RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy9705
(140 letters)
>gnl|CDD|99963 cd03788, GT1_TPS, Trehalose-6-Phosphate Synthase (TPS) is a
glycosyltransferase that catalyses the synthesis of
alpha,alpha-1,1-trehalose-6-phosphate from
glucose-6-phosphate using a UDP-glucose donor. It is a
key enzyme in the trehalose synthesis pathway. Trehalose
is a nonreducing disaccharide present in a wide variety
of organisms and may serve as a source of energy and
carbon. It is characterized most notably in insect,
plant, and microbial cells. Its production is often
associated with a variety of stress conditions,
including desiccation, dehydration, heat, cold, and
oxidation. This family represents the catalytic domain
of the TPS. Some members of this domain family coexist
with a C-terminal trehalose phosphatase domain.
Length = 460
Score = 131 bits (332), Expect = 3e-37
Identities = 50/86 (58%), Positives = 62/86 (72%), Gaps = 1/86 (1%)
Query: 1 MNLVAKEFVACQINEPPGVLIVSPFAGAGEQMHEALICNPYEIDAAAEVIHRALTMPEDE 60
MNLVAKE+VACQ ++ PGVLI+S FAGA E++ AL+ NPY+ID A+ IHRALTMP +E
Sbjct: 373 MNLVAKEYVACQ-DDDPGVLILSEFAGAAEELSGALLVNPYDIDEVADAIHRALTMPLEE 431
Query: 61 RTLRMNYLRKREKVHDVNYWMRSFLK 86
R R LR+ + HDV W SFL
Sbjct: 432 RRERHRKLREYVRTHDVQAWANSFLD 457
>gnl|CDD|184712 PRK14501, PRK14501, putative bifunctional trehalose-6-phosphate
synthase/HAD hydrolase subfamily IIB; Provisional.
Length = 726
Score = 125 bits (316), Expect = 2e-34
Identities = 52/137 (37%), Positives = 78/137 (56%), Gaps = 7/137 (5%)
Query: 1 MNLVAKEFVACQINEPPGVLIVSPFAGAGEQMHEALICNPYEIDAAAEVIHRALTMPEDE 60
MNLVAKE+VA + + GVLI+S AGA ++ EAL+ NP +I+ A I RAL MPE+E
Sbjct: 374 MNLVAKEYVASRTDGD-GVLILSEMAGAAAELAEALLVNPNDIEGIAAAIKRALEMPEEE 432
Query: 61 RTLRMNYLRKREKVHDVNYWMRSFLKGMGTLITEDGDDVLPTTMQPVTLEDFDEYLSKYI 120
+ RM +++R + +DV+ W FL + + + + P+T +E +++Y
Sbjct: 433 QRERMQAMQERLRRYDVHKWASDFLDELRE--AAEKNKAFASK--PITPAAAEEIIARY- 487
Query: 121 GTHEQAWALLLDYDGEL 137
LLLDYDG L
Sbjct: 488 -RAASRRLLLLDYDGTL 503
>gnl|CDD|233848 TIGR02400, trehalose_OtsA, alpha,alpha-trehalose-phosphate synthase
[UDP-forming]. This enzyme catalyzes the key,
penultimate step in biosynthesis of trehalose, a
compatible solute made as an osmoprotectant in some
species in all three domains of life. The gene symbol
OtsA stands for osmotically regulated trehalose
synthesis A. Trehalose helps protect against both
osmotic and thermal stresses, and is made from two
glucose subunits. This model excludes
glucosylglycerol-phosphate synthase, an enzyme of an
analogous osmoprotectant system in many cyanobacterial
strains. This model does not identify archaeal examples,
as they are more divergent than
glucosylglycerol-phosphate synthase. Sequences that
score in the gray zone between the trusted and noise
cutoffs include a number of yeast multidomain proteins
in which the N-terminal domain may be functionally
equivalent to this family. The gray zone also includes
the OtsA of Cornyebacterium glutamicum (and related
species), shown to be responsible for synthesis of only
trace amounts of trehalose while the majority is
synthesized by the TreYZ pathway; the significance of
OtsA in this species is unclear (see Wolf, et al.,
PMID:12890033) [Cellular processes, Adaptations to
atypical conditions].
