lva~Eyv~~q~~~~~g~LiLSEfaG~a~~L~--~ai~VNP~d~~~~A~ai~ 51 (140)
++..|.++| .-|+|.|...|..+... ..++|.|-|++++|++++
T Consensus 321 ~vilEAmA~-----G~PVVat~~gG~~Eiv~~~~G~lv~~~d~~~La~~~~ 366 (405)
T PRK10125 321 LILCEALSI-----GVPVIATHSDAAREVLQKSGGKTVSEEEVLQLAQLSK 366 (405)
T ss_pred CHHHHHHHc-----CCCEEEeCCCChHHhEeCCcEEEECCCCHHHHHhccC
Confidence 455566665 35899999999888774 378999999999998653
No 87
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=70.67 E-value=11 Score=34.25 Aligned_cols=54 Identities=11% Similarity=0.138 Sum_probs=35.9
Q ss_pred CcceeeeecccCCCCeeEEeCcCcchh----hhhc----cCceeC-------CCCHHHHHHHHHHHhCCCHHHH
Q psy9705 3 LVAKEFVACQINEPPGVLIVSPFAGAG----EQMH----EALICN-------PYEIDAAAEVIHRALTMPEDER 61 (140)
Q Consensus 3 Lva~Eyv~~q~~~~~g~LiLSEfaG~a----~~L~----~ai~VN-------P~d~~~~A~ai~~AL~m~~~er 61 (140)
+++.|-++| .-|+|.|..+|.. +..+ .++.|. |-++++++++|.+-+.++..++
T Consensus 489 ~~~lEAma~-----G~PvI~t~~~gf~~~v~E~v~~~~~~gi~V~~r~~~~~~e~v~~La~~m~~~~~~~~r~~ 557 (590)
T cd03793 489 YTPAECTVM-----GIPSITTNLSGFGCFMEEHIEDPESYGIYIVDRRFKSPDESVQQLTQYMYEFCQLSRRQR 557 (590)
T ss_pred cHHHHHHHc-----CCCEEEccCcchhhhhHHHhccCCCceEEEecCCccchHHHHHHHHHHHHHHhCCcHHHH
Confidence 355565555 3589999999883 3433 368887 4567778888888777654443
No 88
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=70.50 E-value=10 Score=28.92 Aligned_cols=50 Identities=18% Similarity=0.119 Sum_probs=34.7
Q ss_pred cceeeeecccCCCCeeEEeCcCcchhhhhc---cCceeCCCCHHHHHHHHHHHhCCCH
Q psy9705 4 VAKEFVACQINEPPGVLIVSPFAGAGEQMH---EALICNPYEIDAAAEVIHRALTMPE 58 (140)
Q Consensus 4 va~Eyv~~q~~~~~g~LiLSEfaG~a~~L~---~ai~VNP~d~~~~A~ai~~AL~m~~ 58 (140)
+..|+++| .-|+|.|...|..+.+. ..+.+.|.|.+++++.+.....+..
T Consensus 279 ~~~Ea~~~-----G~PvI~~~~~~~~e~i~~~~~g~~~~~~~~~~~~~~~~~i~~~~~ 331 (353)
T cd03811 279 VLLEAMAL-----GTPVVATDCPGPREILEDGENGLLVPVGDEAALAAAALALLDLLL 331 (353)
T ss_pred HHHHHHHh-----CCCEEEcCCCChHHHhcCCCceEEECCCCHHHHHHHHHHHHhccC
Confidence 34555544 23688899999888874 3788999999999655555555443
No 89
>PRK14098 glycogen synthase; Provisional
Probab=69.62 E-value=7.1 Score=34.11 Aligned_cols=38 Identities=18% Similarity=0.283 Sum_probs=29.7
Q ss_pred eEEeCcCcchhhhhc-------cCceeCCCCHHHHHHHHHHHhCC
Q psy9705 19 VLIVSPFAGAGEQMH-------EALICNPYEIDAAAEVIHRALTM 56 (140)
Q Consensus 19 ~LiLSEfaG~a~~L~-------~ai~VNP~d~~~~A~ai~~AL~m 56 (140)
+.|.+...|..+.+. ..+.+.|.|.++++++|.+++.+
T Consensus 407 ppVv~~~GGl~d~v~~~~~~~~~G~l~~~~d~~~la~ai~~~l~~ 451 (489)
T PRK14098 407 IPVAYAGGGIVETIEEVSEDKGSGFIFHDYTPEALVAKLGEALAL 451 (489)
T ss_pred CeEEecCCCCceeeecCCCCCCceeEeCCCCHHHHHHHHHHHHHH
Confidence 567777667666552 25889999999999999998864
No 90
>PLN02939 transferase, transferring glycosyl groups
Probab=69.10 E-value=13 Score=35.67 Aligned_cols=66 Identities=9% Similarity=0.040 Sum_probs=42.6
Q ss_pred eEEeCcCcchhhhhc------------cCceeCCCCHHHHHHHHHHHhCC---CHHHHHHHHHHHHHHhhcCChhHHHHH
Q psy9705 19 VLIVSPFAGAGEQMH------------EALICNPYEIDAAAEVIHRALTM---PEDERTLRMNYLRKREKVHDVNYWMRS 83 (140)
Q Consensus 19 ~LiLSEfaG~a~~L~------------~ai~VNP~d~~~~A~ai~~AL~m---~~~er~~r~~~l~~~V~~~~~~~W~~~ 83 (140)
+.|.+...|...... .-+.+.|.|.++++++|..|+.. .++.+.+..++. +...++....++.
T Consensus 882 PPVVs~vGGL~DtV~d~d~e~i~~eg~NGfLf~~~D~eaLa~AL~rAL~~~~~dpe~~~~L~~~a--m~~dFSWe~~A~q 959 (977)
T PLN02939 882 VPIVRKTGGLNDSVFDFDDETIPVELRNGFTFLTPDEQGLNSALERAFNYYKRKPEVWKQLVQKD--MNIDFSWDSSASQ 959 (977)
T ss_pred CEEEecCCCCcceeecCCccccccCCCceEEecCCCHHHHHHHHHHHHHHhccCHHHHHHHHHHH--HHhcCCHHHHHHH
Confidence 677787777765441 25788999999999999999873 454443332221 2344555555655
Q ss_pred HHH
Q psy9705 84 FLK 86 (140)
Q Consensus 84 ~l~ 86 (140)
+..
T Consensus 960 Yee 962 (977)
T PLN02939 960 YEE 962 (977)
T ss_pred HHH
Confidence 544
No 91
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=64.54 E-value=56 Score=24.23 Aligned_cols=40 Identities=23% Similarity=0.423 Sum_probs=33.3
Q ss_pred eeEEeCcCcchhhhhcc---CceeCCCCHHHHHHHHHHHhCCC
Q psy9705 18 GVLIVSPFAGAGEQMHE---ALICNPYEIDAAAEVIHRALTMP 57 (140)
Q Consensus 18 g~LiLSEfaG~a~~L~~---ai~VNP~d~~~~A~ai~~AL~m~ 57 (140)
-++|.|...|..+.+.+ .+.++|-|.+++++++...++..
T Consensus 301 ~pvi~~~~~~~~e~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~ 343 (381)
T COG0438 301 TPVIASDVGGIPEVVEDGETGLLVPPGDVEELADALEQLLEDP 343 (381)
T ss_pred CcEEECCCCChHHHhcCCCceEecCCCCHHHHHHHHHHHhcCH
Confidence 36788888888888853 45777779999999999999998
No 92
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=62.59 E-value=3.8 Score=39.42 Aligned_cols=13 Identities=46% Similarity=0.534 Sum_probs=11.6
Q ss_pred eEEEEeccccccC
Q psy9705 127 WALLLDYDGELWL 139 (140)
Q Consensus 127 rl~~lDydGTL~~ 139 (140)
+.++||+||||+.
T Consensus 76 kaVIFDlDGTLiD 88 (1057)
T PLN02919 76 SAVLFDMDGVLCN 88 (1057)
T ss_pred CEEEECCCCCeEe
Confidence 3899999999986
No 93
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=61.95 E-value=30 Score=28.35 Aligned_cols=51 Identities=4% Similarity=-0.143 Sum_probs=36.5
Q ss_pred CCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHh
Q psy9705 40 PYEIDAAAEVIHRALTMPEDERTLRMNYLRKREKVHDVNYWMRSFLKGMGTL 91 (140)
Q Consensus 40 P~d~~~~A~ai~~AL~m~~~er~~r~~~l~~~V~~~~~~~W~~~~l~~l~~~ 91 (140)
+-|.++++++|.+.+.- ++.+.+-.+...++...++....++.+++.+...
T Consensus 322 ~~~~~~l~~~i~~ll~~-~~~~~~m~~~~~~~~~~~s~~~i~~~i~~~~~~~ 372 (380)
T PRK13609 322 IRDDEEVFAKTEALLQD-DMKLLQMKEAMKSLYLPEPADHIVDDILAENHVE 372 (380)
T ss_pred ECCHHHHHHHHHHHHCC-HHHHHHHHHHHHHhCCCchHHHHHHHHHHhhhhh
Confidence 56899999999999884 4455544455566677778888888777666544
No 94
>TIGR00496 frr ribosome recycling factor. This model finds only eubacterial proteins. Mitochondrial and/or chloroplast forms might be expected but are not currently known. This protein was previously called ribosome releasing factor. By releasing ribosomes from mRNA at the end of protein biosynthesis, it prevents inappropriate translation from 3-prime regions of the mRNA and frees the ribosome for new rounds of translation. EGAD|53116|YHR038W is part of the frr superfamily.
