Query psy9705
Match_columns 140
No_of_seqs 133 out of 1036
Neff 6.4
Searched_HMMs 29240
Date Fri Aug 16 17:32:57 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9705.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9705hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3t5t_A Putative glycosyltransf 99.9 1.2E-23 4E-28 181.5 8.4 93 1-95 384-477 (496)
2 1uqt_A Alpha, alpha-trehalose- 99.8 2.4E-19 8.3E-24 153.4 8.2 91 1-91 364-454 (482)
3 3fro_A GLGA glycogen synthase; 97.5 8.2E-05 2.8E-09 59.4 3.9 85 3-92 345-431 (439)
4 3c48_A Predicted glycosyltrans 97.2 0.00054 1.8E-08 55.1 6.3 86 3-94 340-428 (438)
5 2bfw_A GLGA glycogen synthase; 97.2 0.00035 1.2E-08 50.5 4.5 67 3-74 130-198 (200)
6 2r60_A Glycosyl transferase, g 97.2 0.0012 4.1E-08 54.5 8.2 85 3-93 373-461 (499)
7 2jjm_A Glycosyl transferase, g 97.0 0.0012 3.9E-08 52.7 6.4 84 3-92 299-386 (394)
8 2iw1_A Lipopolysaccharide core 96.9 0.001 3.5E-08 52.1 4.8 81 4-90 286-370 (374)
9 3okp_A GDP-mannose-dependent a 96.9 0.0025 8.6E-08 50.0 7.0 82 4-91 295-379 (394)
10 2gek_A Phosphatidylinositol ma 96.9 0.0026 8.9E-08 50.3 7.0 84 3-92 298-384 (406)
11 3oy2_A Glycosyltransferase B73 96.7 0.0022 7.4E-08 51.3 5.7 83 3-92 288-391 (413)
12 3qhp_A Type 1 capsular polysac 96.6 0.003 1E-07 44.2 4.9 62 19-81 101-164 (166)
13 3s28_A Sucrose synthase 1; gly 95.8 0.013 4.5E-07 53.0 6.0 83 3-90 679-768 (816)
14 2qzs_A Glycogen synthase; glyc 95.6 0.028 9.4E-07 45.9 6.7 83 3-92 381-477 (485)
15 2iuy_A Avigt4, glycosyltransfe 95.4 0.014 4.7E-07 45.4 4.2 74 4-92 257-336 (342)
16 1rzu_A Glycogen synthase 1; gl 95.4 0.033 1.1E-06 45.4 6.7 82 3-91 380-475 (485)
17 2x6q_A Trehalose-synthase TRET 95.4 0.021 7.3E-07 45.5 5.4 80 3-90 330-413 (416)
18 2f9f_A First mannosyl transfer 93.2 0.028 9.5E-07 40.2 1.3 50 3-58 112-164 (177)
19 3l7y_A Putative uncharacterize 92.3 0.047 1.6E-06 42.4 1.6 14 127-140 38-51 (304)
20 3ij5_A 3-deoxy-D-manno-octulos 91.6 0.063 2.2E-06 40.4 1.5 14 127-140 50-63 (211)
21 1vgv_A UDP-N-acetylglucosamine 91.5 0.16 5.3E-06 39.8 3.8 71 5-82 294-367 (384)
22 3nuq_A Protein SSM1, putative 91.4 0.084 2.9E-06 39.9 2.1 13 127-139 58-70 (282)
23 1f0k_A MURG, UDP-N-acetylgluco 91.3 0.13 4.4E-06 40.0 3.1 79 5-91 267-357 (364)
24 2qlt_A (DL)-glycerol-3-phospha 89.7 0.093 3.2E-06 39.8 0.9 12 128-139 37-48 (275)
25 2b82_A APHA, class B acid phos 88.8 0.24 8.2E-06 36.8 2.7 13 127-139 38-50 (211)
26 2vsy_A XCC0866; transferase, g 88.1 0.98 3.3E-05 37.4 6.2 51 42-93 508-561 (568)
27 4eze_A Haloacid dehalogenase-l 87.7 0.22 7.7E-06 39.6 2.0 13 127-139 109-121 (317)
28 3nb0_A Glycogen [starch] synth 87.5 1.1 3.7E-05 40.3 6.4 78 4-86 534-628 (725)
29 3nvb_A Uncharacterized protein 86.4 0.44 1.5E-05 39.6 3.1 27 111-139 209-235 (387)
30 3p96_A Phosphoserine phosphata 85.1 0.38 1.3E-05 39.1 2.1 13 127-139 186-198 (415)
31 2i33_A Acid phosphatase; HAD s 84.6 0.3 1E-05 37.8 1.2 14 126-139 59-72 (258)
32 3beo_A UDP-N-acetylglucosamine 83.7 0.55 1.9E-05 36.4 2.4 67 6-79 295-364 (375)
33 3vue_A GBSS-I, granule-bound s 80.6 0.33 1.1E-05 41.4 0.0 49 3-56 416-477 (536)
34 3rhz_A GTF3, nucleotide sugar 79.7 2.2 7.4E-05 34.3 4.6 72 6-87 258-332 (339)
35 2hy7_A Glucuronosyltransferase 73.5 1.6 5.4E-05 35.2 2.2 60 6-85 309-371 (406)
36 3zvl_A Bifunctional polynucleo 72.8 1.4 4.7E-05 36.2 1.7 12 127-138 59-70 (416)
37 4fe3_A Cytosolic 5'-nucleotida 66.1 2.1 7.3E-05 32.9 1.4 26 113-139 30-56 (297)
38 2x0d_A WSAF; GT4 family, trans 65.1 3.2 0.00011 33.8 2.3 48 3-56 329-379 (413)
39 3n28_A Phosphoserine phosphata 62.0 2.6 8.9E-05 32.9 1.2 15 123-139 106-120 (335)
40 3ocu_A Lipoprotein E; hydrolas 61.9 1.9 6.6E-05 33.9 0.4 13 127-139 59-71 (262)
41 3pct_A Class C acid phosphatas 58.2 3 0.0001 32.7 0.9 12 128-139 60-71 (260)
42 1wih_A Mitochondrial ribosome 57.3 3.9 0.00013 26.9 1.2 38 18-55 18-55 (84)
43 4gxt_A A conserved functionall 55.7 2.9 9.8E-05 34.3 0.4 16 121-138 37-52 (385)
44 1v4v_A UDP-N-acetylglucosamine 52.8 15 0.00052 28.2 4.2 42 19-62 295-339 (376)
45 1eh1_A Ribosome recycling fact 52.7 9 0.00031 28.6 2.7 39 18-57 48-86 (185)
46 3shq_A UBLCP1; phosphatase, hy 51.9 5.7 0.00019 31.9 1.6 13 127-139 141-153 (320)
47 2xci_A KDO-transferase, 3-deox 47.7 5.3 0.00018 31.8 0.8 52 19-72 304-360 (374)
48 3otg_A CALG1; calicheamicin, T 42.8 45 0.0016 25.7 5.6 55 27-82 342-401 (412)
49 3qle_A TIM50P; chaperone, mito 41.7 9.8 0.00033 28.5 1.4 12 127-138 35-46 (204)
50 1fex_A TRF2-interacting telome 35.9 25 0.00086 21.1 2.4 51 39-89 3-58 (59)
51 2iyf_A OLED, oleandomycin glyc 35.2 1E+02 0.0036 23.9 6.7 48 35-84 344-394 (430)
52 1ise_A Ribosome recycling fact 33.7 9.2 0.00031 28.6 0.1 36 18-53 47-85 (185)
53 3ot5_A UDP-N-acetylglucosamine 33.3 59 0.002 26.0 4.9 37 19-56 322-361 (403)
54 1dd5_A Ribosome recycling fact 32.6 8.5 0.00029 28.8 -0.2 36 18-53 47-85 (185)
55 1j2m_A CPI-17, 17-kDa PKC-pote 32.3 28 0.00096 23.5 2.4 39 50-89 56-95 (99)
56 1ge9_A Ribosome recycling fact 31.2 23 0.00078 26.4 1.9 37 18-54 50-89 (184)
57 3tsa_A SPNG, NDP-rhamnosyltran 30.5 1.8E+02 0.0061 22.2 7.2 24 35-58 331-358 (391)
58 1wqg_A Ribosome recycling fact 26.2 11 0.00038 28.1 -0.6 36 18-53 47-85 (185)
59 1is1_A Ribosome recycling fact 25.4 24 0.00081 26.3 1.1 36 18-53 47-85 (185)
60 3gs3_A Symplekin, LD45768P; he 24.4 1.9E+02 0.0064 22.2 6.2 47 43-90 14-60 (257)
61 3dzc_A UDP-N-acetylglucosamine 24.4 71 0.0024 25.4 3.9 36 19-55 328-366 (396)
62 2xse_A Thymine dioxygenase JBP 24.1 51 0.0017 23.9 2.6 15 55-69 145-159 (170)
63 2jc9_A Cytosolic purine 5'-nuc 24.0 27 0.00092 30.4 1.4 13 126-138 65-77 (555)
64 2lwd_A Probable ATP-dependent 21.9 1.4E+02 0.0047 19.8 4.3 51 39-91 38-88 (100)
65 1upt_B Golgi autoantigen, golg 21.7 1.5E+02 0.005 18.1 4.1 26 42-67 22-47 (60)
66 4ehi_A Bifunctional purine bio 21.1 73 0.0025 27.6 3.4 48 35-83 163-212 (534)
67 3zzm_A Bifunctional purine bio 20.6 76 0.0026 27.4 3.4 42 35-77 149-190 (523)
68 2bsj_A Chaperone protein SYCT; 20.6 84 0.0029 21.8 3.1 18 77-94 100-117 (133)
No 1
>3t5t_A Putative glycosyltransferase; GTB fold, pseudoglycosyltransferase; 1.70A {Streptomyces hygroscopicus} PDB: 4f97_A* 4f96_B* 4f9f_A* 3t7d_A*
Probab=99.89 E-value=1.2e-23 Score=181.47 Aligned_cols=93 Identities=22% Similarity=0.259 Sum_probs=87.5
Q ss_pred CCCcceeeeecccCCCCeeEEeCcCcchhhhhc-cCceeCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCChhH
Q psy9705 1 MNLVAKEFVACQINEPPGVLIVSPFAGAGEQMH-EALICNPYEIDAAAEVIHRALTMPEDERTLRMNYLRKREKVHDVNY 79 (140)
Q Consensus 1 MNLva~Eyv~~q~~~~~g~LiLSEfaG~a~~L~-~ai~VNP~d~~~~A~ai~~AL~m~~~er~~r~~~l~~~V~~~~~~~ 79 (140)
||||++||++|+. + +|+||+|||+|+++.|+ ++++|||||++++|+||.+||+||++||++|+++++++|.+||+.+
T Consensus 384 fgLv~~EamA~~~-~-~g~lVlSe~aGa~~~l~~~allVnP~D~~~lA~AI~~aL~m~~~er~~r~~~~~~~V~~~d~~~ 461 (496)
T 3t5t_A 384 QNLSTFEAPLVNE-R-DADVILSETCGAAEVLGEYCRSVNPFDLVEQAEAISAALAAGPRQRAEAAARRRDAARPWTLEA 461 (496)
T ss_dssp CCSHHHHHHHHCS-S-CCEEEEETTBTTHHHHGGGSEEECTTBHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCBHHH
T ss_pred CChhHHHHHHhCC-C-CCCEEEeCCCCCHHHhCCCEEEECCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCHHH
Confidence 8999999999963 3 79999999999999996 6999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhHhh
Q psy9705 80 WMRSFLKGMGTLITED 95 (140)
Q Consensus 80 W~~~~l~~l~~~~~~~ 95 (140)
|+++|+.+|..++...