Length = 456
Score = 115 bits (291), Expect = 2e-31
Identities = 42/86 (48%), Positives = 57/86 (66%), Gaps = 1/86 (1%)
Query: 1 MNLVAKEFVACQINEPPGVLIVSPFAGAGEQMHEALICNPYEIDAAAEVIHRALTMPEDE 60
MNLVAKE+VA Q + GVLI+S FAGA ++++ AL+ NPY+ID A+ I RALTMP +E
Sbjct: 368 MNLVAKEYVAAQ-DPKDGVLILSEFAGAAQELNGALLVNPYDIDGMADAIARALTMPLEE 426
Query: 61 RTLRMNYLRKREKVHDVNYWMRSFLK 86
R R + + + +DV W FL
Sbjct: 427 REERHRAMMDKLRKNDVQRWREDFLS 452
>gnl|CDD|223457 COG0380, OtsA, Trehalose-6-phosphate synthase [Carbohydrate
transport and metabolism].
Length = 486
Score = 107 bits (269), Expect = 3e-28
Identities = 44/86 (51%), Positives = 55/86 (63%), Gaps = 1/86 (1%)
Query: 1 MNLVAKEFVACQINEPPGVLIVSPFAGAGEQMHEALICNPYEIDAAAEVIHRALTMPEDE 60
MNLVAKE+VA Q + PGVLI+S FAGA ++ +ALI NP++ A+ I RALTM +E
Sbjct: 391 MNLVAKEYVAAQ-RDKPGVLILSEFAGAASELRDALIVNPWDTKEVADAIKRALTMSLEE 449
Query: 61 RTLRMNYLRKREKVHDVNYWMRSFLK 86
R R L K+ HDV W SFL
Sbjct: 450 RKERHEKLLKQVLTHDVARWANSFLD 475
>gnl|CDD|216227 pfam00982, Glyco_transf_20, Glycosyltransferase family 20. Members
of this family belong to glycosyl transferase family 20.
OtsA (Trehalose-6-phosphate synthase) is homologous to
regions in the subunits of yeast trehalose-6-phosphate
synthase/phosphate complex.
Length = 470
Score = 103 bits (260), Expect = 5e-27
Identities = 44/87 (50%), Positives = 58/87 (66%), Gaps = 2/87 (2%)
Query: 1 MNLVAKEFVACQINEPPGVLIVSPFAGAGEQMHE-ALICNPYEIDAAAEVIHRALTMPED 59
MNLVA E+VACQ + GVLI+S FAGA + +++ A++ NP++I+ AE I+ ALTM E+
Sbjct: 381 MNLVAYEYVACQ-QDRKGVLILSEFAGAAQSLNDGAILVNPWDIEEVAEAINEALTMSEE 439
Query: 60 ERTLRMNYLRKREKVHDVNYWMRSFLK 86
ER R L K HDV YW SFL
Sbjct: 440 ERQKRHRKLFKYISKHDVQYWAESFLS 466
>gnl|CDD|182249 PRK10117, PRK10117, trehalose-6-phosphate synthase; Provisional.
Length = 474
Score = 93.7 bits (233), Expect = 2e-23
Identities = 40/86 (46%), Positives = 52/86 (60%)
Query: 1 MNLVAKEFVACQINEPPGVLIVSPFAGAGEQMHEALICNPYEIDAAAEVIHRALTMPEDE 60
MNLVAKE+VA Q PGVL++S FAGA ++ ALI NPY+ D A + RALTMP E
Sbjct: 364 MNLVAKEYVAAQDPANPGVLVLSQFAGAANELTSALIVNPYDRDEVAAALDRALTMPLAE 423
Query: 61 RTLRMNYLRKREKVHDVNYWMRSFLK 86
R R + +D+N+W F+
Sbjct: 424 RISRHAEMLDVIVKNDINHWQECFIS 449
>gnl|CDD|215556 PLN03064, PLN03064, alpha,alpha-trehalose-phosphate synthase
(UDP-forming); Provisional.
Length = 934
Score = 74.4 bits (183), Expect = 2e-16
Identities = 37/95 (38%), Positives = 52/95 (54%), Gaps = 2/95 (2%)
Query: 1 MNLVAKEFVACQINEPPGVLIVSPFAGAGEQMHE-ALICNPYEIDAAAEVIHRALTMPED 59
MNLV+ EFVACQ + GVLI+S FAGA + + A++ NP+ I A I +AL MPE+
Sbjct: 472 MNLVSYEFVACQ-DSKKGVLILSEFAGAAQSLGAGAILVNPWNITEVAASIAQALNMPEE 530
Query: 60 ERTLRMNYLRKREKVHDVNYWMRSFLKGMGTLITE 94
ER R + H W +F+ + + E
Sbjct: 531 EREKRHRHNFMHVTTHTAQEWAETFVSELNDTVVE 565
>gnl|CDD|215555 PLN03063, PLN03063, alpha,alpha-trehalose-phosphate synthase
(UDP-forming); Provisional.
