Query psy9706
Match_columns 39
No_of_seqs 34 out of 36
Neff 2.7
Searched_HMMs 46136
Date Fri Aug 16 17:33:24 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9706.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9706hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF10226 DUF2216: Uncharacteri 93.9 0.095 2.1E-06 35.0 3.6 22 6-27 52-73 (195)
2 PF14775 NYD-SP28_assoc: Sperm 92.7 0.18 3.9E-06 27.5 2.9 21 3-23 34-54 (60)
3 PF06632 XRCC4: DNA double-str 91.4 0.66 1.4E-05 32.3 5.1 33 5-37 140-172 (342)
4 PF04880 NUDE_C: NUDE protein, 91.3 0.15 3.3E-06 32.7 1.9 22 3-24 15-39 (166)
5 PRK10265 chaperone-modulator p 91.2 0.45 9.7E-06 27.3 3.6 26 5-37 74-99 (101)
6 PF02183 HALZ: Homeobox associ 88.2 1.7 3.7E-05 22.5 4.1 26 6-31 16-41 (45)
7 smart00338 BRLZ basic region l 87.7 2.7 5.8E-05 21.9 4.8 31 5-35 29-59 (65)
8 PF06005 DUF904: Protein of un 87.1 2.6 5.6E-05 23.6 4.6 28 7-34 37-64 (72)
9 PF11382 DUF3186: Protein of u 87.1 1.7 3.7E-05 29.1 4.5 28 6-33 36-63 (308)
10 PF10883 DUF2681: Protein of u 86.4 2.9 6.3E-05 24.6 4.8 30 6-35 27-56 (87)
11 PRK09413 IS2 repressor TnpA; R 86.0 2.7 5.8E-05 24.3 4.5 31 5-39 74-104 (121)
12 smart00340 HALZ homeobox assoc 85.6 0.94 2E-05 24.5 2.3 16 11-26 14-29 (44)
13 KOG4196|consensus 85.3 1.4 3E-05 28.3 3.3 25 3-27 82-106 (135)
14 PF09311 Rab5-bind: Rabaptin-l 85.2 0.26 5.6E-06 30.6 -0.1 30 3-32 23-52 (181)
15 PF04977 DivIC: Septum formati 84.9 2.3 4.9E-05 21.9 3.5 22 5-26 27-48 (80)
16 COG3074 Uncharacterized protei 84.5 2.1 4.5E-05 25.4 3.6 24 6-29 22-45 (79)
17 PF14645 Chibby: Chibby family 83.9 1.3 2.9E-05 26.6 2.6 21 6-26 68-88 (116)
18 PF14077 WD40_alt: Alternative 83.8 1.8 3.9E-05 23.7 2.9 22 5-26 21-42 (48)
19 PF04880 NUDE_C: NUDE protein, 83.2 0.5 1.1E-05 30.3 0.6 24 2-25 24-47 (166)
20 PRK14127 cell division protein 82.4 3.5 7.6E-05 24.9 4.0 28 6-33 41-68 (109)
21 PF13942 Lipoprotein_20: YfhG 82.3 3.5 7.6E-05 27.4 4.3 32 7-38 128-159 (179)
22 PRK00888 ftsB cell division pr 82.2 3.3 7.2E-05 24.2 3.8 27 6-32 31-57 (105)
23 PRK00888 ftsB cell division pr 82.1 5.7 0.00012 23.2 4.8 24 3-26 35-58 (105)
24 PRK10722 hypothetical protein; 81.6 5.3 0.00012 27.5 5.1 31 8-38 175-205 (247)
25 PRK13922 rod shape-determining 81.2 6.6 0.00014 25.1 5.2 23 4-26 71-93 (276)
26 PRK10884 SH3 domain-containing 80.1 5.2 0.00011 25.9 4.5 25 9-33 132-156 (206)
27 cd00068 GGL G protein gamma su 79.8 4.4 9.5E-05 21.4 3.5 32 6-37 3-34 (57)
28 TIGR02209 ftsL_broad cell divi 79.8 5.3 0.00011 21.2 3.8 24 4-27 33-56 (85)
29 PF04728 LPP: Lipoprotein leuc 79.4 7.4 0.00016 21.5 4.4 28 6-33 21-48 (56)
30 PF06005 DUF904: Protein of un 78.9 9.2 0.0002 21.4 5.1 22 5-26 21-42 (72)
31 smart00224 GGL G protein gamma 78.2 4.1 8.9E-05 21.9 3.1 32 6-37 3-34 (63)
32 PRK15422 septal ring assembly 77.9 6.9 0.00015 23.0 4.2 22 6-27 22-43 (79)
33 PF07716 bZIP_2: Basic region 77.8 6.3 0.00014 20.1 3.6 22 5-26 28-49 (54)
34 PF04340 DUF484: Protein of un 77.6 7.7 0.00017 24.2 4.6 20 8-27 46-65 (225)
35 PF12325 TMF_TATA_bd: TATA ele 77.2 10 0.00023 22.9 5.0 31 6-36 27-57 (120)
36 PF10482 CtIP_N: Tumour-suppre 76.0 2.6 5.7E-05 26.6 2.2 20 6-25 100-119 (120)
37 TIGR00219 mreC rod shape-deter 75.9 7 0.00015 26.0 4.3 16 6-21 70-85 (283)
38 KOG0977|consensus 75.2 6.7 0.00014 29.4 4.4 32 2-33 162-193 (546)
39 PF14817 HAUS5: HAUS augmin-li 74.6 7.1 0.00015 29.4 4.4 31 2-32 79-109 (632)
40 cd07429 Cby_like Chibby, a nuc 74.3 3.6 7.8E-05 25.0 2.4 19 8-26 71-89 (108)
41 PF09744 Jnk-SapK_ap_N: JNK_SA 73.8 6.2 0.00013 24.9 3.5 34 3-36 90-123 (158)
42 PRK10884 SH3 domain-containing 73.5 9.3 0.0002 24.8 4.3 27 7-33 137-163 (206)
43 PF00631 G-gamma: GGL domain; 72.8 11 0.00023 20.0 3.8 34 4-37 4-37 (68)
44 PF06156 DUF972: Protein of un 72.0 16 0.00035 21.7 4.8 30 6-35 26-55 (107)
45 PF06785 UPF0242: Uncharacteri 71.7 11 0.00024 27.7 4.8 27 3-29 128-154 (401)
46 PF14916 CCDC92: Coiled-coil d 71.6 3.4 7.3E-05 23.0 1.7 17 6-22 25-41 (60)
47 PRK15422 septal ring assembly 71.1 16 0.00035 21.5 4.6 31 5-35 35-72 (79)
48 PF04999 FtsL: Cell division p 70.8 11 0.00023 20.7 3.6 24 4-27 44-67 (97)
49 PF04977 DivIC: Septum formati 70.1 13 0.00028 19.0 4.6 32 4-35 19-50 (80)
50 PF13591 MerR_2: MerR HTH fami 69.8 6.3 0.00014 21.8 2.5 18 5-22 66-83 (84)
51 PRK14872 rod shape-determining 69.5 11 0.00024 26.5 4.3 22 6-27 61-82 (337)
52 PF14662 CCDC155: Coiled-coil 68.6 17 0.00037 24.2 4.8 30 6-35 5-34 (193)
53 KOG4378|consensus 68.4 4.7 0.0001 31.2 2.4 18 5-22 653-670 (673)
54 PF07412 Geminin: Geminin; In 68.3 9.5 0.00021 25.4 3.6 19 6-24 136-154 (200)
55 PF11285 DUF3086: Protein of u 67.8 14 0.00031 26.1 4.5 37 2-38 11-55 (283)
56 PF15619 Lebercilin: Ciliary p 67.4 17 0.00038 23.3 4.5 30 5-34 64-93 (194)
57 PRK14872 rod shape-determining 67.3 14 0.00031 26.0 4.4 26 10-35 58-83 (337)
58 PF15294 Leu_zip: Leucine zipp 66.7 12 0.00026 25.9 3.9 22 6-27 129-150 (278)
59 COG1792 MreC Cell shape-determ 65.8 9 0.0002 25.6 3.1 20 5-24 86-105 (284)
60 TIGR03689 pup_AAA proteasome A 65.0 21 0.00045 26.1 5.0 32 4-35 3-34 (512)
61 PF07139 DUF1387: Protein of u 64.6 22 0.00047 25.0 4.9 37 1-37 199-235 (302)
62 TIGR00219 mreC rod shape-deter 64.3 25 0.00055 23.3 5.0 19 10-28 67-85 (283)
63 PHA03386 P10 fibrous body prot 63.6 19 0.00042 21.8 4.0 25 6-30 23-47 (94)
64 PF13815 Dzip-like_N: Iguana/D 63.5 27 0.00058 20.3 4.7 29 6-34 84-112 (118)
65 PF07334 IFP_35_N: Interferon- 63.4 18 0.0004 20.9 3.7 22 6-27 4-25 (76)
66 PF13600 DUF4140: N-terminal d 63.4 23 0.00051 19.5 4.5 29 5-33 73-101 (104)
67 PF11559 ADIP: Afadin- and alp 62.0 24 0.00052 20.7 4.1 19 4-22 54-72 (151)
68 KOG4005|consensus 62.0 19 0.00042 25.6 4.3 24 5-28 93-116 (292)
69 PRK10361 DNA recombination pro 61.6 19 0.00042 26.4 4.4 32 2-33 165-196 (475)
70 PF12123 Amidase02_C: N-acetyl 61.0 3.8 8.2E-05 21.6 0.5 11 29-39 26-36 (45)
71 PF09755 DUF2046: Uncharacteri 58.7 23 0.00049 25.0 4.2 24 7-30 259-282 (310)
72 PF07106 TBPIP: Tat binding pr 58.0 39 0.00084 20.3 4.9 30 6-35 76-105 (169)
73 KOG0483|consensus 57.9 21 0.00045 23.4 3.7 29 5-33 115-143 (198)
74 PF08172 CASP_C: CASP C termin 57.3 14 0.0003 24.6 2.8 20 6-25 97-116 (248)
75 PF03980 Nnf1: Nnf1 ; InterPr 57.0 29 0.00064 19.5 3.8 25 3-27 81-105 (109)
76 PRK02195 V-type ATP synthase s 56.5 42 0.00091 21.4 4.8 30 3-32 32-61 (201)
77 PRK10963 hypothetical protein; 56.3 35 0.00077 21.7 4.5 20 8-27 43-62 (223)
78 PRK10803 tol-pal system protei 56.2 34 0.00074 22.4 4.5 22 7-28 59-80 (263)
79 PF14197 Cep57_CLD_2: Centroso 55.9 34 0.00073 18.9 4.7 20 6-25 2-21 (69)
80 PF00170 bZIP_1: bZIP transcri 55.7 28 0.00061 18.0 4.9 27 6-32 30-56 (64)
81 PHA00327 minor capsid protein 54.9 15 0.00032 24.7 2.7 22 4-25 117-138 (187)
82 PF12808 Mto2_bdg: Micro-tubul 54.3 25 0.00055 19.0 3.1 23 4-26 24-46 (52)
83 PF10212 TTKRSYEDQ: Predicted 53.0 26 0.00057 26.3 3.9 35 3-37 456-494 (518)
84 TIGR03752 conj_TIGR03752 integ 52.4 32 0.00069 25.6 4.2 18 6-23 77-94 (472)
85 KOG2070|consensus 52.4 34 0.00073 26.7 4.5 29 6-34 620-651 (661)
86 PF13747 DUF4164: Domain of un 52.2 43 0.00094 19.1 4.7 32 4-35 34-65 (89)
87 PRK13169 DNA replication intia 51.5 52 0.0011 19.8 4.7 27 6-32 26-52 (110)
88 PF07544 Med9: RNA polymerase 50.9 21 0.00045 19.9 2.5 19 6-24 56-74 (83)
89 PF08961 DUF1875: Domain of un 50.4 5.2 0.00011 27.7 0.0 20 6-25 140-159 (243)
90 TIGR02268 Myxococcus xanthus p 49.6 20 0.00042 25.0 2.7 23 5-27 134-156 (295)
91 PF02183 HALZ: Homeobox associ 49.3 37 0.0008 17.5 5.2 32 5-36 8-39 (45)
92 PF12718 Tropomyosin_1: Tropom 49.3 59 0.0013 19.8 4.7 31 5-35 31-61 (143)
93 KOG2577|consensus 49.1 58 0.0013 23.5 5.0 33 5-37 147-179 (354)
94 PF03962 Mnd1: Mnd1 family; I 48.6 68 0.0015 20.3 5.0 25 2-26 103-127 (188)
95 TIGR02449 conserved hypothetic 48.2 49 0.0011 18.5 5.0 30 5-34 24-53 (65)
96 PF05812 Herpes_BLRF2: Herpesv 48.0 23 0.0005 22.0 2.6 21 5-25 6-26 (118)
97 PF11464 Rbsn: Rabenosyn Rab b 47.7 29 0.00062 18.1 2.6 18 9-26 22-39 (42)
98 PF09726 Macoilin: Transmembra 47.5 59 0.0013 24.7 5.1 33 3-35 546-581 (697)
99 KOG2129|consensus 47.4 44 0.00096 25.6 4.4 31 3-33 254-284 (552)
100 PHA03155 hypothetical protein; 47.3 22 0.00048 22.2 2.4 19 6-24 12-30 (115)
101 TIGR02894 DNA_bind_RsfA transc 47.2 72 0.0016 20.7 4.9 18 7-24 109-126 (161)
102 PF14802 TMEM192: TMEM192 fami 47.1 18 0.0004 24.0 2.2 16 11-26 218-233 (236)
103 KOG0982|consensus 46.1 14 0.00031 27.9 1.7 23 4-26 405-427 (502)
104 PF04849 HAP1_N: HAP1 N-termin 45.1 35 0.00076 24.0 3.4 23 5-27 163-185 (306)
105 PF05103 DivIVA: DivIVA protei 45.0 10 0.00022 21.3 0.6 22 7-28 30-51 (131)
106 PF01166 TSC22: TSC-22/dip/bun 45.0 48 0.001 18.7 3.3 20 6-25 18-37 (59)
107 PF14662 CCDC155: Coiled-coil 44.1 61 0.0013 21.6 4.3 28 6-33 64-91 (193)
108 KOG1003|consensus 44.1 60 0.0013 22.0 4.3 30 8-37 3-32 (205)
109 PHA03162 hypothetical protein; 43.7 27 0.00058 22.4 2.4 21 5-25 16-36 (135)
110 KOG4119|consensus 43.5 63 0.0014 18.5 4.8 33 5-37 10-42 (71)
111 KOG2077|consensus 43.2 67 0.0014 25.7 4.9 34 4-37 352-398 (832)
112 PF12711 Kinesin-relat_1: Kine 43.1 28 0.00061 20.4 2.3 11 5-15 27-37 (86)
113 PF10458 Val_tRNA-synt_C: Valy 42.9 52 0.0011 17.3 4.3 27 7-33 2-28 (66)
114 PF07989 Microtub_assoc: Micro 42.7 61 0.0013 18.1 4.2 27 6-32 47-73 (75)
115 PF11932 DUF3450: Protein of u 42.7 88 0.0019 19.9 4.9 23 6-28 60-82 (251)
116 PF08172 CASP_C: CASP C termin 42.2 46 0.001 22.1 3.5 21 4-24 109-129 (248)
117 PF07058 Myosin_HC-like: Myosi 42.2 62 0.0014 23.6 4.3 30 3-33 116-145 (351)
118 PF08826 DMPK_coil: DMPK coile 42.2 60 0.0013 17.8 5.5 33 2-34 11-43 (61)
119 PF13942 Lipoprotein_20: YfhG 42.1 82 0.0018 21.0 4.6 33 2-34 105-137 (179)
120 PF05679 CHGN: Chondroitin N-a 41.7 55 0.0012 23.3 4.0 30 3-32 77-106 (499)
121 KOG3654|consensus 41.7 33 0.00072 26.9 3.1 24 2-25 409-432 (708)
122 PRK10803 tol-pal system protei 41.3 85 0.0018 20.5 4.6 30 5-34 64-93 (263)
123 KOG0646|consensus 40.3 77 0.0017 23.9 4.7 31 3-33 429-459 (476)
124 PF01486 K-box: K-box region; 40.3 51 0.0011 18.3 3.0 19 5-23 15-33 (100)
125 PF01025 GrpE: GrpE; InterPro 39.8 78 0.0017 18.5 5.1 28 6-33 22-49 (165)
126 PF06305 DUF1049: Protein of u 39.7 54 0.0012 16.6 3.6 20 6-25 45-64 (68)
127 TIGR03752 conj_TIGR03752 integ 39.6 56 0.0012 24.4 3.8 22 6-27 70-91 (472)
128 PF07439 DUF1515: Protein of u 39.6 50 0.0011 20.6 3.1 20 6-25 12-31 (112)
129 cd04766 HTH_HspR Helix-Turn-He 39.5 48 0.001 17.9 2.8 19 6-24 69-87 (91)
130 COG5509 Uncharacterized small 39.4 63 0.0014 18.6 3.3 27 5-32 35-61 (65)
131 PF15188 CCDC-167: Coiled-coil 39.2 26 0.00057 20.5 1.8 14 7-20 55-68 (85)
132 PF06990 Gal-3-0_sulfotr: Gala 38.5 45 0.00098 23.4 3.1 20 6-25 319-338 (402)
133 PF12896 Apc4: Anaphase-promot 37.7 94 0.002 18.8 4.5 33 7-39 164-196 (210)
134 KOG4196|consensus 37.5 1.1E+02 0.0023 19.7 4.5 30 3-32 75-104 (135)
135 PRK09039 hypothetical protein; 36.9 97 0.0021 21.2 4.4 28 5-32 140-167 (343)
136 PF09730 BicD: Microtubule-ass 36.6 62 0.0013 25.1 3.8 26 8-33 120-145 (717)
137 KOG4571|consensus 36.5 1E+02 0.0022 21.9 4.6 29 3-31 249-277 (294)
138 PF03904 DUF334: Domain of unk 36.3 1.1E+02 0.0024 21.0 4.6 35 3-37 114-148 (230)
139 KOG0612|consensus 36.1 83 0.0018 26.5 4.6 36 2-39 674-709 (1317)
140 COG2841 Uncharacterized protei 36.0 91 0.002 18.2 3.7 24 8-31 45-68 (72)
141 PF01812 5-FTHF_cyc-lig: 5-for 35.7 91 0.002 18.5 3.8 35 4-38 1-37 (186)
142 PRK14164 heat shock protein Gr 35.5 1.2E+02 0.0027 20.1 4.7 25 6-30 81-105 (218)
143 PF05791 Bacillus_HBL: Bacillu 35.1 1.1E+02 0.0024 18.9 5.1 34 3-36 104-137 (184)
144 PF07888 CALCOCO1: Calcium bin 35.1 1.3E+02 0.0028 22.9 5.1 28 4-31 159-186 (546)
145 PF07407 Seadorna_VP6: Seadorn 35.1 70 0.0015 23.8 3.7 17 10-26 33-49 (420)
146 PF03148 Tektin: Tektin family 35.0 1.3E+02 0.0029 20.7 4.9 30 6-35 321-350 (384)
147 PRK14161 heat shock protein Gr 32.8 1.3E+02 0.0029 19.1 4.7 22 6-27 30-51 (178)
148 PRK15396 murein lipoprotein; P 32.7 1E+02 0.0022 17.6 4.2 26 7-32 44-69 (78)
149 COG1579 Zn-ribbon protein, pos 32.6 1.6E+02 0.0034 19.9 4.9 31 2-32 103-133 (239)
150 PF12709 Kinetocho_Slk19: Cent 32.5 1.1E+02 0.0024 18.1 3.7 23 6-28 53-75 (87)
151 TIGR02231 conserved hypothetic 32.2 1.3E+02 0.0027 21.1 4.5 28 5-32 74-101 (525)
152 COG3879 Uncharacterized protei 31.8 1.7E+02 0.0037 20.1 5.0 32 4-35 52-83 (247)
153 PF12037 DUF3523: Domain of un 31.7 1.8E+02 0.0039 20.2 5.2 23 15-37 131-153 (276)
154 PF14389 Lzipper-MIP1: Leucine 31.6 64 0.0014 18.2 2.5 16 2-17 8-23 (88)
155 PF09544 DUF2381: Protein of u 31.0 82 0.0018 21.3 3.4 21 6-26 131-151 (289)
156 PF10224 DUF2205: Predicted co 31.0 73 0.0016 18.3 2.7 17 8-24 43-59 (80)
157 COG3851 UhpB Signal transducti 30.9 58 0.0013 24.7 2.8 26 8-33 268-296 (497)
158 PF07321 YscO: Type III secret 30.1 1.4E+02 0.0031 18.6 4.3 28 6-33 71-98 (152)
159 KOG4036|consensus 30.1 64 0.0014 22.4 2.7 29 9-37 101-129 (236)
160 KOG3819|consensus 30.0 34 0.00073 26.0 1.5 18 9-26 86-103 (513)
161 KOG4005|consensus 30.0 96 0.0021 22.1 3.6 24 6-29 101-124 (292)
162 PRK05892 nucleoside diphosphat 30.0 1.2E+02 0.0026 18.7 3.8 22 4-25 13-34 (158)
163 PF12548 DUF3740: Sulfatase pr 29.6 91 0.002 19.5 3.2 22 2-23 106-127 (145)
164 PRK14142 heat shock protein Gr 29.3 1.7E+02 0.0037 19.7 4.6 24 5-28 43-66 (223)
165 PF02370 M: M protein repeat; 28.8 71 0.0015 14.7 2.9 18 4-21 3-20 (21)
166 PRK14155 heat shock protein Gr 28.8 1.7E+02 0.0038 19.1 4.7 23 6-28 24-46 (208)
167 PRK13729 conjugal transfer pil 28.6 60 0.0013 24.2 2.6 22 4-25 99-120 (475)