Probab=60.60 E-value=4 Score=31.29 Aligned_cols=36 Identities=14% Similarity=0.289 Sum_probs=22.4
Q ss_pred eeEEeCcCcchhhhhccCceeCCCCHHHHHHHHHHHh
Q psy9705 18 GVLIVSPFAGAGEQMHEALICNPYEIDAAAEVIHRAL 54 (140)
Q Consensus 18 g~LiLSEfaG~a~~L~~ai~VNP~d~~~~A~ai~~AL 54 (140)
++.-|++.|..+.-=+..|.|+||| .....+|.+|+
T Consensus 38 ~~~pL~~lA~vsv~~~~~l~I~p~D-~~~~~~I~kAI 73 (176)
T TIGR00496 38 APTPLRQLASVTVPDARTLVIQPFD-KSNINAIEKAI 73 (176)
T ss_pred CcccHHHceeeecCCCCEEEEecCC-hhhHHHHHHHH
Confidence 4556777776543333479999999 44444555554
No 95
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=60.12 E-value=15 Score=33.89 Aligned_cols=65 Identities=18% Similarity=0.196 Sum_probs=39.6
Q ss_pred eeEEeCcCcchhhhhcc---CceeCCCCH--HHHHHHHHHHhCCCHHHHHHHHHHHHHHh-hcCChhHHHHH
Q psy9705 18 GVLIVSPFAGAGEQMHE---ALICNPYEI--DAAAEVIHRALTMPEDERTLRMNYLRKRE-KVHDVNYWMRS 83 (140)
Q Consensus 18 g~LiLSEfaG~a~~L~~---ai~VNP~d~--~~~A~ai~~AL~m~~~er~~r~~~l~~~V-~~~~~~~W~~~ 83 (140)
-++|.|...|..+.+.+ .++|.|-|. ++++++|.+++.........+ +..++++ ..++...-++.
T Consensus 616 ~PVVat~~gG~~EiV~dg~~GlLv~~~d~~~~~La~aL~~ll~~l~~~~~l~-~~ar~~a~~~FS~~~~~~~ 686 (694)
T PRK15179 616 VPVVTTLAGGAGEAVQEGVTGLTLPADTVTAPDVAEALARIHDMCAADPGIA-RKAADWASARFSLNQMIAS 686 (694)
T ss_pred CeEEEECCCChHHHccCCCCEEEeCCCCCChHHHHHHHHHHHhChhccHHHH-HHHHHHHHHhCCHHHHHHH
Confidence 37788888888888742 678887775 688999988887543222222 2334444 34454443333
No 96
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=58.46 E-value=6.2 Score=35.30 Aligned_cols=13 Identities=23% Similarity=0.179 Sum_probs=11.4
Q ss_pred eEEEEeccccccC
Q psy9705 127 WALLLDYDGELWL 139 (140)
Q Consensus 127 rl~~lDydGTL~~ 139 (140)
+++|||.||||+.
T Consensus 169 Kia~fD~DGTLi~ 181 (526)
T TIGR01663 169 KIAGFDLDGTIIK 181 (526)
T ss_pred cEEEEECCCCccc
Confidence 3999999999974
No 97
>PF14338 Mrr_N: Mrr N-terminal domain
Probab=58.09 E-value=19 Score=24.14 Aligned_cols=53 Identities=19% Similarity=0.317 Sum_probs=37.8
Q ss_pred CCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHh
Q psy9705 39 NPYEIDAAAEVIHRALTMPEDERTLRMNYLRKREKVHDVNYWMRSFLKGMGTL 91 (140)
Q Consensus 39 NP~d~~~~A~ai~~AL~m~~~er~~r~~~l~~~V~~~~~~~W~~~~l~~l~~~ 91 (140)
.|....++.+.|.+-+..+++++..+...-..+..-.+-..|+.+.|....-.
T Consensus 18 ~~~~~~ei~~~v~~~~~ls~e~~~~~~~sg~~~~~~~~ri~Wa~~~L~~aGli 70 (92)
T PF14338_consen 18 GSASRKEIYERVAERFGLSDEERNERLPSGQGYSRFKNRIRWARSYLKKAGLI 70 (92)
T ss_pred CCcCHHHHHHHHHHHhCCCHHHHHHHcccCCcchhHHHhHHHHHHHHHHCCCc
Confidence 47889999999999999999999887652222222234468888777554433
No 98
>PF13693 HTH_35: Winged helix-turn-helix DNA-binding; PDB: 1NEQ_A 1NER_A.
Probab=57.23 E-value=6.4 Score=26.47 Aligned_cols=36 Identities=31% Similarity=0.503 Sum_probs=24.5
Q ss_pred eCcCcch-hhhhccCceeCCCCHHHHHHHHHHHhCCCHHH
Q psy9705 22 VSPFAGA-GEQMHEALICNPYEIDAAAEVIHRALTMPEDE 60 (140)
Q Consensus 22 LSEfaG~-a~~L~~ai~VNP~d~~~~A~ai~~AL~m~~~e 60 (140)
||+-.|- .+.|..|+ ..|| .....+|.+||.|+++|
T Consensus 21 lsr~~Gl~~~tl~nal-~r~~--pk~E~~IA~aLgv~P~e 57 (78)
T PF13693_consen 21 LSREAGLSSSTLRNAL-RRPW--PKGERIIADALGVPPEE 57 (78)
T ss_dssp HHHHHSS-HHHHHHTT-TSS---HHHHHHHHHHTTS-HHH
T ss_pred HHHHcCCCHHHHHHHH-cCCC--hHHHHHHHHHHCcCHHH
Confidence 4555663 34466665 5888 66789999999999976
No 99
>cd01421 IMPCH Inosine monophosphate cyclohydrolase domain. This is the N-terminal domain in the purine biosynthesis pathway protein ATIC (purH). The bifunctional ATIC protein contains a C-terminal ATIC formylase domain that formylates 5-aminoimidazole-4-carboxamide-ribonucleotide. The IMPCH domain then converts the formyl-5-aminoimidazole-4-carboxamide-ribonucleotide to inosine monophosphate. This is the final step in de novo purine production.
Probab=54.39 E-value=13 Score=29.04 Aligned_cols=43 Identities=12% Similarity=0.121 Sum_probs=35.7
Q ss_pred CceeCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCh
Q psy9705 35 ALICNPYEIDAAAEVIHRALTMPEDERTLRMNYLRKREKVHDV 77 (140)
Q Consensus 35 ai~VNP~d~~~~A~ai~~AL~m~~~er~~r~~~l~~~V~~~~~ 77 (140)
++.+||-|++++.+.|+.-=..+.+.|++...+.+++...+|+
T Consensus 139 ~vv~dp~dY~~v~~~l~~~g~~~~~~R~~lA~kAF~~ta~YD~ 181 (187)
T cd01421 139 TVLVDPADYQKVLEELKSNGSISEETRRRLALKAFAHTAEYDA 181 (187)
T ss_pred EEEcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 6889999999999999875567788888888888887776664
No 100
>cd00520 RRF Ribosome recycling factor (RRF). Ribosome recycling factor dissociates the posttermination complex, composed of the ribosome, deacylated tRNA, and mRNA, after termination of translation. Thus ribosomes are "recycled" and ready for another round of protein synthesis. RRF is believed to bind the ribosome at the A-site in a manner that mimics tRNA, but the specific mechanisms remain unclear. RRF is essential for bacterial growth. It is not necessary for cell growth in archaea or eukaryotes, but is found in mitochondria or chloroplasts of some eukaryotic species.