Length = 797
Score = 72.6 bits (178), Expect = 8e-16
Identities = 37/95 (38%), Positives = 53/95 (55%), Gaps = 2/95 (2%)
Query: 1 MNLVAKEFVACQINEPPGVLIVSPFAGAGEQMHE-ALICNPYEIDAAAEVIHRALTMPED 59
MNLV+ EFVACQ + GVL++S FAGAG+ + AL+ NP+ I + I AL M ++
Sbjct: 388 MNLVSYEFVACQKAKK-GVLVLSEFAGAGQSLGAGALLVNPWNITEVSSAIKEALNMSDE 446
Query: 60 ERTLRMNYLRKREKVHDVNYWMRSFLKGMGTLITE 94
ER R + + K H W F+ + +I E
Sbjct: 447 ERETRHRHNFQYVKTHSAQKWADDFMSELNDIIVE 481
>gnl|CDD|131451 TIGR02398, gluc_glyc_Psyn, glucosylglycerol-phosphate synthase.
Glucosylglycerol-phosphate synthase catalyzes the key
step in the biosynthesis of the osmolyte
glucosylglycerol. It is known in several cyanobacteria
and in Pseudomonas anguilliseptica. The enzyme is
closely related to the alpha,alpha-trehalose-phosphate
synthase, likewise involved in osmolyte biosynthesis, of
E. coli and many other bacteria. A close homolog from
Xanthomonas campestris is excluded from this model and
scores between trusted and noise.
Length = 487
Score = 65.3 bits (159), Expect = 2e-13
Identities = 36/87 (41%), Positives = 49/87 (56%), Gaps = 1/87 (1%)
Query: 1 MNLVAKEFVACQINEPPGVLIVSPFAGAGEQMHEALICNPYEIDAAAEVIHRALTMPEDE 60
+NLVAKE+VA Q GVL++S FAGA ++ AL+ NPY+ E I+ AL MP+ E
Sbjct: 394 LNLVAKEYVAAQ-GLLDGVLVLSEFAGAAVELKGALLTNPYDPVRMDETIYVALAMPKAE 452
Query: 61 RTLRMNYLRKREKVHDVNYWMRSFLKG 87
+ RM + +DV W FL
Sbjct: 453 QQARMREMFDAVNYYDVQRWADEFLAA 479
>gnl|CDD|177855 PLN02205, PLN02205, alpha,alpha-trehalose-phosphate synthase
[UDP-forming].
Length = 854
Score = 57.7 bits (139), Expect = 1e-10
Identities = 41/133 (30%), Positives = 60/133 (45%), Gaps = 19/133 (14%)
Query: 19 VLIVSPFAGAGEQMHEALICNPYEIDAAAEVIHRALTMPEDERTLRMNYLRKREKVHDVN 78
+L+VS F G + A+ NP+ IDA A+ + AL M E E+ LR + HDV
Sbjct: 480 MLVVSEFIGCSPSLSGAIRVNPWNIDAVADAMDSALEMAEPEKQLRHEKHYRYVSTHDVG 539
Query: 79 YWMRSFLKGMGTLITEDGDD--------------VLPTTMQPVTLEDFDEYLSKYIGTHE 124
YW RSFL+ + + L + +++E +S Y T
Sbjct: 540 YWARSFLQDLERTCRDHSRRRCWGIGFGLSFRVVALDPNFRKLSME---HIVSAYKRTTT 596
Query: 125 QAWALLLDYDGEL 137
+ A+LLDYDG L
Sbjct: 597 R--AILLDYDGTL 607
>gnl|CDD|100052 cd04646, LbH_Dynactin_6, Dynactin 6 (or subunit p27): Dynactin is a
major component of the activator complex that stimulates
dynein-mediated vesicle transport. Dynactin is a
heterocomplex of at least eight subunits, including a
150,000-MW protein called Glued, the actin-capping
protein Arp1, and dynamatin. In vitro binding
experiments show that dynactin enhances dynein-dependent
motility, possibly through interaction with microtubules
and vesicles. Subunit p27 is part of the pointed-end
subcomplex in dynactin that also includes p25, p26, and
Arp11. This subcomplex interacts with membranous
cargoes. p25 and p27 contain the imperfect tandem
repeats of a hexapeptide repeat motif
(X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed
parallel beta helix (LbH) structural domain. Proteins
containing hexapeptide repeats are often enzymes showing
acyltransferase activity.