T Consensus 462 W~~~fl~~L~~~~~~~ 477 (496)
T 3t5t_A 462 WVQAQLDGLAADHAAR 477 (496)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhhcccch
Confidence 9999999999886443
No 2
>1uqt_A Alpha, alpha-trehalose-phosphate synthase; glycosyltransferase, transferase; HET: U2F; 2.0A {Escherichia coli} SCOP: c.87.1.6 PDB: 1uqu_A* 2wtx_A* 1gz5_A*
Probab=99.78 E-value=2.4e-19 Score=153.35 Aligned_cols=91 Identities=43% Similarity=0.657 Sum_probs=86.7
Q ss_pred CCCcceeeeecccCCCCeeEEeCcCcchhhhhccCceeCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCChhHH
Q psy9705 1 MNLVAKEFVACQINEPPGVLIVSPFAGAGEQMHEALICNPYEIDAAAEVIHRALTMPEDERTLRMNYLRKREKVHDVNYW 80 (140)
Q Consensus 1 MNLva~Eyv~~q~~~~~g~LiLSEfaG~a~~L~~ai~VNP~d~~~~A~ai~~AL~m~~~er~~r~~~l~~~V~~~~~~~W 80 (140)
||||++||++|+.++.+|++|+|+|+|+++.+.++++|||||++++|++|.++|+|+++||++|+++++++|.++|...|
T Consensus 364 fgLv~lEAmA~g~~~~~gpvV~S~~~G~~~~l~~g~lv~p~d~~~lA~ai~~lL~~~~~~r~~~~~~~~~~v~~~s~~~~ 443 (482)
T 1uqt_A 364 MNLVAKEYVAAQDPANPGVLVLSQFAGAANELTSALIVNPYDRDEVAAALDRALTMSLAERISRHAEMLDVIVKNDINHW 443 (482)
T ss_dssp CCHHHHHHHHHSCTTSCCEEEEETTBGGGGTCTTSEEECTTCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred CCchHHHHHHhCCCCCCCCEEEECCCCCHHHhCCeEEECCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCHHHH
Confidence 89999999999864447999999999999999889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh
Q psy9705 81 MRSFLKGMGTL 91 (140)
Q Consensus 81 ~~~~l~~l~~~ 91 (140)
+++|+..+.++
T Consensus 444 a~~~l~~l~~~ 454 (482)
T 1uqt_A 444 QECFISDLKQI 454 (482)
T ss_dssp HHHHHHHHHHS
T ss_pred HHHHHHHHHhc
Confidence 99999999877
No 3
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*
Probab=97.46 E-value=8.2e-05 Score=59.38 Aligned_cols=85 Identities=18% Similarity=0.193 Sum_probs=71.5
Q ss_pred CcceeeeecccCCCCeeEEeCcCcchhhhhc--cCceeCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCChhHH
Q psy9705 3 LVAKEFVACQINEPPGVLIVSPFAGAGEQMH--EALICNPYEIDAAAEVIHRALTMPEDERTLRMNYLRKREKVHDVNYW 80 (140)
Q Consensus 3 Lva~Eyv~~q~~~~~g~LiLSEfaG~a~~L~--~ai~VNP~d~~~~A~ai~~AL~m~~~er~~r~~~l~~~V~~~~~~~W 80 (140)
++..|+++| .-++|.|...|..+.+. ..+.++|.|.+++|++|.+.+.|.++++.+..+...+++..++...+
T Consensus 345 ~~~~EAma~-----G~Pvi~s~~~~~~e~~~~~~g~~~~~~d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~~~s~~~~ 419 (439)
T 3fro_A 345 LVALEAMCL-----GAIPIASAVGGLRDIITNETGILVKAGDPGELANAILKALELSRSDLSKFRENCKKRAMSFSWEKS 419 (439)
T ss_dssp HHHHHHHHT-----TCEEEEESSTHHHHHCCTTTCEEECTTCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHC-----CCCeEEcCCCCcceeEEcCceEEeCCCCHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCcHHHH
Confidence 445677666 34788899888888883 48999999999999999999998888888888888888999999999
Q ss_pred HHHHHHHHHHhh
Q psy9705 81 MRSFLKGMGTLI 92 (140)
Q Consensus 81 ~~~~l~~l~~~~ 92 (140)
++.+++-+.++.
T Consensus 420 ~~~~~~~~~~~~ 431 (439)
T 3fro_A 420 AERYVKAYTGSI 431 (439)
T ss_dssp HHHHHHHHHTCS
T ss_pred HHHHHHHHHHHH
Confidence 999988887763
No 4
>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate AS catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A*
Probab=97.23 E-value=0.00054 Score=55.14 Aligned_cols=86 Identities=16% Similarity=0.088 Sum_probs=67.3
Q ss_pred CcceeeeecccCCCCeeEEeCcCcchhhhhcc---CceeCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCChhH
Q psy9705 3 LVAKEFVACQINEPPGVLIVSPFAGAGEQMHE---ALICNPYEIDAAAEVIHRALTMPEDERTLRMNYLRKREKVHDVNY 79 (140)
Q Consensus 3 Lva~Eyv~~q~~~~~g~LiLSEfaG~a~~L~~---ai~VNP~d~~~~A~ai~~AL~m~~~er~~r~~~l~~~V~~~~~~~ 79 (140)
++..|+++| .-++|.|...|..+.+.+ .+.++|.|.+++|++|.+.++ .++.+.+..+..++++..++...
T Consensus 340 ~~~~Eama~-----G~PvI~~~~~~~~e~i~~~~~g~~~~~~d~~~la~~i~~l~~-~~~~~~~~~~~~~~~~~~~s~~~ 413 (438)
T 3c48_A 340 LVAMEAQAS-----GTPVIAARVGGLPIAVAEGETGLLVDGHSPHAWADALATLLD-DDETRIRMGEDAVEHARTFSWAA 413 (438)
T ss_dssp HHHHHHHHT-----TCCEEEESCTTHHHHSCBTTTEEEESSCCHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHc-----CCCEEecCCCChhHHhhCCCcEEECCCCCHHHHHHHHHHHHc-CHHHHHHHHHHHHHHHHhCCHHH
Confidence 345666666 247888998888888842 689999999999999999998 56667666677778887788888
Q ss_pred HHHHHHHHHHHhhHh
Q psy9705 80 WMRSFLKGMGTLITE 94 (140)
Q Consensus 80 W~~~~l~~l~~~~~~ 94 (140)
.++.++.-+.++...
T Consensus 414 ~~~~~~~~~~~~~~~ 428 (438)
T 3c48_A 414 TAAQLSSLYNDAIAN 428 (438)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhh
Confidence 888888888776433
No 5
>2bfw_A GLGA glycogen synthase; glycosyltransferase family 5 UDP/ADP-glucose-glycogen syntha rossman folds, transferase; 1.8A {Pyrococcus abyssi} SCOP: c.87.1.8
Probab=97.20 E-value=0.00035 Score=50.52 Aligned_cols=67 Identities=19% Similarity=0.237 Sum_probs=53.8
Q ss_pred CcceeeeecccCCCCeeEEeCcCcchhhhh-c-cCceeCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhc
Q psy9705 3 LVAKEFVACQINEPPGVLIVSPFAGAGEQM-H-EALICNPYEIDAAAEVIHRALTMPEDERTLRMNYLRKREKV 74 (140)
Q Consensus 3 Lva~Eyv~~q~~~~~g~LiLSEfaG~a~~L-~-~ai~VNP~d~~~~A~ai~~AL~m~~~er~~r~~~l~~~V~~ 74 (140)
++..|+++| .-++|.|...|..+.+ + ..+.++|.|.++++++|.+.++|.++++.+..+..++++..
T Consensus 130 ~~~~Ea~a~-----G~PvI~~~~~~~~e~~~~~~g~~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~a~~~~~~ 198 (200)
T 2bfw_A 130 LVALEAMCL-----GAIPIASAVGGLRDIITNETGILVKAGDPGELANAILKALELSRSDLSKFRENCKKRAMS 198 (200)
T ss_dssp HHHHHHHHT-----TCEEEEESCHHHHHHCCTTTCEEECTTCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHC-----CCCEEEeCCCChHHHcCCCceEEecCCCHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence 345676666 3478999988888888 3 37899999999999999999999998888777777776654
No 6
>2r60_A Glycosyl transferase, group 1; rossmann-fold; 1.80A {Halothermothrix orenii} PDB: 2r66_A* 2r68_A*
Probab=97.20 E-value=0.0012 Score=54.51 Aligned_cols=85 Identities=15% Similarity=0.175 Sum_probs=68.6
Q ss_pred CcceeeeecccCCCCeeEEeCcCcchhhhhcc---CceeCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhc-CChh
Q psy9705 3 LVAKEFVACQINEPPGVLIVSPFAGAGEQMHE---ALICNPYEIDAAAEVIHRALTMPEDERTLRMNYLRKREKV-HDVN 78 (140)
Q Consensus 3 Lva~Eyv~~q~~~~~g~LiLSEfaG~a~~L~~---ai~VNP~d~~~~A~ai~~AL~m~~~er~~r~~~l~~~V~~-~~~~ 78 (140)
++..|+++| .-++|.|...|..+.+.+ .+.++|.|.+++|++|...++ .++.+.+..+..++++.. ++..
T Consensus 373 ~~~lEAma~-----G~PvI~s~~~g~~e~v~~~~~g~l~~~~d~~~la~~i~~ll~-~~~~~~~~~~~a~~~~~~~fs~~ 446 (499)
T 2r60_A 373 LAPVEAMAS-----GLPAVVTRNGGPAEILDGGKYGVLVDPEDPEDIARGLLKAFE-SEETWSAYQEKGKQRVEERYTWQ 446 (499)
T ss_dssp SHHHHHHHT-----TCCEEEESSBHHHHHTGGGTSSEEECTTCHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHHSBHH
T ss_pred cHHHHHHHc-----CCCEEEecCCCHHHHhcCCceEEEeCCCCHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHhCCHH
Confidence 456677666 347899998888888853 799999999999999999998 666777777777788877 8999
Q ss_pred HHHHHHHHHHHHhhH
Q psy9705 79 YWMRSFLKGMGTLIT 93 (140)
Q Consensus 79 ~W~~~~l~~l~~~~~ 93 (140)
..++.++.-+.+...
T Consensus 447 ~~~~~~~~~y~~~~~ 461 (499)
T 2r60_A 447 ETARGYLEVIQEIAD 461 (499)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 999998888877643
No 7
>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A*
Probab=97.03 E-value=0.0012 Score=52.66 Aligned_cols=84 Identities=15% Similarity=0.137 Sum_probs=67.3
Q ss_pred CcceeeeecccCCCCeeEEeCcCcchhhhhc---cCceeCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh-hcCChh
Q psy9705 3 LVAKEFVACQINEPPGVLIVSPFAGAGEQMH---EALICNPYEIDAAAEVIHRALTMPEDERTLRMNYLRKRE-KVHDVN 78 (140)
Q Consensus 3 Lva~Eyv~~q~~~~~g~LiLSEfaG~a~~L~---~ai~VNP~d~~~~A~ai~~AL~m~~~er~~r~~~l~~~V-~~~~~~ 78 (140)
++..|+++| .-++|.|...|..+.+. ..+.++|.|.+++|++|...+. .++++.+..+..++++ ..++..
T Consensus 299 ~~~~EAma~-----G~PvI~~~~~~~~e~v~~~~~g~~~~~~d~~~la~~i~~l~~-~~~~~~~~~~~~~~~~~~~~s~~ 372 (394)
T 2jjm_A 299 LVLLEAMAC-----GVPCIGTRVGGIPEVIQHGDTGYLCEVGDTTGVADQAIQLLK-DEELHRNMGERARESVYEQFRSE 372 (394)
T ss_dssp HHHHHHHHT-----TCCEEEECCTTSTTTCCBTTTEEEECTTCHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHSCHH
T ss_pred hHHHHHHhc-----CCCEEEecCCChHHHhhcCCceEEeCCCCHHHHHHHHHHHHc-CHHHHHHHHHHHHHHHHHhCCHH
Confidence 345666666 24788899888888873 3789999999999999999998 5667777677777888 889999
Q ss_pred HHHHHHHHHHHHhh
Q psy9705 79 YWMRSFLKGMGTLI 92 (140)
Q Consensus 79 ~W~~~~l~~l~~~~ 92 (140)
..++.++.-+.+..
T Consensus 373 ~~~~~~~~~~~~~~ 386 (394)
T 2jjm_A 373 KIVSQYETIYYDVL 386 (394)
T ss_dssp HHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHH
Confidence 99998888887763
No 8
>2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase, lipopolysaccharide biosynthesis, family GT-4, glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia coli} SCOP: c.87.1.8 PDB: 2iv7_A*
Probab=96.90 E-value=0.001 Score=52.07 Aligned_cols=81 Identities=15% Similarity=0.150 Sum_probs=65.1
Q ss_pred cceeeeecccCCCCeeEEeCcCcchhhhhc---cCceeC-CCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCChhH
Q psy9705 4 VAKEFVACQINEPPGVLIVSPFAGAGEQMH---EALICN-PYEIDAAAEVIHRALTMPEDERTLRMNYLRKREKVHDVNY 79 (140)
Q Consensus 4 va~Eyv~~q~~~~~g~LiLSEfaG~a~~L~---~ai~VN-P~d~~~~A~ai~~AL~m~~~er~~r~~~l~~~V~~~~~~~ 79 (140)
+..|+++| .-++|.|...|..+.+. ..+.++ |.|.++++++|.+.++ .++++.+..+..++++..++...
T Consensus 286 ~~~Ea~a~-----G~Pvi~~~~~~~~e~i~~~~~g~~~~~~~~~~~l~~~i~~l~~-~~~~~~~~~~~~~~~~~~~~~~~ 359 (374)
T 2iw1_A 286 VLLEAITA-----GLPVLTTAVCGYAHYIADANCGTVIAEPFSQEQLNEVLRKALT-QSPLRMAWAENARHYADTQDLYS 359 (374)
T ss_dssp HHHHHHHH-----TCCEEEETTSTTTHHHHHHTCEEEECSSCCHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHSCCSC
T ss_pred HHHHHHHC-----CCCEEEecCCCchhhhccCCceEEeCCCCCHHHHHHHHHHHHc-ChHHHHHHHHHHHHHHHHhhHHH
Confidence 45566665 24788899989888874 367887 9999999999999998 67777777788888899988888
Q ss_pred HHHHHHHHHHH
Q psy9705 80 WMRSFLKGMGT 90 (140)
Q Consensus 80 W~~~~l~~l~~ 90 (140)
|++.+.+-+..
T Consensus 360 ~~~~~~~~l~~ 370 (374)
T 2iw1_A 360 LPEKAADIITG 370 (374)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHHH
Confidence 99888777654
No 9
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A*
Probab=96.88 E-value=0.0025 Score=50.02 Aligned_cols=82 Identities=17% Similarity=0.119 Sum_probs=66.0
Q ss_pred cceeeeecccCCCCeeEEeCcCcchhhhhc--cCceeCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhc-CChhHH
Q psy9705 4 VAKEFVACQINEPPGVLIVSPFAGAGEQMH--EALICNPYEIDAAAEVIHRALTMPEDERTLRMNYLRKREKV-HDVNYW 80 (140)
Q Consensus 4 va~Eyv~~q~~~~~g~LiLSEfaG~a~~L~--~ai~VNP~d~~~~A~ai~~AL~m~~~er~~r~~~l~~~V~~-~~~~~W 80 (140)
+..|+++| .-++|.|...|..+.+. ..+.++|.|.++++++|.+.+. .++++.+..+..++++.. ++...+
T Consensus 295 ~~~Ea~a~-----G~PvI~~~~~~~~e~i~~~~g~~~~~~d~~~l~~~i~~l~~-~~~~~~~~~~~~~~~~~~~~s~~~~ 368 (394)
T 3okp_A 295 VYLEAQAC-----GVPVIAGTSGGAPETVTPATGLVVEGSDVDKLSELLIELLD-DPIRRAAMGAAGRAHVEAEWSWEIM 368 (394)
T ss_dssp HHHHHHHT-----TCCEEECSSTTGGGGCCTTTEEECCTTCHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHTBHHHH
T ss_pred HHHHHHHc-----CCCEEEeCCCChHHHHhcCCceEeCCCCHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 44566555 24788899988888875 3789999999999999999999 677777777777787765 799999
Q ss_pred HHHHHHHHHHh
Q psy9705 81 MRSFLKGMGTL 91 (140)
Q Consensus 81 ~~~~l~~l~~~ 91 (140)
++.+++-+.+.