Probab=53.12 E-value=6.7 Score=30.06 Aligned_cols=35 Identities=17% Similarity=0.337 Sum_probs=20.3
Q ss_pred eEEeCcCcchhhhhccCceeCCCCHHHHHHHHHHHh
Q psy9705 19 VLIVSPFAGAGEQMHEALICNPYEIDAAAEVIHRAL 54 (140)
Q Consensus 19 ~LiLSEfaG~a~~L~~ai~VNP~d~~~~A~ai~~AL 54 (140)
..-|++.|-.+.-=...|.|+|||. .+..+|.+|+
T Consensus 44 ~~pL~~lA~Vsv~~~~~l~I~p~D~-~~i~~I~kAI 78 (179)
T cd00520 44 PTPLNQLASISVPEPRTIVINPFDK-SAIKAIEKAI 78 (179)
T ss_pred CccHHHceeeecCCCCEEEEeecch-hhHHHHHHHH
Confidence 3445555544322223699999997 5555555554
No 101
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=53.06 E-value=32 Score=31.27 Aligned_cols=71 Identities=15% Similarity=0.125 Sum_probs=44.1
Q ss_pred eeEEeCcCcchhhhhc---cCceeCCCCHHHHHHHHHHHhCCCH--HHHHHHHHHHHHHh-hcCChhHHHHHHHHHH
Q psy9705 18 GVLIVSPFAGAGEQMH---EALICNPYEIDAAAEVIHRALTMPE--DERTLRMNYLRKRE-KVHDVNYWMRSFLKGM 88 (140)
Q Consensus 18 g~LiLSEfaG~a~~L~---~ai~VNP~d~~~~A~ai~~AL~m~~--~er~~r~~~l~~~V-~~~~~~~W~~~~l~~l 88 (140)
-|+|.|...|..+.+. .-++|.|-|..++++++..+..+.. +++...-+..+++| .+++...-++.+++-+
T Consensus 497 lPVVATdvGG~~EiV~dG~nG~LVp~~D~~aLa~ai~lA~aL~~ll~~~~~mg~~ARe~V~e~FS~e~Mv~~y~ki~ 573 (578)
T PRK15490 497 VPVISTPAGGSAECFIEGVSGFILDDAQTVNLDQACRYAEKLVNLWRSRTGICQQTQSFLQERFTVEHMVGTFVKTI 573 (578)
T ss_pred CCEEEeCCCCcHHHcccCCcEEEECCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHH
Confidence 3788999888888773 3688999999999998865554432 22222223344544 3456555555554433
No 102
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=52.76 E-value=49 Score=26.30 Aligned_cols=47 Identities=15% Similarity=0.069 Sum_probs=34.3
Q ss_pred CceeCCCC--HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCChhHHHH
Q psy9705 35 ALICNPYE--IDAAAEVIHRALTMPEDERTLRMNYLRKREKVHDVNYWMR 82 (140)
Q Consensus 35 ai~VNP~d--~~~~A~ai~~AL~m~~~er~~r~~~l~~~V~~~~~~~W~~ 82 (140)
.+.+.|-| .++++++|...+. .++.+++..+...+++..+....+++
T Consensus 298 G~~~~~~~~~~~~l~~~i~~ll~-~~~~~~~~~~~~~~~~~~~~~~~i~~ 346 (348)
T TIGR01133 298 GLVIRQKELLPEKLLEALLKLLL-DPANLEAMAEAARKLAKPDAAKRIAE 346 (348)
T ss_pred EEEEecccCCHHHHHHHHHHHHc-CHHHHHHHHHHHHhcCCccHHHHHHh
Confidence 56777765 9999999999884 56666666666667777776666554
No 103
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=51.84 E-value=20 Score=28.15 Aligned_cols=88 Identities=14% Similarity=0.103 Sum_probs=39.0
Q ss_pred HHhCCCHHHHHHHHHHHHHHhhcCCh--hHHHHHHHHHHHHhhHhhCCCCCCCc-ccccccccHHHHHHHHHccCCCceE
Q psy9705 52 RALTMPEDERTLRMNYLRKREKVHDV--NYWMRSFLKGMGTLITEDGDDVLPTT-MQPVTLEDFDEYLSKYIGTHEQAWA 128 (140)
Q Consensus 52 ~AL~m~~~er~~r~~~l~~~V~~~~~--~~W~~~~l~~l~~~~~~~~~~~~~~~-~~p~~~~~~~~~~~~Y~~s~~R~rl 128 (140)
-.|+|+.+|-..|.-.....|..... ..+...-...+..+...-....+-.. ...++++++....+.++....++.+
T Consensus 54 ~SlEm~~~~l~~R~la~~s~v~~~~i~~g~l~~~e~~~~~~~~~~l~~~~l~i~~~~~~~~~~i~~~i~~~~~~~~~~~~ 133 (259)
T PF03796_consen 54 FSLEMSEEELAARLLARLSGVPYNKIRSGDLSDEEFERLQAAAEKLSDLPLYIEDTPSLTIDDIESKIRRLKREGKKVDV 133 (259)
T ss_dssp EESSS-HHHHHHHHHHHHHTSTHHHHHCCGCHHHHHHHHHHHHHHHHTSEEEEEESSS-BHHHHHHHHHHHHHHSTTEEE
T ss_pred EcCCCCHHHHHHHHHHHhhcchhhhhhccccCHHHHHHHHHHHHHHhhCcEEEECCCCCCHHHHHHHHHHHHhhccCCCE
Confidence 35789998888887665544432211 11112222223222111111111000 1113334555556666554233579
Q ss_pred EEEeccccccC
Q psy9705 129 LLLDYDGELWL 139 (140)
Q Consensus 129 ~~lDydGTL~~ 139 (140)
+|+||=+-|.+
T Consensus 134 v~IDyl~ll~~ 144 (259)
T PF03796_consen 134 VFIDYLQLLKS 144 (259)
T ss_dssp EEEEEGGGSBT
T ss_pred EEechHHHhcC
Confidence 99999665543
No 104
>COG3882 FkbH Predicted enzyme involved in methoxymalonyl-ACP biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=51.43 E-value=13 Score=33.42 Aligned_cols=27 Identities=33% Similarity=0.633 Sum_probs=20.0
Q ss_pred cHHHHHHHHHccCCCceEEEEeccccccC
Q psy9705 111 DFDEYLSKYIGTHEQAWALLLDYDGELWL 139 (140)
Q Consensus 111 ~~~~~~~~Y~~s~~R~rl~~lDydGTL~~ 139 (140)
.+..++.+-....+| .+.||.|+||+.
T Consensus 209 ei~Sl~~A~~g~~kK--~LVLDLDNTLWG 235 (574)
T COG3882 209 EIASLLAAMSGKSKK--ALVLDLDNTLWG 235 (574)
T ss_pred HHHHHHHHhhCcccc--eEEEecCCcccc
Confidence 455666666555555 999999999974
No 105
>KOG1387|consensus
Probab=51.15 E-value=46 Score=29.00 Aligned_cols=49 Identities=16% Similarity=0.127 Sum_probs=37.7
Q ss_pred CHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHH
Q psy9705 42 EIDAAAEVIHRALTMPEDERTLRMNYLRKREKVHDVNYWMRSFLKGMGT 90 (140)
Q Consensus 42 d~~~~A~ai~~AL~m~~~er~~r~~~l~~~V~~~~~~~W~~~~l~~l~~ 90 (140)
+.+|-||+|.++++|..+||..-.+..++.+.+..-+..-+.|.+.+..
T Consensus 410 t~~EYaE~iLkIv~~~~~~r~~~r~~AR~s~~RFsE~~F~kd~~~~i~k 458 (465)
T KOG1387|consen 410 TDEEYAEAILKIVKLNYDERNMMRRNARKSLARFGELKFDKDWENPICK 458 (465)
T ss_pred ChHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhhHHHHHHhHhHHHHH
Confidence 4688999999999999999887777777777777666666666655443
No 106
>PLN02316 synthase/transferase
Probab=49.53 E-value=51 Score=32.10 Aligned_cols=41 Identities=12% Similarity=0.160 Sum_probs=32.5
Q ss_pred eEEeCcCcchhhhhc----------------cCceeCCCCHHHHHHHHHHHhCCCHH
Q psy9705 19 VLIVSPFAGAGEQMH----------------EALICNPYEIDAAAEVIHRALTMPED 59 (140)
Q Consensus 19 ~LiLSEfaG~a~~L~----------------~ai~VNP~d~~~~A~ai~~AL~m~~~ 59 (140)
+.|.+.-.|...... .-+++.|.|.++++++|..||....+
T Consensus 945 ppVvs~vGGL~DtV~d~d~~~~~~~~~g~~~tGflf~~~d~~aLa~AL~raL~~~~~ 1001 (1036)
T PLN02316 945 IPVVRKTGGLFDTVFDVDHDKERAQAQGLEPNGFSFDGADAAGVDYALNRAISAWYD 1001 (1036)
T ss_pred CeEEEcCCCcHhhccccccccccccccccCCceEEeCCCCHHHHHHHHHHHHhhhhh
Confidence 677787777777652 25799999999999999999987543
No 107
>PF14682 SPOB_ab: Sporulation initiation phospho-transferase B, C-terminal; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=48.48 E-value=14 Score=26.49 Aligned_cols=49 Identities=20% Similarity=0.489 Sum_probs=26.5
Q ss_pred hhHHHHHHHHHHHHhhHhhCCCCCCCcccccccccHHHHHHHHHccCCCceEEEEeccccccC
Q psy9705 77 VNYWMRSFLKGMGTLITEDGDDVLPTTMQPVTLEDFDEYLSKYIGTHEQAWALLLDYDGELWL 139 (140)
Q Consensus 77 ~~~W~~~~l~~l~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~Y~~s~~R~rl~~lDydGTL~~ 139 (140)
...|...|+.-+....+.... +..-++... . ...+++ .|+|||-|+|..
T Consensus 38 L~~w~~~ff~~l~~~v~~~~e-----Nhl~vsiq~-~-------~~d~~~-~~fFDf~G~l~~ 86 (115)
T PF14682_consen 38 LTTWMRTFFSLLEEHVDPEGE-----NHLSVSIQT-D-------HPDNGV-RFFFDFSGILTD 86 (115)
T ss_dssp HHHHHHHHHHHHHHHB-SSS------EEEEEEEES----------SSSSE-EEEEEEES-BS-
T ss_pred HHHHHHHHHHHHHHhcCcccC-----CeEEEEEEE-e-------cCCCcE-EEEEEccEEEcC
Confidence 468999999999877433211 111122211 1 112442 499999999973
No 108
>PRK11009 aphA acid phosphatase/phosphotransferase; Provisional
Probab=47.21 E-value=18 Score=28.88 Aligned_cols=32 Identities=19% Similarity=0.226 Sum_probs=20.9
Q ss_pred ccccccHHHHHHHHHccCCCceEEEEeccccccC
Q psy9705 106 PVTLEDFDEYLSKYIGTHEQAWALLLDYDGELWL 139 (140)
Q Consensus 106 p~~~~~~~~~~~~Y~~s~~R~rl~~lDydGTL~~ 139 (140)
|+..-+++++.+.-...+.. .+.||.|||++.