Length = 164
Score = 30.8 bits (70), Expect = 0.13
Identities = 12/44 (27%), Positives = 23/44 (52%)
Query: 27 GAGEQMHEALICNPYEIDAAAEVIHRALTMPEDERTLRMNYLRK 70
GAG ++ + I + A+ + R T +TL++++LRK
Sbjct: 111 GAGCKLPSSEILPENTVIYGADCLRRTQTDRPKPQTLQLDFLRK 154
>gnl|CDD|99981 cd03809, GT1_mtfB_like, This family is most closely related to the
GT1 family of glycosyltransferases. mtfB
(mannosyltransferase B) in E. coli has been shown to
direct the growth of the O9-specific polysaccharide
chain. It transfers two mannoses into the position 3 of
the previously synthesized polysaccharide.
Length = 365
Score = 27.7 bits (62), Expect = 2.0
Identities = 11/30 (36%), Positives = 14/30 (46%)
Query: 35 ALICNPYEIDAAAEVIHRALTMPEDERTLR 64
AL +P + +A A I R L P LR
Sbjct: 315 ALYFDPLDPEALAAAIERLLEDPALREELR 344
>gnl|CDD|188522 TIGR04007, wcaI, colanic acid biosynthesis glycosyl transferase
WcaI. This gene is one of the glycosyl transferases
involved in the biosynthesis of colanic acid, an
exopolysaccharide expressed in Enterobacteraceae
species.
Length = 407
Score = 27.6 bits (61), Expect = 2.7
Identities = 13/39 (33%), Positives = 18/39 (46%)
Query: 35 ALICNPYEIDAAAEVIHRALTMPEDERTLRMNYLRKREK 73
A+ P +DA I +AL MP++ R R EK
Sbjct: 356 AVCVEPESVDALVAGIVQALAMPKNNTVAREYAERTLEK 394
>gnl|CDD|236877 PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional.
Length = 434
Score = 27.2 bits (61), Expect = 3.4
Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 24/72 (33%)
Query: 34 EALICNPYEIDAAA---------EVIHRA-------------LTMPEDERTLRMNYLRKR 71
E L+ +P E++A + +RA L PE R++ ++R R
Sbjct: 198 ERLLNDPVEVEAEPSRRERKKIHQWYYRADDLEHKTALLCHLLKQPEVTRSIV--FVRTR 255
Query: 72 EKVHDVNYWMRS 83
E+VH++ W+R
Sbjct: 256 ERVHELAGWLRK 267
>gnl|CDD|216609 pfam01619, Pro_dh, Proline dehydrogenase.
Length = 341
Score = 26.6 bits (59), Expect = 5.0
Identities = 11/43 (25%), Positives = 17/43 (39%), Gaps = 3/43 (6%)
Query: 42 EIDAAAEVIHRALTMPEDERTLRMNY---LRKREKVHDVNYWM 81
E A + + + D+ T MNY LR + + Y M
Sbjct: 213 ERKRAQVLGYEDPPVFTDKATTDMNYQCLLRLLLEGRNYIYPM 255
>gnl|CDD|226322 COG3800, COG3800, Predicted transcriptional regulator [General
function prediction only].
Length = 332
Score = 26.5 bits (59), Expect = 5.8
Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 42 EIDAAAEVIHRALTMPEDERTLRM-NYLRKREKVH 75
+D AAE + L MP + + LR+R +
Sbjct: 21 ALDEAAEELAAQLGMPGGDLAGALAARLRRRHGIT 55
>gnl|CDD|211335 cd02568, PseudoU_synth_PUS1_PUS2, Pseudouridine synthase, PUS1/
PUS2 like. This group consists of eukaryotic
pseudouridine synthases similar to Saccharomyces
cerevisiae Pus1p, S. cerevisiae Pus2p, Caenorhabditis
elegans Pus1p and human PUS1. Pseudouridine synthases
catalyze the isomerization of specific uridines in an
RNA molecule to pseudouridines (5-ribosyluracil, psi).
No cofactors are required. S. cerevisiae Pus1p catalyzes
the formation of psi34 and psi36 in the
intron-containing tRNAIle, psi35 in the
intron-containing tRNATyr, psi27 and/or psi28 in several
yeast cytoplasmic tRNAs and, psi44 in U2 small nuclear
RNA (U2 snRNA). The presence of the intron is required
for the formation of psi 34, 35 and 36. In addition S.
cerevisiae PUS1 makes are psi 26, 65 and 67. C. elegans
Pus1p does not modify psi44 in U2 snRNA. Mouse Pus1p
makes psi27/28 in pre- tRNASer , tRNAVal and tRNAIle,
psi 34/36 in tRNAIle and, psi 32 and potentially 67 in
tRNAVal. Psi44 in U2 snRNA and psi32 in tRNAs are
highly phylogenetically conserved. Psi
26,27,28,34,35,36,65 and 67 in tRNAs are less highly
conserved. Mouse Pus1p regulates nuclear receptor
activity through pseudouridylation of Steroid Receptor
RNA Activator. Missense mutation in human PUS1 causes
mitochondrial myopathy and sideroblastic anemia (MLASA).