T Consensus 369 ~~~~~~~~~~~ 379 (394)
T 3okp_A 369 GERLTNILQSE 379 (394)
T ss_dssp HHHHHHHHHSC
T ss_pred HHHHHHHHHHh
Confidence 99998888765
No 10
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A*
Probab=96.85 E-value=0.0026 Score=50.25 Aligned_cols=84 Identities=13% Similarity=0.081 Sum_probs=67.4
Q ss_pred CcceeeeecccCCCCeeEEeCcCcchhhhhc---cCceeCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCChhH
Q psy9705 3 LVAKEFVACQINEPPGVLIVSPFAGAGEQMH---EALICNPYEIDAAAEVIHRALTMPEDERTLRMNYLRKREKVHDVNY 79 (140)
Q Consensus 3 Lva~Eyv~~q~~~~~g~LiLSEfaG~a~~L~---~ai~VNP~d~~~~A~ai~~AL~m~~~er~~r~~~l~~~V~~~~~~~ 79 (140)
++..|+++| .-++|.|...|..+.+. ..+.++|.|.++++++|.+.+. .++++.+..+..++++..++...
T Consensus 298 ~~~~Ea~a~-----G~PvI~~~~~~~~e~i~~~~~g~~~~~~d~~~l~~~i~~l~~-~~~~~~~~~~~~~~~~~~~s~~~ 371 (406)
T 2gek_A 298 IVLVEAMAA-----GTAVVASDLDAFRRVLADGDAGRLVPVDDADGMAAALIGILE-DDQLRAGYVARASERVHRYDWSV 371 (406)
T ss_dssp HHHHHHHHH-----TCEEEECCCHHHHHHHTTTTSSEECCTTCHHHHHHHHHHHHH-CHHHHHHHHHHHHHHGGGGBHHH
T ss_pred hHHHHHHHc-----CCCEEEecCCcHHHHhcCCCceEEeCCCCHHHHHHHHHHHHc-CHHHHHHHHHHHHHHHHhCCHHH
Confidence 345666655 24789999988888885 3789999999999999999998 56667776777788888889999
Q ss_pred HHHHHHHHHHHhh
Q psy9705 80 WMRSFLKGMGTLI 92 (140)
Q Consensus 80 W~~~~l~~l~~~~ 92 (140)
.++.++.-+.+..
T Consensus 372 ~~~~~~~~~~~~~ 384 (406)
T 2gek_A 372 VSAQIMRVYETVS 384 (406)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHH
Confidence 9998888887764
No 11
>3oy2_A Glycosyltransferase B736L; rossmann fold, GDP-mannose, sugar, VIRU proteins, viral protein,transferase; 2.31A {Paramecium bursaria chlorella virus NY} PDB: 3oy7_A*
Probab=96.73 E-value=0.0022 Score=51.28 Aligned_cols=83 Identities=16% Similarity=0.148 Sum_probs=65.9
Q ss_pred CcceeeeecccCCCCeeEEeCcCcchhhhhcc------------------Cc--eeCCCCHHHHHHHHHHHhCCCHHHHH
Q psy9705 3 LVAKEFVACQINEPPGVLIVSPFAGAGEQMHE------------------AL--ICNPYEIDAAAEVIHRALTMPEDERT 62 (140)
Q Consensus 3 Lva~Eyv~~q~~~~~g~LiLSEfaG~a~~L~~------------------ai--~VNP~d~~~~A~ai~~AL~m~~~er~ 62 (140)
++..|+++| .-|+|.|...|..+.+.+ .+ .+.|.|.+++|++| +.+. .++++.
T Consensus 288 ~~~lEAma~-----G~PvI~s~~~g~~e~v~~~~~~~i~~~~~~~~~~~~G~~gl~~~~d~~~la~~i-~l~~-~~~~~~ 360 (413)
T 3oy2_A 288 LCSAEGAVL-----GKPLIISAVGGADDYFSGDCVYKIKPSAWISVDDRDGIGGIEGIIDVDDLVEAF-TFFK-DEKNRK 360 (413)
T ss_dssp HHHHHHHTT-----TCCEEEECCHHHHHHSCTTTSEEECCCEEEECTTTCSSCCEEEECCHHHHHHHH-HHTT-SHHHHH
T ss_pred cHHHHHHHc-----CCCEEEcCCCChHHHHccCcccccccccccccccccCcceeeCCCCHHHHHHHH-HHhc-CHHHHH
Confidence 345666655 247888998888888853 45 89999999999999 8887 777877
Q ss_pred HHHHHHHHHh-hcCChhHHHHHHHHHHHHhh
Q psy9705 63 LRMNYLRKRE-KVHDVNYWMRSFLKGMGTLI 92 (140)
Q Consensus 63 ~r~~~l~~~V-~~~~~~~W~~~~l~~l~~~~ 92 (140)
+..+..++++ ..++...+++.+++-+.+..
T Consensus 361 ~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~~ 391 (413)
T 3oy2_A 361 EYGKRVQDFVKTKPTWDDISSDIIDFFNSLL 391 (413)
T ss_dssp HHHHHHHHHHTTSCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 7777888887 46799999999998888774
No 12
>3qhp_A Type 1 capsular polysaccharide biosynthesis prote (CAPJ); rossmann fold, glycosyltransferase, transferase; 1.50A {Helicobacter pylori}
Probab=96.58 E-value=0.003 Score=44.25 Aligned_cols=62 Identities=18% Similarity=0.117 Sum_probs=42.8
Q ss_pred eEEe-CcCcchhhhhc-cCceeCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCChhHHH
Q psy9705 19 VLIV-SPFAGAGEQMH-EALICNPYEIDAAAEVIHRALTMPEDERTLRMNYLRKREKVHDVNYWM 81 (140)
Q Consensus 19 ~LiL-SEfaG~a~~L~-~ai~VNP~d~~~~A~ai~~AL~m~~~er~~r~~~l~~~V~~~~~~~W~ 81 (140)
|+|. +...|..+.+. +...+.|.|.++++++|.+.+. .++.+.+..+..++++.+++...++
T Consensus 101 Pvi~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~l~~-~~~~~~~~~~~~~~~~~~~s~~~~~ 164 (166)
T 3qhp_A 101 PVIANSPLSATRQFALDERSLFEPNNAKDLSAKIDWWLE-NKLERERMQNEYAKSALNYTLENSV 164 (166)
T ss_dssp EEEECCTTCGGGGGCSSGGGEECTTCHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHC-----
T ss_pred cEEeeCCCCchhhhccCCceEEcCCCHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHCChhhhh
Confidence 5666 44555555554 4669999999999999999998 6777777767777777666655444
No 13
>3s28_A Sucrose synthase 1; glycosyltransferase, sucrose metabolism, sugar donar complex rossmann fold, GT-B fold, glycosyltansferase, UDP-glucose; HET: UDP LCN NHF; 2.80A {Arabidopsis thaliana} PDB: 3s27_A* 3s29_A*
Probab=95.78 E-value=0.013 Score=53.05 Aligned_cols=83 Identities=17% Similarity=0.135 Sum_probs=65.8
Q ss_pred CcceeeeecccCCCCeeEEeCcCcchhhhhc---cCceeCCCCHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHh-hcC
Q psy9705 3 LVAKEFVACQINEPPGVLIVSPFAGAGEQMH---EALICNPYEIDAAAEVIHRALT---MPEDERTLRMNYLRKRE-KVH 75 (140)
Q Consensus 3 Lva~Eyv~~q~~~~~g~LiLSEfaG~a~~L~---~ai~VNP~d~~~~A~ai~~AL~---m~~~er~~r~~~l~~~V-~~~ 75 (140)
++..|+.+| .-++|.|...|..+.+. ..+.|+|.|.+++|++|.+++. ..++.+.+..+..++++ ..+
T Consensus 679 lvllEAMA~-----G~PVIasd~GG~~EiV~dg~~Gllv~p~D~e~LA~aI~~lL~~Ll~d~~~~~~m~~~ar~~a~~~f 753 (816)
T 3s28_A 679 LTVVEAMTC-----GLPTFATCKGGPAEIIVHGKSGFHIDPYHGDQAADTLADFFTKCKEDPSHWDEISKGGLQRIEEKY 753 (816)
T ss_dssp HHHHHHHHT-----TCCEEEESSBTHHHHCCBTTTBEEECTTSHHHHHHHHHHHHHHHHHCTHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHc-----CCCEEEeCCCChHHHHccCCcEEEeCCCCHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhC
Confidence 455666665 34788899999998883 3799999999999999998874 56777777777888888 788
Q ss_pred ChhHHHHHHHHHHHH
Q psy9705 76 DVNYWMRSFLKGMGT 90 (140)
Q Consensus 76 ~~~~W~~~~l~~l~~ 90 (140)
+...++++++.-...
T Consensus 754 Swe~~a~~ll~lY~~ 768 (816)
T 3s28_A 754 TWQIYSQRLLTLTGV 768 (816)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999988875544
No 14
>2qzs_A Glycogen synthase; glycosyl-transferase, GT-B fold, rossmann fold, closed-form, ADP and glucose binding, glycogen biosynthesis; HET: GLC ADP 250; 2.20A {Escherichia coli} PDB: 2r4t_A* 2r4u_A* 3guh_A* 3cx4_A* 3cop_A* 3d1j_A
Probab=95.57 E-value=0.028 Score=45.90 Aligned_cols=83 Identities=10% Similarity=-0.019 Sum_probs=59.4
Q ss_pred CcceeeeecccCCCCeeEEeCcCcchhhhhc------------cCceeCCCCHHHHHHHHHHHhC--CCHHHHHHHHHHH
Q psy9705 3 LVAKEFVACQINEPPGVLIVSPFAGAGEQMH------------EALICNPYEIDAAAEVIHRALT--MPEDERTLRMNYL 68 (140)
Q Consensus 3 Lva~Eyv~~q~~~~~g~LiLSEfaG~a~~L~------------~ai~VNP~d~~~~A~ai~~AL~--m~~~er~~r~~~l 68 (140)
++..|+.+| .-++|.|...|..+.+. ..++++|.|.+++|++|.+++. ..++.+.+..+..
T Consensus 381 ~~~lEAma~-----G~PvI~s~~gg~~e~v~~~~~~~~~~~~~~G~l~~~~d~~~la~~i~~ll~~~~~~~~~~~~~~~~ 455 (485)
T 2qzs_A 381 LTQLYGLKY-----GTLPLVRRTGGLADTVSDCSLENLADGVASGFVFEDSNAWSLLRAIRRAFVLWSRPSLWRFVQRQA 455 (485)
T ss_dssp SHHHHHHHH-----TCEEEEESSHHHHHHCCBCCHHHHHTTCCCBEEECSSSHHHHHHHHHHHHHHHTSHHHHHHHHHHH
T ss_pred HHHHHHHHC-----CCCEEECCCCCccceeccCccccccccccceEEECCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 455666666 34788898888888874 3689999999999999999995 3555554443333
Q ss_pred HHHhhcCChhHHHHHHHHHHHHhh
Q psy9705 69 RKREKVHDVNYWMRSFLKGMGTLI 92 (140)
Q Consensus 69 ~~~V~~~~~~~W~~~~l~~l~~~~ 92 (140)
+ ...++....++.+++-..+..
T Consensus 456 ~--~~~fs~~~~~~~~~~ly~~~~ 477 (485)
T 2qzs_A 456 M--AMDFSWQVAAKSYRELYYRLK 477 (485)
T ss_dssp H--HCCCCHHHHHHHHHHHHHHHC
T ss_pred H--hhcCCHHHHHHHHHHHHHHhh
Confidence 3 267788888887776666553
No 15
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A*
Probab=95.43 E-value=0.014 Score=45.44 Aligned_cols=74 Identities=9% Similarity=0.050 Sum_probs=53.1
Q ss_pred cceeeeecccCCCCeeEEeCcCcchhhhhc-----cCceeCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh-hcCCh
Q psy9705 4 VAKEFVACQINEPPGVLIVSPFAGAGEQMH-----EALICNPYEIDAAAEVIHRALTMPEDERTLRMNYLRKRE-KVHDV 77 (140)
Q Consensus 4 va~Eyv~~q~~~~~g~LiLSEfaG~a~~L~-----~ai~VNP~d~~~~A~ai~~AL~m~~~er~~r~~~l~~~V-~~~~~ 77 (140)
+..|+++| .-++|.|...|..+.+. ..+.++| |.++++++|...+. .+ ..++++ ..++.