168 PF01527 HTH_Tnp_1: Transposas 28.4 17 0.00036 18.4 -0.2 15 6-20 62-76 (76)
169 KOG1853|consensus 28.0 1E+02 0.0022 22.4 3.5 24 3-26 158-181 (333)
170 PF15450 DUF4631: Domain of un 28.0 1.7E+02 0.0036 22.4 4.8 29 5-33 23-51 (531)
171 PF15066 CAGE1: Cancer-associa 27.8 1.6E+02 0.0035 22.6 4.7 33 3-35 412-444 (527)
172 KOG4643|consensus 27.5 1.3E+02 0.0028 25.2 4.4 29 7-35 262-290 (1195)
173 PRK13710 plasmid maintenance p 27.1 1.2E+02 0.0027 16.9 4.8 30 6-37 31-60 (72)
174 PRK11239 hypothetical protein; 26.8 1.6E+02 0.0036 19.9 4.2 23 6-28 187-209 (215)
175 PF02996 Prefoldin: Prefoldin 26.7 1.2E+02 0.0026 16.6 4.7 34 3-36 85-118 (120)
176 PF10845 DUF2576: Protein of u 26.6 1.1E+02 0.0025 16.6 2.9 25 3-27 12-36 (48)
177 PF04799 Fzo_mitofusin: fzo-li 26.5 1.9E+02 0.0041 18.8 4.5 30 4-34 122-151 (171)
178 COG1344 FlgL Flagellin and rel 26.4 84 0.0018 21.1 2.8 20 3-22 106-125 (360)
179 PF13870 DUF4201: Domain of un 26.2 1.6E+02 0.0034 17.8 4.6 31 7-37 4-34 (177)
180 PF05769 DUF837: Protein of un 26.2 1.3E+02 0.0028 19.1 3.5 22 9-30 70-94 (181)
181 PF08227 DASH_Hsk3: DASH compl 26.0 1.1E+02 0.0024 16.0 4.3 31 2-32 2-32 (45)
182 PF08838 DUF1811: Protein of u 26.0 89 0.0019 19.1 2.6 15 5-19 10-24 (102)
183 PF04849 HAP1_N: HAP1 N-termin 25.5 1.7E+02 0.0038 20.6 4.3 29 5-33 216-244 (306)
184 PRK14147 heat shock protein Gr 25.4 1.8E+02 0.004 18.3 4.7 22 6-27 29-50 (172)
185 PF05308 Mito_fiss_reg: Mitoch 25.2 81 0.0018 21.2 2.5 17 5-21 125-141 (253)
186 PRK14157 heat shock protein Gr 25.2 2.2E+02 0.0048 19.2 4.7 25 5-29 87-111 (227)
187 KOG3119|consensus 25.1 2.1E+02 0.0046 19.0 4.7 27 11-37 224-250 (269)
188 PRK14154 heat shock protein Gr 24.9 2.1E+02 0.0046 18.9 4.7 21 7-27 64-84 (208)
189 PRK14151 heat shock protein Gr 24.8 1.9E+02 0.0042 18.3 4.7 23 6-28 31-53 (176)
190 PF06810 Phage_GP20: Phage min 24.7 1.8E+02 0.0039 17.9 4.5 28 6-33 55-82 (155)
191 PLN03188 kinesin-12 family pro 24.6 2E+02 0.0042 24.4 4.9 20 4-23 1168-1187(1320)
192 PF07061 Swi5: Swi5; InterPro 24.4 1.5E+02 0.0032 16.8 3.9 27 5-31 3-29 (83)
193 PF10018 Med4: Vitamin-D-recep 24.2 1.8E+02 0.004 17.9 4.8 29 6-34 26-54 (188)
194 PRK14156 heat shock protein Gr 24.0 2.1E+02 0.0045 18.4 4.7 23 6-28 38-60 (177)
195 COG4951 Uncharacterized protei 23.8 66 0.0014 23.5 2.0 18 5-22 4-21 (361)
196 COG1729 Uncharacterized protei 23.6 1.7E+02 0.0037 20.0 3.9 26 6-32 67-92 (262)
197 PRK14163 heat shock protein Gr 23.5 2.3E+02 0.005 18.8 4.7 23 6-28 51-73 (214)
198 PF02403 Seryl_tRNA_N: Seryl-t 23.3 1.4E+02 0.0031 16.4 4.8 33 4-36 69-101 (108)
199 KOG4657|consensus 23.1 1E+02 0.0023 21.5 2.8 21 6-26 97-117 (246)
200 PF05837 CENP-H: Centromere pr 23.0 1.6E+02 0.0036 16.9 5.0 30 5-34 13-42 (106)
201 KOG1962|consensus 22.9 1.8E+02 0.0038 19.6 3.8 27 7-33 149-175 (216)
202 PF15035 Rootletin: Ciliary ro 22.9 2.1E+02 0.0046 18.2 5.0 26 7-32 86-111 (182)
203 PF13863 DUF4200: Domain of un 22.8 1.5E+02 0.0033 16.5 5.2 31 3-33 75-105 (126)
204 PF08647 BRE1: BRE1 E3 ubiquit 22.7 1.6E+02 0.0034 16.6 3.7 20 1-20 51-70 (96)
205 PF05557 MAD: Mitotic checkpoi 22.6 2.3E+02 0.0051 20.9 4.6 29 6-34 507-535 (722)
206 KOG2297|consensus 22.6 52 0.0011 24.4 1.3 14 26-39 391-404 (412)
207 COG4942 Membrane-bound metallo 22.3 2.9E+02 0.0062 20.4 5.0 32 3-34 60-91 (420)
208 PF04340 DUF484: Protein of un 22.1 2.1E+02 0.0046 17.8 5.4 34 5-38 50-83 (225)
209 PRK14160 heat shock protein Gr 22.0 2.5E+02 0.0054 18.6 4.6 20 7-26 59-78 (211)
210 PF11594 Med28: Mediator compl 21.8 2E+02 0.0044 17.5 3.6 22 14-35 40-61 (106)
211 COG5230 Uncharacterized conser 21.6 1.1E+02 0.0025 20.6 2.7 22 6-27 32-54 (194)
212 COG5570 Uncharacterized small 21.6 93 0.002 17.5 1.9 16 11-26 35-50 (57)
213 PRK14153 heat shock protein Gr 21.0 2.5E+02 0.0054 18.3 4.7 23 6-28 44-66 (194)
214 PRK14139 heat shock protein Gr 20.7 2.5E+02 0.0054 18.1 4.7 23 6-28 43-65 (185)
215 KOG0288|consensus 20.7 2.7E+02 0.0058 21.1 4.7 23 6-28 52-74 (459)
216 PF10146 zf-C4H2: Zinc finger- 20.4 2.7E+02 0.0059 18.4 5.0 29 3-31 61-89 (230)
217 PF11172 DUF2959: Protein of u 20.3 2.8E+02 0.0061 18.6 4.9 33 5-37 166-198 (201)
218 PF05377 FlaC_arch: Flagella a 20.2 1.7E+02 0.0037 16.0 4.4 29 7-35 12-40 (55)
219 KOG4797|consensus 20.2 1.5E+02 0.0033 18.8 2.9 31 6-36 71-106 (123)
220 PF05667 DUF812: Protein of un 20.2 2.4E+02 0.0051 21.2 4.3 24 3-26 420-443 (594)
221 PF09726 Macoilin: Transmembra 20.1 2.6E+02 0.0057 21.4 4.5 24 6-29 457-480 (697)
222 PF06657 Cep57_MT_bd: Centroso 20.0 1.8E+02 0.0039 16.2 3.0 19 6-24 21-39 (79)
No 1
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=93.89 E-value=0.095 Score=35.03 Aligned_cols=22 Identities=36% Similarity=0.585 Sum_probs=18.9
Q ss_pred hHHHHHHHHHHHhHHHHHHHHH
Q psy9706 6 TLEEELKDLREENKKLKEESQN 27 (39)
Q Consensus 6 ~Lq~Ev~~LRe~N~RLqeESqs 27 (39)
..-.||+.|++.|+|||++.+.
T Consensus 52 ~hl~EIR~LKe~NqkLqedNqE 73 (195)
T PF10226_consen 52 QHLNEIRGLKEVNQKLQEDNQE 73 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4457999999999999999864
No 2
>PF14775 NYD-SP28_assoc: Sperm tail C-terminal domain
Probab=92.69 E-value=0.18 Score=27.45 Aligned_cols=21 Identities=29% Similarity=0.498 Sum_probs=19.3
Q ss_pred hHhhHHHHHHHHHHHhHHHHH
Q psy9706 3 RRHTLEEELKDLREENKKLKE 23 (39)
Q Consensus 3 ~r~~Lq~Ev~~LRe~N~RLqe 23 (39)
+|+.|..|+.+|+++|..|+.
T Consensus 34 ~R~~l~~e~~~L~~qN~eLr~ 54 (60)
T PF14775_consen 34 DRAALIQEKESLEQQNEELRS 54 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 689999999999999999975
No 3
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=91.36 E-value=0.66 Score=32.28 Aligned_cols=33 Identities=33% Similarity=0.598 Sum_probs=29.9
Q ss_pred hhHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhh
Q psy9706 5 HTLEEELKDLREENKKLKEESQNALQQLRRFTE 37 (39)
Q Consensus 5 ~~Lq~Ev~~LRe~N~RLqeESqsA~~qLrkfte 37 (39)
..|++++.+|-..|.||+.+.....+||.+|..
T Consensus 140 ~~l~~~~~~L~~enerL~~e~~~~~~qlE~~v~ 172 (342)
T PF06632_consen 140 SRLQAENEHLQKENERLESEANKLLKQLEKFVN 172 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468899999999999999999999999999974
No 4
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=91.35 E-value=0.15 Score=32.66 Aligned_cols=22 Identities=55% Similarity=0.794 Sum_probs=7.7
Q ss_pred hHhhHHHHHH---HHHHHhHHHHHH
Q psy9706 3 RRHTLEEELK---DLREENKKLKEE 24 (39)
Q Consensus 3 ~r~~Lq~Ev~---~LRe~N~RLqeE 24 (39)
+.+.||.||. +||+.+|||++|
T Consensus 15 RnalLE~ELdEKE~L~~~~QRLkDE 39 (166)
T PF04880_consen 15 RNALLESELDEKENLREEVQRLKDE 39 (166)
T ss_dssp HHHHHHHHHHHHHHHHHCH------
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344554442 355555555555
No 5
>PRK10265 chaperone-modulator protein CbpM; Provisional
Probab=91.20 E-value=0.45 Score=27.34 Aligned_cols=26 Identities=38% Similarity=0.676 Sum_probs=22.0
Q ss_pred hhHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhh
Q psy9706 5 HTLEEELKDLREENKKLKEESQNALQQLRRFTE 37 (39)
Q Consensus 5 ~~Lq~Ev~~LRe~N~RLqeESqsA~~qLrkfte 37 (39)
..|.++|..||++++.|+. +|++|.+
T Consensus 74 l~LLd~i~~Lr~el~~L~~-------~l~~~~~ 99 (101)
T PRK10265 74 LTLLDEIAHLKQENRLLRQ-------RLSRFVA 99 (101)
T ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHhc
Confidence 3588999999999999976 8888875
No 6
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=88.18 E-value=1.7 Score=22.54 Aligned_cols=26 Identities=35% Similarity=0.562 Sum_probs=14.6
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy9706 6 TLEEELKDLREENKKLKEESQNALQQ 31 (39)
Q Consensus 6 ~Lq~Ev~~LRe~N~RLqeESqsA~~q 31 (39)
.|-++-.+|..+|+.|+.|.++-...
T Consensus 16 ~Lk~~~~~L~~E~~~L~aev~~L~~k 41 (45)
T PF02183_consen 16 SLKAEYDSLKKENEKLRAEVQELKEK 41 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45555566666666666665554443
No 7
>smart00338 BRLZ basic region leucin zipper.
Probab=87.67 E-value=2.7 Score=21.92 Aligned_cols=31 Identities=29% Similarity=0.541 Sum_probs=23.3
Q ss_pred hhHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q psy9706 5 HTLEEELKDLREENKKLKEESQNALQQLRRF 35 (39)
Q Consensus 5 ~~Lq~Ev~~LRe~N~RLqeESqsA~~qLrkf 35 (39)
..|+.+|..|...|..|+.+...-..++..+
T Consensus 29 ~~Le~~~~~L~~en~~L~~~~~~l~~e~~~l 59 (65)
T smart00338 29 EELERKVEQLEAENERLKKEIERLRRELEKL 59 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4688899999999999888777665555443
No 8
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=87.07 E-value=2.6 Score=23.63 Aligned_cols=28 Identities=43% Similarity=0.630 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy9706 7 LEEELKDLREENKKLKEESQNALQQLRR 34 (39)
Q Consensus 7 Lq~Ev~~LRe~N~RLqeESqsA~~qLrk 34 (39)
|..+...|+++|.+|++|-......|+.
T Consensus 37 L~~e~~~L~~en~~L~~e~~~~~~rl~~ 64 (72)
T PF06005_consen 37 LKEENEELKEENEQLKQERNAWQERLRS 64 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444666666666555555543
No 9
>PF11382 DUF3186: Protein of unknown function (DUF3186); InterPro: IPR021522 This bacterial family of proteins has no known function.
Probab=87.07 E-value=1.7 Score=29.10 Aligned_cols=28 Identities=39% Similarity=0.604 Sum_probs=24.1
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy9706 6 TLEEELKDLREENKKLKEESQNALQQLR 33 (39)
Q Consensus 6 ~Lq~Ev~~LRe~N~RLqeESqsA~~qLr 33 (39)
.|+.++..||++|.+|++|.+.+.+++.
T Consensus 36 ~l~~~~~~lr~e~~~l~~~~~~~~~~~~ 63 (308)
T PF11382_consen 36 SLEDQFDSLREENDELRAELDALQAQLN 63 (308)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4778999999999999999888887773
No 10
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=86.40 E-value=2.9 Score=24.58 Aligned_cols=30 Identities=27% Similarity=0.336 Sum_probs=25.6
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q psy9706 6 TLEEELKDLREENKKLKEESQNALQQLRRF 35 (39)
Q Consensus 6 ~Lq~Ev~~LRe~N~RLqeESqsA~~qLrkf 35 (39)
.++.|++.|-++|+.|+-|-+.|.+|.+.|
T Consensus 27 ka~~~~~kL~~en~qlk~Ek~~~~~qvkn~ 56 (87)
T PF10883_consen 27 KAKKQNAKLQKENEQLKTEKAVAETQVKNA 56 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778899999999999999999998876
No 11
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=86.00 E-value=2.7 Score=24.25 Aligned_cols=31 Identities=19% Similarity=0.243 Sum_probs=23.6
Q ss_pred hhHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhcC
Q psy9706 5 HTLEEELKDLREENKKLKEESQNALQQLRRFTEWT 39 (39)
Q Consensus 5 ~~Lq~Ev~~LRe~N~RLqeESqsA~~qLrkftew~ 39 (39)
..+++|++.|+..+.+|+.|-. =|+|.+.+|
T Consensus 74 ~~~~~ei~~L~~el~~L~~E~d----iLKKa~~~~ 104 (121)
T PRK09413 74 AAAMKQIKELQRLLGKKTMENE----LLKEAVEYG 104 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHh
Confidence 3478899999999999998863 566666554
No 12
>smart00340 HALZ homeobox associated leucin zipper.
Probab=85.58 E-value=0.94 Score=24.46 Aligned_cols=16 Identities=44% Similarity=0.675 Sum_probs=13.3
Q ss_pred HHHHHHHhHHHHHHHH
Q psy9706 11 LKDLREENKKLKEESQ 26 (39)
Q Consensus 11 v~~LRe~N~RLqeESq 26 (39)
..+|-++|+|||-|.+
T Consensus 14 ce~LteeNrRL~ke~~ 29 (44)
T smart00340 14 CESLTEENRRLQKEVQ 29 (44)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4679999999998865
No 13
>KOG4196|consensus
Probab=85.32 E-value=1.4 Score=28.25 Aligned_cols=25 Identities=28% Similarity=0.594 Sum_probs=19.8
Q ss_pred hHhhHHHHHHHHHHHhHHHHHHHHH
Q psy9706 3 RRHTLEEELKDLREENKKLKEESQN 27 (39)
Q Consensus 3 ~r~~Lq~Ev~~LRe~N~RLqeESqs 27 (39)
.|..|+.||..|+++|.+++-|-..
T Consensus 82 ~k~~L~qqv~~L~~e~s~~~~E~da 106 (135)
T KOG4196|consen 82 EKAELQQQVEKLKEENSRLRRELDA 106 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888899999999988876543
No 14
>PF09311 Rab5-bind: Rabaptin-like protein; InterPro: IPR015390 This domain is predominantly found in Rabaptin and allows for binding to the GTPase Rab5. This interaction is necessary and sufficient for Rab5-dependent recruitment of Rabaptin5 to early endosomal membranes []. ; PDB: 3NF1_A 3CEQ_B 3EDT_H 1X79_C 1TU3_F.
Probab=85.18 E-value=0.26 Score=30.65 Aligned_cols=30 Identities=33% Similarity=0.477 Sum_probs=5.4
Q ss_pred hHhhHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy9706 3 RRHTLEEELKDLREENKKLKEESQNALQQL 32 (39)
Q Consensus 3 ~r~~Lq~Ev~~LRe~N~RLqeESqsA~~qL 32 (39)
.|..|.++|++|.++|.-|.+|-..+++.|
T Consensus 23 erqkl~~qv~rL~qEN~~Lr~el~~tq~~l 52 (181)
T PF09311_consen 23 ERQKLRAQVRRLCQENDWLRGELANTQQKL 52 (181)
T ss_dssp CCHHHHT-----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467789999999999999999877776665
No 15
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=84.91 E-value=2.3 Score=21.95 Aligned_cols=22 Identities=41% Similarity=0.732 Sum_probs=12.8
Q ss_pred hhHHHHHHHHHHHhHHHHHHHH
Q psy9706 5 HTLEEELKDLREENKKLKEESQ 26 (39)
Q Consensus 5 ~~Lq~Ev~~LRe~N~RLqeESq 26 (39)
..|+.+++.|+++|..|+++-.
T Consensus 27 ~~l~~~i~~l~~e~~~L~~ei~ 48 (80)
T PF04977_consen 27 AELQKEIEELKKENEELKEEIE 48 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666665543
No 16
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=84.51 E-value=2.1 Score=25.45 Aligned_cols=24 Identities=42% Similarity=0.620 Sum_probs=18.6
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHH
Q psy9706 6 TLEEELKDLREENKKLKEESQNAL 29 (39)
Q Consensus 6 ~Lq~Ev~~LRe~N~RLqeESqsA~ 29 (39)
-||-||..|.+.|.-|+.|.++|.
T Consensus 22 LLQmEieELKEknn~l~~e~q~~q 45 (79)
T COG3074 22 LLQMEIEELKEKNNSLSQEVQNAQ 45 (79)
T ss_pred HHHHHHHHHHHHhhHhHHHHHHHH
Confidence 478888888888888887776554
No 17
>PF14645 Chibby: Chibby family
Probab=83.89 E-value=1.3 Score=26.58 Aligned_cols=21 Identities=43% Similarity=0.564 Sum_probs=16.3
Q ss_pred hHHHHHHHHHHHhHHHHHHHH
Q psy9706 6 TLEEELKDLREENKKLKEESQ 26 (39)
Q Consensus 6 ~Lq~Ev~~LRe~N~RLqeESq 26 (39)
....++.+|++.|+.|+||..