T Consensus 45 ~~~~~~~~~~~~~~~~~~p~--av~~DIDeTvld 76 (237)
T PRK11009 45 PVHWVSVAQIEKSLEGRPPM--AVGFDIDDTVLF 76 (237)
T ss_pred CeeEEEHHHhhhhccCCCCc--EEEEECcCcccc
Confidence 33333667776665433343 699999999984
No 109
>PRK00083 frr ribosome recycling factor; Reviewed
Probab=45.68 E-value=9.3 Score=29.52 Aligned_cols=36 Identities=14% Similarity=0.279 Sum_probs=21.0
Q ss_pred eeEEeCcCcchhhhhccCceeCCCCHHHHHHHHHHHh
Q psy9705 18 GVLIVSPFAGAGEQMHEALICNPYEIDAAAEVIHRAL 54 (140)
Q Consensus 18 g~LiLSEfaG~a~~L~~ai~VNP~d~~~~A~ai~~AL 54 (140)
+..-|++.|..+.-=+..|.|+||| .....+|.+|+
T Consensus 47 ~~~pL~~lA~Isv~~~~~l~I~p~D-~~~i~~I~kAI 82 (185)
T PRK00083 47 SPTPLNQVASISVPEARTLLIQPWD-KSMLKAIEKAI 82 (185)
T ss_pred CCccHHHceeeecCCCCEEEEEeCC-HhHHHHHHHHH
Confidence 3455677766543323479999999 33444444443
No 110
>PF01808 AICARFT_IMPCHas: AICARFT/IMPCHase bienzyme; InterPro: IPR002695 This is a family of bifunctional enzymes catalysing the last two steps in de novo purine biosynthesis. The bifunctional enzyme is found in both prokaryotes and eukaryotes. The second last step is catalysed by 5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase 2.1.2.3 from EC (AICARFT), this enzyme catalyses the formylation of AICAR with 10-formyl-tetrahydrofolate to yield FAICAR and tetrahydrofolate []. The last step is catalysed by IMP (Inosine monophosphate) cyclohydrolase 3.5.4.10 from EC (IMPCHase), cyclizing FAICAR (5-formylaminoimidazole-4-carboxamide ribonucleotide) to IMP [].; GO: 0003937 IMP cyclohydrolase activity, 0004643 phosphoribosylaminoimidazolecarboxamide formyltransferase activity, 0006164 purine nucleotide biosynthetic process; PDB: 1ZCZ_A 1PL0_D 1PKX_C 1P4R_B 1G8M_B 2IU3_B 2B1I_A 2B1G_D 1OZ0_B 1M9N_B ....
Probab=43.68 E-value=23 Score=29.75 Aligned_cols=52 Identities=10% Similarity=0.130 Sum_probs=39.8
Q ss_pred CceeCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCh--hHHHHHHHH
Q psy9705 35 ALICNPYEIDAAAEVIHRALTMPEDERTLRMNYLRKREKVHDV--NYWMRSFLK 86 (140)
Q Consensus 35 ai~VNP~d~~~~A~ai~~AL~m~~~er~~r~~~l~~~V~~~~~--~~W~~~~l~ 86 (140)
++++||-|++++.+.|+.-=..+.+.|++...+.+.+...+|+ ..|......
T Consensus 9 ~Vv~dP~dY~~vl~el~~~G~~s~~~R~~LA~kAF~~Ta~YD~aIa~yl~~~~~ 62 (315)
T PF01808_consen 9 TVVVDPADYDEVLEELKSNGEISLETRRRLAAKAFAHTAAYDAAIANYLSEQFG 62 (315)
T ss_dssp EEE-SGGGHHHHHHHHHTTTSB-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred EEECCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 7889999999999999984467888899888888888888764 455555444
No 111
>PTZ00445 p36-lilke protein; Provisional
Probab=41.11 E-value=20 Score=28.66 Aligned_cols=27 Identities=11% Similarity=0.150 Sum_probs=21.4
Q ss_pred cHHHHHHHHHccCCCceEEEEeccccccC
Q psy9705 111 DFDEYLSKYIGTHEQAWALLLDYDGELWL 139 (140)
Q Consensus 111 ~~~~~~~~Y~~s~~R~rl~~lDydGTL~~ 139 (140)
..+.+++.+++..=| ++++|+|-||++
T Consensus 30 ~~~~~v~~L~~~GIk--~Va~D~DnTlI~ 56 (219)
T PTZ00445 30 SADKFVDLLNECGIK--VIASDFDLTMIT 56 (219)
T ss_pred HHHHHHHHHHHcCCe--EEEecchhhhhh
Confidence 446677788776655 999999999985
No 112
>smart00798 AICARFT_IMPCHas AICARFT/IMPCHase bienzyme. This is a family of bifunctional enzymes catalysing the last two steps in de novo purine biosynthesis. The bifunctional enzyme is found in both prokaryotes and eukaryotes. The second last step is catalysed by 5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase (AICARFT), this enzyme catalyses the formylation of AICAR with 10-formyl-tetrahydrofolate to yield FAICAR and tetrahydrofolate. The last step is catalysed by IMP (Inosine monophosphate) cyclohydrolase (IMPCHase), cyclizing FAICAR (5-formylaminoimidazole-4-carboxamide ribonucleotide) to IMP.
Probab=40.69 E-value=28 Score=29.27 Aligned_cols=48 Identities=8% Similarity=0.122 Sum_probs=39.7
Q ss_pred CceeCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCh--hHHHH
Q psy9705 35 ALICNPYEIDAAAEVIHRALTMPEDERTLRMNYLRKREKVHDV--NYWMR 82 (140)
Q Consensus 35 ai~VNP~d~~~~A~ai~~AL~m~~~er~~r~~~l~~~V~~~~~--~~W~~ 82 (140)
.+.+||-|++.+.+.|+..=..+.+.|++...+.+++...+|+ ..|..
T Consensus 9 ~Vv~dP~dY~~vl~el~~~g~~s~~~R~~LA~kAF~~Ta~YD~aIa~yl~ 58 (311)
T smart00798 9 TVVVDPADYAEVLEELKAGGGLSLETRKRLAAKAFAHTAAYDAAISNYLA 58 (311)
T ss_pred EEECCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999999975457888899999999988888874 45654
No 113
>KOG2134|consensus
Probab=40.33 E-value=15 Score=31.98 Aligned_cols=12 Identities=42% Similarity=0.797 Sum_probs=10.7
Q ss_pred EEEEeccccccC
Q psy9705 128 ALLLDYDGELWL 139 (140)
Q Consensus 128 l~~lDydGTL~~ 139 (140)
.+.|||||||+.
T Consensus 77 ~i~FD~dgtlI~ 88 (422)
T KOG2134|consen 77 IIMFDYDGTLID 88 (422)
T ss_pred eEEEecCCceee
Confidence 699999999974
No 114
>PLN00414 glycosyltransferase family protein
Probab=36.98 E-value=1.8e+02 Score=25.23 Aligned_cols=51 Identities=4% Similarity=0.128 Sum_probs=33.6
Q ss_pred CCHHHHHHHHHHHhCCCHH---HHHHHHHHHHHHhhcCCh-hHHHHHHHHHHHHh
Q psy9705 41 YEIDAAAEVIHRALTMPED---ERTLRMNYLRKREKVHDV-NYWMRSFLKGMGTL 91 (140)
Q Consensus 41 ~d~~~~A~ai~~AL~m~~~---er~~r~~~l~~~V~~~~~-~~W~~~~l~~l~~~ 91 (140)
...+++++++.+.+.-+.+ +-+++.+++.+....... ..|.+.|++++.+.
T Consensus 387 ~~~~~i~~~v~~~m~~~~e~g~~~r~~a~~~~~~~~~~gg~ss~l~~~v~~~~~~ 441 (446)
T PLN00414 387 FSKESLRDTVKSVMDKDSEIGNLVKRNHKKLKETLVSPGLLSGYADKFVEALENE 441 (446)
T ss_pred cCHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHh
Confidence 6789999999999976432 234444555555444443 67788888887544
No 115
>PF08496 Peptidase_S49_N: Peptidase family S49 N-terminal; InterPro: IPR013703 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain is found to the N terminus of bacterial signal peptidases that belong to the MEROPS peptidase family S49 (protease IV family, clan SK) (see also IPR002142 from INTERPRO) [, ]. ; GO: 0004252 serine-type endopeptidase activity, 0005886 plasma membrane
Probab=35.13 E-value=25 Score=26.49 Aligned_cols=14 Identities=21% Similarity=0.731 Sum_probs=11.4
Q ss_pred cCCCceEEEEeccccc
Q psy9705 122 THEQAWALLLDYDGEL 137 (140)
Q Consensus 122 s~~R~rl~~lDydGTL 137 (140)
.+.| +|+||++|.+
T Consensus 96 ~~~r--~~VldF~Gdi 109 (155)
T PF08496_consen 96 PKPR--LFVLDFKGDI 109 (155)
T ss_pred CCCe--EEEEecCCCc
Confidence 4556 9999999975
No 116
>PF01765 RRF: Ribosome recycling factor; InterPro: IPR023584 The ribosome recycling factor or ribosome release factor (RRF) dissociates ribosomes from mRNA after termination of translation, and is essential for bacterial growth []. Thus ribosomes are 'recycled' and ready for another round of protein synthesis. This entry represents a domain found in ribosome recycling factors.; PDB: 3R8N_Y 1Y69_8 1ISE_A 1EK8_A 1DD5_A 1WIH_A 2Z4L_6 2QBE_6 2V46_Y 1EH1_A ....