T Consensus 257 ~~~EAma~-----G~PvI~s~~~~~~e~~~~~~~~~g~~~~~-d~~~l~~~i~~l~~---~~------~~~~~~~~~~s~ 321 (342)
T 2iuy_A 257 VVSEAAVS-----GTPVVGTGNGCLAEIVPSVGEVVGYGTDF-APDEARRTLAGLPA---SD------EVRRAAVRLWGH 321 (342)
T ss_dssp HHHHHHHT-----TCCEEECCTTTHHHHGGGGEEECCSSSCC-CHHHHHHHHHTSCC---HH------HHHHHHHHHHBH
T ss_pred HHHHHHhc-----CCCEEEcCCCChHHHhcccCCCceEEcCC-CHHHHHHHHHHHHH---HH------HHHHHHHHhcCH
Confidence 34565555 34789999988888883 3799999 99999999999988 11 222333 55677
Q ss_pred hHHHHHHHHHHHHhh
Q psy9705 78 NYWMRSFLKGMGTLI 92 (140)
Q Consensus 78 ~~W~~~~l~~l~~~~ 92 (140)
...++.+++-+.+..
T Consensus 322 ~~~~~~~~~~~~~~~ 336 (342)
T 2iuy_A 322 VTIAERYVEQYRRLL 336 (342)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 788888777776653
No 16
>1rzu_A Glycogen synthase 1; glycosyl-transferase, GT-B fold, rossmann fold, ADP-binding, transferase; HET: ADP; 2.30A {Agrobacterium tumefaciens} SCOP: c.87.1.8 PDB: 1rzv_A
Probab=95.41 E-value=0.033 Score=45.41 Aligned_cols=82 Identities=12% Similarity=0.067 Sum_probs=59.0
Q ss_pred CcceeeeecccCCCCeeEEeCcCcchhhhhcc------------CceeCCCCHHHHHHHHHHHhCC--CHHHHHHHHHHH
Q psy9705 3 LVAKEFVACQINEPPGVLIVSPFAGAGEQMHE------------ALICNPYEIDAAAEVIHRALTM--PEDERTLRMNYL 68 (140)
Q Consensus 3 Lva~Eyv~~q~~~~~g~LiLSEfaG~a~~L~~------------ai~VNP~d~~~~A~ai~~AL~m--~~~er~~r~~~l 68 (140)
++..|+++| .-++|.|...|..+.+.+ .+.++|.|.+++|++|..++.+ .++.+.+..+..
T Consensus 380 ~~~lEAma~-----G~PvI~s~~gg~~e~v~~~~~~~~~~~~~~G~l~~~~d~~~la~~i~~ll~~~~~~~~~~~~~~~~ 454 (485)
T 1rzu_A 380 LTQLYALRY-----GCIPVVARTGGLADTVIDANHAALASKAATGVQFSPVTLDGLKQAIRRTVRYYHDPKLWTQMQKLG 454 (485)
T ss_dssp SHHHHHHHH-----TCEEEEESSHHHHHHCCBCCHHHHHTTCCCBEEESSCSHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHC-----CCCEEEeCCCChhheecccccccccccCCcceEeCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 455676666 347888999888888742 5899999999999999999963 555555444443
Q ss_pred HHHhhcCChhHHHHHHHHHHHHh
Q psy9705 69 RKREKVHDVNYWMRSFLKGMGTL 91 (140)
Q Consensus 69 ~~~V~~~~~~~W~~~~l~~l~~~ 91 (140)
++ ..++....++.++.-..+.
T Consensus 455 ~~--~~fs~~~~~~~~~~~y~~~ 475 (485)
T 1rzu_A 455 MK--SDVSWEKSAGLYAALYSQL 475 (485)
T ss_dssp HT--CCCBHHHHHHHHHHHHHHH
T ss_pred HH--HhCChHHHHHHHHHHHHHh
Confidence 32 6777777777777666554
No 17
>2x6q_A Trehalose-synthase TRET; biosynthetic protein; 2.20A {Pyrococcus horikoshii} PDB: 2x6r_A 2xa1_A 2xa2_A* 2xa9_A* 2xmp_A*
Probab=95.41 E-value=0.021 Score=45.53 Aligned_cols=80 Identities=15% Similarity=0.130 Sum_probs=59.3
Q ss_pred CcceeeeecccCCCCeeEEeCcCcchhhhhc---cCceeCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhh-cCChh
Q psy9705 3 LVAKEFVACQINEPPGVLIVSPFAGAGEQMH---EALICNPYEIDAAAEVIHRALTMPEDERTLRMNYLRKREK-VHDVN 78 (140)
Q Consensus 3 Lva~Eyv~~q~~~~~g~LiLSEfaG~a~~L~---~ai~VNP~d~~~~A~ai~~AL~m~~~er~~r~~~l~~~V~-~~~~~ 78 (140)
++..|+.+| .-|+|.|...|..+.+. ..+.++ |.+++|++|...++ .++++.+..+..++++. .++..
T Consensus 330 ~~~lEAma~-----G~PvI~~~~~g~~e~i~~~~~g~l~~--d~~~la~~i~~ll~-~~~~~~~~~~~a~~~~~~~fs~~ 401 (416)
T 2x6q_A 330 LTVTEAMWK-----GKPVIGRAVGGIKFQIVDGETGFLVR--DANEAVEVVLYLLK-HPEVSKEMGAKAKERVRKNFIIT 401 (416)
T ss_dssp HHHHHHHHT-----TCCEEEESCHHHHHHCCBTTTEEEES--SHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHTBHH
T ss_pred cHHHHHHHc-----CCCEEEccCCCChhheecCCCeEEEC--CHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHHcCHH
Confidence 345666665 24788899888888874 256776 99999999999998 56666666666677775 67888
Q ss_pred HHHHHHHHHHHH
Q psy9705 79 YWMRSFLKGMGT 90 (140)
Q Consensus 79 ~W~~~~l~~l~~ 90 (140)
..++.++.-+.+
T Consensus 402 ~~~~~~~~~~~~ 413 (416)
T 2x6q_A 402 KHMERYLDILNS 413 (416)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH
Confidence 888887766554
No 18
>2f9f_A First mannosyl transferase (WBAZ-1); alpha-beta protein, structural genomics, PSI, protein struct initiative; 1.80A {Archaeoglobus fulgidus} SCOP: c.87.1.8
Probab=93.21 E-value=0.028 Score=40.15 Aligned_cols=50 Identities=14% Similarity=0.210 Sum_probs=39.2
Q ss_pred CcceeeeecccCCCCeeEEeCcCcchhhhhc---cCceeCCCCHHHHHHHHHHHhCCCH
Q psy9705 3 LVAKEFVACQINEPPGVLIVSPFAGAGEQMH---EALICNPYEIDAAAEVIHRALTMPE 58 (140)
Q Consensus 3 Lva~Eyv~~q~~~~~g~LiLSEfaG~a~~L~---~ai~VNP~d~~~~A~ai~~AL~m~~ 58 (140)
++..|+++| .-++|.|...|..+.+. ..+.+ |.|.++++++|.+.++.+.
T Consensus 112 ~~~~Eama~-----G~PvI~~~~~~~~e~i~~~~~g~~~-~~d~~~l~~~i~~l~~~~~ 164 (177)
T 2f9f_A 112 LTPIEAMAS-----GKPVIAVNEGGFKETVINEKTGYLV-NADVNEIIDAMKKVSKNPD 164 (177)
T ss_dssp HHHHHHHHT-----TCCEEEESSHHHHHHCCBTTTEEEE-CSCHHHHHHHHHHHHHCTT
T ss_pred hHHHHHHHc-----CCcEEEeCCCCHHHHhcCCCccEEe-CCCHHHHHHHHHHHHhCHH
Confidence 345677666 24788888888887774 36778 9999999999999998776
No 19
>3l7y_A Putative uncharacterized protein SMU.1108C; hydrolase; 2.00A {Streptococcus mutans}
Probab=92.26 E-value=0.047 Score=42.36 Aligned_cols=14 Identities=21% Similarity=0.271 Sum_probs=12.1
Q ss_pred eEEEEeccccccCC
Q psy9705 127 WALLLDYDGELWLP 140 (140)
Q Consensus 127 rl~~lDydGTL~~~ 140 (140)
++|+||+||||+.+
T Consensus 38 Kli~fDlDGTLld~ 51 (304)
T 3l7y_A 38 KVIATDMDGTFLNS 51 (304)
T ss_dssp SEEEECCCCCCSCT
T ss_pred EEEEEeCCCCCCCC
Confidence 39999999999863
No 20
>3ij5_A 3-deoxy-D-manno-octulosonate 8-phosphate phosphat; IDP022 hydrolase, lipopolysaccharide biosynthesis, magnesium, STRU genomics; 1.95A {Yersinia pestis}
Probab=91.56 E-value=0.063 Score=40.40 Aligned_cols=14 Identities=29% Similarity=0.226 Sum_probs=12.2
Q ss_pred eEEEEeccccccCC
Q psy9705 127 WALLLDYDGELWLP 140 (140)
Q Consensus 127 rl~~lDydGTL~~~ 140 (140)
++++||.||||++.
T Consensus 50 k~viFDlDGTL~Ds 63 (211)
T 3ij5_A 50 RLLICDVDGVMSDG 63 (211)
T ss_dssp SEEEECCTTTTSSS
T ss_pred CEEEEeCCCCEECC
Confidence 49999999999863
No 21
>1vgv_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, isomerase; HET: UD1; 2.31A {Escherichia coli} SCOP: c.87.1.3 PDB: 1f6d_A*
Probab=91.52 E-value=0.16 Score=39.81 Aligned_cols=71 Identities=11% Similarity=0.035 Sum_probs=44.2
Q ss_pred ceeeeecccCCCCeeEEeCcC-cchhhhhc--cCceeCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCChhHHH
Q psy9705 5 AKEFVACQINEPPGVLIVSPF-AGAGEQMH--EALICNPYEIDAAAEVIHRALTMPEDERTLRMNYLRKREKVHDVNYWM 81 (140)
Q Consensus 5 a~Eyv~~q~~~~~g~LiLSEf-aG~a~~L~--~ai~VNP~d~~~~A~ai~~AL~m~~~er~~r~~~l~~~V~~~~~~~W~ 81 (140)
..|+.+| .-|+|.+.. .|..+... ..+.|+| |.++++++|.+.|+ .++.+++..+...++...++....+
T Consensus 294 ~lEA~a~-----G~PvI~~~~~~~~~e~v~~g~g~lv~~-d~~~la~~i~~ll~-d~~~~~~~~~~~~~~~~~~~~~~i~ 366 (384)
T 1vgv_A 294 QEEAPSL-----GKPVLVMRDTTERPEAVTAGTVRLVGT-DKQRIVEEVTRLLK-DENEYQAMSRAHNPYGDGQACSRIL 366 (384)
T ss_dssp GGTGGGG-----TCCEEEESSCCSCHHHHHHTSEEEECS-SHHHHHHHHHHHHH-CHHHHHHHHSSCCTTCCSCHHHHHH
T ss_pred HHHHHHc-----CCCEEEccCCCCcchhhhCCceEEeCC-CHHHHHHHHHHHHh-ChHHHhhhhhccCCCcCCCHHHHHH
Confidence 4576666 236777776 56666553 3688888 99999999999998 4555544333334444333433333
Q ss_pred H
Q psy9705 82 R 82 (140)
Q Consensus 82 ~ 82 (140)
+
T Consensus 367 ~ 367 (384)
T 1vgv_A 367 E 367 (384)
T ss_dssp H
T ss_pred H
Confidence 3
No 22
>3nuq_A Protein SSM1, putative nucleotide phosphatase; suppresses the 6-AU sensitivity of transcription elongation II; 1.70A {Saccharomyces cerevisiae} PDB: 3onn_A 3opx_A*
Probab=91.38 E-value=0.084 Score=39.90 Aligned_cols=13 Identities=23% Similarity=0.378 Sum_probs=11.8
Q ss_pred eEEEEeccccccC
Q psy9705 127 WALLLDYDGELWL 139 (140)
Q Consensus 127 rl~~lDydGTL~~ 139 (140)
++++||+||||++
T Consensus 58 k~i~FDlDGTL~d 70 (282)
T 3nuq_A 58 KVFFFDIDNCLYK 70 (282)
T ss_dssp CEEEECCTTTTSC
T ss_pred CEEEEecCCCccc
Confidence 3999999999986
No 23
>1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2 PDB: 1nlm_A*
Probab=91.28 E-value=0.13 Score=40.01 Aligned_cols=79 Identities=14% Similarity=0.072 Sum_probs=51.6
Q ss_pred ceeeeecccCCCCeeEEeCcCcch-------hhhh---ccCceeCCCC--HHHHHHHHHHHhCCCHHHHHHHHHHHHHHh
Q psy9705 5 AKEFVACQINEPPGVLIVSPFAGA-------GEQM---HEALICNPYE--IDAAAEVIHRALTMPEDERTLRMNYLRKRE 72 (140)
Q Consensus 5 a~Eyv~~q~~~~~g~LiLSEfaG~-------a~~L---~~ai~VNP~d--~~~~A~ai~~AL~m~~~er~~r~~~l~~~V 72 (140)
..|+++| .-|+|.+...|. +..+ +..+.+.|-| .+++|++|.+. .++.+.+..+...+++
T Consensus 267 ~~EAma~-----G~Pvi~~~~~g~~~~q~~~~~~~~~~g~g~~~~~~d~~~~~la~~i~~l---~~~~~~~~~~~~~~~~ 338 (364)
T 1f0k_A 267 VSEIAAA-----GLPALFVPFQHKDRQQYWNALPLEKAGAAKIIEQPQLSVDAVANTLAGW---SRETLLTMAERARAAS 338 (364)
T ss_dssp HHHHHHH-----TCCEEECCCCCTTCHHHHHHHHHHHTTSEEECCGGGCCHHHHHHHHHTC---CHHHHHHHHHHHHHTC
T ss_pred HHHHHHh-----CCCEEEeeCCCCchhHHHHHHHHHhCCcEEEeccccCCHHHHHHHHHhc---CHHHHHHHHHHHHHhh
Confidence 3455555 236888888764 2233 2378899987 99999999877 7777776666667777
Q ss_pred hcCChhHHHHHHHHHHHHh
Q psy9705 73 KVHDVNYWMRSFLKGMGTL 91 (140)
Q Consensus 73 ~~~~~~~W~~~~l~~l~~~ 91 (140)
..++...-++.+.+-..+.