T Consensus 68 ~~~~~~~~l~~~n~~L~EENN 88 (116)
T PF14645_consen 68 ADGEENQRLRKENQQLEEENN 88 (116)
T ss_pred cchhHHHHHHHHHHHHHHHHH
Confidence 456778888888888888864
No 18
>PF14077 WD40_alt: Alternative WD40 repeat motif
Probab=83.80 E-value=1.8 Score=23.74 Aligned_cols=22 Identities=41% Similarity=0.530 Sum_probs=18.9
Q ss_pred hhHHHHHHHHHHHhHHHHHHHH
Q psy9706 5 HTLEEELKDLREENKKLKEESQ 26 (39)
Q Consensus 5 ~~Lq~Ev~~LRe~N~RLqeESq 26 (39)
..|++||+.||.=|+-|=+=|.
T Consensus 21 ~eLEeEV~~LrKINrdLfdFSt 42 (48)
T PF14077_consen 21 SELEEEVRTLRKINRDLFDFST 42 (48)
T ss_pred HHHHHHHHHHHHHhHHHHhhhh
Confidence 4699999999999999877654
No 19
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=83.20 E-value=0.5 Score=30.34 Aligned_cols=24 Identities=33% Similarity=0.583 Sum_probs=8.6
Q ss_pred hhHhhHHHHHHHHHHHhHHHHHHH
Q psy9706 2 RRRHTLEEELKDLREENKKLKEES 25 (39)
Q Consensus 2 r~r~~Lq~Ev~~LRe~N~RLqeES 25 (39)
+.|..|..||++||++-+-|+.|.
T Consensus 24 dEKE~L~~~~QRLkDE~RDLKqEl 47 (166)
T PF04880_consen 24 DEKENLREEVQRLKDELRDLKQEL 47 (166)
T ss_dssp HHHHHHHHCH--------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468899999999999999999998
No 20
>PRK14127 cell division protein GpsB; Provisional
Probab=82.41 E-value=3.5 Score=24.90 Aligned_cols=28 Identities=25% Similarity=0.545 Sum_probs=20.4
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy9706 6 TLEEELKDLREENKKLKEESQNALQQLR 33 (39)
Q Consensus 6 ~Lq~Ev~~LRe~N~RLqeESqsA~~qLr 33 (39)
.|..|+..|+++|.+|+++......++.
T Consensus 41 ~l~~e~~~Lk~e~~~l~~~l~e~~~~~~ 68 (109)
T PRK14127 41 AFQKEIEELQQENARLKAQVDELTKQVS 68 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 5677888888888888877665555543
No 21
>PF13942 Lipoprotein_20: YfhG lipoprotein
Probab=82.28 E-value=3.5 Score=27.37 Aligned_cols=32 Identities=22% Similarity=0.437 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhc
Q psy9706 7 LEEELKDLREENKKLKEESQNALQQLRRFTEW 38 (39)
Q Consensus 7 Lq~Ev~~LRe~N~RLqeESqsA~~qLrkftew 38 (39)
-.+|+..||+.+.+|+-+-.+..-+|-..|++
T Consensus 128 sD~~lD~Lr~qq~~Lq~qL~~T~RKLEnLTDI 159 (179)
T PF13942_consen 128 SDSELDALRQQQQRLQYQLDTTTRKLENLTDI 159 (179)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 35788999999999999999999999888764
No 22
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=82.17 E-value=3.3 Score=24.16 Aligned_cols=27 Identities=15% Similarity=0.388 Sum_probs=12.7
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy9706 6 TLEEELKDLREENKKLKEESQNALQQL 32 (39)
Q Consensus 6 ~Lq~Ev~~LRe~N~RLqeESqsA~~qL 32 (39)
.++.+++.++++|..|+.+.+.-..++
T Consensus 31 ~l~~q~~~~~~e~~~l~~~n~~L~~eI 57 (105)
T PRK00888 31 RVNDQVAAQQQTNAKLKARNDQLFAEI 57 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555544444443333
No 23
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=82.09 E-value=5.7 Score=23.19 Aligned_cols=24 Identities=17% Similarity=0.202 Sum_probs=18.1
Q ss_pred hHhhHHHHHHHHHHHhHHHHHHHH
Q psy9706 3 RRHTLEEELKDLREENKKLKEESQ 26 (39)
Q Consensus 3 ~r~~Lq~Ev~~LRe~N~RLqeESq 26 (39)
....++.|++.|.+.|.+|++|..
T Consensus 35 q~~~~~~e~~~l~~~n~~L~~eI~ 58 (105)
T PRK00888 35 QVAAQQQTNAKLKARNDQLFAEID 58 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346678888888888888887754
No 24
>PRK10722 hypothetical protein; Provisional
Probab=81.62 E-value=5.3 Score=27.51 Aligned_cols=31 Identities=23% Similarity=0.444 Sum_probs=28.5
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhhhc
Q psy9706 8 EEELKDLREENKKLKEESQNALQQLRRFTEW 38 (39)
Q Consensus 8 q~Ev~~LRe~N~RLqeESqsA~~qLrkftew 38 (39)
.+++.+|||.+++||-+..+...+|-..|++
T Consensus 175 D~qlD~lrqq~~~Lq~~L~~t~rKLEnLTdI 205 (247)
T PRK10722 175 DSELDALRQQQQRLQYQLELTTRKLENLTDI 205 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999999999999888864
No 25
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=81.16 E-value=6.6 Score=25.05 Aligned_cols=23 Identities=30% Similarity=0.352 Sum_probs=16.4
Q ss_pred HhhHHHHHHHHHHHhHHHHHHHH
Q psy9706 4 RHTLEEELKDLREENKKLKEESQ 26 (39)
Q Consensus 4 r~~Lq~Ev~~LRe~N~RLqeESq 26 (39)
...|.+|.+.|+++|..|+.+.+
T Consensus 71 ~~~l~~en~~L~~e~~~l~~~~~ 93 (276)
T PRK13922 71 LFDLREENEELKKELLELESRLQ 93 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777777776665
No 26
>PRK10884 SH3 domain-containing protein; Provisional
Probab=80.15 E-value=5.2 Score=25.94 Aligned_cols=25 Identities=32% Similarity=0.445 Sum_probs=16.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHH
Q psy9706 9 EELKDLREENKKLKEESQNALQQLR 33 (39)
Q Consensus 9 ~Ev~~LRe~N~RLqeESqsA~~qLr 33 (39)
.++..|.++|++|++|.+.+-.++.
T Consensus 132 ~~~~~L~~~n~~L~~~l~~~~~~~~ 156 (206)
T PRK10884 132 SVINGLKEENQKLKNQLIVAQKKVD 156 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445577777777777776666554
No 27
>cd00068 GGL G protein gamma subunit-like motifs, the alpha-helical G-gamma chain dimerizes with the G-beta propeller subunit as part of the heterotrimeric G-protein complex; involved in signal transduction via G-protein-coupled receptors
Probab=79.85 E-value=4.4 Score=21.40 Aligned_cols=32 Identities=25% Similarity=0.427 Sum_probs=26.0
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhh
Q psy9706 6 TLEEELKDLREENKKLKEESQNALQQLRRFTE 37 (39)
Q Consensus 6 ~Lq~Ev~~LRe~N~RLqeESqsA~~qLrkfte 37 (39)
.+..+|..||.+-.+=.--+..|++.|.+|++
T Consensus 3 ~~~~~veqLr~el~~~RikvS~a~~~l~~y~e 34 (57)
T cd00068 3 QLKKEVEQLRKELSRERLKVSKAAAELLKYCE 34 (57)
T ss_pred HHHHHHHHHHHHHCCchhhHHHHHHHHHHHHH
Confidence 46778888888887777778888999999875
No 28
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=79.76 E-value=5.3 Score=21.20 Aligned_cols=24 Identities=25% Similarity=0.353 Sum_probs=19.0
Q ss_pred HhhHHHHHHHHHHHhHHHHHHHHH
Q psy9706 4 RHTLEEELKDLREENKKLKEESQN 27 (39)
Q Consensus 4 r~~Lq~Ev~~LRe~N~RLqeESqs 27 (39)
-..++.++..+..+|.+|+.|-.+
T Consensus 33 ~~~~~~~~~~l~~en~~L~~ei~~ 56 (85)
T TIGR02209 33 LQKLQLEIDKLQKEWRDLQLEVAE 56 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456888888899999999877654
No 29
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=79.42 E-value=7.4 Score=21.47 Aligned_cols=28 Identities=32% Similarity=0.446 Sum_probs=23.1
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy9706 6 TLEEELKDLREENKKLKEESQNALQQLR 33 (39)
Q Consensus 6 ~Lq~Ev~~LRe~N~RLqeESqsA~~qLr 33 (39)
.|..+|..||.+-+-.++|...|-+.|-
T Consensus 21 qLs~dv~~lr~~v~~ak~EAaRAN~RlD 48 (56)
T PF04728_consen 21 QLSSDVNALRADVQAAKEEAARANQRLD 48 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5778888888888888888888888774
No 30
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=78.94 E-value=9.2 Score=21.39 Aligned_cols=22 Identities=41% Similarity=0.613 Sum_probs=15.4
Q ss_pred hhHHHHHHHHHHHhHHHHHHHH
Q psy9706 5 HTLEEELKDLREENKKLKEESQ 26 (39)
Q Consensus 5 ~~Lq~Ev~~LRe~N~RLqeESq 26 (39)
..|+-||..|++.|..|.++-.
T Consensus 21 ~~Lq~e~eeLke~n~~L~~e~~ 42 (72)
T PF06005_consen 21 ALLQMENEELKEKNNELKEENE 42 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHH
Confidence 4577788888888777765443
No 31
>smart00224 GGL G protein gamma subunit-like motifs.
Probab=78.20 E-value=4.1 Score=21.89 Aligned_cols=32 Identities=25% Similarity=0.405 Sum_probs=25.0
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhh
Q psy9706 6 TLEEELKDLREENKKLKEESQNALQQLRRFTE 37 (39)
Q Consensus 6 ~Lq~Ev~~LRe~N~RLqeESqsA~~qLrkfte 37 (39)
.+..+|..||.+-.|=.--+..|++.|.+|++
T Consensus 3 ~~~~~ve~Lr~el~~~RikvS~a~~~li~y~e 34 (63)
T smart00224 3 QLRKEVEQLRKELSRERIKVSKAAEELLAYCE 34 (63)
T ss_pred HHHHHHHHHHHHHCCceehHHHHHHHHHHHHH
Confidence 46677888888777777777888999999875
No 32
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=77.95 E-value=6.9 Score=23.05 Aligned_cols=22 Identities=41% Similarity=0.664 Sum_probs=14.0
Q ss_pred hHHHHHHHHHHHhHHHHHHHHH
Q psy9706 6 TLEEELKDLREENKKLKEESQN 27 (39)
Q Consensus 6 ~Lq~Ev~~LRe~N~RLqeESqs 27 (39)
-||-||..|++.|..|.+|.+.
T Consensus 22 LLqmEieELKekn~~L~~e~~~ 43 (79)
T PRK15422 22 LLQMEIEELKEKNNSLSQEVQN 43 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666666666666666554
No 33
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=77.81 E-value=6.3 Score=20.09 Aligned_cols=22 Identities=41% Similarity=0.717 Sum_probs=17.1
Q ss_pred hhHHHHHHHHHHHhHHHHHHHH
Q psy9706 5 HTLEEELKDLREENKKLKEESQ 26 (39)
Q Consensus 5 ~~Lq~Ev~~LRe~N~RLqeESq 26 (39)
..|+.+|..|...|..|+.+..
T Consensus 28 ~~le~~~~~L~~en~~L~~~i~ 49 (54)
T PF07716_consen 28 EELEQEVQELEEENEQLRQEIA 49 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888888888888876644
No 34
>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function.; PDB: 3E98_B.
Probab=77.62 E-value=7.7 Score=24.24 Aligned_cols=20 Identities=40% Similarity=0.705 Sum_probs=15.9
Q ss_pred HHHHHHHHHHhHHHHHHHHH
Q psy9706 8 EEELKDLREENKKLKEESQN 27 (39)
Q Consensus 8 q~Ev~~LRe~N~RLqeESqs 27 (39)
+.+|..||+.|++|+++-+.
T Consensus 46 erQ~~~LR~~~~~L~~~l~~ 65 (225)
T PF04340_consen 46 ERQLERLRERNRQLEEQLEE 65 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 56788999999999876554
No 35
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=77.22 E-value=10 Score=22.93 Aligned_cols=31 Identities=29% Similarity=0.448 Sum_probs=23.2
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHHHhh
Q psy9706 6 TLEEELKDLREENKKLKEESQNALQQLRRFT 36 (39)
Q Consensus 6 ~Lq~Ev~~LRe~N~RLqeESqsA~~qLrkft 36 (39)
.++.|+..|++.+.+|..+-..+.+.|-+.+
T Consensus 27 ~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~ 57 (120)
T PF12325_consen 27 RLEGELASLQEELARLEAERDELREEIVKLM 57 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888888888888877777777666554
No 36
>PF10482 CtIP_N: Tumour-suppressor protein CtIP N-terminal domain; InterPro: IPR019518 CtIP is predominantly a nuclear protein that complexes with both BRCA1 and the BRCA1-associated RING domain protein (BARD1). At the protein level, CtIP expression varies with cell cycle progression in a pattern identical to that of BRCA1. Thus, the steady-state levels of CtIP polypeptides, which remain low in resting cells and G1 cycling cells, increase dramatically as Dividing cells traverse the G1/S boundary. CtIP can potentially modulate the functions ascribed to BRCA1 in transcriptional regulation, DNA repair, and/or cell cycle checkpoint control []. This N-terminal domain carries a coiled-coil region and is essential for homodimerisation of the protein []. The C-terminal domain is family CtIP_C and carries functionally important CxxC and RHR motifs, absence of which lead cells to grow slowly and show hypersensitivity to genotoxins [].
Probab=76.01 E-value=2.6 Score=26.57 Aligned_cols=20 Identities=60% Similarity=0.805 Sum_probs=17.8
Q ss_pred hHHHHHHHHHHHhHHHHHHH
Q psy9706 6 TLEEELKDLREENKKLKEES 25 (39)
Q Consensus 6 ~Lq~Ev~~LRe~N~RLqeES 25 (39)
.|-.|+..|.++|.+|.||.
T Consensus 100 ~L~nE~n~L~eEN~~L~eEl 119 (120)
T PF10482_consen 100 ELTNEMNTLKEENKKLKEEL 119 (120)
T ss_pred HHHHHHHhHHHHHHHHHHHh
Confidence 46789999999999999985
No 37
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=75.94 E-value=7 Score=25.97 Aligned_cols=16 Identities=44% Similarity=0.302 Sum_probs=8.5
Q ss_pred hHHHHHHHHHHHhHHH
Q psy9706 6 TLEEELKDLREENKKL 21 (39)
Q Consensus 6 ~Lq~Ev~~LRe~N~RL 21 (39)
.|.+|-+.||+++..|
T Consensus 70 ~l~~EN~~Lr~e~~~l 85 (283)
T TIGR00219 70 NLEYENYKLRQELLKK 85 (283)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4555555555554444
No 38
>KOG0977|consensus
Probab=75.16 E-value=6.7 Score=29.42 Aligned_cols=32 Identities=50% Similarity=0.687 Sum_probs=27.7
Q ss_pred hhHhhHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy9706 2 RRRHTLEEELKDLREENKKLKEESQNALQQLR 33 (39)
Q Consensus 2 r~r~~Lq~Ev~~LRe~N~RLqeESqsA~~qLr 33 (39)
++...|+.|+.+|+.+|-||.++.+.+=.+|-
T Consensus 162 rr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld 193 (546)
T KOG0977|consen 162 RRIKALEDELKRLKAENSRLREELARARKQLD 193 (546)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 56788999999999999999999888776654
No 39
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=74.56 E-value=7.1 Score=29.43 Aligned_cols=31 Identities=35% Similarity=0.577 Sum_probs=25.2
Q ss_pred hhHhhHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy9706 2 RRRHTLEEELKDLREENKKLKEESQNALQQL 32 (39)
Q Consensus 2 r~r~~Lq~Ev~~LRe~N~RLqeESqsA~~qL 32 (39)
++|..|+.||.+||.++++|..+..+.-.++
T Consensus 79 ~~r~~L~~everLraei~~l~~~I~~~e~e~ 109 (632)
T PF14817_consen 79 RRRRELEKEVERLRAEIQELDKEIESREREV 109 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788999999999999999997766554443
No 40
>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins. Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.
Probab=74.26 E-value=3.6 Score=25.04 Aligned_cols=19 Identities=32% Similarity=0.571 Sum_probs=15.5
Q ss_pred HHHHHHHHHHhHHHHHHHH
Q psy9706 8 EEELKDLREENKKLKEESQ 26 (39)
Q Consensus 8 q~Ev~~LRe~N~RLqeESq 26 (39)
..|+.+|+..|+.|+||-.
T Consensus 71 ~~e~~rlkkk~~~LeEENN 89 (108)
T cd07429 71 GREVLRLKKKNQQLEEENN 89 (108)
T ss_pred hhHHHHHHHHHHHHHHHHH
Confidence 4678888889999998864
No 41
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=73.79 E-value=6.2 Score=24.86 Aligned_cols=34 Identities=29% Similarity=0.474 Sum_probs=26.1
Q ss_pred hHhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHhh
Q psy9706 3 RRHTLEEELKDLREENKKLKEESQNALQQLRRFT 36 (39)
Q Consensus 3 ~r~~Lq~Ev~~LRe~N~RLqeESqsA~~qLrkft 36 (39)
.+..|+..|..|..+|+.|+....+.+.|..++.
T Consensus 90 e~k~L~~~v~~Le~e~r~L~~~~~~~~~q~~rle 123 (158)
T PF09744_consen 90 ERKDLQSQVEQLEEENRQLELKLKNLSDQSSRLE 123 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccc
Confidence 3456888899999999999987777777765543
No 42
>PRK10884 SH3 domain-containing protein; Provisional
Probab=73.48 E-value=9.3 Score=24.77 Aligned_cols=27 Identities=26% Similarity=0.254 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy9706 7 LEEELKDLREENKKLKEESQNALQQLR 33 (39)
Q Consensus 7 Lq~Ev~~LRe~N~RLqeESqsA~~qLr 33 (39)
|++|-+.|++++..++.|...+-+++.
T Consensus 137 L~~~n~~L~~~l~~~~~~~~~l~~~~~ 163 (206)
T PRK10884 137 LKEENQKLKNQLIVAQKKVDAANLQLD 163 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666777777777777766666555544
No 43
>PF00631 G-gamma: GGL domain; InterPro: IPR015898 This entry represents the G protein gamma subunit and the GGL (G protein gamma-like) domain, which are related in sequence and are comprised of an extended alpha-helical polypeptide. The G protein gamma subunit forms a stable dimer with the beta subunit, but it does not make any contact with the alpha subunit, which contacts the opposite face of the beta subunit. The GGL domain is found in several RGS (regulators of G protein signaling) proteins. GGL domains can interact with beta subunits to form novel dimers that prevent gamma subunit binding, and may prevent heterotrimer formation by inhibiting alpha subunit binding. The interaction between G protein beta-5 neuro-specific isoforms and RGS GGL domains may represent a general mode of binding between beta-propeller proteins and their partners [].; GO: 0004871 signal transducer activity, 0007186 G-protein coupled receptor protein signaling pathway, 0005834 heterotrimeric G-protein complex; PDB: 3PSC_G 3SN6_G 1OMW_G 2BCJ_G 1GG2_G 3PVW_G 3PVU_G 3AH8_G 3CIK_G 1GP2_G ....
Probab=72.83 E-value=11 Score=20.04 Aligned_cols=34 Identities=24% Similarity=0.440 Sum_probs=19.8
Q ss_pred HhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhh
Q psy9706 4 RHTLEEELKDLREENKKLKEESQNALQQLRRFTE 37 (39)
Q Consensus 4 r~~Lq~Ev~~LRe~N~RLqeESqsA~~qLrkfte 37 (39)
+..|..||..||++-.+=.--+..|+.-|..|.+
T Consensus 4 ~~~l~~ei~~L~~el~~~r~~vS~a~~~li~y~~ 37 (68)
T PF00631_consen 4 KDQLKREIEQLRQELERERIKVSKACKELIEYCE 37 (68)
T ss_dssp HHHHHHHHHHHHHHHTS----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcccceeHHHHHHHHHHHhc
Confidence 4566777777777654433345557777777754
No 44
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=71.97 E-value=16 Score=21.66 Aligned_cols=30 Identities=30% Similarity=0.548 Sum_probs=20.1
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q psy9706 6 TLEEELKDLREENKKLKEESQNALQQLRRF 35 (39)
Q Consensus 6 ~Lq~Ev~~LRe~N~RLqeESqsA~~qLrkf 35 (39)
.|..+|..|=++|.+|+-|-+..-..|.+.
