RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy9705
         (140 letters)



>d1uqta_ c.87.1.6 (A:) Trehalose-6-phosphate synthase, OtsA
           {Escherichia coli [TaxId: 562]}
          Length = 456

 Score = 97.3 bits (241), Expect = 3e-25
 Identities = 39/88 (44%), Positives = 52/88 (59%)

Query: 1   MNLVAKEFVACQINEPPGVLIVSPFAGAGEQMHEALICNPYEIDAAAEVIHRALTMPEDE 60
           MNLVAKE+VA Q    PGVL++S FAGA  ++  ALI NPY+ D  A  + RALTM   E
Sbjct: 363 MNLVAKEYVAAQDPANPGVLVLSQFAGAANELTSALIVNPYDRDEVAAALDRALTMSLAE 422

Query: 61  RTLRMNYLRKREKVHDVNYWMRSFLKGM 88
           R  R   +      +D+N+W   F+  +
Sbjct: 423 RISRHAEMLDVIVKNDINHWQECFISDL 450


>g1htr.1 b.50.1.2 (P:,B:) Pepsin(ogen) {Human (Homo sapiens),
           progastricsin (pepsinogen C) [TaxId: 9606]}
          Length = 372

 Score = 26.9 bits (58), Expect = 1.1
 Identities = 18/79 (22%), Positives = 28/79 (35%), Gaps = 7/79 (8%)

Query: 68  LRK----REKVHDVNYWMRSFLKGMGTLITEDGDDVLPTTMQPVTLEDFDEYLSK-YIGT 122
           L+K    RE + +                 +     L  T +P+   D   Y  +  IGT
Sbjct: 7   LKKFKSIRETMKEKGLLGEFLRTHKYDPAWKYRFGDLSVTYEPMAYMDA-AYFGEISIGT 65

Query: 123 HEQAWALLLDY-DGELWLP 140
             Q + +L D     LW+P
Sbjct: 66  PPQNFLVLFDTGSSNLWVP 84


>d1ejda_ d.68.2.2 (A:) UDP-N-acetylglucosamine enolpyruvyl
           transferase (EPT, MurA, MurZ) {Enterobacter cloacae
           [TaxId: 550]}
          Length = 419

 Score = 26.0 bits (56), Expect = 1.9
 Identities = 5/38 (13%), Positives = 11/38 (28%)

Query: 62  TLRMNYLRKREKVHDVNYWMRSFLKGMGTLITEDGDDV 99
            +        E + +  +     L  MG     + + V
Sbjct: 315 LVAEGTGVITETIFENRFMHVPELIRMGAHAEIESNTV 352


>d1uf2a_ e.28.1.2 (A:) RDV p3 {Rice dwarf virus [TaxId: 10991]}
          Length = 967

 Score = 25.3 bits (55), Expect = 3.3
 Identities = 11/45 (24%), Positives = 19/45 (42%), Gaps = 4/45 (8%)

Query: 77  VNYWMRSFLKGMGTLITEDGDDVLPTTMQPVTLEDFDEYLSKYIG 121
           VN   +  L+     ITE+G    P  ++ +   DF  +L  +  
Sbjct: 823 VNMRAKFDLQ----FITEEGGYSKPPNVKKLMFSDFLSFLDSHKS 863


>d1euea_ d.120.1.1 (A:) Cytochrome b5 {Rat (Rattus norvegicus)
           [TaxId: 10116]}
          Length = 86

 Score = 24.1 bits (52), Expect = 4.2
 Identities = 12/53 (22%), Positives = 21/53 (39%), Gaps = 1/53 (1%)

Query: 71  REKVHDVNYWMRSFLKGMGTLITEDGDDVLPTTMQPVTLEDFDEYLSKY-IGT 122
             +V+D+  ++     G   L+ + G D   +        D  E L +Y IG 
Sbjct: 26  HGRVYDITRFLSEHPGGEEILLEQAGADATESFEDIGHSPDAREMLKQYYIGD 78


>d2ewoa1 d.126.1.6 (A:2-370) Agmatine iminohydrolase {Streptococcus
           mutans [TaxId: 1309]}
          Length = 369

 Score = 23.9 bits (51), Expect = 9.7
 Identities = 14/68 (20%), Positives = 25/68 (36%), Gaps = 9/68 (13%)

Query: 69  RKREKVHDVNYWMRSFLKGMGTLITEDGDDVLPTTMQ---------PVTLEDFDEYLSKY 119
           RK  ++  V+ +        G  I  DG+  +  T            +T ED ++ L  Y
Sbjct: 141 RKVCEIEGVDSYKTKDFVLEGGSIHVDGEGTVLVTEMCLLHPSRNPHLTKEDIEDKLKDY 200

Query: 120 IGTHEQAW 127
           +   +  W
Sbjct: 201 LNCVKVLW 208


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.137    0.424 

Gapped
Lambda     K      H
   0.267   0.0429    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 574,186
Number of extensions: 26409
Number of successful extensions: 106
Number of sequences better than 10.0: 1
Number of HSP's gapped: 106
Number of HSP's successfully gapped: 16
Length of query: 140
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 63
Effective length of database: 1,350,386
Effective search space: 85074318
Effective search space used: 85074318
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.0 bits)