T Consensus 339 ~~~~~~~~~~~~~~~y~~~ 357 (364)
T 1f0k_A 339 IPDATERVANEVSRVARAL 357 (364)
T ss_dssp CTTHHHHHHHHHHHHHTTC
T ss_pred ccCHHHHHHHHHHHHHHHH
Confidence 6666555555554444433
No 24
>2qlt_A (DL)-glycerol-3-phosphatase 1; APC7326, RHR2P, saccharom cerevisiae, structural genomics, PSI-2, protein structure initiative; 1.60A {Saccharomyces cerevisiae}
Probab=89.66 E-value=0.093 Score=39.82 Aligned_cols=12 Identities=42% Similarity=0.717 Sum_probs=11.2
Q ss_pred EEEEeccccccC
Q psy9705 128 ALLLDYDGELWL 139 (140)
Q Consensus 128 l~~lDydGTL~~ 139 (140)
+++||.||||+.
T Consensus 37 ~iifDlDGTLld 48 (275)
T 2qlt_A 37 AALFDVDGTIII 48 (275)
T ss_dssp EEEECCBTTTEE
T ss_pred EEEECCCCCCCC
Confidence 999999999985
No 25
>2b82_A APHA, class B acid phosphatase; DDDD acid phosphatase, metallo-ENZ hydrolase; HET: ADN; 1.25A {Escherichia coli} SCOP: c.108.1.12 PDB: 2b8j_A* 2hf7_A 1rmt_A* 1n9k_A 1rmq_A 1n8n_A* 1rmy_A* 2g1a_A* 3cz4_A 2heg_A* 1z5g_A 1z5u_A* 1z88_A 2aut_A
Probab=88.84 E-value=0.24 Score=36.85 Aligned_cols=13 Identities=23% Similarity=0.325 Sum_probs=11.7
Q ss_pred eEEEEeccccccC
Q psy9705 127 WALLLDYDGELWL 139 (140)
Q Consensus 127 rl~~lDydGTL~~ 139 (140)
+.+|||.||||++
T Consensus 38 kaviFDlDGTL~D 50 (211)
T 2b82_A 38 MAVGFDIDDTVLF 50 (211)
T ss_dssp CEEEECCBTTTEE
T ss_pred CEEEEcCCCCCCc
Confidence 4999999999985
No 26
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=88.09 E-value=0.98 Score=37.43 Aligned_cols=51 Identities=10% Similarity=-0.053 Sum_probs=39.7
Q ss_pred CHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh---hcCChhHHHHHHHHHHHHhhH
Q psy9705 42 EIDAAAEVIHRALTMPEDERTLRMNYLRKRE---KVHDVNYWMRSFLKGMGTLIT 93 (140)
Q Consensus 42 d~~~~A~ai~~AL~m~~~er~~r~~~l~~~V---~~~~~~~W~~~~l~~l~~~~~ 93 (140)
|.++++++|...+. .++.+.+..+..++.+ ..++....++.+..-+.+.+.
T Consensus 508 ~~~~la~~i~~l~~-~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~y~~~~~ 561 (568)
T 2vsy_A 508 DDAAFVAKAVALAS-DPAALTALHARVDVLRRASGVFHMDGFADDFGALLQALAR 561 (568)
T ss_dssp SHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHSSTTCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhc-CHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999887 5666666666667777 678888888888877776653
No 27
>4eze_A Haloacid dehalogenase-like hydrolase; magnesium binding site, enzyme function initiativ; 2.27A {Salmonella enterica subsp}
Probab=87.72 E-value=0.22 Score=39.55 Aligned_cols=13 Identities=15% Similarity=0.189 Sum_probs=11.9
Q ss_pred eEEEEeccccccC
Q psy9705 127 WALLLDYDGELWL 139 (140)
Q Consensus 127 rl~~lDydGTL~~ 139 (140)
++++||+||||+.
T Consensus 109 kaviFDlDGTLid 121 (317)
T 4eze_A 109 GIIAFDMDSTFIA 121 (317)
T ss_dssp CEEEECTBTTTBS
T ss_pred CEEEEcCCCCccC
Confidence 4999999999986
No 28
>3nb0_A Glycogen [starch] synthase isoform 2; glycogen synthase, glucose-6-phosphate, yeast, allosteric AC transferase; HET: G6P; 2.41A {Saccharomyces cerevisiae} PDB: 3rt1_A* 3nch_A 3naz_A 3o3c_A* 3rsz_A*
Probab=87.46 E-value=1.1 Score=40.27 Aligned_cols=78 Identities=14% Similarity=0.077 Sum_probs=49.4
Q ss_pred cceeeeecccCCCCeeEEeCcCcchhhhhc----------cCcee---CCCCHHHHHHHHHHHhC----CCHHHHHHHHH
Q psy9705 4 VAKEFVACQINEPPGVLIVSPFAGAGEQMH----------EALIC---NPYEIDAAAEVIHRALT----MPEDERTLRMN 66 (140)
Q Consensus 4 va~Eyv~~q~~~~~g~LiLSEfaG~a~~L~----------~ai~V---NP~d~~~~A~ai~~AL~----m~~~er~~r~~ 66 (140)
++.|-.+| .-|+|.|.-.|+..... ..+.| +|.|.++.+++|..+|. +++++|....+
T Consensus 534 ~~LEAmA~-----G~PvI~s~~gG~~d~V~dg~~~~~~~~tG~lV~~rd~~d~ee~aeaLa~aL~~f~~~d~~~r~~mr~ 608 (725)
T 3nb0_A 534 TPAECTVM-----GVPSITTNVSGFGSYMEDLIETNQAKDYGIYIVDRRFKAPDESVEQLVDYMEEFVKKTRRQRINQRN 608 (725)
T ss_dssp HHHHHHHT-----TCCEEEETTBHHHHHHHTTSCHHHHHHTTEEEECCSSSCHHHHHHHHHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHc-----CCCEEEeCCCChhhhhhccccccCCCCceEEEeCCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 44555444 35899999999876653 14666 57788888888888874 67777665555
Q ss_pred HHHHHhhcCChhHHHHHHHH
Q psy9705 67 YLRKREKVHDVNYWMRSFLK 86 (140)
Q Consensus 67 ~l~~~V~~~~~~~W~~~~l~ 86 (140)
+..+.....+-..=++..+.
T Consensus 609 ~ar~~A~~FSWe~iA~~Yl~ 628 (725)
T 3nb0_A 609 ATEALSDLLDWKRMGLEYVK 628 (725)
T ss_dssp HHHHGGGGGBHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHH
Confidence 55455555443333444443
No 29
>3nvb_A Uncharacterized protein; protein FKBH, protein fkbhstructural genomics, PSI-2, protei structure initiative; 1.71A {Bacteroides fragilis} PDB: 3slr_A
Probab=86.45 E-value=0.44 Score=39.63 Aligned_cols=27 Identities=22% Similarity=0.489 Sum_probs=20.4
Q ss_pred cHHHHHHHHHccCCCceEEEEeccccccC
Q psy9705 111 DFDEYLSKYIGTHEQAWALLLDYDGELWL 139 (140)
Q Consensus 111 ~~~~~~~~Y~~s~~R~rl~~lDydGTL~~ 139 (140)
.+..+....+....| +++||.|||||+
T Consensus 209 ~~~~~~~~l~~~~iK--~lv~DvDnTL~~ 235 (387)
T 3nvb_A 209 RTIDIIAAIQGKFKK--CLILDLDNTIWG 235 (387)
T ss_dssp HHHHHHHHHTTCCCC--EEEECCBTTTBB
T ss_pred HHHHHHHHHHhCCCc--EEEEcCCCCCCC
Confidence 445666666665555 999999999996
No 30
>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}
Probab=85.11 E-value=0.38 Score=39.15 Aligned_cols=13 Identities=23% Similarity=0.314 Sum_probs=11.9
Q ss_pred eEEEEeccccccC
Q psy9705 127 WALLLDYDGELWL 139 (140)
Q Consensus 127 rl~~lDydGTL~~ 139 (140)
++++||+||||++
T Consensus 186 k~viFD~DgTLi~ 198 (415)
T 3p96_A 186 RLIVFDVDSTLVQ 198 (415)
T ss_dssp CEEEECTBTTTBS
T ss_pred cEEEEcCcccCcC
Confidence 4999999999986
No 31
>2i33_A Acid phosphatase; HAD superfamily, hydrolase; 1.57A {Bacillus anthracis} PDB: 2i34_A
Probab=84.63 E-value=0.3 Score=37.84 Aligned_cols=14 Identities=29% Similarity=0.268 Sum_probs=12.2
Q ss_pred ceEEEEeccccccC
Q psy9705 126 AWALLLDYDGELWL 139 (140)
Q Consensus 126 ~rl~~lDydGTL~~ 139 (140)
.++|+||.||||++
T Consensus 59 ~kavifDlDGTLld 72 (258)
T 2i33_A 59 KPAIVLDLDETVLD 72 (258)
T ss_dssp EEEEEECSBTTTEE
T ss_pred CCEEEEeCcccCcC
Confidence 35999999999985
No 32
>3beo_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, allosteric, regulation, isomerase; HET: UD1 UDP; 1.70A {Bacillus anthracis} PDB: 1o6c_A
Probab=83.66 E-value=0.55 Score=36.38 Aligned_cols=67 Identities=6% Similarity=-0.030 Sum_probs=40.4
Q ss_pred eeeeecccCCCCeeEEeCc-Ccchhhhhc-c-CceeCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCChhH
Q psy9705 6 KEFVACQINEPPGVLIVSP-FAGAGEQMH-E-ALICNPYEIDAAAEVIHRALTMPEDERTLRMNYLRKREKVHDVNY 79 (140)
Q Consensus 6 ~Eyv~~q~~~~~g~LiLSE-faG~a~~L~-~-ai~VNP~d~~~~A~ai~~AL~m~~~er~~r~~~l~~~V~~~~~~~ 79 (140)
.|+.+| .-|+|.|. +.|..+.+. | .+.|+| |.+++|++|.+.++ .++.+++..+...+++..++...
T Consensus 295 lEA~a~-----G~Pvi~~~~~~~~~e~v~~g~g~~v~~-d~~~la~~i~~ll~-~~~~~~~~~~~~~~~~~~~~~~~ 364 (375)
T 3beo_A 295 EEAPSL-----GVPVLVLRDTTERPEGIEAGTLKLAGT-DEETIFSLADELLS-DKEAHDKMSKASNPYGDGRASER 364 (375)
T ss_dssp HHHHHH-----TCCEEECSSCCSCHHHHHTTSEEECCS-CHHHHHHHHHHHHH-CHHHHHHHCCCCCTTCCSCHHHH
T ss_pred HHHHhc-----CCCEEEecCCCCCceeecCCceEEcCC-CHHHHHHHHHHHHh-ChHhHhhhhhcCCCCCCCcHHHH
Confidence 455555 23567674 467666663 3 677777 99999999999997 45444433233333443333333
No 33
>3vue_A GBSS-I, granule-bound starch synthase 1, chloroplastic/amyloplastic; rossmann fold, glycosyltransferase, transferase; 2.70A {Oryza sativa japonica group} PDB: 3vuf_A*
Probab=80.64 E-value=0.33 Score=41.35 Aligned_cols=49 Identities=14% Similarity=0.234 Sum_probs=36.6
Q ss_pred CcceeeeecccCCCCeeEEeCcCcchhhhhcc-------------CceeCCCCHHHHHHHHHHHhCC
Q psy9705 3 LVAKEFVACQINEPPGVLIVSPFAGAGEQMHE-------------ALICNPYEIDAAAEVIHRALTM 56 (140)
Q Consensus 3 Lva~Eyv~~q~~~~~g~LiLSEfaG~a~~L~~-------------ai~VNP~d~~~~A~ai~~AL~m 56 (140)
++..|..+| .-++|.|.-.|..+...+ ++++.|.|.+++|++|.+||..