T Consensus 26 ~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~ 55 (107)
T PF06156_consen 26 ELKKQLQELLEENARLRIENEHLRERLEEL 55 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466677777777888777776655555443
No 45
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=71.69 E-value=11 Score=27.72 Aligned_cols=27 Identities=30% Similarity=0.330 Sum_probs=20.6
Q ss_pred hHhhHHHHHHHHHHHhHHHHHHHHHHH
Q psy9706 3 RRHTLEEELKDLREENKKLKEESQNAL 29 (39)
Q Consensus 3 ~r~~Lq~Ev~~LRe~N~RLqeESqsA~ 29 (39)
+...|+.=|++++|+|++||-.-++..
T Consensus 128 ~~q~LE~li~~~~EEn~~lqlqL~~l~ 154 (401)
T PF06785_consen 128 DIQHLEGLIRHLREENQCLQLQLDALQ 154 (401)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 356789999999999999984444433
No 46
>PF14916 CCDC92: Coiled-coil domain of unknown function
Probab=71.55 E-value=3.4 Score=23.01 Aligned_cols=17 Identities=35% Similarity=0.575 Sum_probs=14.4
Q ss_pred hHHHHHHHHHHHhHHHH
Q psy9706 6 TLEEELKDLREENKKLK 22 (39)
Q Consensus 6 ~Lq~Ev~~LRe~N~RLq 22 (39)
.|-+||.+|+..|..|+
T Consensus 25 ~LH~EIe~Lq~~~~dL~ 41 (60)
T PF14916_consen 25 GLHAEIERLQKRNKDLT 41 (60)
T ss_pred HHHHHHHHHHHhccccc
Confidence 57789999999998876
No 47
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=71.14 E-value=16 Score=21.49 Aligned_cols=31 Identities=29% Similarity=0.538 Sum_probs=24.1
Q ss_pred hhHHHHHHH-------HHHHhHHHHHHHHHHHHHHHHh
Q psy9706 5 HTLEEELKD-------LREENKKLKEESQNALQQLRRF 35 (39)
Q Consensus 5 ~~Lq~Ev~~-------LRe~N~RLqeESqsA~~qLrkf 35 (39)
..|..|+.. |.++|+.|++|-++=-..||..
T Consensus 35 ~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~L 72 (79)
T PRK15422 35 NSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQAL 72 (79)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777776 8899999999988777777653
No 48
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=70.77 E-value=11 Score=20.72 Aligned_cols=24 Identities=38% Similarity=0.584 Sum_probs=17.4
Q ss_pred HhhHHHHHHHHHHHhHHHHHHHHH
Q psy9706 4 RHTLEEELKDLREENKKLKEESQN 27 (39)
Q Consensus 4 r~~Lq~Ev~~LRe~N~RLqeESqs 27 (39)
-..++.|...|.++|.+|+=|-.+
T Consensus 44 l~~l~~~~~~l~~e~~~L~lE~~~ 67 (97)
T PF04999_consen 44 LQQLEKEIDQLQEENERLRLEIAT 67 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346778888888888888765443
No 49
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=70.08 E-value=13 Score=19.03 Aligned_cols=32 Identities=25% Similarity=0.487 Sum_probs=26.7
Q ss_pred HhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q psy9706 4 RHTLEEELKDLREENKKLKEESQNALQQLRRF 35 (39)
Q Consensus 4 r~~Lq~Ev~~LRe~N~RLqeESqsA~~qLrkf 35 (39)
...+..|+..|...+..|+.+...-.+++.+.
T Consensus 19 ~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 19 YYQLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34678899999999999999998888877765
No 50
>PF13591 MerR_2: MerR HTH family regulatory protein
Probab=69.76 E-value=6.3 Score=21.75 Aligned_cols=18 Identities=28% Similarity=0.512 Sum_probs=14.6
Q ss_pred hhHHHHHHHHHHHhHHHH
Q psy9706 5 HTLEEELKDLREENKKLK 22 (39)
Q Consensus 5 ~~Lq~Ev~~LRe~N~RLq 22 (39)
..|.++|..||++++.|+
T Consensus 66 l~LLd~i~~L~~el~~L~ 83 (84)
T PF13591_consen 66 LDLLDRIEQLRRELRELR 83 (84)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 357888999999988875
No 51
>PRK14872 rod shape-determining protein MreC; Provisional
Probab=69.54 E-value=11 Score=26.47 Aligned_cols=22 Identities=32% Similarity=0.240 Sum_probs=13.5
Q ss_pred hHHHHHHHHHHHhHHHHHHHHH
Q psy9706 6 TLEEELKDLREENKKLKEESQN 27 (39)
Q Consensus 6 ~Lq~Ev~~LRe~N~RLqeESqs 27 (39)
.|.+|-+.||++|.+|+.+.+.
T Consensus 61 ~L~~EN~~Lk~Ena~L~~~l~~ 82 (337)
T PRK14872 61 VLETENFLLKERIALLEERLKS 82 (337)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4666666666666666555443
No 52
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=68.56 E-value=17 Score=24.19 Aligned_cols=30 Identities=23% Similarity=0.315 Sum_probs=20.3
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q psy9706 6 TLEEELKDLREENKKLKEESQNALQQLRRF 35 (39)
Q Consensus 6 ~Lq~Ev~~LRe~N~RLqeESqsA~~qLrkf 35 (39)
.|-+-|..|--+|+||++|+..--..+-.|
T Consensus 5 dL~~~v~dL~~~n~~L~~en~kL~~~ve~~ 34 (193)
T PF14662_consen 5 DLLSCVEDLQLNNQKLADENAKLQRSVETA 34 (193)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 466677888888888888876655444443
No 53
>KOG4378|consensus
Probab=68.41 E-value=4.7 Score=31.24 Aligned_cols=18 Identities=56% Similarity=0.728 Sum_probs=15.0
Q ss_pred hhHHHHHHHHHHHhHHHH
Q psy9706 5 HTLEEELKDLREENKKLK 22 (39)
Q Consensus 5 ~~Lq~Ev~~LRe~N~RLq 22 (39)
.+|-+|++.||++||+|.
T Consensus 653 e~l~aelk~lreenq~lr 670 (673)
T KOG4378|consen 653 EMLKAELKFLREENQTLR 670 (673)
T ss_pred HHHHHHHHHHHHhhhhhh
Confidence 357789999999999885
No 54
>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long). Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.
Probab=68.30 E-value=9.5 Score=25.40 Aligned_cols=19 Identities=47% Similarity=0.681 Sum_probs=14.8
Q ss_pred hHHHHHHHHHHHhHHHHHH
Q psy9706 6 TLEEELKDLREENKKLKEE 24 (39)
Q Consensus 6 ~Lq~Ev~~LRe~N~RLqeE 24 (39)
.+++||+.|+++|..|++-
T Consensus 136 ~~~eEi~~lk~en~~L~el 154 (200)
T PF07412_consen 136 QKDEEIAKLKEENEELKEL 154 (200)
T ss_dssp HHHHHHHHHHHHHHCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5677888888888888764
No 55
>PF11285 DUF3086: Protein of unknown function (DUF3086); InterPro: IPR021437 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=67.77 E-value=14 Score=26.09 Aligned_cols=37 Identities=19% Similarity=0.517 Sum_probs=28.3
Q ss_pred hhHhhHHHHHHHHHHHhHHHHHHH--------HHHHHHHHHhhhc
Q psy9706 2 RRRHTLEEELKDLREENKKLKEES--------QNALQQLRRFTEW 38 (39)
Q Consensus 2 r~r~~Lq~Ev~~LRe~N~RLqeES--------qsA~~qLrkftew 38 (39)
.+|.+|+.||..|-..-.|+++|. +.-+-+++-|-++
T Consensus 11 qrk~~Lq~eIe~LerR~~ri~~EmrtsFaG~Sq~lA~RVqGFkdY 55 (283)
T PF11285_consen 11 QRKQALQIEIEQLERRRERIEKEMRTSFAGQSQDLAIRVQGFKDY 55 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHhhhHHH
Confidence 478999999999999999999885 4445555555543
No 56
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=67.39 E-value=17 Score=23.26 Aligned_cols=30 Identities=27% Similarity=0.413 Sum_probs=24.8
Q ss_pred hhHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy9706 5 HTLEEELKDLREENKKLKEESQNALQQLRR 34 (39)
Q Consensus 5 ~~Lq~Ev~~LRe~N~RLqeESqsA~~qLrk 34 (39)
+.-.+||+.||+..++.++...++...|++
T Consensus 64 ~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~ 93 (194)
T PF15619_consen 64 QRHNEEVRVLRERLRKSQEQERELERKLKD 93 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345789999999999999988888877764
No 57
>PRK14872 rod shape-determining protein MreC; Provisional
Probab=67.33 E-value=14 Score=25.99 Aligned_cols=26 Identities=27% Similarity=0.226 Sum_probs=19.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHh
Q psy9706 10 ELKDLREENKKLKEESQNALQQLRRF 35 (39)
Q Consensus 10 Ev~~LRe~N~RLqeESqsA~~qLrkf 35 (39)
...+|+++|++|++|...-.+++.+.
T Consensus 58 ~y~~L~~EN~~Lk~Ena~L~~~l~~~ 83 (337)
T PRK14872 58 HALVLETENFLLKERIALLEERLKSY 83 (337)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678888888888887777776654
No 58
>PF15294 Leu_zip: Leucine zipper
Probab=66.70 E-value=12 Score=25.91 Aligned_cols=22 Identities=45% Similarity=0.664 Sum_probs=17.5
Q ss_pred hHHHHHHHHHHHhHHHHHHHHH
Q psy9706 6 TLEEELKDLREENKKLKEESQN 27 (39)
Q Consensus 6 ~Lq~Ev~~LRe~N~RLqeESqs 27 (39)
-|..|+.+|+++|..|++-..+
T Consensus 129 ll~kEi~rLq~EN~kLk~rl~~ 150 (278)
T PF15294_consen 129 LLNKEIDRLQEENEKLKERLKS 150 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3788999999999999875444
No 59
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=65.82 E-value=9 Score=25.59 Aligned_cols=20 Identities=55% Similarity=0.694 Sum_probs=13.9
Q ss_pred hhHHHHHHHHHHHhHHHHHH
Q psy9706 5 HTLEEELKDLREENKKLKEE 24 (39)
Q Consensus 5 ~~Lq~Ev~~LRe~N~RLqeE 24 (39)
..++.++..|+++|+||.+.
T Consensus 86 ~~~~~~~~~l~~EN~~Lr~l 105 (284)
T COG1792 86 EQLLEEVESLEEENKRLKEL 105 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45566777777777777764
No 60
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=65.05 E-value=21 Score=26.11 Aligned_cols=32 Identities=25% Similarity=0.274 Sum_probs=27.5
Q ss_pred HhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q psy9706 4 RHTLEEELKDLREENKKLKEESQNALQQLRRF 35 (39)
Q Consensus 4 r~~Lq~Ev~~LRe~N~RLqeESqsA~~qLrkf 35 (39)
...|+.++..|.+.|.||.+--..|-+||.+.
T Consensus 3 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 34 (512)
T TIGR03689 3 LRELQATNSSLGARNAKLAELLKAARDKLSKL 34 (512)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35689999999999999999988888887764
No 61
>PF07139 DUF1387: Protein of unknown function (DUF1387); InterPro: IPR009816 This family represents a conserved region approximately 300 residues long within a number of hypothetical proteins of unknown function that seem to be restricted to mammals.
Probab=64.61 E-value=22 Score=25.05 Aligned_cols=37 Identities=24% Similarity=0.460 Sum_probs=32.6
Q ss_pred ChhHhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhh
Q psy9706 1 MRRRHTLEEELKDLREENKKLKEESQNALQQLRRFTE 37 (39)
Q Consensus 1 ~r~r~~Lq~Ev~~LRe~N~RLqeESqsA~~qLrkfte 37 (39)
|++-++|-+||....++-..+-+..|--|+-||+.|+
T Consensus 199 ~dREvaLl~EmdkVK~EAmeiL~aRqkkAeeLkrltd 235 (302)
T PF07139_consen 199 MDREVALLAEMDKVKAEAMEILDARQKKAEELKRLTD 235 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567889999999999999999999999999999875
No 62
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=64.25 E-value=25 Score=23.35 Aligned_cols=19 Identities=32% Similarity=0.464 Sum_probs=13.1
Q ss_pred HHHHHHHHhHHHHHHHHHH
Q psy9706 10 ELKDLREENKKLKEESQNA 28 (39)
Q Consensus 10 Ev~~LRe~N~RLqeESqsA 28 (39)
.+.+|.++|++|++|-...
T Consensus 67 ~~~~l~~EN~~Lr~e~~~l 85 (283)
T TIGR00219 67 DVNNLEYENYKLRQELLKK 85 (283)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4566778888888775544
No 63
>PHA03386 P10 fibrous body protein; Provisional
Probab=63.58 E-value=19 Score=21.84 Aligned_cols=25 Identities=20% Similarity=0.352 Sum_probs=20.5
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHH
Q psy9706 6 TLEEELKDLREENKKLKEESQNALQ 30 (39)
Q Consensus 6 ~Lq~Ev~~LRe~N~RLqeESqsA~~ 30 (39)
+||..|..|+.||+.|...+..-..
T Consensus 23 aLQ~qV~dv~~n~~~LDa~~~qL~~ 47 (94)
T PHA03386 23 ALQTQLNGLEEDSQPLDGLPAQLTE 47 (94)
T ss_pred HHHHHHHHHHhcchhhhhHHHHHHH
Confidence 6999999999999998877665443
No 64
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=63.54 E-value=27 Score=20.25 Aligned_cols=29 Identities=31% Similarity=0.596 Sum_probs=15.9
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy9706 6 TLEEELKDLREENKKLKEESQNALQQLRR 34 (39)
Q Consensus 6 ~Lq~Ev~~LRe~N~RLqeESqsA~~qLrk 34 (39)
.|+++++.+.+++.+|+.......+++++
T Consensus 84 ~l~~~~~~~~~~~~~l~~~~~~~~~~~k~ 112 (118)
T PF13815_consen 84 QLEERLQELQQEIEKLKQKLKKQKEEIKK 112 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555666665555555555443
No 65
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=63.43 E-value=18 Score=20.93 Aligned_cols=22 Identities=41% Similarity=0.513 Sum_probs=11.5
Q ss_pred hHHHHHHHHHHHhHHHHHHHHH
Q psy9706 6 TLEEELKDLREENKKLKEESQN 27 (39)
Q Consensus 6 ~Lq~Ev~~LRe~N~RLqeESqs 27 (39)
.|+.|-.+|.++.++|..|-|.
T Consensus 4 ei~eEn~~Lk~eiqkle~ELq~ 25 (76)
T PF07334_consen 4 EIQEENARLKEEIQKLEAELQQ 25 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555544443
No 66
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=63.38 E-value=23 Score=19.47 Aligned_cols=29 Identities=38% Similarity=0.463 Sum_probs=22.6
Q ss_pred hhHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy9706 5 HTLEEELKDLREENKKLKEESQNALQQLR 33 (39)
Q Consensus 5 ~~Lq~Ev~~LRe~N~RLqeESqsA~~qLr 33 (39)
..|+++++.|.....+++.+-..+.+++.
T Consensus 73 ~~l~~~l~~l~~~~~~~~~~~~~~~~~~~ 101 (104)
T PF13600_consen 73 KELEEELEALEDELAALQDEIQALEAQIA 101 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788888888888888888777777664
No 67
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=62.02 E-value=24 Score=20.73 Aligned_cols=19 Identities=32% Similarity=0.663 Sum_probs=9.0
Q ss_pred HhhHHHHHHHHHHHhHHHH
Q psy9706 4 RHTLEEELKDLREENKKLK 22 (39)
Q Consensus 4 r~~Lq~Ev~~LRe~N~RLq 22 (39)
+..|...+++|+.++.+|+
T Consensus 54 ~e~l~~~~~~l~~d~~~l~ 72 (151)
T PF11559_consen 54 REDLSDKLRRLRSDIERLQ 72 (151)
T ss_pred HHHHHHHHHHHHhHHHHHH
Confidence 3444444555544444444
No 68
>KOG4005|consensus
Probab=62.01 E-value=19 Score=25.57 Aligned_cols=24 Identities=42% Similarity=0.607 Sum_probs=18.7
Q ss_pred hhHHHHHHHHHHHhHHHHHHHHHH
Q psy9706 5 HTLEEELKDLREENKKLKEESQNA 28 (39)
Q Consensus 5 ~~Lq~Ev~~LRe~N~RLqeESqsA 28 (39)
..++.||+.|-++|++|+-|-++-
T Consensus 93 ~eme~~i~dL~een~~L~~en~~L 116 (292)
T KOG4005|consen 93 EEMEYEIKDLTEENEILQNENDSL 116 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357888888988888888776653
No 69
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=61.65 E-value=19 Score=26.44 Aligned_cols=32 Identities=31% Similarity=0.587 Sum_probs=27.8
Q ss_pred hhHhhHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy9706 2 RRRHTLEEELKDLREENKKLKEESQNALQQLR 33 (39)
Q Consensus 2 r~r~~Lq~Ev~~LRe~N~RLqeESqsA~~qLr 33 (39)
+.+..|..||++|.+-|.++..|..+-+.-||
T Consensus 165 ~~~~~L~~qi~~L~~~n~~i~~ea~nLt~ALk 196 (475)
T PRK10361 165 QERHTLAHEIRNLQQLNAQMAQEAINLTRALK 196 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 45789999999999999999999888777664
No 70
>PF12123 Amidase02_C: N-acetylmuramoyl-l-alanine amidase; InterPro: IPR021976 This domain is found in bacteria and viruses. This domain is about 50 amino acids in length. This domain is classified with the enzyme classification code 3.5.1.28 from EC. This domain is the C-terminal of the enzyme which hydrolyses the link between N-acetylmuramoyl residues and L-amino acid residues in certain cell-wall glycopeptides. ; PDB: 2L48_B.
Probab=61.03 E-value=3.8 Score=21.61 Aligned_cols=11 Identities=36% Similarity=0.797 Sum_probs=9.5
Q ss_pred HHHHHHhhhcC
Q psy9706 29 LQQLRRFTEWT 39 (39)
Q Consensus 29 ~~qLrkftew~ 39 (39)
-+||.+|++||
T Consensus 26 ~~~L~k~~~wl 36 (45)
T PF12123_consen 26 DAELDKFTAWL 36 (45)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 47999999995
No 71
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=58.70 E-value=23 Score=25.04 Aligned_cols=24 Identities=33% Similarity=0.570 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHH
Q psy9706 7 LEEELKDLREENKKLKEESQNALQ 30 (39)
Q Consensus 7 Lq~Ev~~LRe~N~RLqeESqsA~~ 30 (39)
...+.+.+|++|.|||.--+.-++
T Consensus 259 ~~~eek~ireEN~rLqr~L~~E~e 282 (310)
T PF09755_consen 259 YLQEEKEIREENRRLQRKLQREVE 282 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345668899999998865554433
No 72
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=58.00 E-value=39 Score=20.26 Aligned_cols=30 Identities=37% Similarity=0.542 Sum_probs=16.7
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q psy9706 6 TLEEELKDLREENKKLKEESQNALQQLRRF 35 (39)
Q Consensus 6 ~Lq~Ev~~LRe~N~RLqeESqsA~~qLrkf 35 (39)
.+..++..|+++...|+.+-....+.|...
T Consensus 76 ~ld~ei~~L~~el~~l~~~~k~l~~eL~~L 105 (169)
T PF07106_consen 76 ELDAEIKELREELAELKKEVKSLEAELASL 105 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666665555555555443
No 73
>KOG0483|consensus
Probab=57.92 E-value=21 Score=23.38 Aligned_cols=29 Identities=34% Similarity=0.601 Sum_probs=23.8
Q ss_pred hhHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy9706 5 HTLEEELKDLREENKKLKEESQNALQQLR 33 (39)
Q Consensus 5 ~~Lq~Ev~~LRe~N~RLqeESqsA~~qLr 33 (39)
..|..+...|+.+|.+||.|.+.-.+++.
T Consensus 115 ~~Lk~~~~~l~~~~~~Lq~e~~eL~~~~~ 143 (198)
T KOG0483|consen 115 ESLKRQLESLRSENDRLQSEVQELVAELS 143 (198)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHh
Confidence 35778888999999999999888777665
No 74
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=57.31 E-value=14 Score=24.62 Aligned_cols=20 Identities=35% Similarity=0.509 Sum_probs=9.8
Q ss_pred hHHHHHHHHHHHhHHHHHHH
Q psy9706 6 TLEEELKDLREENKKLKEES 25 (39)
Q Consensus 6 ~Lq~Ev~~LRe~N~RLqeES 25 (39)
.||+|++.+.+.+..|+.|.