Probab=33.22 E-value=18 Score=27.12 Aligned_cols=37 Identities=16% Similarity=0.336 Sum_probs=26.1
Q ss_pred eeEEeCcCcchhhhhccCceeCCCCHHHHHHHHHHHhC
Q psy9705 18 GVLIVSPFAGAGEQMHEALICNPYEIDAAAEVIHRALT 55 (140)
Q Consensus 18 g~LiLSEfaG~a~~L~~ai~VNP~d~~~~A~ai~~AL~ 55 (140)
+..-|+|.|..+.-=+..+.|+||| .....+|..|+.
T Consensus 29 ~~~~L~~lA~V~~~~~~~l~I~~~d-~~~i~~I~kAI~ 65 (165)
T PF01765_consen 29 SKVPLNELAQVSVKDPRTLVITPYD-PSLIKAIEKAIQ 65 (165)
T ss_dssp EEEEGGGTEEEEEEETTEEEEEESS-TTHHHHHHHHHH
T ss_pred CCccHHHceeeecCCCCEEEEEecc-ccchHHHHHHHH
Confidence 5778888887654323479999999 666666666653
No 117
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=32.63 E-value=1.4e+02 Score=23.99 Aligned_cols=51 Identities=14% Similarity=0.035 Sum_probs=32.3
Q ss_pred CceeCCCC--HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCChhHHHHHHHH
Q psy9705 35 ALICNPYE--IDAAAEVIHRALTMPEDERTLRMNYLRKREKVHDVNYWMRSFLK 86 (140)
Q Consensus 35 ai~VNP~d--~~~~A~ai~~AL~m~~~er~~r~~~l~~~V~~~~~~~W~~~~l~ 86 (140)
.+.+.|-| .++++++|.+.+.. ++.+.+-.+...++....+...=++.+++
T Consensus 301 g~~~~~~~~~~~~l~~~i~~ll~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (357)
T PRK00726 301 ALLIPQSDLTPEKLAEKLLELLSD-PERLEAMAEAARALGKPDAAERLADLIEE 353 (357)
T ss_pred EEEEEcccCCHHHHHHHHHHHHcC-HHHHHHHHHHHHhcCCcCHHHHHHHHHHH
Confidence 45666666 89999999999986 44554444444555555555544444443
No 118
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=31.97 E-value=1.1e+02 Score=24.80 Aligned_cols=36 Identities=17% Similarity=0.198 Sum_probs=23.6
Q ss_pred eEEeCcCcchhhhh-cc-CceeCCCCHHHHHHHHHHHhC
Q psy9705 19 VLIVSPFAGAGEQM-HE-ALICNPYEIDAAAEVIHRALT 55 (140)
Q Consensus 19 ~LiLSEfaG~a~~L-~~-ai~VNP~d~~~~A~ai~~AL~ 55 (140)
+++++...|..+.. .+ .+.+ |.|.++++++|.+.+.
T Consensus 296 vI~~~~~~~~~e~~~~g~~~lv-~~d~~~i~~ai~~ll~ 333 (365)
T TIGR00236 296 VLVLRDTTERPETVEAGTNKLV-GTDKENITKAAKRLLT 333 (365)
T ss_pred EEECCCCCCChHHHhcCceEEe-CCCHHHHHHHHHHHHh
Confidence 33334555554444 23 4455 6899999999999887
No 119
>cd07316 terB_like_DjlA N-terminal tellurium resistance protein terB-like domain of heat shock DnaJ-like proteins. Tellurium resistance terB-like domain of the DnaJ-like DjlA proteins. This family represents the terB-like domain of DjlA-like proteins, a subgroup of heat shock DnaJ-like proteins. Escherichia coli DjlA is a type III membrane protein with a small N-terminal transmembrane region and DnaJ-like domain on the extreme C-terminus. Overproduction has been shown to activate the RcsC pathway, which regulates the production of the capsular exopolysaccharide colanic acid. The specific function of this domain is unknown.
Probab=31.89 E-value=1.5e+02 Score=19.52 Aligned_cols=34 Identities=12% Similarity=0.116 Sum_probs=26.5
Q ss_pred CCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh
Q psy9705 39 NPYEIDAAAEVIHRALTMPEDERTLRMNYLRKRE 72 (140)
Q Consensus 39 NP~d~~~~A~ai~~AL~m~~~er~~r~~~l~~~V 72 (140)
++.++.+++..+...+..++++|..-..-+....
T Consensus 51 ~~~~~~~~~~~l~~~~~~~~~~r~~~l~~l~~vA 84 (106)
T cd07316 51 SDFGLEEYARQFRRACGGRPELLLQLLEFLFQIA 84 (106)
T ss_pred CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 4478888888988888888888887777766554
No 120
>COG0138 PurH AICAR transformylase/IMP cyclohydrolase PurH (only IMP cyclohydrolase domain in Aful) [Nucleotide transport and metabolism]
Probab=30.97 E-value=77 Score=28.45 Aligned_cols=51 Identities=12% Similarity=0.150 Sum_probs=42.7
Q ss_pred CceeCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCh--hHHHHHHH
Q psy9705 35 ALICNPYEIDAAAEVIHRALTMPEDERTLRMNYLRKREKVHDV--NYWMRSFL 85 (140)
Q Consensus 35 ai~VNP~d~~~~A~ai~~AL~m~~~er~~r~~~l~~~V~~~~~--~~W~~~~l 85 (140)
+++++|-|+..+.+.|..--+++.+.|.+-..+.+++...+|. ..|....+
T Consensus 142 ~V~~dp~Dy~~vl~~l~~~~~~~~~~R~~lA~kaF~hTA~YDaaI~~~~~~~~ 194 (515)
T COG0138 142 TVVVDPADYAAVLEELKANGELSLATRKRLAAKAFEHTAAYDAAIANYFSELL 194 (515)
T ss_pred eEEecchhhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhc
Confidence 7899999999999999977799999999988888888888874 56665443
No 121
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=30.70 E-value=26 Score=23.81 Aligned_cols=34 Identities=26% Similarity=0.284 Sum_probs=22.2
Q ss_pred eEEeCcCcchhhhh---ccCceeCCCCHHHHHHHHHHHh
Q psy9705 19 VLIVSPFAGAGEQM---HEALICNPYEIDAAAEVIHRAL 54 (140)
Q Consensus 19 ~LiLSEfaG~a~~L---~~ai~VNP~d~~~~A~ai~~AL 54 (140)
|+|.|.. |+.+.. +..+.+ +-|.++++++|.+.+
T Consensus 97 pvi~~~~-~~~~~~~~~~~~~~~-~~~~~~l~~~i~~l~ 133 (135)
T PF13692_consen 97 PVIASDN-GAEGIVEEDGCGVLV-ANDPEELAEAIERLL 133 (135)
T ss_dssp -EEEEHH-HCHCHS---SEEEE--TT-HHHHHHHHHHHH
T ss_pred CEEECCc-chhhheeecCCeEEE-CCCHHHHHHHHHHHh
Confidence 5666776 555554 235566 889999999998876
No 122
>PF02775 TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; InterPro: IPR011766 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the C-terminal TPP binding domain of TPP enzymes.; GO: 0003824 catalytic activity, 0030976 thiamine pyrophosphate binding; PDB: 2WVA_V 1ZPD_F 2WVG_B 2WVH_B 3OE1_D 2NXW_A 2Q5L_B 2Q5Q_B 2Q5J_A 2Q5O_A ....
Probab=29.02 E-value=41 Score=24.15 Aligned_cols=31 Identities=19% Similarity=0.209 Sum_probs=23.8
Q ss_pred cCcchhhhhcc-CceeCCCCHHHHHHHHHHHh
Q psy9705 24 PFAGAGEQMHE-ALICNPYEIDAAAEVIHRAL 54 (140)
Q Consensus 24 EfaG~a~~L~~-ai~VNP~d~~~~A~ai~~AL 54 (140)
.|...++.++. +.+|++.|.+++.++|.+|+
T Consensus 112 d~~~~a~a~G~~~~~v~~~~~~el~~al~~a~ 143 (153)
T PF02775_consen 112 DFAALAEAFGIKGARVTTPDPEELEEALREAL 143 (153)
T ss_dssp GHHHHHHHTTSEEEEESCHSHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCcEEEEccCCHHHHHHHHHHHH
Confidence 45666667753 67888888888888888887
No 123
>PRK00881 purH bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional
Probab=27.32 E-value=60 Score=29.16 Aligned_cols=48 Identities=15% Similarity=0.151 Sum_probs=39.5
Q ss_pred CceeCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCh--hHHHH
Q psy9705 35 ALICNPYEIDAAAEVIHRALTMPEDERTLRMNYLRKREKVHDV--NYWMR 82 (140)
Q Consensus 35 ai~VNP~d~~~~A~ai~~AL~m~~~er~~r~~~l~~~V~~~~~--~~W~~ 82 (140)
++.+||-|++.+.+.|+.-=..|.+.|++...+.+++...+|+ ..|..