T Consensus 416 l~~lEAma~-----G~PvI~s~~gG~~e~V~dg~~G~~~~~~~~~g~l~~~~d~~~la~ai~ral~~ 477 (536)
T 3vue_A 416 LIQLQGMRY-----GTPCACASTGGLVDTVIEGKTGFHMGRLSVDCKVVEPSDVKKVAATLKRAIKV 477 (536)
T ss_dssp SHHHHHHHT-----TCCEEECSCTHHHHHCCBTTTEEECCCCCSCTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHc-----CCCEEEcCCCCchheeeCCCCccccccCCCceeEECCCCHHHHHHHHHHHHHh
Confidence 344454444 347888988888877632 4589999999999999999874
No 34
>3rhz_A GTF3, nucleotide sugar synthetase-like protein; glycosyltransferase, transferase; HET: UDP; 1.90A {Streptococcus parasanguinis} PDB: 3qkw_A*
Probab=79.71 E-value=2.2 Score=34.26 Aligned_cols=72 Identities=18% Similarity=0.248 Sum_probs=45.1
Q ss_pred eeeeecccCCCCeeEEeCcCcchhhhhcc---CceeCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCChhHHHH
Q psy9705 6 KEFVACQINEPPGVLIVSPFAGAGEQMHE---ALICNPYEIDAAAEVIHRALTMPEDERTLRMNYLRKREKVHDVNYWMR 82 (140)
Q Consensus 6 ~Eyv~~q~~~~~g~LiLSEfaG~a~~L~~---ai~VNP~d~~~~A~ai~~AL~m~~~er~~r~~~l~~~V~~~~~~~W~~ 82 (140)
+||++| .-|+|.+...+.++.... .+.++ +.++++++|.. |+++++.+..+...++..........+
T Consensus 258 ~eymA~-----G~PVI~~~~~~~~~~v~~~~~G~~~~--~~~e~~~~i~~---l~~~~~~~m~~na~~~a~~~~~~~f~k 327 (339)
T 3rhz_A 258 GSFLAA-----GIPVIVQEGIANQELIENNGLGWIVK--DVEEAIMKVKN---VNEDEYIELVKNVRSFNPILRKGFFTR 327 (339)
T ss_dssp HHHHHH-----TCCEEEETTCTTTHHHHHHTCEEEES--SHHHHHHHHHH---CCHHHHHHHHHHHHHHTHHHHTTHHHH
T ss_pred HHHHHc-----CCCEEEccChhHHHHHHhCCeEEEeC--CHHHHHHHHHH---hCHHHHHHHHHHHHHHHHHhhccHHHH
Confidence 466666 247788888888887742 35665 57888888874 567776665555555544444444444
Q ss_pred HHHHH
Q psy9705 83 SFLKG 87 (140)
Q Consensus 83 ~~l~~ 87 (140)
+.+.+
T Consensus 328 ~~l~~ 332 (339)
T 3rhz_A 328 RLLTE 332 (339)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 35
>2hy7_A Glucuronosyltransferase GUMK; glycosyltransferases, xanthan, membrane-associated proteins; 1.90A {Xanthomonas campestris} PDB: 2q6v_A* 3cv3_A* 3cuy_A*
Probab=73.52 E-value=1.6 Score=35.24 Aligned_cols=60 Identities=12% Similarity=0.078 Sum_probs=39.1
Q ss_pred eeeeecccCCCCeeEEeCcCcchhhhhc--cCce-eCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCChhHHHH
Q psy9705 6 KEFVACQINEPPGVLIVSPFAGAGEQMH--EALI-CNPYEIDAAAEVIHRALTMPEDERTLRMNYLRKREKVHDVNYWMR 82 (140)
Q Consensus 6 ~Eyv~~q~~~~~g~LiLSEfaG~a~~L~--~ai~-VNP~d~~~~A~ai~~AL~m~~~er~~r~~~l~~~V~~~~~~~W~~ 82 (140)
+||++| .-++|.|.. ... ..+. +.|-|.+++|++|...+..+. + ++...++-...++
T Consensus 309 ~eYla~-----G~PVIas~~-----v~~~~~G~l~v~~~d~~~la~ai~~ll~~~~-----~-----~~~~~~sw~~~a~ 368 (406)
T 2hy7_A 309 LQYDFF-----GLPAVCPNA-----VVGPYKSRFGYTPGNADSVIAAITQALEAPR-----V-----RYRQCLNWSDTTD 368 (406)
T ss_dssp HHHHHH-----TCCEEEEGG-----GTCSCSSEEEECTTCHHHHHHHHHHHHHCCC-----C-----CCSCCCBHHHHHH
T ss_pred HHHhhC-----CCcEEEehh-----cccCcceEEEeCCCCHHHHHHHHHHHHhCcc-----h-----hhhhcCCHHHHHH
Confidence 356577 235676665 222 2567 999999999999999998765 1 3345555555555
Q ss_pred HHH
Q psy9705 83 SFL 85 (140)
Q Consensus 83 ~~l 85 (140)
+++
T Consensus 369 ~~~ 371 (406)
T 2hy7_A 369 RVL 371 (406)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 36
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=72.79 E-value=1.4 Score=36.24 Aligned_cols=12 Identities=33% Similarity=0.399 Sum_probs=11.0
Q ss_pred eEEEEecccccc
Q psy9705 127 WALLLDYDGELW 138 (140)
Q Consensus 127 rl~~lDydGTL~ 138 (140)
+++|||.||||+
T Consensus 59 k~v~fD~DGTL~ 70 (416)
T 3zvl_A 59 KVAAFDLDGTLI 70 (416)
T ss_dssp SEEEECSBTTTE
T ss_pred eEEEEeCCCCcc
Confidence 499999999996
No 37
>4fe3_A Cytosolic 5'-nucleotidase 3; substrate complex, HAD-like, protein binding; HET: U5P; 1.74A {Mus musculus} PDB: 2g09_A* 2bdu_A* 2g08_A 2g06_A* 2g0a_A* 2q4t_A* 2g07_A* 2jga_A 2vkq_A 2cn1_A
Probab=66.06 E-value=2.1 Score=32.86 Aligned_cols=26 Identities=15% Similarity=0.261 Sum_probs=16.0
Q ss_pred HHHHHHHHc-cCCCceEEEEeccccccC
Q psy9705 113 DEYLSKYIG-THEQAWALLLDYDGELWL 139 (140)
Q Consensus 113 ~~~~~~Y~~-s~~R~rl~~lDydGTL~~ 139 (140)
.+....+.+ +..+ -.+++|+|||||.
T Consensus 30 e~~i~~~~kgg~~k-L~VV~DfdgTLT~ 56 (297)
T 4fe3_A 30 EEIICGLIKGGAAK-LQIITDFNMTLSR 56 (297)
T ss_dssp HHHHHHHHHHHHHH-EEEEECCTTTTBC
T ss_pred HHHHHHHHhCcchh-EEEEEcCCCCcee
Confidence 333334433 3444 2488999999984
No 38
>2x0d_A WSAF; GT4 family, transferase; HET: MSE; 2.28A {Geobacillus stearothermophilus} PDB: 2x0f_A* 2x0e_A*
Probab=65.10 E-value=3.2 Score=33.76 Aligned_cols=48 Identities=8% Similarity=-0.022 Sum_probs=34.5
Q ss_pred CcceeeeecccCCCCeeEEeCcCcchhhhhc---cCceeCCCCHHHHHHHHHHHhCC
Q psy9705 3 LVAKEFVACQINEPPGVLIVSPFAGAGEQMH---EALICNPYEIDAAAEVIHRALTM 56 (140)
Q Consensus 3 Lva~Eyv~~q~~~~~g~LiLSEfaG~a~~L~---~ai~VNP~d~~~~A~ai~~AL~m 56 (140)
+++.|+.+| .-++|.+. .|..+... ..++|.|-|.+++|++|...++-
T Consensus 329 ~~~lEAmA~-----G~PVV~~~-~g~~e~v~~~~~G~lv~~~d~~~la~ai~~ll~~ 379 (413)
T 2x0d_A 329 YPPLEMAHF-----GLRVITNK-YENKDLSNWHSNIVSLEQLNPENIAETLVELCMS 379 (413)
T ss_dssp SHHHHHHHT-----TCEEEEEC-BTTBCGGGTBTTEEEESSCSHHHHHHHHHHHHHH
T ss_pred cHHHHHHhC-----CCcEEEeC-CCcchhhhcCCCEEEeCCCCHHHHHHHHHHHHcC
Confidence 567788777 23455543 46655553 26889999999999999999873
No 39
>3n28_A Phosphoserine phosphatase; HAD family hydrolase, structural genomics, PSI, protein STRU initiative, nysgrc; 2.30A {Vibrio cholerae}
Probab=62.01 E-value=2.6 Score=32.89 Aligned_cols=15 Identities=20% Similarity=0.255 Sum_probs=12.5
Q ss_pred CCCceEEEEeccccccC
Q psy9705 123 HEQAWALLLDYDGELWL 139 (140)
Q Consensus 123 ~~R~rl~~lDydGTL~~ 139 (140)
.++ +++||+||||+.
T Consensus 106 ~~~--~viFD~DgTLi~ 120 (335)
T 3n28_A 106 KPG--LIVLDMDSTAIQ 120 (335)
T ss_dssp SCC--EEEECSSCHHHH
T ss_pred CCC--EEEEcCCCCCcC
Confidence 456 999999999963
No 40
>3ocu_A Lipoprotein E; hydrolase, outer membrane; HET: NMN; 1.35A {Haemophilus influenzae} PDB: 3ocv_A* 3ocw_A* 3ocx_A* 3ocz_A* 3ocy_A* 3sf0_A* 2hlk_A 2hll_A 3et4_A 3et5_A
Probab=61.90 E-value=1.9 Score=33.85 Aligned_cols=13 Identities=15% Similarity=0.141 Sum_probs=11.6
Q ss_pred eEEEEeccccccC
Q psy9705 127 WALLLDYDGELWL 139 (140)
Q Consensus 127 rl~~lDydGTL~~ 139 (140)
.+++||.||||++
T Consensus 59 ~avVfDIDgTlld 71 (262)
T 3ocu_A 59 KAVVADLNETMLD 71 (262)
T ss_dssp EEEEECCBTTTEE
T ss_pred eEEEEECCCcCCC
Confidence 4999999999975
No 41
>3pct_A Class C acid phosphatase; hydrolase, outer membrane; 1.85A {Pasteurella multocida}
Probab=58.17 E-value=3 Score=32.67 Aligned_cols=12 Identities=25% Similarity=0.371 Sum_probs=11.2
Q ss_pred EEEEeccccccC
Q psy9705 128 ALLLDYDGELWL 139 (140)
Q Consensus 128 l~~lDydGTL~~ 139 (140)
+++||.||||++
T Consensus 60 avVfDIDgTlld 71 (260)
T 3pct_A 60 AVVVDLDETMID 71 (260)
T ss_dssp EEEECCBTTTEE
T ss_pred EEEEECCccCcC
Confidence 999999999985
No 42
>1wih_A Mitochondrial ribosome recycling factor; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.67.3.1
Probab=57.34 E-value=3.9 Score=26.89 Aligned_cols=38 Identities=8% Similarity=0.164 Sum_probs=19.7
Q ss_pred eeEEeCcCcchhhhhccCceeCCCCHHHHHHHHHHHhC
Q psy9705 18 GVLIVSPFAGAGEQMHEALICNPYEIDAAAEVIHRALT 55 (140)
Q Consensus 18 g~LiLSEfaG~a~~L~~ai~VNP~d~~~~A~ai~~AL~ 55 (140)
+..-|++.|..+--=...|.|+|||.+....+|.+|+.