T Consensus 97 ELE~elr~~~~~~~~L~~Ev 116 (248)
T PF08172_consen 97 ELEEELRKQQQTISSLRREV 116 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 35555555555554444443
No 75
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=56.95 E-value=29 Score=19.47 Aligned_cols=25 Identities=44% Similarity=0.638 Sum_probs=18.9
Q ss_pred hHhhHHHHHHHHHHHhHHHHHHHHH
Q psy9706 3 RRHTLEEELKDLREENKKLKEESQN 27 (39)
Q Consensus 3 ~r~~Lq~Ev~~LRe~N~RLqeESqs 27 (39)
.+..|.+.++.+..+|..|.++.+.
T Consensus 81 ~~~~L~~~l~~l~~eN~~L~~~i~~ 105 (109)
T PF03980_consen 81 EREQLNARLQELEEENEALAEEIQE 105 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567888888888888888877653
No 76
>PRK02195 V-type ATP synthase subunit D; Provisional
Probab=56.50 E-value=42 Score=21.41 Aligned_cols=30 Identities=23% Similarity=0.420 Sum_probs=23.7
Q ss_pred hHhhHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy9706 3 RRHTLEEELKDLREENKKLKEESQNALQQL 32 (39)
Q Consensus 3 ~r~~Lq~Ev~~LRe~N~RLqeESqsA~~qL 32 (39)
-|..|..|+..+..++..++++........
T Consensus 32 KR~~Li~e~~~~~~~~~~lr~~~~~~~~~a 61 (201)
T PRK02195 32 KKAQLQAEVRRAKAEAAELEQEYQKLRQAI 61 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477899999999999999998876654443
No 77
>PRK10963 hypothetical protein; Provisional
Probab=56.35 E-value=35 Score=21.67 Aligned_cols=20 Identities=25% Similarity=0.195 Sum_probs=15.7
Q ss_pred HHHHHHHHHHhHHHHHHHHH
Q psy9706 8 EEELKDLREENKKLKEESQN 27 (39)
Q Consensus 8 q~Ev~~LRe~N~RLqeESqs 27 (39)
+-+|..||+.|+.|+.+-.+
T Consensus 43 ErQ~~~LR~r~~~Le~~l~~ 62 (223)
T PRK10963 43 EWQMARQRNHIHVLEEEMTL 62 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 56788999999999876544
No 78
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=56.17 E-value=34 Score=22.39 Aligned_cols=22 Identities=23% Similarity=0.398 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHhHHHHHHHHHH
Q psy9706 7 LEEELKDLREENKKLKEESQNA 28 (39)
Q Consensus 7 Lq~Ev~~LRe~N~RLqeESqsA 28 (39)
|+.++..|+++..+|+...+..
T Consensus 59 l~~ql~~lq~ev~~LrG~~E~~ 80 (263)
T PRK10803 59 LQQQLSDNQSDIDSLRGQIQEN 80 (263)
T ss_pred HHHHHHHHHHHHHHHhhHHHHH
Confidence 4445555555555554433333
No 79
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=55.85 E-value=34 Score=18.90 Aligned_cols=20 Identities=30% Similarity=0.466 Sum_probs=13.5
Q ss_pred hHHHHHHHHHHHhHHHHHHH
Q psy9706 6 TLEEELKDLREENKKLKEES 25 (39)
Q Consensus 6 ~Lq~Ev~~LRe~N~RLqeES 25 (39)
.|+++|..||..|-++....
T Consensus 2 ~Lea~~~~Lr~rLd~~~rk~ 21 (69)
T PF14197_consen 2 KLEAEIATLRNRLDSLTRKN 21 (69)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 47778888887776665443
No 80
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=55.72 E-value=28 Score=17.97 Aligned_cols=27 Identities=33% Similarity=0.586 Sum_probs=17.0
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy9706 6 TLEEELKDLREENKKLKEESQNALQQL 32 (39)
Q Consensus 6 ~Lq~Ev~~LRe~N~RLqeESqsA~~qL 32 (39)
.|+.+|..|-..|..|..+.......+
T Consensus 30 ~Le~~~~~L~~en~~L~~~~~~L~~~~ 56 (64)
T PF00170_consen 30 ELEEKVEELESENEELKKELEQLKKEI 56 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777777777777776655544443
No 81
>PHA00327 minor capsid protein
Probab=54.94 E-value=15 Score=24.70 Aligned_cols=22 Identities=36% Similarity=0.638 Sum_probs=17.2
Q ss_pred HhhHHHHHHHHHHHhHHHHHHH
Q psy9706 4 RHTLEEELKDLREENKKLKEES 25 (39)
Q Consensus 4 r~~Lq~Ev~~LRe~N~RLqeES 25 (39)
+..+++|.++|++.|++++=-|
T Consensus 117 ~~r~~aelQnL~~q~r~in~~s 138 (187)
T PHA00327 117 RKRMQAELQNLREQNRLINFNS 138 (187)
T ss_pred HHHHHHHHHHHHHHHHHhhhhH
Confidence 4456999999999999887443
No 82
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=54.28 E-value=25 Score=18.98 Aligned_cols=23 Identities=30% Similarity=0.465 Sum_probs=17.3
Q ss_pred HhhHHHHHHHHHHHhHHHHHHHH
Q psy9706 4 RHTLEEELKDLREENKKLKEESQ 26 (39)
Q Consensus 4 r~~Lq~Ev~~LRe~N~RLqeESq 26 (39)
+.....++..|+.+|..|+++..
T Consensus 24 ~~~a~~rl~~l~~EN~~Lr~eL~ 46 (52)
T PF12808_consen 24 RSAARKRLSKLEGENRLLRAELE 46 (52)
T ss_pred chhHHHHHHHHHHHHHHHHHHHH
Confidence 44556788888888888887754
No 83
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=53.03 E-value=26 Score=26.33 Aligned_cols=35 Identities=31% Similarity=0.524 Sum_probs=27.2
Q ss_pred hHhhHHHHHHHHHHHhHHHHHHHHHHH----HHHHHhhh
Q psy9706 3 RRHTLEEELKDLREENKKLKEESQNAL----QQLRRFTE 37 (39)
Q Consensus 3 ~r~~Lq~Ev~~LRe~N~RLqeESqsA~----~qLrkfte 37 (39)
.|..+.+|++.+.+++++||||-.+.- .||.-.||
T Consensus 456 ek~~l~eeL~~a~~~i~~LqDEL~TTr~NYE~QLs~MSE 494 (518)
T PF10212_consen 456 EKESLEEELKEANQNISRLQDELETTRRNYEEQLSMMSE 494 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 577899999999999999999987753 45544443
No 84
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=52.45 E-value=32 Score=25.60 Aligned_cols=18 Identities=33% Similarity=0.516 Sum_probs=12.0
Q ss_pred hHHHHHHHHHHHhHHHHH
Q psy9706 6 TLEEELKDLREENKKLKE 23 (39)
Q Consensus 6 ~Lq~Ev~~LRe~N~RLqe 23 (39)
.|..+-+.|+++|.||+.
T Consensus 77 ~l~~~N~~l~~eN~~L~~ 94 (472)
T TIGR03752 77 KLISENEALKAENERLQK 94 (472)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 456666667777777765
No 85
>KOG2070|consensus
Probab=52.37 E-value=34 Score=26.71 Aligned_cols=29 Identities=41% Similarity=0.729 Sum_probs=21.9
Q ss_pred hHHHHHHHHHHHhHHHH---HHHHHHHHHHHH
Q psy9706 6 TLEEELKDLREENKKLK---EESQNALQQLRR 34 (39)
Q Consensus 6 ~Lq~Ev~~LRe~N~RLq---eESqsA~~qLrk 34 (39)
+|-.||+.|+++|++++ ||-+.|-..|-+
T Consensus 620 alkd~v~~lqqd~~kmkk~leeEqkaRrdLe~ 651 (661)
T KOG2070|consen 620 ALKDEVSELQQDNKKMKKVLEEEQKARRDLEK 651 (661)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68899999999999987 555555555543
No 86
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=52.20 E-value=43 Score=19.08 Aligned_cols=32 Identities=31% Similarity=0.505 Sum_probs=25.4
Q ss_pred HhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q psy9706 4 RHTLEEELKDLREENKKLKEESQNALQQLRRF 35 (39)
Q Consensus 4 r~~Lq~Ev~~LRe~N~RLqeESqsA~~qLrkf 35 (39)
+..++++|+.|-.+-.||-++--.+-+.+.+.
T Consensus 34 ~~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~L 65 (89)
T PF13747_consen 34 RDELEEEIQRLDADRSRLAQELDQAEARANRL 65 (89)
T ss_pred hhhHHHHHHHHHhhHHHHHHHHHhHHHHHHHH
Confidence 45788999999999999998887777666543
No 87
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=51.53 E-value=52 Score=19.80 Aligned_cols=27 Identities=33% Similarity=0.512 Sum_probs=14.8
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy9706 6 TLEEELKDLREENKKLKEESQNALQQL 32 (39)
Q Consensus 6 ~Lq~Ev~~LRe~N~RLqeESqsA~~qL 32 (39)
.|..+|..|=++|.+|+-|-+---..|
T Consensus 26 ~LK~~~~el~EEN~~L~iEN~~Lr~~l 52 (110)
T PRK13169 26 ALKKQLAELLEENTALRLENDKLRERL 52 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666666544433333
No 88
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=50.94 E-value=21 Score=19.91 Aligned_cols=19 Identities=37% Similarity=0.543 Sum_probs=14.7
Q ss_pred hHHHHHHHHHHHhHHHHHH
Q psy9706 6 TLEEELKDLREENKKLKEE 24 (39)
Q Consensus 6 ~Lq~Ev~~LRe~N~RLqeE 24 (39)
.-+++++.|++++++.++-
T Consensus 56 eq~~~i~~Le~~i~~k~~~ 74 (83)
T PF07544_consen 56 EQEEEIEELEEQIRKKREV 74 (83)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4467899999998887754
No 89
>PF08961 DUF1875: Domain of unknown function (DUF1875); InterPro: IPR015056 MIT can be found in the Nuclear receptor-binding factor 2, it has no known function. ; PDB: 2CRB_A.
Probab=50.40 E-value=5.2 Score=27.72 Aligned_cols=20 Identities=50% Similarity=0.557 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHhHHHHHHH
Q psy9706 6 TLEEELKDLREENKKLKEES 25 (39)
Q Consensus 6 ~Lq~Ev~~LRe~N~RLqeES 25 (39)
.|.+|-.+||.+|++|++|-
T Consensus 140 ~L~aeNErLr~EnkqL~ae~ 159 (243)
T PF08961_consen 140 FLLAENERLRRENKQLKAEN 159 (243)
T ss_dssp --------------------
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666553
No 90
>TIGR02268 Myxococcus xanthus paralogous family TIGR02268. This family consists of at least 8 paralogs in Myxococcus xanthus, a member of the Deltaproteobacteria. The function is unknown.
Probab=49.58 E-value=20 Score=25.04 Aligned_cols=23 Identities=30% Similarity=0.525 Sum_probs=17.2
Q ss_pred hhHHHHHHHHHHHhHHHHHHHHH
Q psy9706 5 HTLEEELKDLREENKKLKEESQN 27 (39)
Q Consensus 5 ~~Lq~Ev~~LRe~N~RLqeESqs 27 (39)
.++++|+..+|..|++|.+|...
T Consensus 134 es~~~E~~~~r~~~~~~~~e~~~ 156 (295)
T TIGR02268 134 ASYQQEVVELRARNQLLEEENAR 156 (295)
T ss_pred ccchhHHHHHHHHHHHHHHHHHH
Confidence 45778888888888888877654
No 91
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=49.33 E-value=37 Score=17.45 Aligned_cols=32 Identities=19% Similarity=0.378 Sum_probs=25.4
Q ss_pred hhHHHHHHHHHHHhHHHHHHHHHHHHHHHHhh
Q psy9706 5 HTLEEELKDLREENKKLKEESQNALQQLRRFT 36 (39)
Q Consensus 5 ~~Lq~Ev~~LRe~N~RLqeESqsA~~qLrkft 36 (39)
..|.+.-.+|+.+|.+|+.|-++--+++...+
T Consensus 8 ~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~ 39 (45)
T PF02183_consen 8 DALKASYDSLKAEYDSLKKENEKLRAEVQELK 39 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778888899999999998888777776554
No 92
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=49.33 E-value=59 Score=19.76 Aligned_cols=31 Identities=29% Similarity=0.458 Sum_probs=23.9
Q ss_pred hhHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q psy9706 5 HTLEEELKDLREENKKLKEESQNALQQLRRF 35 (39)
Q Consensus 5 ~~Lq~Ev~~LRe~N~RLqeESqsA~~qLrkf 35 (39)
..++.||.+|...|+.|..+...+-.+|...
T Consensus 31 ~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~ 61 (143)
T PF12718_consen 31 EQKEQEITSLQKKNQQLEEELDKLEEQLKEA 61 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567888999999998888877777776543
No 93
>KOG2577|consensus
Probab=49.13 E-value=58 Score=23.46 Aligned_cols=33 Identities=36% Similarity=0.528 Sum_probs=29.4
Q ss_pred hhHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhh
Q psy9706 5 HTLEEELKDLREENKKLKEESQNALQQLRRFTE 37 (39)
Q Consensus 5 ~~Lq~Ev~~LRe~N~RLqeESqsA~~qLrkfte 37 (39)
..|++||..|.+.-+.|-+-...+.++|+-.||
T Consensus 147 ~~l~~e~~~L~~~E~~LD~~i~~~q~~L~~lte 179 (354)
T KOG2577|consen 147 NGLEAEVEDLSQEEDDLDQLIRDCQQNLRLLTE 179 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 458999999999999999999999999998775
No 94
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=48.63 E-value=68 Score=20.27 Aligned_cols=25 Identities=44% Similarity=0.622 Sum_probs=20.5
Q ss_pred hhHhhHHHHHHHHHHHhHHHHHHHH
Q psy9706 2 RRRHTLEEELKDLREENKKLKEESQ 26 (39)
Q Consensus 2 r~r~~Lq~Ev~~LRe~N~RLqeESq 26 (39)
..|..+.+++..|+..+..|+.|..
T Consensus 103 ~eR~~~l~~l~~l~~~~~~l~~el~ 127 (188)
T PF03962_consen 103 EEREELLEELEELKKELKELKKELE 127 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577888888888888888888877
No 95
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=48.23 E-value=49 Score=18.50 Aligned_cols=30 Identities=30% Similarity=0.384 Sum_probs=18.2
Q ss_pred hhHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy9706 5 HTLEEELKDLREENKKLKEESQNALQQLRR 34 (39)
Q Consensus 5 ~~Lq~Ev~~LRe~N~RLqeESqsA~~qLrk 34 (39)
..|.+++..+..++..|.+-...|..++-.
T Consensus 24 ~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEa 53 (65)
T TIGR02449 24 RLLRAQEKTWREERAQLLEKNEQARQKVEA 53 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666666666666666543
No 96
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=47.96 E-value=23 Score=22.00 Aligned_cols=21 Identities=43% Similarity=0.558 Sum_probs=17.5
Q ss_pred hhHHHHHHHHHHHhHHHHHHH
Q psy9706 5 HTLEEELKDLREENKKLKEES 25 (39)
Q Consensus 5 ~~Lq~Ev~~LRe~N~RLqeES 25 (39)
..|.+|++.|.=+|.-|+-..
T Consensus 6 EeLaaeL~kLqmENk~LKkkl 26 (118)
T PF05812_consen 6 EELAAELQKLQMENKALKKKL 26 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 358999999999999998543
No 97
>PF11464 Rbsn: Rabenosyn Rab binding domain; InterPro: IPR021565 Rabenosyn-5 (Rbsn) is a multivalent effector with interacts with the Rab family.Rsbn contains distinct Rab4 and Rab5 binding sites within residues 264-500 and 627-784 respectively []. Rab proteins are GTPases involved in the regulation of all stages of membrane trafficking []. ; PDB: 1Z0K_B 1YZM_A 1Z0J_B.
Probab=47.71 E-value=29 Score=18.15 Aligned_cols=18 Identities=28% Similarity=0.527 Sum_probs=15.6
Q ss_pred HHHHHHHHHhHHHHHHHH
Q psy9706 9 EELKDLREENKKLKEESQ 26 (39)
Q Consensus 9 ~Ev~~LRe~N~RLqeESq 26 (39)
+||..|..|-.-|+.|-.
T Consensus 22 dEV~~L~~NL~EL~~e~~ 39 (42)
T PF11464_consen 22 DEVATLEENLRELQDEID 39 (42)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 699999999999998854
No 98
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=47.49 E-value=59 Score=24.73 Aligned_cols=33 Identities=42% Similarity=0.636 Sum_probs=25.5
Q ss_pred hHhhHHHHHHHHHHHhHHHHHHHHHHHH---HHHHh
Q psy9706 3 RRHTLEEELKDLREENKKLKEESQNALQ---QLRRF 35 (39)
Q Consensus 3 ~r~~Lq~Ev~~LRe~N~RLqeESqsA~~---qLrkf 35 (39)
++..|+.|++.||.+-+-..|+...+-. .||++
T Consensus 546 r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~ 581 (697)
T PF09726_consen 546 RRRQLESELKKLRRELKQKEEQIRELESELQELRKY 581 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788999999999998887777666554 45655
No 99
>KOG2129|consensus
Probab=47.40 E-value=44 Score=25.56 Aligned_cols=31 Identities=26% Similarity=0.322 Sum_probs=19.5
Q ss_pred hHhhHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy9706 3 RRHTLEEELKDLREENKKLKEESQNALQQLR 33 (39)
Q Consensus 3 ~r~~Lq~Ev~~LRe~N~RLqeESqsA~~qLr 33 (39)
|-..|++||.+||-.-.|-|.+-+--.+|++
T Consensus 254 hi~~l~~EveRlrt~l~~Aqk~~~ek~~qy~ 284 (552)
T KOG2129|consen 254 HIDKLQAEVERLRTYLSRAQKSYQEKLMQYR 284 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445777887777777776665555444443
No 100
>PHA03155 hypothetical protein; Provisional
Probab=47.34 E-value=22 Score=22.18 Aligned_cols=19 Identities=53% Similarity=0.739 Sum_probs=16.6
Q ss_pred hHHHHHHHHHHHhHHHHHH
Q psy9706 6 TLEEELKDLREENKKLKEE 24 (39)
Q Consensus 6 ~Lq~Ev~~LRe~N~RLqeE 24 (39)
.|++|+.+|.=+|.-|+-.
T Consensus 12 eLaaeL~kL~~ENK~LKkk 30 (115)
T PHA03155 12 ELEKELQKLKIENKALKKK 30 (115)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5899999999999999854
No 101
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=47.25 E-value=72 Score=20.73 Aligned_cols=18 Identities=28% Similarity=0.553 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHhHHHHHH
Q psy9706 7 LEEELKDLREENKKLKEE 24 (39)
Q Consensus 7 Lq~Ev~~LRe~N~RLqeE 24 (39)
|+.|+..|++.|..|+.|
T Consensus 109 l~~e~~~l~~~~e~Le~e 126 (161)
T TIGR02894 109 LKNQNESLQKRNEELEKE 126 (161)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444433
No 102
>PF14802 TMEM192: TMEM192 family
Probab=47.07 E-value=18 Score=23.98 Aligned_cols=16 Identities=25% Similarity=0.439 Sum_probs=13.7
Q ss_pred HHHHHHHhHHHHHHHH
Q psy9706 11 LKDLREENKKLKEESQ 26 (39)
Q Consensus 11 v~~LRe~N~RLqeESq 26 (39)
|+-||++|.+|+++..
T Consensus 218 I~yLk~hn~~L~~ril 233 (236)
T PF14802_consen 218 IRYLKEHNARLSRRIL 233 (236)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6889999999998754
No 103
>KOG0982|consensus
Probab=46.06 E-value=14 Score=27.86 Aligned_cols=23 Identities=39% Similarity=0.609 Sum_probs=19.0
Q ss_pred HhhHHHHHHHHHHHhHHHHHHHH
Q psy9706 4 RHTLEEELKDLREENKKLKEESQ 26 (39)
Q Consensus 4 r~~Lq~Ev~~LRe~N~RLqeESq 26 (39)
-..|+.||++||+.|.-|.+.-.