T Consensus 144 ~Vv~dp~dY~~v~~~l~~~g~~s~~~R~~lA~kAF~~ta~YD~~I~~yl~ 193 (513)
T PRK00881 144 AVVVDPADYDAVLEELKANGSTTLETRFRLAAKAFAHTAAYDAAIANYLT 193 (513)
T ss_pred EEECCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5889999999999999864467888899999998888888864 45654
No 124
>KOG4759|consensus
Probab=27.16 E-value=25 Score=28.84 Aligned_cols=34 Identities=15% Similarity=0.187 Sum_probs=20.1
Q ss_pred eEEeCcCcchhhhhccCceeCCCC-HHHHHHHHHHH
Q psy9705 19 VLIVSPFAGAGEQMHEALICNPYE-IDAAAEVIHRA 53 (140)
Q Consensus 19 ~LiLSEfaG~a~~L~~ai~VNP~d-~~~~A~ai~~A 53 (140)
..-|+|.|-.+.-=+..|+||||| ...+.+ |.+|
T Consensus 127 ~~~L~~IA~vS~K~p~~ilIn~~d~p~~ika-i~kA 161 (263)
T KOG4759|consen 127 KRPLNEIAQVSLKGPQTILINPFDFPVDIKA-ILKA 161 (263)
T ss_pred cccHHHHHHHhcCCCceEEEecccCchHHHH-HHHH
Confidence 556666665432212489999999 444444 4444
No 125
>PF14038 YqzE: YqzE-like protein
Probab=27.07 E-value=1.7e+02 Score=18.36 Aligned_cols=37 Identities=24% Similarity=0.329 Sum_probs=22.7
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCChhHHHH
Q psy9705 45 AAAEVIHRALTMPEDERTLRMNYLRKREKVHDVNYWMR 82 (140)
Q Consensus 45 ~~A~ai~~AL~m~~~er~~r~~~l~~~V~~~~~~~W~~ 82 (140)
=+.+.+-+=+..|.+||+++-+. .+.....=+.+|.-
T Consensus 8 y~Tqq~V~YmdtPkeERk~~k~~-rK~~k~p~~~rWFG 44 (54)
T PF14038_consen 8 YMTQQFVKYMDTPKEERKERKEE-RKEEKEPFSYRWFG 44 (54)
T ss_pred HHHHHHHHHhhCCHHHHHHHHHH-HHhcCCcHHHHHHh
Confidence 35666777788999999887433 33333333445543
No 126
>KOG1605|consensus
Probab=25.70 E-value=44 Score=27.32 Aligned_cols=16 Identities=31% Similarity=0.412 Sum_probs=12.9
Q ss_pred ccCCCceEEEEecccccc
Q psy9705 121 GTHEQAWALLLDYDGELW 138 (140)
Q Consensus 121 ~s~~R~rl~~lDydGTL~ 138 (140)
...|+ .++||.|+||+
T Consensus 86 ~~~kk--~lVLDLDeTLv 101 (262)
T KOG1605|consen 86 TVGRK--TLVLDLDETLV 101 (262)
T ss_pred cCCCc--eEEEeCCCccc
Confidence 34455 99999999997
No 127
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=25.47 E-value=50 Score=26.24 Aligned_cols=12 Identities=42% Similarity=0.625 Sum_probs=10.9
Q ss_pred EEEEeccccccC
Q psy9705 128 ALLLDYDGELWL 139 (140)
Q Consensus 128 l~~lDydGTL~~ 139 (140)
++++|.||||..
T Consensus 160 ~~~~D~dgtl~~ 171 (300)
T PHA02530 160 AVIFDIDGTLAK 171 (300)
T ss_pred EEEEECCCcCcC
Confidence 899999999974
No 128
>KOG0754|consensus
Probab=25.21 E-value=24 Score=29.17 Aligned_cols=28 Identities=29% Similarity=0.488 Sum_probs=22.3
Q ss_pred EeCcCcchhhhhccCceeCCCCHHHHHH
Q psy9705 21 IVSPFAGAGEQMHEALICNPYEIDAAAE 48 (140)
Q Consensus 21 iLSEfaG~a~~L~~ai~VNP~d~~~~A~ 48 (140)
..|-+||++..+..|+.||||.+..+..
T Consensus 107 ~t~~~aG~~ag~tEa~vV~PFEvvKirl 134 (294)
T KOG0754|consen 107 LTSILAGLSAGLTEAFVVNPFEVVKIRL 134 (294)
T ss_pred HHHHHhhhhhcchheeEecceeeEEeeh
Confidence 4567899998999999999997655543
No 129
>PF10881 DUF2726: Protein of unknown function (DUF2726); InterPro: IPR024402 This domain found in bacterial proteins has no known function.
Probab=25.11 E-value=1.1e+02 Score=21.32 Aligned_cols=52 Identities=17% Similarity=0.354 Sum_probs=35.8
Q ss_pred CCcceeeeecccCCCCeeEEeCcCcchhhh--------------hc--c--CceeC---CCCHHHHHHHHHHHh
Q psy9705 2 NLVAKEFVACQINEPPGVLIVSPFAGAGEQ--------------MH--E--ALICN---PYEIDAAAEVIHRAL 54 (140)
Q Consensus 2 NLva~Eyv~~q~~~~~g~LiLSEfaG~a~~--------------L~--~--ai~VN---P~d~~~~A~ai~~AL 54 (140)
|-....||+|.... ..|+.+=|+-|.+.. |. | -++++ .++.+++.+.|++||
T Consensus 54 ~~~~vDFvv~d~~~-~~p~~vIEld~~~h~~~~~~~rD~~k~~~l~~agiplir~~~~~~~~~~~l~~~l~~~~ 126 (126)
T PF10881_consen 54 NQKHVDFVVCDKRD-GRPVAVIELDGSSHDQEKRQERDEFKDRVLKKAGIPLIRISPKDSYSVEELRRDLREAL 126 (126)
T ss_pred cCCCccEEEEECCC-CcEEEEEEecCccccchhhHHHHHHHHHHHHHCCCCEEEEeCCCCCCHHHHHHHHHHhC
Confidence 33457899998554 678888898887422 21 1 24553 578889999998886
No 130
>PF05989 Chordopox_A35R: Chordopoxvirus A35R protein; InterPro: IPR009247 This family consists of several Chordopoxvirus sequences homologous to the Vaccinia virus A35R protein. The function of this family is unknown.
Probab=24.82 E-value=62 Score=25.09 Aligned_cols=26 Identities=15% Similarity=0.166 Sum_probs=20.8
Q ss_pred cHHHHHHHHHccCCCceEEEEecccccc
Q psy9705 111 DFDEYLSKYIGTHEQAWALLLDYDGELW 138 (140)
Q Consensus 111 ~~~~~~~~Y~~s~~R~rl~~lDydGTL~ 138 (140)
.+..+..+|+...+. +|.+||++.|.
T Consensus 82 Pi~~I~~ay~s~n~~--iiccD~~~~l~ 107 (176)
T PF05989_consen 82 PITKIYAAYRSKNSF--IICCDKDPKLS 107 (176)
T ss_pred cHHHHhHHhccCCcE--EEEecCcceEE
Confidence 447899999765555 99999999885
No 131
>KOG4072|consensus
Probab=24.63 E-value=25 Score=25.68 Aligned_cols=12 Identities=33% Similarity=0.645 Sum_probs=9.9
Q ss_pred EEEeccccccCC
Q psy9705 129 LLLDYDGELWLP 140 (140)
Q Consensus 129 ~~lDydGTL~~~ 140 (140)
=|||-+|||+.|
T Consensus 96 kffDh~Gtl~~p 107 (127)
T KOG4072|consen 96 KFFDHSGTLVMP 107 (127)
T ss_pred HHccCCCeEecc
Confidence 478999999865
No 132
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=23.87 E-value=1.6e+02 Score=23.28 Aligned_cols=41 Identities=10% Similarity=0.049 Sum_probs=27.7
Q ss_pred CceeCCC--CHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCC
Q psy9705 35 ALICNPY--EIDAAAEVIHRALTMPEDERTLRMNYLRKREKVHD 76 (140)
Q Consensus 35 ai~VNP~--d~~~~A~ai~~AL~m~~~er~~r~~~l~~~V~~~~ 76 (140)
.+.+.|. |.++++++|...+. .++.+.+--+..++++..+.
T Consensus 301 g~~v~~~~~~~~~l~~~i~~ll~-~~~~~~~~~~~~~~~~~~~~ 343 (350)
T cd03785 301 AVLIPQEELTPERLAAALLELLS-DPERLKAMAEAARSLARPDA 343 (350)
T ss_pred EEEEecCCCCHHHHHHHHHHHhc-CHHHHHHHHHHHHhcCCCCH
Confidence 5778887 89999999999885 55555544444455554433
No 133
>TIGR00355 purH phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase. Involved in purine ribonucleotide biosynthesis. The IMP cyclohydrolase activity is in the N-terminal region.