T Consensus 18 ~~~pL~qvA~isv~~~r~l~I~p~D~~~~~~~IekAI~ 55 (84)
T 1wih_A 18 GKVALNQIGQISMKSPQVILVNMASFPECTAAAIKAIR 55 (84)
T ss_dssp EEEEHHHHSEEEEEETTEEEEECTTCTTSHHHHHHHHH
T ss_pred CCccHHHceEEEcCCCCEEEEEecccHHHHHHHHHHHH
Confidence 34445555543222123589999882245555555543
No 43
>4gxt_A A conserved functionally unknown protein; structural genomics, PSI-biology; 1.82A {Anaerococcus prevotii}
Probab=55.66 E-value=2.9 Score=34.30 Aligned_cols=16 Identities=13% Similarity=0.227 Sum_probs=12.9
Q ss_pred ccCCCceEEEEecccccc
Q psy9705 121 GTHEQAWALLLDYDGELW 138 (140)
Q Consensus 121 ~s~~R~rl~~lDydGTL~ 138 (140)
..++| .-+||+||||+
T Consensus 37 ~~~~~--~AVFD~DgTl~ 52 (385)
T 4gxt_A 37 PDNKP--FAVFDWDNTSI 52 (385)
T ss_dssp TTSEE--EEEECCTTTTE
T ss_pred CCCCC--EEEEcCCCCee
Confidence 33455 99999999997
No 44
>1v4v_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, two domains, homodimer, riken structural genomics/proteomics initiative, RSGI; HET: MSE; 1.80A {Thermus thermophilus} SCOP: c.87.1.3
Probab=52.81 E-value=15 Score=28.21 Aligned_cols=42 Identities=12% Similarity=0.157 Sum_probs=27.9
Q ss_pred eEEeC-cCcchhhhhc-c-CceeCCCCHHHHHHHHHHHhCCCHHHHH
Q psy9705 19 VLIVS-PFAGAGEQMH-E-ALICNPYEIDAAAEVIHRALTMPEDERT 62 (140)
Q Consensus 19 ~LiLS-EfaG~a~~L~-~-ai~VNP~d~~~~A~ai~~AL~m~~~er~ 62 (140)
|+|.+ ...|..+... + .+.+. .|.+++|++|.+.|+ .++.++
T Consensus 295 PvI~~~~~~~~~~~~~~g~g~lv~-~d~~~la~~i~~ll~-d~~~~~ 339 (376)
T 1v4v_A 295 PVVVLRNVTERPEGLKAGILKLAG-TDPEGVYRVVKGLLE-NPEELS 339 (376)
T ss_dssp CEEECSSSCSCHHHHHHTSEEECC-SCHHHHHHHHHHHHT-CHHHHH
T ss_pred CEEeccCCCcchhhhcCCceEECC-CCHHHHHHHHHHHHh-ChHhhh
Confidence 45544 4556555553 3 56674 599999999999998 454443
No 45
>1eh1_A Ribosome recycling factor; translation, hinge variability; 2.60A {Thermus thermophilus} SCOP: d.67.3.1 PDB: 2qbe_6 2qbg_6 2qbi_6* 2qbk_6* 2v46_Y* 2v48_Y* 2z4l_6* 2z4n_6* 3j0d_J 3j0e_G
Probab=52.66 E-value=9 Score=28.63 Aligned_cols=39 Identities=13% Similarity=0.222 Sum_probs=24.8
Q ss_pred eeEEeCcCcchhhhhccCceeCCCCHHHHHHHHHHHhCCC
Q psy9705 18 GVLIVSPFAGAGEQMHEALICNPYEIDAAAEVIHRALTMP 57 (140)
Q Consensus 18 g~LiLSEfaG~a~~L~~ai~VNP~d~~~~A~ai~~AL~m~ 57 (140)
++.-|++.|..+--=..-|.|+||| .....+|.+|+..+
T Consensus 48 ~~~pL~qvA~Isv~~~r~l~I~p~D-~~~i~~IekAI~~S 86 (185)
T 1eh1_A 48 AHVPLNQIATVTAPDPRTLVVQSWD-QNALKAIEKAIRDS 86 (185)
T ss_dssp EEEEGGGTCEEECSSTTEEEEECSS-HHHHHHHHHHHSSS
T ss_pred CCccHHHceeeecCCCCEEEEecCC-HhHHHHHHHHHHHc
Confidence 4666777776543322358999999 45556677776543
No 46
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=51.93 E-value=5.7 Score=31.90 Aligned_cols=13 Identities=38% Similarity=0.342 Sum_probs=11.6
Q ss_pred eEEEEeccccccC
Q psy9705 127 WALLLDYDGELWL 139 (140)
Q Consensus 127 rl~~lDydGTL~~ 139 (140)
.+++||.||||+-
T Consensus 141 ~tLVLDLDeTLvh 153 (320)
T 3shq_A 141 KLLVLDIDYTLFD 153 (320)
T ss_dssp EEEEECCBTTTBC
T ss_pred cEEEEeccccEEc
Confidence 4999999999984
No 47
>2xci_A KDO-transferase, 3-deoxy-D-manno-2-octulosonic acid transferase; KDTA, GSEA, glycosyltransferase superfamily B,; HET: PG4; 2.00A {Aquifex aeolicus} PDB: 2xcu_A*
Probab=47.71 E-value=5.3 Score=31.82 Aligned_cols=52 Identities=8% Similarity=-0.068 Sum_probs=31.1
Q ss_pred eEEeC-cCcchhhhh----ccCceeCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh
Q psy9705 19 VLIVS-PFAGAGEQM----HEALICNPYEIDAAAEVIHRALTMPEDERTLRMNYLRKRE 72 (140)
Q Consensus 19 ~LiLS-EfaG~a~~L----~~ai~VNP~d~~~~A~ai~~AL~m~~~er~~r~~~l~~~V 72 (140)
|+|.+ ...|+.+.. ..-..+.|-|.+++|++|.+.|. + +.|++.-+..++++
T Consensus 304 PVI~~~~~~~~~e~~~~~~~~G~l~~~~d~~~La~ai~~ll~-d-~~r~~mg~~ar~~~ 360 (374)
T 2xci_A 304 PVIYGPYTHKVNDLKEFLEKEGAGFEVKNETELVTKLTELLS-V-KKEIKVEEKSREIK 360 (374)
T ss_dssp CEEECSCCTTSHHHHHHHHHTTCEEECCSHHHHHHHHHHHHH-S-CCCCCHHHHHHHHH
T ss_pred CEEECCCccChHHHHHHHHHCCCEEEeCCHHHHHHHHHHHHh-H-HHHHHHHHHHHHHH
Confidence 55555 444444432 23456778899999999999997 3 44443333334444
No 48
>3otg_A CALG1; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD; 2.08A {Micromonospora echinospora} PDB: 3oth_A*
Probab=42.81 E-value=45 Score=25.74 Aligned_cols=55 Identities=13% Similarity=0.030 Sum_probs=32.4
Q ss_pred chhhhhc---cCceeCCC--CHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCChhHHHH
Q psy9705 27 GAGEQMH---EALICNPY--EIDAAAEVIHRALTMPEDERTLRMNYLRKREKVHDVNYWMR 82 (140)
Q Consensus 27 G~a~~L~---~ai~VNP~--d~~~~A~ai~~AL~m~~~er~~r~~~l~~~V~~~~~~~W~~ 82 (140)
+.+..+. ..+.+.|- |.++++++|.+.|+- ++.|++-.+...++...++...-++
T Consensus 342 ~~~~~v~~~g~g~~~~~~~~~~~~l~~ai~~ll~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (412)
T 3otg_A 342 ANAQAVAQAGAGDHLLPDNISPDSVSGAAKRLLAE-ESYRAGARAVAAEIAAMPGPDEVVR 401 (412)
T ss_dssp HHHHHHHHHTSEEECCGGGCCHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHSCCHHHHHT
T ss_pred HHHHHHHHcCCEEecCcccCCHHHHHHHHHHHHhC-HHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 4555552 26677775 899999999999875 3333333333334445555444443
No 49
>3qle_A TIM50P; chaperone, mitochondrion, preprotein translocation; HET: 1PE; 1.83A {Saccharomyces cerevisiae EC1118}
Probab=41.66 E-value=9.8 Score=28.53 Aligned_cols=12 Identities=17% Similarity=0.246 Sum_probs=11.0
Q ss_pred eEEEEecccccc
Q psy9705 127 WALLLDYDGELW 138 (140)
Q Consensus 127 rl~~lDydGTL~ 138 (140)
.+++||.|+||+
T Consensus 35 ~tLVLDLDeTLv 46 (204)
T 3qle_A 35 LTLVITLEDFLV 46 (204)
T ss_dssp EEEEEECBTTTE
T ss_pred eEEEEeccccEE
Confidence 489999999997
No 50
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=35.95 E-value=25 Score=21.10 Aligned_cols=51 Identities=8% Similarity=0.026 Sum_probs=32.2
Q ss_pred CCCCHHHHHHHHHHHhCCCH----HHHHHHHHHHHH-HhhcCChhHHHHHHHHHHH
Q psy9705 39 NPYEIDAAAEVIHRALTMPE----DERTLRMNYLRK-REKVHDVNYWMRSFLKGMG 89 (140)
Q Consensus 39 NP~d~~~~A~ai~~AL~m~~----~er~~r~~~l~~-~V~~~~~~~W~~~~l~~l~ 89 (140)
+||..++=..-+.-...... ---..-|+.+.+ .+..||-+.|-++++..|.
T Consensus 3 ~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 3 IAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHcc
Confidence 45655554444444433321 113466778877 7899999999999987653
No 51
>2iyf_A OLED, oleandomycin glycosyltransferase; antibiotic resistance, glycosylation, enzyme, macrolide, carbohydrate; HET: ERY UDP; 1.7A {Streptomyces antibioticus}
Probab=35.18 E-value=1e+02 Score=23.93 Aligned_cols=48 Identities=8% Similarity=-0.049 Sum_probs=28.5
Q ss_pred CceeCCC--CHHHHHHHHHHHhCCCHHHHHHHHHHHHH-HhhcCChhHHHHHH
Q psy9705 35 ALICNPY--EIDAAAEVIHRALTMPEDERTLRMNYLRK-REKVHDVNYWMRSF 84 (140)
Q Consensus 35 ai~VNP~--d~~~~A~ai~~AL~m~~~er~~r~~~l~~-~V~~~~~~~W~~~~ 84 (140)
++.+.+- |.++++++|.+.|+ .++ .+++..++.+ +...+.....++.+
T Consensus 344 g~~~~~~~~~~~~l~~~i~~ll~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~i 394 (430)
T 2iyf_A 344 ARKLATEEATADLLRETALALVD-DPE-VARRLRRIQAEMAQEGGTRRAADLI 394 (430)
T ss_dssp EEECCCC-CCHHHHHHHHHHHHH-CHH-HHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred EEEcCCCCCCHHHHHHHHHHHHc-CHH-HHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 5677765 88999999999997 343 3334433333 33344444444433
No 52
>1ise_A Ribosome recycling factor; translation; 2.20A {Escherichia coli} SCOP: d.67.3.1 PDB: 1ek8_A* 1zn0_A 1zn1_A 2rdo_8
Probab=33.66 E-value=9.2 Score=28.59 Aligned_cols=36 Identities=14% Similarity=0.105 Sum_probs=22.0
Q ss_pred eeEEeCcCcchhhhhccCceeCCCC---HHHHHHHHHHH
Q psy9705 18 GVLIVSPFAGAGEQMHEALICNPYE---IDAAAEVIHRA 53 (140)
Q Consensus 18 g~LiLSEfaG~a~~L~~ai~VNP~d---~~~~A~ai~~A 53 (140)
++.-|++.|..+--=..-|.|+||| +..+..||..+
T Consensus 47 ~~~pL~qvA~Isv~~~r~l~I~p~D~~~i~~IekAI~~S 85 (185)
T 1ise_A 47 TPTPLRQLASVTVEDSRTLKINVFDRSMSPAVEKAIMAS 85 (185)
T ss_dssp EEEEGGGTEEEEEEETTEEEEEESSGGGHHHHHHHHHTT
T ss_pred CcccHHHceeeecCCCCEEEEeccCHhHHHHHHHHHHHc
Confidence 4666777766533222358999999 55555555554
No 53
>3ot5_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta; HET: PGE; 2.20A {Listeria monocytogenes}
Probab=33.29 E-value=59 Score=26.04 Aligned_cols=37 Identities=8% Similarity=-0.011 Sum_probs=25.2
Q ss_pred eEEeC-cCcchhhhhc-c-CceeCCCCHHHHHHHHHHHhCC
Q psy9705 19 VLIVS-PFAGAGEQMH-E-ALICNPYEIDAAAEVIHRALTM 56 (140)
Q Consensus 19 ~LiLS-EfaG~a~~L~-~-ai~VNP~d~~~~A~ai~~AL~m 56 (140)
|+|+. ..++.-+... | ++.|.+ |.++++++|...|.-
T Consensus 322 PvV~~~~~~~~~e~v~~g~~~lv~~-d~~~l~~ai~~ll~~ 361 (403)
T 3ot5_A 322 PVLVLRDTTERPEGIEAGTLKLIGT-NKENLIKEALDLLDN 361 (403)
T ss_dssp CEEECCSSCSCHHHHHHTSEEECCS-CHHHHHHHHHHHHHC
T ss_pred CEEEecCCCcchhheeCCcEEEcCC-CHHHHHHHHHHHHcC
Confidence 34444 5555544442 4 566776 999999999999873
No 54
>1dd5_A Ribosome recycling factor; three-helix bundle, beta-alpha-beta sandwich; 2.55A {Thermotoga maritima} SCOP: d.67.3.1 PDB: 1t1m_C
Probab=32.57 E-value=8.5 Score=28.77 Aligned_cols=36 Identities=14% Similarity=0.228 Sum_probs=23.0
Q ss_pred eeEEeCcCcchhhhhccCceeCCCC---HHHHHHHHHHH
Q psy9705 18 GVLIVSPFAGAGEQMHEALICNPYE---IDAAAEVIHRA 53 (140)
Q Consensus 18 g~LiLSEfaG~a~~L~~ai~VNP~d---~~~~A~ai~~A 53 (140)
++.-|++.|..+--=..-|.|+||| +..+..||..+
T Consensus 47 ~~~pL~qvA~Isv~~~r~l~I~p~D~~~i~~IekAI~~S 85 (185)
T 1dd5_A 47 VPTPVNQLATISISEERTLVIKPWDKSVLSLIEKAINAS 85 (185)
T ss_dssp EEEEGGGSEEEEECSTTEEEEEESSTTHHHHHHHHHHHS
T ss_pred CcccHHHceeeecCCCCEEEEEecCHhHHHHHHHHHHHc
Confidence 4666777766543322358999999 55566666655
No 55
>1j2m_A CPI-17, 17-kDa PKC-potentiated inhibitory protein of PP1; helix bundle, protein binding; NMR {Sus scrofa} SCOP: a.165.1.1 PDB: 2rlt_A* 1j2n_A 1k5o_A
Probab=32.30 E-value=28 Score=23.51 Aligned_cols=39 Identities=21% Similarity=0.313 Sum_probs=23.9
Q ss_pred HHHHhCC-CHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHH
Q psy9705 50 IHRALTM-PEDERTLRMNYLRKREKVHDVNYWMRSFLKGMG 89 (140)
Q Consensus 50 i~~AL~m-~~~er~~r~~~l~~~V~~~~~~~W~~~~l~~l~ 89 (140)
|+.-|.| |.+||+.+.+.+..-..+.+ ..++..+|..|+
T Consensus 56 iDeLLDl~sdeeR~~~LqelL~~C~~pt-E~FI~eLL~rlk 95 (99)
T 1j2m_A 56 IDELLELESEEERSRKIQGLLKSCTNPT-ENFVQELLVKLR 95 (99)
T ss_dssp SHHHHCCTTTTHHHHHHHHHHHTTSCCC-HHHHHHHHHHTT
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHcCCCH-HHHHHHHHHHHH
Confidence 5667888 56677777777766555544 444444444443
No 56
>1ge9_A Ribosome recycling factor; three-helix bundle; NMR {Aquifex aeolicus} SCOP: d.67.3.1
Probab=31.16 E-value=23 Score=26.38 Aligned_cols=37 Identities=11% Similarity=0.266 Sum_probs=21.8
Q ss_pred eeEEeCcCcchhhhhccCceeCCCC---HHHHHHHHHHHh
Q psy9705 18 GVLIVSPFAGAGEQMHEALICNPYE---IDAAAEVIHRAL 54 (140)
Q Consensus 18 g~LiLSEfaG~a~~L~~ai~VNP~d---~~~~A~ai~~AL 54 (140)
++.-|++.|..+--=..-|.|+||| +..+..||..-|
T Consensus 50 ~~tpL~qvA~Isv~~~r~l~I~p~D~~~i~~IekAI~~dL 89 (184)
T 1ge9_A 50 SKVPIKQLGTISVPEHNQIVIQVWDQNAVPAIEKAIREEL 89 (184)
T ss_dssp CEECTTTTCEEECSSSSEEEEECSSSSHHHHHHHHHHHHH
T ss_pred CCccHHHceeeecCCCCEEEEEecCHHHHHHHHHHHHhCC
Confidence 4556666665533222358999999 455555555433
No 57
>3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC; 1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A*
Probab=30.46 E-value=1.8e+02 Score=22.16 Aligned_cols=24 Identities=8% Similarity=0.037 Sum_probs=20.4
Q ss_pred CceeCC----CCHHHHHHHHHHHhCCCH
Q psy9705 35 ALICNP----YEIDAAAEVIHRALTMPE 58 (140)
Q Consensus 35 ai~VNP----~d~~~~A~ai~~AL~m~~ 58 (140)
++.+.| .+.++++++|.+.|+-+.