T Consensus 405 e~eleqevkrLrq~nr~l~eqne 427 (502)
T KOG0982|consen 405 EIELEQEVKRLRQPNRILSEQNE 427 (502)
T ss_pred HHHHHHHHHHhccccchhhhhhh
Confidence 35689999999999999987643
No 104
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=45.08 E-value=35 Score=23.96 Aligned_cols=23 Identities=43% Similarity=0.722 Sum_probs=16.7
Q ss_pred hhHHHHHHHHHHHhHHHHHHHHH
Q psy9706 5 HTLEEELKDLREENKKLKEESQN 27 (39)
Q Consensus 5 ~~Lq~Ev~~LRe~N~RLqeESqs 27 (39)
..||.-++.|.++|..|.+|...
T Consensus 163 e~Lq~Klk~LEeEN~~LR~Ea~~ 185 (306)
T PF04849_consen 163 EALQEKLKSLEEENEQLRSEASQ 185 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35777788888888888777544
No 105
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=45.01 E-value=10 Score=21.29 Aligned_cols=22 Identities=50% Similarity=0.670 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHhHHHHHHHHHH
Q psy9706 7 LEEELKDLREENKKLKEESQNA 28 (39)
Q Consensus 7 Lq~Ev~~LRe~N~RLqeESqsA 28 (39)
|..++..|..+|..|+.+....
T Consensus 30 l~~~~~~l~~e~~~L~~~~~~l 51 (131)
T PF05103_consen 30 LAEELERLQRENAELKEEIEEL 51 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555554433
No 106
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=44.98 E-value=48 Score=18.67 Aligned_cols=20 Identities=40% Similarity=0.712 Sum_probs=13.1
Q ss_pred hHHHHHHHHHHHhHHHHHHH
Q psy9706 6 TLEEELKDLREENKKLKEES 25 (39)
Q Consensus 6 ~Lq~Ev~~LRe~N~RLqeES 25 (39)
.|...|..|.+.|..|+.|.
T Consensus 18 vLK~~I~eL~~~n~~Le~EN 37 (59)
T PF01166_consen 18 VLKEQIAELEERNSQLEEEN 37 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45666666777777766664
No 107
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=44.15 E-value=61 Score=21.61 Aligned_cols=28 Identities=50% Similarity=0.674 Sum_probs=16.1
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy9706 6 TLEEELKDLREENKKLKEESQNALQQLR 33 (39)
Q Consensus 6 ~Lq~Ev~~LRe~N~RLqeESqsA~~qLr 33 (39)
+|..|+.+|+..-.-|.|++.+..+|-|
T Consensus 64 ~l~eEledLk~~~~~lEE~~~~L~aq~r 91 (193)
T PF14662_consen 64 ALEEELEDLKTLAKSLEEENRSLLAQAR 91 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666666655555544
No 108
>KOG1003|consensus
Probab=44.06 E-value=60 Score=22.03 Aligned_cols=30 Identities=23% Similarity=0.289 Sum_probs=21.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhhh
Q psy9706 8 EEELKDLREENKKLKEESQNALQQLRRFTE 37 (39)
Q Consensus 8 q~Ev~~LRe~N~RLqeESqsA~~qLrkfte 37 (39)
+++|+.|+...+-|++++.+|-..|.-|++
T Consensus 3 e~~va~lnrri~~leeele~aqErl~~a~~ 32 (205)
T KOG1003|consen 3 EADVAALNRRIQLLEEELDRAQERLATALQ 32 (205)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777777777777777777666665543
No 109
>PHA03162 hypothetical protein; Provisional
Probab=43.73 E-value=27 Score=22.41 Aligned_cols=21 Identities=38% Similarity=0.502 Sum_probs=17.4
Q ss_pred hhHHHHHHHHHHHhHHHHHHH
Q psy9706 5 HTLEEELKDLREENKKLKEES 25 (39)
Q Consensus 5 ~~Lq~Ev~~LRe~N~RLqeES 25 (39)
..|.+|+..|.=+|.-|+-..
T Consensus 16 EeLaaeL~kLqmENK~LKkkl 36 (135)
T PHA03162 16 EDLAAEIAKLQLENKALKKKI 36 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 358999999999999988543
No 110
>KOG4119|consensus
Probab=43.55 E-value=63 Score=18.47 Aligned_cols=33 Identities=18% Similarity=0.295 Sum_probs=21.0
Q ss_pred hhHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhh
Q psy9706 5 HTLEEELKDLREENKKLKEESQNALQQLRRFTE 37 (39)
Q Consensus 5 ~~Lq~Ev~~LRe~N~RLqeESqsA~~qLrkfte 37 (39)
..+..+|..||-+---=..--..|+++|+.|.|
T Consensus 10 ~q~k~~VeqLk~e~~~~R~~vS~a~~el~~y~E 42 (71)
T KOG4119|consen 10 PQMKKEVEQLKLEANIERIKVSKAAAELLEYCE 42 (71)
T ss_pred HHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHH
Confidence 456677788876533223445567888888865
No 111
>KOG2077|consensus
Probab=43.25 E-value=67 Score=25.70 Aligned_cols=34 Identities=44% Similarity=0.686 Sum_probs=27.9
Q ss_pred HhhHHHHHHHHHHHhHHHHHHHHHH-------------HHHHHHhhh
Q psy9706 4 RHTLEEELKDLREENKKLKEESQNA-------------LQQLRRFTE 37 (39)
Q Consensus 4 r~~Lq~Ev~~LRe~N~RLqeESqsA-------------~~qLrkfte 37 (39)
+..||+.++.|-++.++++.|..-| .+|=|+||.
T Consensus 352 k~Klee~i~elEEElk~~k~ea~~ar~~~~~~e~ddiPmAqRkRFTR 398 (832)
T KOG2077|consen 352 KLKLEEKIRELEEELKKAKAEAEDARQKAKDDEDDDIPMAQRKRFTR 398 (832)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHhhhHH
Confidence 5678888899999999998888777 577888874
No 112
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=43.06 E-value=28 Score=20.41 Aligned_cols=11 Identities=45% Similarity=0.679 Sum_probs=6.4
Q ss_pred hhHHHHHHHHH
Q psy9706 5 HTLEEELKDLR 15 (39)
Q Consensus 5 ~~Lq~Ev~~LR 15 (39)
..|..||+-||
T Consensus 27 ~~L~eEI~~Lr 37 (86)
T PF12711_consen 27 EALKEEIQLLR 37 (86)
T ss_pred HHHHHHHHHHH
Confidence 45566666555
No 113
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=42.94 E-value=52 Score=17.32 Aligned_cols=27 Identities=30% Similarity=0.449 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy9706 7 LEEELKDLREENKKLKEESQNALQQLR 33 (39)
Q Consensus 7 Lq~Ev~~LRe~N~RLqeESqsA~~qLr 33 (39)
+++|+.+|..+-.+++.+..+....|.
T Consensus 2 ~~~E~~rL~Kel~kl~~~i~~~~~kL~ 28 (66)
T PF10458_consen 2 VEAEIERLEKELEKLEKEIERLEKKLS 28 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 577888888888888888777766663
No 114
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=42.74 E-value=61 Score=18.07 Aligned_cols=27 Identities=22% Similarity=0.300 Sum_probs=19.9
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy9706 6 TLEEELKDLREENKKLKEESQNALQQL 32 (39)
Q Consensus 6 ~Lq~Ev~~LRe~N~RLqeESqsA~~qL 32 (39)
.|..|+.+|+.++++++.....|...+
T Consensus 47 eLKve~~~L~~el~~~~~~l~~a~~~~ 73 (75)
T PF07989_consen 47 ELKVEVESLKRELQEKKKLLKEAEKAI 73 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 567788888888888887776665543
No 115
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=42.72 E-value=88 Score=19.89 Aligned_cols=23 Identities=26% Similarity=0.449 Sum_probs=12.6
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHH
Q psy9706 6 TLEEELKDLREENKKLKEESQNA 28 (39)
Q Consensus 6 ~Lq~Ev~~LRe~N~RLqeESqsA 28 (39)
.|..|+.+|...|.+|+....+.
T Consensus 60 ~l~~e~e~L~~~~~~l~~~v~~q 82 (251)
T PF11932_consen 60 QLEREIENLEVYNEQLERQVASQ 82 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666665444433
No 116
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=42.22 E-value=46 Score=22.14 Aligned_cols=21 Identities=38% Similarity=0.544 Sum_probs=16.1
Q ss_pred HhhHHHHHHHHHHHhHHHHHH
Q psy9706 4 RHTLEEELKDLREENKKLKEE 24 (39)
Q Consensus 4 r~~Lq~Ev~~LRe~N~RLqeE 24 (39)
...|+.||.+|+.||-.|=|-
T Consensus 109 ~~~L~~Ev~~L~~DN~kLYEK 129 (248)
T PF08172_consen 109 ISSLRREVESLRADNVKLYEK 129 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 456888888888888887663
No 117
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=42.22 E-value=62 Score=23.60 Aligned_cols=30 Identities=30% Similarity=0.486 Sum_probs=22.7
Q ss_pred hHhhHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy9706 3 RRHTLEEELKDLREENKKLKEESQNALQQLR 33 (39)
Q Consensus 3 ~r~~Lq~Ev~~LRe~N~RLqeESqsA~~qLr 33 (39)
.|.-||.||++||+... .-|-+.-|-+||+
T Consensus 116 ERR~lQgEmQ~LrDKLA-iaERtAkaEaQLk 145 (351)
T PF07058_consen 116 ERRFLQGEMQQLRDKLA-IAERTAKAEAQLK 145 (351)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 57789999999997643 4567777777876
No 118
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=42.19 E-value=60 Score=17.81 Aligned_cols=33 Identities=24% Similarity=0.422 Sum_probs=20.1
Q ss_pred hhHhhHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy9706 2 RRRHTLEEELKDLREENKKLKEESQNALQQLRR 34 (39)
Q Consensus 2 r~r~~Lq~Ev~~LRe~N~RLqeESqsA~~qLrk 34 (39)
|-|..++.|+...+..|.-+...-+.|-.+-+-
T Consensus 11 rakQ~~~eEL~kvk~~n~~~e~kLqeaE~rn~e 43 (61)
T PF08826_consen 11 RAKQAIQEELTKVKSANLAFESKLQEAEKRNRE 43 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446677777777777776655555555444433
No 119
>PF13942 Lipoprotein_20: YfhG lipoprotein
Probab=42.07 E-value=82 Score=20.98 Aligned_cols=33 Identities=27% Similarity=0.512 Sum_probs=26.6
Q ss_pred hhHhhHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy9706 2 RRRHTLEEELKDLREENKKLKEESQNALQQLRR 34 (39)
Q Consensus 2 r~r~~Lq~Ev~~LRe~N~RLqeESqsA~~qLrk 34 (39)
|+..+|+=.+..=|.-++|||+.|.+-..-||.
T Consensus 105 Re~Q~lql~L~eEr~Ry~rLQqssD~~lD~Lr~ 137 (179)
T PF13942_consen 105 REQQVLQLQLSEERARYQRLQQSSDSELDALRQ 137 (179)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 456677777778888899999999988877764
No 120
>PF05679 CHGN: Chondroitin N-acetylgalactosaminyltransferase; InterPro: IPR008428 This family represents Chondroitin N-acetylgalactosaminyltransferase. Proteins have a type II transmembrane topology. The enzyme is involved in the biosynthetic initiation and elongation of chondroitin sulphate and is the key enzyme responsible for the selective chain assembly of chondroitin/dermatan sulphate on the linkage region tetrasaccharide common to various proteoglycans containing chondroitin/dermatan sulphate or heparin/heparan sulphate chains. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0032580 Golgi cisterna membrane
Probab=41.71 E-value=55 Score=23.31 Aligned_cols=30 Identities=43% Similarity=0.479 Sum_probs=25.1
Q ss_pred hHhhHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy9706 3 RRHTLEEELKDLREENKKLKEESQNALQQL 32 (39)
Q Consensus 3 ~r~~Lq~Ev~~LRe~N~RLqeESqsA~~qL 32 (39)
|+..+.-|+..|+++...|++|.++.+.+|
T Consensus 77 H~y~~~~~l~~l~~~i~~L~~ei~~~s~~l 106 (499)
T PF05679_consen 77 HRYFLSLELQKLRQEIAQLQREIQNMSNQL 106 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 456678899999999999999999887755
No 121
>KOG3654|consensus
Probab=41.70 E-value=33 Score=26.89 Aligned_cols=24 Identities=42% Similarity=0.616 Sum_probs=21.1
Q ss_pred hhHhhHHHHHHHHHHHhHHHHHHH
Q psy9706 2 RRRHTLEEELKDLREENKKLKEES 25 (39)
Q Consensus 2 r~r~~Lq~Ev~~LRe~N~RLqeES 25 (39)
++|..|++|+..=|++-+|+-||-
T Consensus 409 ~rkqqleae~e~kreearrkaeee 432 (708)
T KOG3654|consen 409 RRKQQLEAEKEQKREEARRKAEEE 432 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHhh
Confidence 578899999999999999997764
No 122
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=41.29 E-value=85 Score=20.55 Aligned_cols=30 Identities=7% Similarity=0.215 Sum_probs=23.3
Q ss_pred hhHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy9706 5 HTLEEELKDLREENKKLKEESQNALQQLRR 34 (39)
Q Consensus 5 ~~Lq~Ev~~LRe~N~RLqeESqsA~~qLrk 34 (39)
..|+.||++||-.+..++=+.+..-++-|.
T Consensus 64 ~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~ 93 (263)
T PRK10803 64 SDNQSDIDSLRGQIQENQYQLNQVVERQKQ 93 (263)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 468999999999988888777776655443
No 123
>KOG0646|consensus
Probab=40.35 E-value=77 Score=23.90 Aligned_cols=31 Identities=32% Similarity=0.428 Sum_probs=23.9
Q ss_pred hHhhHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy9706 3 RRHTLEEELKDLREENKKLKEESQNALQQLR 33 (39)
Q Consensus 3 ~r~~Lq~Ev~~LRe~N~RLqeESqsA~~qLr 33 (39)
+...+++||++|+.++.|+-+-+-.|--+++
T Consensus 429 ~s~~~e~e~~rl~~e~k~~~q~~~~~~k~~~ 459 (476)
T KOG0646|consen 429 RSLELEAEVDRLKTELKRSLQALTHAYKELR 459 (476)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 4678999999999999998776666655544
No 124
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=40.30 E-value=51 Score=18.33 Aligned_cols=19 Identities=37% Similarity=0.693 Sum_probs=15.5
Q ss_pred hhHHHHHHHHHHHhHHHHH
Q psy9706 5 HTLEEELKDLREENKKLKE 23 (39)
Q Consensus 5 ~~Lq~Ev~~LRe~N~RLqe 23 (39)
..+..|+.+|+..|..|+.
T Consensus 15 e~~~~e~~~L~~~~~~L~~ 33 (100)
T PF01486_consen 15 EELQQEIAKLRKENESLQK 33 (100)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4678899999999988873
No 125
>PF01025 GrpE: GrpE; InterPro: IPR000740 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolysing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. In prokaryotes the grpE protein. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. The X-ray crystal structure of GrpE in complex with the ATPase domain of DnaK revealed that GrpE is an asymmetric homodimer, bent in a manner that favours extensive contacts with only one DnaKATPase monomer []. GrpE does not actively compete for the atomic positions occupied by the nucleotide. GrpE and ADP mutually reduce one another's affinity for DnaK 200-fold, and ATP instantly dissociates GrpE from DnaK.; GO: 0000774 adenyl-nucleotide exchange factor activity, 0042803 protein homodimerization activity, 0051087 chaperone binding, 0006457 protein folding; PDB: 3A6M_A 4ANI_A 1DKG_B.
Probab=39.80 E-value=78 Score=18.49 Aligned_cols=28 Identities=32% Similarity=0.502 Sum_probs=16.9
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy9706 6 TLEEELKDLREENKKLKEESQNALQQLR 33 (39)
Q Consensus 6 ~Lq~Ev~~LRe~N~RLqeESqsA~~qLr 33 (39)
.|+.++..|.+...|+..+.+..-..+.
T Consensus 22 ~l~~~~~~l~~~~~r~~ae~en~~~r~~ 49 (165)
T PF01025_consen 22 ELEKEIEELKERLLRLQAEFENYRKRLE 49 (165)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666677776666666666555544443
No 126
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=39.67 E-value=54 Score=16.58 Aligned_cols=20 Identities=40% Similarity=0.584 Sum_probs=12.0
Q ss_pred hHHHHHHHHHHHhHHHHHHH
Q psy9706 6 TLEEELKDLREENKKLKEES 25 (39)
Q Consensus 6 ~Lq~Ev~~LRe~N~RLqeES 25 (39)
.+..++++++.+..+++.|.
T Consensus 45 ~~r~~~~~~~k~l~~le~e~ 64 (68)
T PF06305_consen 45 RLRRRIRRLRKELKKLEKEL 64 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666554
No 127
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=39.58 E-value=56 Score=24.38 Aligned_cols=22 Identities=36% Similarity=0.511 Sum_probs=14.6
Q ss_pred hHHHHHHHHHHHhHHHHHHHHH
Q psy9706 6 TLEEELKDLREENKKLKEESQN 27 (39)
Q Consensus 6 ~Lq~Ev~~LRe~N~RLqeESqs 27 (39)
.+..+++.|..+|.+|++|...
T Consensus 70 ~~r~~~~~l~~~N~~l~~eN~~ 91 (472)
T TIGR03752 70 ELRKRLAKLISENEALKAENER 91 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666777777777777653
No 128
>PF07439 DUF1515: Protein of unknown function (DUF1515); InterPro: IPR010889 This family consists of several hypothetical bacterial proteins of around 130 residues in length. Members of this family seem to be found exclusively in Rhizobium species. The function of this family is unknown.
Probab=39.57 E-value=50 Score=20.62 Aligned_cols=20 Identities=40% Similarity=0.679 Sum_probs=15.5
Q ss_pred hHHHHHHHHHHHhHHHHHHH
Q psy9706 6 TLEEELKDLREENKKLKEES 25 (39)
Q Consensus 6 ~Lq~Ev~~LRe~N~RLqeES 25 (39)
.|+++|.+||++-+|-.+-|
T Consensus 12 ~l~~~v~~lRed~r~SEdrs 31 (112)
T PF07439_consen 12 TLNAEVKELREDIRRSEDRS 31 (112)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 58899999999998544443
No 129
>cd04766 HTH_HspR Helix-Turn-Helix DNA binding domain of the HspR transcription regulator. Helix-turn-helix (HTH) transcription regulator HspR, N-terminal domain. Heat shock protein regulators (HspR) have been shown to regulate expression of specific regulons in response to high temperature or high osmolarity in Streptomyces and Helicobacter, respectively. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=39.51 E-value=48 Score=17.95 Aligned_cols=19 Identities=47% Similarity=0.686 Sum_probs=11.6
Q ss_pred hHHHHHHHHHHHhHHHHHH
Q psy9706 6 TLEEELKDLREENKKLKEE 24 (39)
Q Consensus 6 ~Lq~Ev~~LRe~N~RLqeE 24 (39)
.|..++..|+.++.+|++.