Probab=23.62 E-value=76 Score=28.52 Aligned_cols=49 Identities=8% Similarity=0.043 Sum_probs=39.5
Q ss_pred CceeCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCh--hHHHHH
Q psy9705 35 ALICNPYEIDAAAEVIHRALTMPEDERTLRMNYLRKREKVHDV--NYWMRS 83 (140)
Q Consensus 35 ai~VNP~d~~~~A~ai~~AL~m~~~er~~r~~~l~~~V~~~~~--~~W~~~ 83 (140)
++.+||-|++.+.+.|+.-=..+.+.|++...+.+++...+|+ ..|...
T Consensus 139 ~Vv~dp~dY~~vl~el~~~g~~s~~~R~~lA~kAF~~Ta~YD~~Ia~yl~~ 189 (511)
T TIGR00355 139 TILVDPKDYSAILSELDEQGSISLALRFDLAIKAFEHTAAYDAAIANYFGK 189 (511)
T ss_pred EEECCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5889999999999999864467888899988888888887764 456543
No 134
>PLN02275 transferase, transferring glycosyl groups
Probab=23.48 E-value=70 Score=26.33 Aligned_cols=35 Identities=14% Similarity=0.194 Sum_probs=25.2
Q ss_pred eeEEeCcCcchhhhhc-c--CceeCCCCHHHHHHHHHHHh
Q psy9705 18 GVLIVSPFAGAGEQMH-E--ALICNPYEIDAAAEVIHRAL 54 (140)
Q Consensus 18 g~LiLSEfaG~a~~L~-~--ai~VNP~d~~~~A~ai~~AL 54 (140)
-|+|.|...|..+.+. + -+.+. |.+++|++|.+.|
T Consensus 334 ~PVVa~~~gg~~eiv~~g~~G~lv~--~~~~la~~i~~l~ 371 (371)
T PLN02275 334 LPVCAVSYSCIGELVKDGKNGLLFS--SSSELADQLLELL 371 (371)
T ss_pred CCEEEecCCChHHHccCCCCeEEEC--CHHHHHHHHHHhC
Confidence 3677788778877774 2 45665 6899999987654
No 135
>TIGR01533 lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) family. which in turn belongs to the haloacid dehalogenase (HAD) superfamily of aspartate-dependent hydrolases. Members are found on the outer membrane of Gram-negative bacteria and the cytoplasmic membrane of Gram-positive bacteria. Most members have classic lipoprotein signal sequences. A critical role of this 5'-nucleotidase in Haemophilus influenzae is the degradation of external riboside in order to allow transport into the cell. An earlier suggested role in hemin transport is no longer current. This enzyme may also have other physiologically significant roles.
Probab=22.77 E-value=56 Score=26.60 Aligned_cols=13 Identities=31% Similarity=0.532 Sum_probs=11.2
Q ss_pred eEEEEeccccccC
Q psy9705 127 WALLLDYDGELWL 139 (140)
Q Consensus 127 rl~~lDydGTL~~ 139 (140)
..++||.|+|+.+
T Consensus 76 ~AVV~DIDeTvLd 88 (266)
T TIGR01533 76 YAIVLDLDETVLD 88 (266)
T ss_pred CEEEEeCcccccc
Confidence 3999999999864
No 136
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=22.74 E-value=3.7e+02 Score=22.32 Aligned_cols=51 Identities=10% Similarity=0.079 Sum_probs=36.0
Q ss_pred CCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHh
Q psy9705 40 PYEIDAAAEVIHRALTMPEDERTLRMNYLRKREKVHDVNYWMRSFLKGMGTL 91 (140)
Q Consensus 40 P~d~~~~A~ai~~AL~m~~~er~~r~~~l~~~V~~~~~~~W~~~~l~~l~~~ 91 (140)
+-|.++++++|.+-++- ++++.+-.+...+....++...-++.+++-+...
T Consensus 322 ~~~~~~l~~~i~~ll~~-~~~~~~m~~~~~~~~~~~s~~~i~~~l~~l~~~~ 372 (391)
T PRK13608 322 ADTPEEAIKIVASLTNG-NEQLTNMISTMEQDKIKYATQTICRDLLDLIGHS 372 (391)
T ss_pred eCCHHHHHHHHHHHhcC-HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhhh
Confidence 44888999999988874 4555555566667777777777777777665544
No 137
>PF02809 UIM: Ubiquitin interaction motif; InterPro: IPR003903 The Ubiquitin Interacting Motif (UIM), or 'LALAL-motif', is a stretch of about 20 amino acid residues, which was first described in the 26S proteasome subunit PSD4/RPN-10 that is known to recognise ubiquitin [,]. In addition, the UIM is found, often in tandem or triplet arrays, in a variety of proteins either involved in ubiquitination and ubiquitin metabolism, or known to interact with ubiquitin-like modifiers. Among the UIM proteins are two different subgroups of the UBP (ubiquitin carboxy-terminal hydrolase) family of deubiquitinating enzymes, one F-box protein, one family of HECT-containing ubiquitin-ligases (E3s) from plants, and several proteins containing ubiquitin-associated UBA and/or UBX domains []. In most of these proteins, the UIM occurs in multiple copies and in association with other domains such as UBA (IPR015940 from INTERPRO), UBX (IPR001012 from INTERPRO), ENTH, EH (IPR000261 from INTERPRO), VHS (IPR002014 from INTERPRO), SH3 (IPR001452 from INTERPRO), HECT (IPR000569 from INTERPRO), VWFA (IPR002035 from INTERPRO), EF-hand calcium-binding, WD-40 (IPR001680 from INTERPRO), F-box (IPR001810 from INTERPRO), LIM (IPR001781 from INTERPRO), protein kinase (IPR000719 from INTERPRO), ankyrin (IPR002110 from INTERPRO), PX (IPR001683 from INTERPRO), phosphatidylinositol 3- and 4-kinase (IPR000403 from INTERPRO), C2 (IPR000008 from INTERPRO), OTU (IPR003323 from INTERPRO), dnaJ (IPR001623 from INTERPRO), RING-finger (IPR001841 from INTERPRO) or FYVE-finger (IPR017455 from INTERPRO). UIMs have been shown to bind ubiquitin and to serve as a specific targeting signal important for monoubiquitination. Thus, UIMs may have several functions in ubiquitin metabolism each of which may require different numbers of UIMs [, , ]. The UIM is unlikely to form an independent folding domain. Instead, based on the spacing of the conserved residues, the motif probably forms a short alpha-helix that can be embedded into different protein folds []. Some proteins known to contain an UIM are listed below: Eukaryotic PSD4/RPN-10/S5, a multi-ubiquitin binding subunit of the 26S proteasome. Vertebrate Machado-Joseph disease protein 1 (Ataxin-3), which acts as a histone-binding protein that regulates transcription; defects in Ataxin-3 cause the neurodegenerative disorder Machado-Joseph disease (MJD). Vertebrate epsin and epsin2. Vertebrate hepatocyte growth factor-regulated tyrosine kinase substrate (HRS). Mammalian epidermal growth factor receptor substrate 15 (EPS15), which is involved in cell growth regulation. Mammalian epidermal growth factor receptor substrate EPS15R. Drosophila melanogaster (Fruit fly) liquid facets (lqf), an epsin. Yeast VPS27 vacuolar sorting protein, which is required for membrane traffic to the vacuole. ; PDB: 2KDE_A 2KDF_A 1YX6_A 1YX5_A 1YX4_A 1P9C_A 1UEL_B 1P9D_S 2KLZ_A.
Probab=22.64 E-value=29 Score=16.78 Aligned_cols=12 Identities=42% Similarity=0.565 Sum_probs=7.4
Q ss_pred HHHHHhCCCHHH
Q psy9705 49 VIHRALTMPEDE 60 (140)
Q Consensus 49 ai~~AL~m~~~e 60 (140)
.|..||.||.+|
T Consensus 6 ~L~~Al~~S~~e 17 (18)
T PF02809_consen 6 DLQRALEMSLEE 17 (18)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHhhhcc
Confidence 456677766554
No 138
>COG5083 SMP2 Uncharacterized protein involved in plasmid maintenance [General function prediction only]
Probab=22.42 E-value=55 Score=29.31 Aligned_cols=15 Identities=20% Similarity=0.379 Sum_probs=12.6
Q ss_pred CCCceEEEEeccccccC
Q psy9705 123 HEQAWALLLDYDGELWL 139 (140)
Q Consensus 123 ~~R~rl~~lDydGTL~~ 139 (140)
.+. .++.|.|||+|-
T Consensus 374 n~k--iVVsDiDGTITk 388 (580)
T COG5083 374 NKK--IVVSDIDGTITK 388 (580)
T ss_pred CCc--EEEEecCCcEEe
Confidence 455 899999999984
No 139
>cd08812 CARD_RIG-I_like Caspase activation and recruitment domains found in RIG-I-like DEAD box helicases. Caspase activation and recruitment domains (CARDs) found in Retinoic acid Inducible Gene I (RIG-I)-like DEAD box helicases. These helicases, including MDA5 and RIG-I, contain two N-terminal CARD domains and a C-terminal DEAD box RNA helicase domain. They are cytoplasmic RNA helicases that play an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, RIG-I and MDA5 have been shown to recognize different sets of viruses. MDA5 and RIG-I associate with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mec
Probab=21.90 E-value=2.3e+02 Score=18.91 Aligned_cols=30 Identities=20% Similarity=0.291 Sum_probs=21.4
Q ss_pred HHHHHHHHHHhhcCChhHHHHHHHHHHHHh
Q psy9705 62 TLRMNYLRKREKVHDVNYWMRSFLKGMGTL 91 (140)
Q Consensus 62 ~~r~~~l~~~V~~~~~~~W~~~~l~~l~~~ 91 (140)
......+...+.+.....|...|+..|...