T Consensus 331 g~~~~~~~~~~~~~~l~~ai~~ll~~~~ 358 (391)
T 3tsa_A 331 GICLPDEQAQSDHEQFTDSIATVLGDTG 358 (391)
T ss_dssp EEECCSHHHHTCHHHHHHHHHHHHTCTH
T ss_pred EEecCcccccCCHHHHHHHHHHHHcCHH
Confidence 678888 899999999999998643
No 58
>1wqg_A Ribosome recycling factor; translation factor, triple-helix bundle, protein synthesis, translation; 2.15A {Mycobacterium tuberculosis} SCOP: d.67.3.1 PDB: 1wqf_A 1wqh_A
Probab=26.24 E-value=11 Score=28.14 Aligned_cols=36 Identities=17% Similarity=0.312 Sum_probs=22.6
Q ss_pred eeEEeCcCcchhhhhccCceeCCCC---HHHHHHHHHHH
Q psy9705 18 GVLIVSPFAGAGEQMHEALICNPYE---IDAAAEVIHRA 53 (140)
Q Consensus 18 g~LiLSEfaG~a~~L~~ai~VNP~d---~~~~A~ai~~A 53 (140)
++.-|++.|..+--=..-|.|+||| +..+..||..+
T Consensus 47 ~~~pL~qvA~Isv~~~r~l~I~p~D~~~i~~IekAI~~S 85 (185)
T 1wqg_A 47 AATPITQLASINVPEARLVVIKPYEANQLRAIETAIRNS 85 (185)
T ss_dssp EEEEGGGSEEEEEEETTEEEEEESSGGGHHHHHHHHHHS
T ss_pred CcccHHHceeeecCCCCEEEEEeCCHhHHHHHHHHHHHc
Confidence 4566677665532212358999999 56666666665
No 59
>1is1_A Ribosome recycling factor; translation; 2.20A {Vibrio parahaemolyticus} SCOP: d.67.3.1 PDB: 3r8n_Y
Probab=25.38 E-value=24 Score=26.30 Aligned_cols=36 Identities=8% Similarity=0.093 Sum_probs=23.5
Q ss_pred eeEEeCcCcchhhhhccCceeCCCC---HHHHHHHHHHH
Q psy9705 18 GVLIVSPFAGAGEQMHEALICNPYE---IDAAAEVIHRA 53 (140)
Q Consensus 18 g~LiLSEfaG~a~~L~~ai~VNP~d---~~~~A~ai~~A 53 (140)
++.-|++.|..+--=..-|.|+||| +..+..||..+
T Consensus 47 ~~~pL~qvA~Isv~~~r~l~I~p~D~~~i~~IekAI~~S 85 (185)
T 1is1_A 47 AATPLNQVANVVAEDARTLAITVFDKELTQKVEKAIMMS 85 (185)
T ss_dssp EEEEGGGTEEEEEEETTEEEEEESSTTTHHHHHHHHHHT
T ss_pred CCccHHHceeeecCCCCEEEEEecCHhHHHHHHHHHHHc
Confidence 4566677665533222358999999 66677777766
No 60
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=24.39 E-value=1.9e+02 Score=22.17 Aligned_cols=47 Identities=4% Similarity=0.003 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHH
Q psy9705 43 IDAAAEVIHRALTMPEDERTLRMNYLRKREKVHDVNYWMRSFLKGMGT 90 (140)
Q Consensus 43 ~~~~A~ai~~AL~m~~~er~~r~~~l~~~V~~~~~~~W~~~~l~~l~~ 90 (140)
.+++++.++.|-..+.++|-...++..+.+...+.. -...|+..+-.
T Consensus 14 ~~~v~~lln~A~~~~~~~kl~~L~qa~el~~~~dp~-ll~~~l~~il~ 60 (257)
T 3gs3_A 14 RAKVVDWCNELVIASPSTKCELLAKVQETVLGSCAE-LAEEFLESVLS 60 (257)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTTTGG-GHHHHHHHHHG
T ss_pred HHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHccCHh-HHHHHHHHHHH
Confidence 378899999999988899999999999976665533 44555555544
No 61
>3dzc_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, in diseases, isomerase, center for structural genomics of INFE diseases, csgid; 2.35A {Vibrio cholerae}
Probab=24.38 E-value=71 Score=25.39 Aligned_cols=36 Identities=11% Similarity=0.116 Sum_probs=24.8
Q ss_pred eEEeC-cCcchhhhhc-c-CceeCCCCHHHHHHHHHHHhC
Q psy9705 19 VLIVS-PFAGAGEQMH-E-ALICNPYEIDAAAEVIHRALT 55 (140)
Q Consensus 19 ~LiLS-EfaG~a~~L~-~-ai~VNP~d~~~~A~ai~~AL~ 55 (140)
|+|++ ..+|..+... | ++.|.+ |.++++++|.+.|.
T Consensus 328 PvV~~~~~~~~~e~v~~G~~~lv~~-d~~~l~~ai~~ll~ 366 (396)
T 3dzc_A 328 PVLVMRETTERPEAVAAGTVKLVGT-NQQQICDALSLLLT 366 (396)
T ss_dssp CEEECCSSCSCHHHHHHTSEEECTT-CHHHHHHHHHHHHH
T ss_pred CEEEccCCCcchHHHHcCceEEcCC-CHHHHHHHHHHHHc
Confidence 34445 6666554442 4 566655 89999999999986
No 62
>2xse_A Thymine dioxygenase JBP1; oxidoreductase, DNA-binding; HET: MSE; 1.90A {Leishmania tarentolae}
Probab=24.05 E-value=51 Score=23.88 Aligned_cols=15 Identities=33% Similarity=0.574 Sum_probs=12.2
Q ss_pred CCCHHHHHHHHHHHH
Q psy9705 55 TMPEDERTLRMNYLR 69 (140)
Q Consensus 55 ~m~~~er~~r~~~l~ 69 (140)
.||+||+++|.++-.
T Consensus 145 DMPpEEqeRR~~Rk~ 159 (170)
T 2xse_A 145 DMPPEEKKRRMERKQ 159 (170)
T ss_dssp CCCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHH
Confidence 699999998887643
No 63
>2jc9_A Cytosolic purine 5'-nucleotidase; cytosolic 5-prime nucleotidase II, GMP-IMP specific nucleotidase, CN-II, NT5C2, hydrolase, polymorphism; HET: ADN; 1.5A {Homo sapiens} PDB: 2j2c_A* 2xje_A* 2xjf_A* 2jcm_A* 2xcw_A* 2xcv_A* 2xcx_A 2xjb_A* 2xjc_A* 2xjd_A*
Probab=24.05 E-value=27 Score=30.36 Aligned_cols=13 Identities=23% Similarity=0.036 Sum_probs=11.3
Q ss_pred ceEEEEecccccc
Q psy9705 126 AWALLLDYDGELW 138 (140)
Q Consensus 126 ~rl~~lDydGTL~ 138 (140)
..+|-||||+||+
T Consensus 65 I~~iGFDmDyTLa 77 (555)
T 2jc9_A 65 IKCFGFDMDYTLA 77 (555)
T ss_dssp CCEEEECTBTTTB
T ss_pred CCEEEECCccccc
Confidence 3589999999997
No 64
>2lwd_A Probable ATP-dependent RNA helicase DDX58; RIG-I, CARD, sensor, viral RNA, signaling protein; NMR {Homo sapiens} PDB: 2lwe_A
Probab=21.90 E-value=1.4e+02 Score=19.76 Aligned_cols=51 Identities=12% Similarity=0.057 Sum_probs=30.3
Q ss_pred CCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHh
Q psy9705 39 NPYEIDAAAEVIHRALTMPEDERTLRMNYLRKREKVHDVNYWMRSFLKGMGTL 91 (140)
Q Consensus 39 NP~d~~~~A~ai~~AL~m~~~er~~r~~~l~~~V~~~~~~~W~~~~l~~l~~~ 91 (140)
+||=..+-.+.|...-+.... ..-...+.+.+.+.....|.+.|+..|...
T Consensus 38 ~~~L~~~d~E~I~a~~~~~G~--~~aa~~LL~~L~r~~~~gWf~~fl~AL~~~ 88 (100)
T 2lwd_A 38 SECLINQECEEILQICSTKGM--MAGAEKLVECLLRSDKENWPKTLKLALEKE 88 (100)
T ss_dssp TTTSCHHHHHHHHHHHHHTCH--HHHHHHHHHHHHHCCCTHHHHHHHHHHHHH
T ss_pred HHHCCHHHHHHHHHHHHccCh--HHHHHHHHHHHHhcCcCCcHHHHHHHHHHc
Confidence 344444445555443322111 122345677777766689999999999866
No 65
>1upt_B Golgi autoantigen, golgin subfamily A member 4; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: a.193.1.1 PDB: 1r4a_E*
Probab=21.74 E-value=1.5e+02 Score=18.12 Aligned_cols=26 Identities=27% Similarity=0.432 Sum_probs=21.5
Q ss_pred CHHHHHHHHHHHhCCCHHHHHHHHHH
Q psy9705 42 EIDAAAEVIHRALTMPEDERTLRMNY 67 (140)
Q Consensus 42 d~~~~A~ai~~AL~m~~~er~~r~~~ 67 (140)
....++.+|-..|.-|++|.+.-.++
T Consensus 22 ~~~~m~kaI~avL~Fs~~e~q~il~~ 47 (60)
T 1upt_B 22 ETKTMAKVITTVLKFPDDQTQKILER 47 (60)
T ss_dssp SHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 56789999999999999997765443
No 66
>4ehi_A Bifunctional purine biosynthesis protein PURH; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE BTB; 2.28A {Campylobacter jejuni subsp}
Probab=21.05 E-value=73 Score=27.58 Aligned_cols=48 Identities=17% Similarity=0.256 Sum_probs=38.6
Q ss_pred CceeCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCh--hHHHHH
Q psy9705 35 ALICNPYEIDAAAEVIHRALTMPEDERTLRMNYLRKREKVHDV--NYWMRS 83 (140)
Q Consensus 35 ai~VNP~d~~~~A~ai~~AL~m~~~er~~r~~~l~~~V~~~~~--~~W~~~ 83 (140)
++.++|-|+..+.+.|+. =..+.+.|++.-.+.+++...+|+ ..|...
T Consensus 163 ~Vv~dp~dY~~vl~~l~~-g~~~~~~R~~lA~kAF~~ta~YD~aI~~~l~~ 212 (534)
T 4ehi_A 163 MVLCDPLDYEKVIETLKK-GQNDENFRLNLMIKAYEHTANYDAYIANYMNE 212 (534)
T ss_dssp EEECCGGGHHHHHHHHHT-TCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEECCHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 578999999999999986 567889999988888888887764 345543
No 67
>3zzm_A Bifunctional purine biosynthesis protein PURH; transferase, hydrolase; HET: JLN; 2.20A {Mycobacterium tuberculosis} PDB: 4a1o_A*
Probab=20.61 E-value=76 Score=27.39 Aligned_cols=42 Identities=12% Similarity=0.108 Sum_probs=35.8
Q ss_pred CceeCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCh
Q psy9705 35 ALICNPYEIDAAAEVIHRALTMPEDERTLRMNYLRKREKVHDV 77 (140)
Q Consensus 35 ai~VNP~d~~~~A~ai~~AL~m~~~er~~r~~~l~~~V~~~~~ 77 (140)
++.++|-|+..+.+.|+. =..+.+.|++.-.+.+++...+|.
T Consensus 149 ~vv~dp~dY~~vl~~l~~-g~~~~~~R~~lA~kAF~~ta~YD~ 190 (523)
T 3zzm_A 149 AVVTDPLGYHGVLAALRA-GGFTLAERKRLASLAFQHIAEYDI 190 (523)
T ss_dssp EEECCGGGHHHHHHHHHT-TSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred EEECCHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999999985 467889999988888888877764
No 68
>2bsj_A Chaperone protein SYCT; type III secretion, effector, YOPT; 1.83A {Yersinia enterocolitica} PDB: 2bho_A 2bsh_A 2bsi_A
Probab=20.55 E-value=84 Score=21.83 Aligned_cols=18 Identities=11% Similarity=0.455 Sum_probs=14.5
Q ss_pred hhHHHHHHHHHHHHhhHh
Q psy9705 77 VNYWMRSFLKGMGTLITE 94 (140)
Q Consensus 77 ~~~W~~~~l~~l~~~~~~ 94 (140)
.+.|.++|+.++......
T Consensus 100 lqAWlErFIdDieqr~~p 117 (133)
T 2bsj_A 100 MQAWLERFIDDIEQRKEP 117 (133)
T ss_dssp HHHHHHHHHHHHHHHTSG
T ss_pred HHHHHHHHHHHHHHhcCC
Confidence 378999999999876433
Done!