T Consensus 69 ~l~~~~~~l~~~l~~l~~~ 87 (91)
T cd04766 69 ELEEELAELRAELDELRAR 87 (91)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3556666666666666554
No 130
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=39.42 E-value=63 Score=18.59 Aligned_cols=27 Identities=33% Similarity=0.454 Sum_probs=13.5
Q ss_pred hhHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy9706 5 HTLEEELKDLREENKKLKEESQNALQQL 32 (39)
Q Consensus 5 ~~Lq~Ev~~LRe~N~RLqeESqsA~~qL 32 (39)
+.||+||.+|.-+-.+ +.-|-+|++-|
T Consensus 35 alLq~EIeRlkAe~~k-K~~srsAAeaL 61 (65)
T COG5509 35 ALLQAEIERLKAELAK-KKASRSAAEAL 61 (65)
T ss_pred HHHHHHHHHHHHHHHh-hhccHHHHHHH
Confidence 3455555555443322 23456666654
No 131
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=39.22 E-value=26 Score=20.48 Aligned_cols=14 Identities=64% Similarity=0.757 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHhHH
Q psy9706 7 LEEELKDLREENKK 20 (39)
Q Consensus 7 Lq~Ev~~LRe~N~R 20 (39)
.+.|...||.+|++
T Consensus 55 ~E~eL~~LrkENrK 68 (85)
T PF15188_consen 55 NEKELKLLRKENRK 68 (85)
T ss_pred cHHHHHHHHHhhhh
Confidence 35667778888875
No 132
>PF06990 Gal-3-0_sulfotr: Galactose-3-O-sulfotransferase ; InterPro: IPR009729 This family consists of several mammalian galactose-3-O-sulphotransferase proteins. Gal-3-O-sulphotransferase is thought to play a critical role in 3'-sulphation of N-acetyllactosamine in both O- and N-glycans [].; GO: 0001733 galactosylceramide sulfotransferase activity, 0009058 biosynthetic process, 0005794 Golgi apparatus, 0016021 integral to membrane
Probab=38.45 E-value=45 Score=23.41 Aligned_cols=20 Identities=40% Similarity=0.705 Sum_probs=17.2
Q ss_pred hHHHHHHHHHHHhHHHHHHH
Q psy9706 6 TLEEELKDLREENKKLKEES 25 (39)
Q Consensus 6 ~Lq~Ev~~LRe~N~RLqeES 25 (39)
.++.||+.||+-|+++++.-
T Consensus 319 ~~~~Ev~~lr~~~~~l~~~C 338 (402)
T PF06990_consen 319 RFEREVAELRERNQELQERC 338 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 47899999999999998754
No 133
>PF12896 Apc4: Anaphase-promoting complex, cyclosome, subunit 4; InterPro: IPR024790 Apc4 is one of the larger of the subunits of the anaphase-promoting complex (APC) or cyclosome. The anaphase-promoting complex is a multiprotein subunit E3 ubiquitin ligase complex that controls segregation of chromosomes and exit from mitosis in eukaryotes [, ]. Results in Caenorhabditis elegans show that the primary essential role of the spindle assembly checkpoint is not in the chromosome segregation process itself but rather in delaying anaphase onset until all chromosomes are properly attached to the spindle. The APC is likely to be required for all metaphase-to-anaphase transitions in a multicellular organism []. This entry represents the long domain downstream of the WD40 repeat/s that are present on the Apc4 subunits.
Probab=37.67 E-value=94 Score=18.75 Aligned_cols=33 Identities=21% Similarity=0.380 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhcC
Q psy9706 7 LEEELKDLREENKKLKEESQNALQQLRRFTEWT 39 (39)
Q Consensus 7 Lq~Ev~~LRe~N~RLqeESqsA~~qLrkftew~ 39 (39)
+...+..+-....++.........+.+.|..|+
T Consensus 164 ~~~~~~~l~~~~~~l~~~i~~~~~~f~~F~~WL 196 (210)
T PF12896_consen 164 LLDAAQSLLLKAHELLQVINRELKQFKAFFSWL 196 (210)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667777777888889999999999999995
No 134
>KOG4196|consensus
Probab=37.46 E-value=1.1e+02 Score=19.67 Aligned_cols=30 Identities=37% Similarity=0.594 Sum_probs=25.2
Q ss_pred hHhhHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy9706 3 RRHTLEEELKDLREENKKLKEESQNALQQL 32 (39)
Q Consensus 3 ~r~~Lq~Ev~~LRe~N~RLqeESqsA~~qL 32 (39)
-|+.||++-..|+++-..|.+|.......|
T Consensus 75 Qk~eLE~~k~~L~qqv~~L~~e~s~~~~E~ 104 (135)
T KOG4196|consen 75 QKHELEKEKAELQQQVEKLKEENSRLRREL 104 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478899999999999999999987766544
No 135
>PRK09039 hypothetical protein; Validated
Probab=36.86 E-value=97 Score=21.18 Aligned_cols=28 Identities=14% Similarity=0.210 Sum_probs=20.1
Q ss_pred hhHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy9706 5 HTLEEELKDLREENKKLKEESQNALQQL 32 (39)
Q Consensus 5 ~~Lq~Ev~~LRe~N~RLqeESqsA~~qL 32 (39)
..|+.||..||.....|+.+...+-++.
T Consensus 140 ~~L~~qI~aLr~Qla~le~~L~~ae~~~ 167 (343)
T PRK09039 140 ELLNQQIAALRRQLAALEAALDASEKRD 167 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577888888888888887666655544
No 136
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=36.57 E-value=62 Score=25.11 Aligned_cols=26 Identities=35% Similarity=0.423 Sum_probs=19.5
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy9706 8 EEELKDLREENKKLKEESQNALQQLR 33 (39)
Q Consensus 8 q~Ev~~LRe~N~RLqeESqsA~~qLr 33 (39)
|.|...|+.++.||.||.+-.-.||-
T Consensus 120 QvefE~~Khei~rl~Ee~~~l~~qle 145 (717)
T PF09730_consen 120 QVEFEGLKHEIKRLEEEIELLNSQLE 145 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777889999999887766653
No 137
>KOG4571|consensus
Probab=36.53 E-value=1e+02 Score=21.90 Aligned_cols=29 Identities=24% Similarity=0.445 Sum_probs=22.4
Q ss_pred hHhhHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy9706 3 RRHTLEEELKDLREENKKLKEESQNALQQ 31 (39)
Q Consensus 3 ~r~~Lq~Ev~~LRe~N~RLqeESqsA~~q 31 (39)
.+..|..|..-|-..|.+|++..++-.--
T Consensus 249 e~E~l~ge~~~Le~rN~~LK~qa~~lerE 277 (294)
T KOG4571|consen 249 EKEALLGELEGLEKRNEELKDQASELERE 277 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678889999999999999877665433
No 138
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=36.28 E-value=1.1e+02 Score=21.01 Aligned_cols=35 Identities=23% Similarity=0.432 Sum_probs=27.8
Q ss_pred hHhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhh
Q psy9706 3 RRHTLEEELKDLREENKKLKEESQNALQQLRRFTE 37 (39)
Q Consensus 3 ~r~~Lq~Ev~~LRe~N~RLqeESqsA~~qLrkfte 37 (39)
.+..++.|+..+|++|.+.-.|--.+.++.++--.
T Consensus 114 ~k~~~~~ei~k~r~e~~~ml~evK~~~E~y~k~~k 148 (230)
T PF03904_consen 114 LKNIAQNEIKKVREENKSMLQEVKQSHEKYQKRQK 148 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678888999999999988888888887766443
No 139
>KOG0612|consensus
Probab=36.06 E-value=83 Score=26.51 Aligned_cols=36 Identities=22% Similarity=0.333 Sum_probs=29.3
Q ss_pred hhHhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhcC
Q psy9706 2 RRRHTLEEELKDLREENKKLKEESQNALQQLRRFTEWT 39 (39)
Q Consensus 2 r~r~~Lq~Ev~~LRe~N~RLqeESqsA~~qLrkftew~ 39 (39)
+...+++.+++++.-+|+|+ +.+.+.+|...+..|+
T Consensus 674 ~~lk~~q~~~eq~~~E~~~~--~L~~~e~~~~e~~~~l 709 (1317)
T KOG0612|consen 674 RKLKMLQNELEQENAEHHRL--RLQDKEAQMKEIESKL 709 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHhhHHHHHHHHHHHh
Confidence 34568899999999999999 7777788888887775
No 140
>COG2841 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.03 E-value=91 Score=18.15 Aligned_cols=24 Identities=29% Similarity=0.556 Sum_probs=20.1
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHH
Q psy9706 8 EEELKDLREENKKLKEESQNALQQ 31 (39)
Q Consensus 8 q~Ev~~LRe~N~RLqeESqsA~~q 31 (39)
.+||.+|+..--+|++|..+..+.
T Consensus 45 ~~ev~~LKKqkL~LKDEi~~~L~~ 68 (72)
T COG2841 45 DAEVSNLKKQKLQLKDEIASILQK 68 (72)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHH
Confidence 579999999999999998877553
No 141
>PF01812 5-FTHF_cyc-lig: 5-formyltetrahydrofolate cyclo-ligase family; InterPro: IPR002698 5-formyltetrahydrofolate cyclo-ligase or methenyl-THF synthetase 6.3.3.2 from EC catalyses the interchange of 5-formyltetrahydrofolate (5-FTHF) to 5-10-methenyltetrahydrofolate, this requires ATP and Mg2+ []. 5-FTHF is used in chemotherapy where it is clinically known as Leucovorin [].; GO: 0005524 ATP binding, 0030272 5-formyltetrahydrofolate cyclo-ligase activity, 0009396 folic acid-containing compound biosynthetic process; PDB: 1WKC_A 1SBQ_A 1U3G_A 1U3F_B 1YDM_B 1SOU_A 2JCB_B 3HY6_A 3HY4_A 3HXT_A ....
Probab=35.68 E-value=91 Score=18.51 Aligned_cols=35 Identities=23% Similarity=0.347 Sum_probs=22.3
Q ss_pred HhhHHHHHHHHHHHhH--HHHHHHHHHHHHHHHhhhc
Q psy9706 4 RHTLEEELKDLREENK--KLKEESQNALQQLRRFTEW 38 (39)
Q Consensus 4 r~~Lq~Ev~~LRe~N~--RLqeESqsA~~qLrkftew 38 (39)
|..|-.++...|.... ...+.|+....+|..|..|
T Consensus 1 K~~lR~~~~~~r~~l~~~~~~~~s~~i~~~l~~~~~~ 37 (186)
T PF01812_consen 1 KKELRKEIRARRRALSPEERAEASQAICERLLALPEY 37 (186)
T ss_dssp HHHHHHHHHHHHHTS-HHHHHHHHHHHHHHHHCCHHH
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhChhh
Confidence 4566677777776644 4456677777777776654
No 142
>PRK14164 heat shock protein GrpE; Provisional
Probab=35.52 E-value=1.2e+02 Score=20.09 Aligned_cols=25 Identities=24% Similarity=0.339 Sum_probs=17.9
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHH
Q psy9706 6 TLEEELKDLREENKKLKEESQNALQ 30 (39)
Q Consensus 6 ~Lq~Ev~~LRe~N~RLqeESqsA~~ 30 (39)
.|++++..|.+...|++.|.++.-.
T Consensus 81 ~le~el~el~d~llR~~AE~eN~Rk 105 (218)
T PRK14164 81 TVEAQLAERTEDLQRVTAEYANYRR 105 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677778888888888777766543
No 143
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=35.13 E-value=1.1e+02 Score=18.94 Aligned_cols=34 Identities=24% Similarity=0.475 Sum_probs=28.9
Q ss_pred hHhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHhh
Q psy9706 3 RRHTLEEELKDLREENKKLKEESQNALQQLRRFT 36 (39)
Q Consensus 3 ~r~~Lq~Ev~~LRe~N~RLqeESqsA~~qLrkft 36 (39)
.+..+.+-+..|+.+-+.-|++.++.+..|..|-
T Consensus 104 ~~~~~~~~i~~L~~~i~~~q~~~~~~i~~L~~f~ 137 (184)
T PF05791_consen 104 DKEDLKEIIEDLQDQIQKNQDKVQALINELNDFK 137 (184)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566778888999999999999999999999984
No 144
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=35.12 E-value=1.3e+02 Score=22.86 Aligned_cols=28 Identities=36% Similarity=0.557 Sum_probs=18.0
Q ss_pred HhhHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy9706 4 RHTLEEELKDLREENKKLKEESQNALQQ 31 (39)
Q Consensus 4 r~~Lq~Ev~~LRe~N~RLqeESqsA~~q 31 (39)
...|+.++..|+..+.+|+.+....-..
T Consensus 159 ~~~Le~e~~~l~~~v~~l~~eL~~~~ee 186 (546)
T PF07888_consen 159 NEQLEEEVEQLREEVERLEAELEQEEEE 186 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567777777777777777665554433
No 145
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=35.05 E-value=70 Score=23.82 Aligned_cols=17 Identities=47% Similarity=0.499 Sum_probs=8.2
Q ss_pred HHHHHHHHhHHHHHHHH
Q psy9706 10 ELKDLREENKKLKEESQ 26 (39)
Q Consensus 10 Ev~~LRe~N~RLqeESq 26 (39)
|..-||++|.+|+.|..
T Consensus 33 e~~aLr~EN~~LKkEN~ 49 (420)
T PF07407_consen 33 ENFALRMENHSLKKENN 49 (420)
T ss_pred hhhhHHHHhHHHHHHHH
Confidence 34445555555554443
No 146
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=35.04 E-value=1.3e+02 Score=20.70 Aligned_cols=30 Identities=37% Similarity=0.505 Sum_probs=25.2
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q psy9706 6 TLEEELKDLREENKKLKEESQNALQQLRRF 35 (39)
Q Consensus 6 ~Lq~Ev~~LRe~N~RLqeESqsA~~qLrkf 35 (39)
.|-.||..|++....|++....|-..|+..
T Consensus 321 ~L~~Ev~~l~~~i~~L~~~L~~a~~~l~~L 350 (384)
T PF03148_consen 321 GLIEEVKELRESIEALQEKLDEAEASLQKL 350 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999999998887777766654
No 147
>PRK14161 heat shock protein GrpE; Provisional
Probab=32.84 E-value=1.3e+02 Score=19.11 Aligned_cols=22 Identities=23% Similarity=0.450 Sum_probs=12.1
Q ss_pred hHHHHHHHHHHHhHHHHHHHHH
Q psy9706 6 TLEEELKDLREENKKLKEESQN 27 (39)
Q Consensus 6 ~Lq~Ev~~LRe~N~RLqeESqs 27 (39)
.|++|+..|++...|++.|..+
T Consensus 30 ~l~~e~~elkd~~lR~~AefeN 51 (178)
T PRK14161 30 ALKAEIEELKDKLIRTTAEIDN 51 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555555555555555443
No 148
>PRK15396 murein lipoprotein; Provisional
Probab=32.67 E-value=1e+02 Score=17.64 Aligned_cols=26 Identities=23% Similarity=0.457 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy9706 7 LEEELKDLREENKKLKEESQNALQQL 32 (39)
Q Consensus 7 Lq~Ev~~LRe~N~RLqeESqsA~~qL 32 (39)
|..++..+|.+-+--++|...|.++|
T Consensus 44 l~~dv~~~~~~~~~a~~eA~raN~Rl 69 (78)
T PRK15396 44 LSNDVNAMRSDVQAAKDDAARANQRL 69 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555556666666655
No 149
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=32.59 E-value=1.6e+02 Score=19.91 Aligned_cols=31 Identities=39% Similarity=0.567 Sum_probs=19.7
Q ss_pred hhHhhHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy9706 2 RRRHTLEEELKDLREENKKLKEESQNALQQL 32 (39)
Q Consensus 2 r~r~~Lq~Ev~~LRe~N~RLqeESqsA~~qL 32 (39)
++...|+.|+..|.+.-..|+++-.....++
T Consensus 103 ~r~~~le~el~~l~~~~~~l~~~i~~l~~~~ 133 (239)
T COG1579 103 ERINSLEDELAELMEEIEKLEKEIEDLKERL 133 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556677777777777777766655544444
No 150
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=32.48 E-value=1.1e+02 Score=18.06 Aligned_cols=23 Identities=39% Similarity=0.551 Sum_probs=13.5
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHH
Q psy9706 6 TLEEELKDLREENKKLKEESQNA 28 (39)
Q Consensus 6 ~Lq~Ev~~LRe~N~RLqeESqsA 28 (39)
.|+.++..|.++|-+|+-+..++
T Consensus 53 ~L~~e~~~l~~E~e~L~~~l~~e 75 (87)
T PF12709_consen 53 ELENENKALKRENEQLKKKLDTE 75 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666544443
No 151
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=32.19 E-value=1.3e+02 Score=21.15 Aligned_cols=28 Identities=14% Similarity=0.309 Sum_probs=21.9
Q ss_pred hhHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy9706 5 HTLEEELKDLREENKKLKEESQNALQQL 32 (39)
Q Consensus 5 ~~Lq~Ev~~LRe~N~RLqeESqsA~~qL 32 (39)
..|+++++.|+.+-.+++++...+.+++
T Consensus 74 ~~l~~~l~~l~~~~~~~~~~~~~~~~~~ 101 (525)
T TIGR02231 74 AELRKQIRELEAELRDLEDRGDALKALA 101 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888888888888888777666665
No 152
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.79 E-value=1.7e+02 Score=20.09 Aligned_cols=32 Identities=22% Similarity=0.318 Sum_probs=21.4
Q ss_pred HhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q psy9706 4 RHTLEEELKDLREENKKLKEESQNALQQLRRF 35 (39)
Q Consensus 4 r~~Lq~Ev~~LRe~N~RLqeESqsA~~qLrkf 35 (39)
...|..|++++++.-..|+.|-......+..+
T Consensus 52 ~~~L~~e~~s~Q~~~~~L~~ev~~~~~~~~s~ 83 (247)
T COG3879 52 DLDLVKELRSLQKKVNTLAAEVEDLENKLDSV 83 (247)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677788888888777877665555555444
No 153
>PF12037 DUF3523: Domain of unknown function (DUF3523); InterPro: IPR021911 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 257 to 277 amino acids in length. This domain is found associated with PF00004 from PFAM. This domain has a conserved LER sequence motif.
Probab=31.73 E-value=1.8e+02 Score=20.22 Aligned_cols=23 Identities=48% Similarity=0.482 Sum_probs=18.9
Q ss_pred HHHhHHHHHHHHHHHHHHHHhhh
Q psy9706 15 REENKKLKEESQNALQQLRRFTE 37 (39)
Q Consensus 15 Re~N~RLqeESqsA~~qLrkfte 37 (39)
.+++-++||||.-=-+++|+=|+
T Consensus 131 n~e~lk~QEes~~rqE~~Rr~Te 153 (276)
T PF12037_consen 131 NEELLKMQEESVIRQEQMRRATE 153 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34778999999998899998773
No 154
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=31.60 E-value=64 Score=18.23 Aligned_cols=16 Identities=38% Similarity=0.742 Sum_probs=13.1
Q ss_pred hhHhhHHHHHHHHHHH
Q psy9706 2 RRRHTLEEELKDLREE 17 (39)
Q Consensus 2 r~r~~Lq~Ev~~LRe~ 17 (39)
.+|..|+.||..|...
T Consensus 8 ~~r~~LeqeV~~Lq~~ 23 (88)
T PF14389_consen 8 ERRSALEQEVAELQKQ 23 (88)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 4688999999999864
No 155
>PF09544 DUF2381: Protein of unknown function (DUF2381); InterPro: IPR011754 This family consists of at least 8 paralogs in Myxococcus xanthus, a member of the Deltaproteobacteria. The function is unknown.
Probab=31.05 E-value=82 Score=21.27 Aligned_cols=21 Identities=33% Similarity=0.571 Sum_probs=10.8
Q ss_pred hHHHHHHHHHHHhHHHHHHHH
Q psy9706 6 TLEEELKDLREENKKLKEESQ 26 (39)
Q Consensus 6 ~Lq~Ev~~LRe~N~RLqeESq 26 (39)
++++|+...|-.++++.+|.+
T Consensus 131 ~~~~e~~~~r~~~~~~~~e~~ 151 (289)
T PF09544_consen 131 SCQAELLEARAEAQELREENE 151 (289)
T ss_pred hhHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555443
No 156
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=31.04 E-value=73 Score=18.30 Aligned_cols=17 Identities=35% Similarity=0.446 Sum_probs=10.3
Q ss_pred HHHHHHHHHHhHHHHHH
Q psy9706 8 EEELKDLREENKKLKEE 24 (39)
Q Consensus 8 q~Ev~~LRe~N~RLqeE 24 (39)
+.|...|+.+|+=||+=
T Consensus 43 k~E~~kL~~EN~~Lq~Y 59 (80)
T PF10224_consen 43 KEENEKLESENEYLQQY 59 (80)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45556666666666653
No 157
>COG3851 UhpB Signal transduction histidine kinase, glucose-6-phosphate specific [Signal transduction mechanisms]
Probab=30.88 E-value=58 Score=24.70 Aligned_cols=26 Identities=31% Similarity=0.377 Sum_probs=18.5
Q ss_pred HHHHHHHHHHhHHHHHHHH---HHHHHHH
Q psy9706 8 EEELKDLREENKKLKEESQ---NALQQLR 33 (39)
Q Consensus 8 q~Ev~~LRe~N~RLqeESq---sA~~qLr 33 (39)
=.-+++||+-||||+.|-. .-++||-
T Consensus 268 GiaIqrlrelnqrL~~EL~~~raLaeqLi 296 (497)
T COG3851 268 GIAIQRLRELNQRLQKELARNRALAEQLI 296 (497)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 3467899999999998753 3445553
No 158
>PF07321 YscO: Type III secretion protein YscO; InterPro: IPR009929 This family contains the bacterial type III secretion protein YscO, which is approximately 150 residues long. YscO has been shown to be required for high-level expression and secretion of the anti-host proteins V antigen and Yops in Yersinia pestis [].
Probab=30.11 E-value=1.4e+02 Score=18.61 Aligned_cols=28 Identities=25% Similarity=0.435 Sum_probs=19.9
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy9706 6 TLEEELKDLREENKKLKEESQNALQQLR 33 (39)
Q Consensus 6 ~Lq~Ev~~LRe~N~RLqeESqsA~~qLr 33 (39)
...++|..||++-.+|......|..++.