T Consensus 50 ~~aa~~Ll~~L~~~r~~~wf~~Fl~AL~~~ 79 (88)
T cd08812 50 IAAAEELLDRLERCDKPGWFQAFLDALRRT 79 (88)
T ss_pred HHHHHHHHHHHHHhccCCcHHHHHHHHHHc
Confidence 334455667777645688999999999865
No 140
>PF08083 PROCN: PROCN (NUC071) domain; InterPro: IPR012592 The PROCN domain is the central domain in pre-mRNA splicing factors of PRO8 family [].; GO: 0000398 nuclear mRNA splicing, via spliceosome, 0005681 spliceosomal complex
Probab=21.44 E-value=4e+02 Score=23.28 Aligned_cols=67 Identities=13% Similarity=0.262 Sum_probs=38.0
Q ss_pred CCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhHhhCCCCCCCcccccccccHHHHHHHH
Q psy9705 40 PYEIDAAAEVIHRALTMPEDERTLRMNYLRKREKVHDVNYWMRSFLKGMGTLITEDGDDVLPTTMQPVTLEDFDEYLSKY 119 (140)
Q Consensus 40 P~d~~~~A~ai~~AL~m~~~er~~r~~~l~~~V~~~~~~~W~~~~l~~l~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~Y 119 (140)
-+|++-=|+.+++.+.|=|+.-+.-. +..+++.|.++| .+...+.+.....+.. .+..++.+|
T Consensus 287 ~~Dlelr~~vm~di~~m~p~~i~q~k---------------~k~ilqhlsEAW-rcWKAnipw~vpgm~~-pi~~iI~rY 349 (408)
T PF08083_consen 287 HYDLELRAAVMHDILDMMPEGIKQNK---------------AKTILQHLSEAW-RCWKANIPWKVPGMPP-PIENIILRY 349 (408)
T ss_pred cccHHHHHHHHHHHHHhChhhhhHHH---------------HHHHHHHHHHHH-HHhhcCCCeecCCCCh-hHHHHHHHH
Confidence 47899999999999998775322111 234555566655 2322222222211211 557788888
Q ss_pred HccC
Q psy9705 120 IGTH 123 (140)
Q Consensus 120 ~~s~ 123 (140)
-+++
T Consensus 350 vK~K 353 (408)
T PF08083_consen 350 VKAK 353 (408)
T ss_pred HHHh
Confidence 7754
No 141
>PRK07004 replicative DNA helicase; Provisional
Probab=21.25 E-value=2.5e+02 Score=24.53 Aligned_cols=15 Identities=27% Similarity=0.441 Sum_probs=11.9
Q ss_pred HhCCCHHHHHHHHHH
Q psy9705 53 ALTMPEDERTLRMNY 67 (140)
Q Consensus 53 AL~m~~~er~~r~~~ 67 (140)
.|+|+.++-..|.-.
T Consensus 249 SlEM~~~ql~~R~la 263 (460)
T PRK07004 249 SMEMPGTQLAMRMLG 263 (460)
T ss_pred eCCCCHHHHHHHHHH
Confidence 588999998888743
No 142
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=20.96 E-value=71 Score=27.51 Aligned_cols=17 Identities=18% Similarity=0.522 Sum_probs=14.0
Q ss_pred eeCCCCHHHHHHHHHHH
Q psy9705 37 ICNPYEIDAAAEVIHRA 53 (140)
Q Consensus 37 ~VNP~d~~~~A~ai~~A 53 (140)
+-||||.+++-..++.-
T Consensus 79 lrnpwdfeevy~~lhdf 95 (531)
T COG4650 79 LRNPWDFEEVYACLHDF 95 (531)
T ss_pred ecCcccHHHHHHHHHHH
Confidence 44999999999888853
No 143
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=20.88 E-value=2.5e+02 Score=18.48 Aligned_cols=14 Identities=7% Similarity=0.147 Sum_probs=6.3
Q ss_pred CCCCHHHHHHHHHH
Q psy9705 39 NPYEIDAAAEVIHR 52 (140)
Q Consensus 39 NP~d~~~~A~ai~~ 52 (140)
+|.|+.+++..+..
T Consensus 52 ~~~~~~~~~~~~~~ 65 (104)
T cd07313 52 EAPDLYEFTSLIKE 65 (104)
T ss_pred hCCCHHHHHHHHHH
Confidence 34444444444444
No 144
>PF08696 Dna2: DNA replication factor Dna2; InterPro: IPR014808 Dna2 is a DNA replication factor with single-stranded DNA-dependent ATPase, ATP-dependent nuclease, (5'-flap endonuclease) and helicase activities. It is required for Okazaki fragment processing and is involved in DNA repair pathways []. ; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication
Probab=20.56 E-value=2.5e+02 Score=21.79 Aligned_cols=51 Identities=24% Similarity=0.460 Sum_probs=32.8
Q ss_pred hccCceeCCCCHHHHHHHHHHHhC----------CCHHHHHHHHHHHHHHhhcCChhHHHHHHHHH
Q psy9705 32 MHEALICNPYEIDAAAEVIHRALT----------MPEDERTLRMNYLRKREKVHDVNYWMRSFLKG 87 (140)
Q Consensus 32 L~~ai~VNP~d~~~~A~ai~~AL~----------m~~~er~~r~~~l~~~V~~~~~~~W~~~~l~~ 87 (140)
|..|+.-+-|+.+.+.+.++..|. ++.++-+ +.+.+++ .....|++.|+..
T Consensus 101 fQ~~l~~~~~~~~~l~~~~~~~l~~~~~~ly~~~~~~~~~~---~~l~~~~--~~i~~w~~~~~~~ 161 (209)
T PF08696_consen 101 FQKALRTNDFDLEFLEELADRILEKYLEELYALGETEDEAR---EELEEYL--PNIESWAKQYVKK 161 (209)
T ss_pred HHHHHhccCcchHHHHHHHHHHHHHHHHHHHhcCCCHHHHH---HHHHHHH--HHHHHHHHHHccC
Confidence 455677788888888877776655 4544433 3334444 3467888888766
No 145
>COG0233 Frr Ribosome recycling factor [Translation, ribosomal structure and biogenesis]
Probab=20.54 E-value=57 Score=25.50 Aligned_cols=20 Identities=20% Similarity=0.602 Sum_probs=14.8
Q ss_pred CceeCCCCHHHHHHHHHHHhC
Q psy9705 35 ALICNPYEIDAAAEVIHRALT 55 (140)
Q Consensus 35 ai~VNP~d~~~~A~ai~~AL~ 55 (140)
.|.|.||| .....+|.+|+.
T Consensus 66 ~l~I~p~D-ks~~~~IekaI~ 85 (187)
T COG0233 66 TLVIKPFD-KSMVKAIEKAIL 85 (187)
T ss_pred eEEeecCc-cchHHHHHHHHH
Confidence 58999999 556666777654
No 146
>PRK09165 replicative DNA helicase; Provisional
Probab=20.40 E-value=1.8e+02 Score=25.64 Aligned_cols=18 Identities=17% Similarity=0.139 Sum_probs=13.5
Q ss_pred HHHhCCCHHHHHHHHHHH
Q psy9705 51 HRALTMPEDERTLRMNYL 68 (140)
Q Consensus 51 ~~AL~m~~~er~~r~~~l 68 (140)
.-.|+||+++-..|.-..
T Consensus 265 ~fSlEMs~~ql~~R~la~ 282 (497)
T PRK09165 265 FFSLEMSAEQLATRILSE 282 (497)
T ss_pred EEeCcCCHHHHHHHHHHH
Confidence 446899999988886443
No 147
>TIGR00159 conserved hypothetical protein TIGR00159. These proteins have no detectable global or local homology to any protein of known function. Members are restricted to the bacteria and found broadly in lineages other than the Proteobacteria.
Probab=20.37 E-value=1.2e+02 Score=24.10 Aligned_cols=39 Identities=13% Similarity=0.010 Sum_probs=28.0
Q ss_pred CeeEEeCcCcchhhhhccCceeCCCCHHHHHHHHHHHhC
Q psy9705 17 PGVLIVSPFAGAGEQMHEALICNPYEIDAAAEVIHRALT 55 (140)
Q Consensus 17 ~g~LiLSEfaG~a~~L~~ai~VNP~d~~~~A~ai~~AL~ 55 (140)
.=++|+||-+|.-+...+--...+-|.++.-+.+.+.+.
T Consensus 170 ai~ivVSEEtG~ISva~~G~l~~~l~~~~L~~~L~~~l~ 208 (211)
T TIGR00159 170 ALTIIVSEETGSISVAINGVLKRLLSNSDLKEDLEIEYL 208 (211)
T ss_pred CEEEEEEccCCcEEEEECCEEeecCCHHHHHHHHHHHhc
Confidence 348999999998887766566666777776666655443
Done!