Length = 245
Score = 26.0 bits (58), Expect = 7.1
Identities = 9/16 (56%), Positives = 13/16 (81%)
Query: 108 TLEDFDEYLSKYIGTH 123
TL+ F+E L +Y+GTH
Sbjct: 131 TLQRFNEILKEYVGTH 146
>gnl|CDD|173727 cd06613, STKc_MAP4K3_like, Catalytic domain of Mitogen-activated
protein kinase kinase kinase kinase-like Protein
Serine/Threonine Kinases. Serine/threonine kinases
(STKs), mitogen-activated protein kinase (MAPK) kinase
kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The MAP4K3-like
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. This subfamily includes MAP4K3, MAP4K1,
MAP4K2, MAP4K5, and related proteins. Vertebrate members
contain an N-terminal catalytic domain and a C-terminal
citron homology (CNH) regulatory domain, similar to
MAP4K4/6. MAP4Ks are involved in some MAPK signaling
pathways that are important in mediating cellular
responses to extracellular signals by activating a MAPK
kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK
cascade is activated either by a small GTP-binding
protein or by an adaptor protein, which transmits the
signal either directly to a MAP3K to start the triple
kinase core cascade or indirectly through a mediator
kinase, a MAP4K. MAP4K1, also called haematopoietic
progenitor kinase 1 (HPK1), is a hematopoietic-specific
STK involved in many cellular signaling cascades
including MAPK, antigen receptor, apoptosis, growth
factor, and cytokine signaling. It participates in the
regulation of T cell receptor signaling and T
cell-mediated immune responses. MAP4K2 was referred to
as germinal center (GC) kinase because of its preferred
location in GC B cells. MAP4K3 plays a role in the
nutrient-responsive pathway of mTOR (mammalian target of
rapamycin) signaling. It is required in the activation
of S6 kinase by amino acids and for the phosphorylation
of the mTOR-regulated inhibitor of eukaryotic initiation
factor 4E. MAP4K5, also called germinal center
kinase-related enzyme (GCKR), has been shown to activate
the MAPK c-Jun N-terminal kinase (JNK).
Length = 262
Score = 26.1 bits (58), Expect = 7.3
Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 26/71 (36%)
Query: 62 TLR-MNYLRKREKVHDVNYWMRSFLKGMGTLITEDGDDVLPTTMQPVTLEDF------DE 114
TL+ + YL + K+H R +KG L+TEDGD V L DF
Sbjct: 110 TLKGLAYLHETGKIH------RD-IKGANILLTEDGD---------VKLADFGVSAQLTA 153
Query: 115 YLSK---YIGT 122
++K +IGT
Sbjct: 154 TIAKRKSFIGT 164
>gnl|CDD|220992 pfam11130, TraC_F_IV, F pilus assembly Type-IV secretion system
for plasmid transfer. This family of TraC proteins is
conserved in Proteobacteria. TraC is a cytoplasmic,
peripheral membrane protein and is one of the proteins
encoded by the F transfer region of the conjugative
plasmid that is required for the assembly of F pilin
into the mature F pilus structure. F pili are
filamentous appendages that help establish the physical
contact between donor and recipient cells involved in
the conjugation process.
Length = 236
Score = 26.1 bits (58), Expect = 7.3
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 19 VLIVSPFAGAGEQMHEAL 36
V +SP GAGE + +AL
Sbjct: 31 VFELSPLGGAGESVRDAL 48
>gnl|CDD|227125 COG4786, FlgG, Flagellar basal body rod protein [Cell motility and
secretion].
Length = 265
Score = 25.7 bits (57), Expect = 9.0
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 89 GTLITEDGDDVLPTTMQPVTL 109
G L+T +G VL + P+T+
Sbjct: 126 GQLVTSNGYPVLDSGGNPITI 146
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.137 0.424
Gapped
Lambda K H
0.267 0.0751 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 7,646,373
Number of extensions: 708385
Number of successful extensions: 742
Number of sequences better than 10.0: 1
Number of HSP's gapped: 730
Number of HSP's successfully gapped: 31
Length of query: 140
Length of database: 10,937,602
Length adjustment: 87
Effective length of query: 53
Effective length of database: 7,078,804
Effective search space: 375176612
Effective search space used: 375176612
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (24.5 bits)