T Consensus 71 ~~~~qv~~Lr~~e~~le~~~~~a~~~~~ 98 (152)
T PF07321_consen 71 KWQQQVASLREREAELEQQLAEAEEQLE 98 (152)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 4567888888888888776666665554
No 159
>KOG4036|consensus
Probab=30.07 E-value=64 Score=22.42 Aligned_cols=29 Identities=41% Similarity=0.681 Sum_probs=23.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhhh
Q psy9706 9 EELKDLREENKKLKEESQNALQQLRRFTE 37 (39)
Q Consensus 9 ~Ev~~LRe~N~RLqeESqsA~~qLrkfte 37 (39)
.++..||-+-..++.++.+--++|++||-
T Consensus 101 ~~Lkel~~~~~k~~~q~~nkke~lkk~ta 129 (236)
T KOG4036|consen 101 EELKELRNSKRKYERQLANKKEQLKKFTA 129 (236)
T ss_pred HHHHHHHHHHHHHhhccccHHHHHhhhhH
Confidence 46788887777788888888899999984
No 160
>KOG3819|consensus
Probab=30.04 E-value=34 Score=26.04 Aligned_cols=18 Identities=33% Similarity=0.737 Sum_probs=15.2
Q ss_pred HHHHHHHHHhHHHHHHHH
Q psy9706 9 EELKDLREENKKLKEESQ 26 (39)
Q Consensus 9 ~Ev~~LRe~N~RLqeESq 26 (39)
.||+-|.+.||+||++-+
T Consensus 86 ~eir~lK~~nqKlq~~nq 103 (513)
T KOG3819|consen 86 GEIRGLKDANQKLQQDNQ 103 (513)
T ss_pred cccchHHHHHHHHHHHHH
Confidence 578889999999998765
No 161
>KOG4005|consensus
Probab=30.01 E-value=96 Score=22.14 Aligned_cols=24 Identities=33% Similarity=0.421 Sum_probs=15.2
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHH
Q psy9706 6 TLEEELKDLREENKKLKEESQNAL 29 (39)
Q Consensus 6 ~Lq~Ev~~LRe~N~RLqeESqsA~ 29 (39)
.|.+|-+.|+-+|++|++...+-.
T Consensus 101 dL~een~~L~~en~~Lr~~n~~L~ 124 (292)
T KOG4005|consen 101 DLTEENEILQNENDSLRAINESLL 124 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466677777777777766554443
No 162
>PRK05892 nucleoside diphosphate kinase regulator; Provisional
Probab=29.99 E-value=1.2e+02 Score=18.66 Aligned_cols=22 Identities=41% Similarity=0.549 Sum_probs=14.6
Q ss_pred HhhHHHHHHHHHHHhHHHHHHH
Q psy9706 4 RHTLEEELKDLREENKKLKEES 25 (39)
Q Consensus 4 r~~Lq~Ev~~LRe~N~RLqeES 25 (39)
...|++|+..|+..-..+-++.
T Consensus 13 ~~~L~~EL~~L~~~r~~i~~~i 34 (158)
T PRK05892 13 RDHLEAELARLRARRDRLAVEV 34 (158)
T ss_pred HHHHHHHHHHHHHHhHHHHHHH
Confidence 4578999999987544444443
No 163
>PF12548 DUF3740: Sulfatase protein; InterPro: IPR024609 This uncharacterised domain is found in the C-terminal region of extracellular sulphatase proteins.
Probab=29.55 E-value=91 Score=19.49 Aligned_cols=22 Identities=32% Similarity=0.572 Sum_probs=18.7
Q ss_pred hhHhhHHHHHHHHHHHhHHHHH
Q psy9706 2 RRRHTLEEELKDLREENKKLKE 23 (39)
Q Consensus 2 r~r~~Lq~Ev~~LRe~N~RLqe 23 (39)
.+|..+..||+.|+....-|+|
T Consensus 106 ~hr~~ID~eIe~Lq~Ki~~LKe 127 (145)
T PF12548_consen 106 DHRLHIDHEIETLQDKIKNLKE 127 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4788899999999998888876
No 164
>PRK14142 heat shock protein GrpE; Provisional
Probab=29.28 E-value=1.7e+02 Score=19.72 Aligned_cols=24 Identities=13% Similarity=0.300 Sum_probs=17.5
Q ss_pred hhHHHHHHHHHHHhHHHHHHHHHH
Q psy9706 5 HTLEEELKDLREENKKLKEESQNA 28 (39)
Q Consensus 5 ~~Lq~Ev~~LRe~N~RLqeESqsA 28 (39)
+.+.+|+..|+....|++.|.++.
T Consensus 43 ~~~~~e~~elkdk~lR~~AEfEN~ 66 (223)
T PRK14142 43 AHTEDKVAELTADLQRVQADFANY 66 (223)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 356778888888888887776654
No 165
>PF02370 M: M protein repeat; InterPro: IPR003345 This short repeat is found in multiple copies in bacterial M proteins. The M proteins bind to IgA and are closely associated with virulence. The M protein has been postulated to be a major group A streptococcal (GAS) virulence factor because of its contribution to the bacterial resistance to opsonophagocytosis [].; PDB: 2KK9_A.
Probab=28.80 E-value=71 Score=14.70 Aligned_cols=18 Identities=22% Similarity=0.368 Sum_probs=13.6
Q ss_pred HhhHHHHHHHHHHHhHHH
Q psy9706 4 RHTLEEELKDLREENKKL 21 (39)
Q Consensus 4 r~~Lq~Ev~~LRe~N~RL 21 (39)
|..|+++.+.|-.+.|-+
T Consensus 3 kk~lEa~~qkLe~e~q~~ 20 (21)
T PF02370_consen 3 KKQLEADHQKLEAEKQIS 20 (21)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 567888888888777654
No 166
>PRK14155 heat shock protein GrpE; Provisional
Probab=28.78 E-value=1.7e+02 Score=19.13 Aligned_cols=23 Identities=22% Similarity=0.469 Sum_probs=15.3
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHH
Q psy9706 6 TLEEELKDLREENKKLKEESQNA 28 (39)
Q Consensus 6 ~Lq~Ev~~LRe~N~RLqeESqsA 28 (39)
.|++|+..|.+...|++.|.++.
T Consensus 24 ~le~e~~elkd~~lR~~AefeN~ 46 (208)
T PRK14155 24 ALKAEVAALKDQALRYAAEAENT 46 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 46667777777777777666544
No 167
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=28.64 E-value=60 Score=24.18 Aligned_cols=22 Identities=23% Similarity=0.374 Sum_probs=12.5
Q ss_pred HhhHHHHHHHHHHHhHHHHHHH
Q psy9706 4 RHTLEEELKDLREENKKLKEES 25 (39)
Q Consensus 4 r~~Lq~Ev~~LRe~N~RLqeES 25 (39)
+..+++.|..|..+|++|+++-
T Consensus 99 ~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 99 RGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred hhhHHHHHHHHHHHHHHHHHHH
Confidence 3445555556666666665553
No 168
>PF01527 HTH_Tnp_1: Transposase; InterPro: IPR002514 Transposase proteins are necessary for efficient DNA transposition. This family consists of various Escherichia coli insertion elements and other bacterial transposases some of which are members of the IS3 family. This region includes a helix-turn-helix motif (HTH) at the N terminus followed by a leucine zipper (LZ) motif. The LZ motif has been shown to mediate oligomerisation of the transposase components in IS911 []. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated; PDB: 2JN6_A 2RN7_A.
Probab=28.40 E-value=17 Score=18.44 Aligned_cols=15 Identities=40% Similarity=0.722 Sum_probs=7.4
Q ss_pred hHHHHHHHHHHHhHH
Q psy9706 6 TLEEELKDLREENKK 20 (39)
Q Consensus 6 ~Lq~Ev~~LRe~N~R 20 (39)
.++.|++.|+..|.|
T Consensus 62 ~~~~e~~~L~~~~~r 76 (76)
T PF01527_consen 62 ELEKEIRELRRELAR 76 (76)
T ss_dssp HTHCHHHHHCH-GG-
T ss_pred hHHHHHHHHHHHhcC
Confidence 345566666665543
No 169
>KOG1853|consensus
Probab=28.03 E-value=1e+02 Score=22.35 Aligned_cols=24 Identities=25% Similarity=0.516 Sum_probs=18.1
Q ss_pred hHhhHHHHHHHHHHHhHHHHHHHH
Q psy9706 3 RRHTLEEELKDLREENKKLKEESQ 26 (39)
Q Consensus 3 ~r~~Lq~Ev~~LRe~N~RLqeESq 26 (39)
.|.+|..+|++|+++-+-|..|.+
T Consensus 158 Eke~llesvqRLkdEardlrqela 181 (333)
T KOG1853|consen 158 EKEVLLESVQRLKDEARDLRQELA 181 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788888888888777776654
No 170
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=28.03 E-value=1.7e+02 Score=22.45 Aligned_cols=29 Identities=21% Similarity=0.327 Sum_probs=22.4
Q ss_pred hhHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy9706 5 HTLEEELKDLREENKKLKEESQNALQQLR 33 (39)
Q Consensus 5 ~~Lq~Ev~~LRe~N~RLqeESqsA~~qLr 33 (39)
+.|++||.+||..+.|.-...-+-..-|+
T Consensus 23 ~~lqaev~~lr~~~~~~e~~~~~l~~el~ 51 (531)
T PF15450_consen 23 AELQAEVACLRGHKERCERATLSLLRELL 51 (531)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57999999999999998776665544443
No 171
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=27.79 E-value=1.6e+02 Score=22.58 Aligned_cols=33 Identities=27% Similarity=0.380 Sum_probs=28.6
Q ss_pred hHhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q psy9706 3 RRHTLEEELKDLREENKKLKEESQNALQQLRRF 35 (39)
Q Consensus 3 ~r~~Lq~Ev~~LRe~N~RLqeESqsA~~qLrkf 35 (39)
.|.+||-|++.+.-|-.+|||.-.+..+|=-|+
T Consensus 412 eKetLqlelkK~k~nyv~LQEry~~eiQqKnks 444 (527)
T PF15066_consen 412 EKETLQLELKKIKANYVHLQERYMTEIQQKNKS 444 (527)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhH
Confidence 578899999999999999999988888776554
No 172
>KOG4643|consensus
Probab=27.47 E-value=1.3e+02 Score=25.23 Aligned_cols=29 Identities=28% Similarity=0.542 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q psy9706 7 LEEELKDLREENKKLKEESQNALQQLRRF 35 (39)
Q Consensus 7 Lq~Ev~~LRe~N~RLqeESqsA~~qLrkf 35 (39)
+.+.|..|++||+-|+||-+---+||.+.
T Consensus 262 ykdRveelkedN~vLleekeMLeeQLq~l 290 (1195)
T KOG4643|consen 262 YKDRVEELKEDNRVLLEEKEMLEEQLQKL 290 (1195)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 46778899999999999998888888764
No 173
>PRK13710 plasmid maintenance protein CcdA; Provisional
Probab=27.06 E-value=1.2e+02 Score=16.90 Aligned_cols=30 Identities=27% Similarity=0.595 Sum_probs=22.3
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhh
Q psy9706 6 TLEEELKDLREENKKLKEESQNALQQLRRFTE 37 (39)
Q Consensus 6 ~Lq~Ev~~LRe~N~RLqeESqsA~~qLrkfte 37 (39)
.|..|+++.+. ++.++|-+.|.+.+..|++
T Consensus 31 ~L~~~~~~~~~--~~W~~eN~eai~~~n~~ve 60 (72)
T PRK13710 31 AMQNEARRLRA--ERWKAENREGMAEVARFIE 60 (72)
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence 46677776553 5788888888888888875
No 174
>PRK11239 hypothetical protein; Provisional
Probab=26.81 E-value=1.6e+02 Score=19.93 Aligned_cols=23 Identities=22% Similarity=0.299 Sum_probs=13.9
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHH
Q psy9706 6 TLEEELKDLREENKKLKEESQNA 28 (39)
Q Consensus 6 ~Lq~Ev~~LRe~N~RLqeESqsA 28 (39)
.|+++|..|+++...|++.-+.-
T Consensus 187 ~Le~rv~~Le~eva~L~~~l~~l 209 (215)
T PRK11239 187 DLQARVEALEIEVAELKQRLDSL 209 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 36666666666666666554443
No 175
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=26.67 E-value=1.2e+02 Score=16.63 Aligned_cols=34 Identities=29% Similarity=0.413 Sum_probs=20.4
Q ss_pred hHhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHhh
Q psy9706 3 RRHTLEEELKDLREENKKLKEESQNALQQLRRFT 36 (39)
Q Consensus 3 ~r~~Lq~Ev~~LRe~N~RLqeESqsA~~qLrkft 36 (39)
+...|++.+..|.+.-..++.+.......+..-.
T Consensus 85 r~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~ 118 (120)
T PF02996_consen 85 RIKELEEQLEKLEKELAELQAQIEQLEQTLQQLY 118 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455666666666666666666655555554443
No 176
>PF10845 DUF2576: Protein of unknown function (DUF2576); InterPro: IPR022556 The function of this viral family of proteins is unknown. The entry contains Orf5 from Autographa californica nuclear polyhedrosis virus (AcMNPV).
Probab=26.61 E-value=1.1e+02 Score=16.63 Aligned_cols=25 Identities=32% Similarity=0.422 Sum_probs=20.2
Q ss_pred hHhhHHHHHHHHHHHhHHHHHHHHH
Q psy9706 3 RRHTLEEELKDLREENKKLKEESQN 27 (39)
Q Consensus 3 ~r~~Lq~Ev~~LRe~N~RLqeESqs 27 (39)
+|..|.-|+.+||.+-..|-+-|.+
T Consensus 12 dreqlrrelnsLR~~vhelctRs~t 36 (48)
T PF10845_consen 12 DREQLRRELNSLRRSVHELCTRSTT 36 (48)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 5778899999999998888777643
No 177
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=26.48 E-value=1.9e+02 Score=18.84 Aligned_cols=30 Identities=37% Similarity=0.598 Sum_probs=21.1
Q ss_pred HhhHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy9706 4 RHTLEEELKDLREENKKLKEESQNALQQLRR 34 (39)
Q Consensus 4 r~~Lq~Ev~~LRe~N~RLqeESqsA~~qLrk 34 (39)
...|+.|++.|..+-++|. +.++.+..||.
T Consensus 122 ~~eL~~eI~~L~~~i~~le-~~~~~~k~Lrn 151 (171)
T PF04799_consen 122 KNELEDEIKQLEKEIQRLE-EIQSKSKTLRN 151 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 4578899999999888874 44555555553
No 178
>COG1344 FlgL Flagellin and related hook-associated proteins [Cell motility and secretion]
Probab=26.36 E-value=84 Score=21.11 Aligned_cols=20 Identities=20% Similarity=0.454 Sum_probs=16.1
Q ss_pred hHhhHHHHHHHHHHHhHHHH
Q psy9706 3 RRHTLEEELKDLREENKKLK 22 (39)
Q Consensus 3 ~r~~Lq~Ev~~LRe~N~RLq 22 (39)
+|.+++.|+..|.++..+.-
T Consensus 106 dr~~iq~Ei~~l~~el~~ia 125 (360)
T COG1344 106 DRAAIQKEIEQLLDELDNIA 125 (360)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 68889999998888876654
No 179
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=26.20 E-value=1.6e+02 Score=17.76 Aligned_cols=31 Identities=32% Similarity=0.364 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHhhh
Q psy9706 7 LEEELKDLREENKKLKEESQNALQQLRRFTE 37 (39)
Q Consensus 7 Lq~Ev~~LRe~N~RLqeESqsA~~qLrkfte 37 (39)
..++|..+|-.|..|+-....+-.||++.-+
T Consensus 4 k~~~i~~~Rl~~~~lk~~l~k~~~ql~~ke~ 34 (177)
T PF13870_consen 4 KRNEISKLRLKNITLKHQLAKLEEQLRQKEE 34 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999999999999887643
No 180
>PF05769 DUF837: Protein of unknown function (DUF837); InterPro: IPR008555 This family consists of several eukaryotic proteins of unknown function. One of the family members (O02197 from SWISSPROT) is a circulating cathodic antigen (CCA) found in Schistosoma mansoni (Blood fluke) [].
Probab=26.15 E-value=1.3e+02 Score=19.13 Aligned_cols=22 Identities=41% Similarity=0.794 Sum_probs=15.0
Q ss_pred HHHHHHHHHhHHHH---HHHHHHHH
Q psy9706 9 EELKDLREENKKLK---EESQNALQ 30 (39)
Q Consensus 9 ~Ev~~LRe~N~RLq---eESqsA~~ 30 (39)
.+++.|.++|+.|. +|-|+|.+
T Consensus 70 ~qi~~Lq~EN~eL~~~leEhq~ale 94 (181)
T PF05769_consen 70 RQIRQLQQENRELRQSLEEHQSALE 94 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677888888876 56666654
No 181
>PF08227 DASH_Hsk3: DASH complex subunit Hsk3 like; InterPro: IPR013183 This is a family of fungal proteins of unknown function.
Probab=26.05 E-value=1.1e+02 Score=16.00 Aligned_cols=31 Identities=16% Similarity=0.124 Sum_probs=26.7
Q ss_pred hhHhhHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy9706 2 RRRHTLEEELKDLREENKKLKEESQNALQQL 32 (39)
Q Consensus 2 r~r~~Lq~Ev~~LRe~N~RLqeESqsA~~qL 32 (39)
|....|..+++.|..|-....+.-...+.|-
T Consensus 2 Rq~s~L~~qL~qL~aNL~~t~~~l~~~s~Q~ 32 (45)
T PF08227_consen 2 RQYSHLASQLAQLQANLADTENLLEMTSIQA 32 (45)
T ss_pred cHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 6678899999999999999998888888775
No 182
>PF08838 DUF1811: Protein of unknown function (DUF1811); InterPro: IPR014938 This entry consists uncharacterised bacterial proteins. Some of the proteins are annotated as being transcriptional regulators (see Q4MQL7 from SWISSPROT, Q65MA2 from SWISSPROT). The structure of one of the proteins has revealed a beta-barrel like structure with helix-turn-helix like motif. ; PDB: 2YXY_A 1SF9_A.
Probab=25.99 E-value=89 Score=19.05 Aligned_cols=15 Identities=27% Similarity=0.578 Sum_probs=8.5
Q ss_pred hhHHHHHHHHHHHhH
Q psy9706 5 HTLEEELKDLREENK 19 (39)
Q Consensus 5 ~~Lq~Ev~~LRe~N~ 19 (39)
..|+.||+.|++.-+
T Consensus 10 ~EL~~Ei~~L~ekar 24 (102)
T PF08838_consen 10 EELRQEIARLKEKAR 24 (102)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 456666666655543
No 183
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=25.46 E-value=1.7e+02 Score=20.58 Aligned_cols=29 Identities=38% Similarity=0.486 Sum_probs=23.7
Q ss_pred hhHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy9706 5 HTLEEELKDLREENKKLKEESQNALQQLR 33 (39)
Q Consensus 5 ~~Lq~Ev~~LRe~N~RLqeESqsA~~qLr 33 (39)
+.|..|+..-.++|.|.|||..+-..|+-
T Consensus 216 a~LseELa~k~Ee~~rQQEEIt~Llsqiv 244 (306)
T PF04849_consen 216 ASLSEELARKTEENRRQQEEITSLLSQIV 244 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56888899999999999999887776653
No 184
>PRK14147 heat shock protein GrpE; Provisional
Probab=25.38 E-value=1.8e+02 Score=18.30 Aligned_cols=22 Identities=14% Similarity=0.329 Sum_probs=12.6
Q ss_pred hHHHHHHHHHHHhHHHHHHHHH
Q psy9706 6 TLEEELKDLREENKKLKEESQN 27 (39)
Q Consensus 6 ~Lq~Ev~~LRe~N~RLqeESqs 27 (39)
.|++|+..|.....|++.+.++
T Consensus 29 ~l~~e~~elkd~~lR~~Ad~eN 50 (172)
T PRK14147 29 SLRSEIALVKADALRERADLEN 50 (172)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666655544
No 185
>PF05308 Mito_fiss_reg: Mitochondrial fission regulator; InterPro: IPR007972 This family consists of several uncharacterised eukaryotic proteins of unknown function.
Probab=25.19 E-value=81 Score=21.19 Aligned_cols=17 Identities=41% Similarity=0.614 Sum_probs=13.3
Q ss_pred hhHHHHHHHHHHHhHHH
Q psy9706 5 HTLEEELKDLREENKKL 21 (39)
Q Consensus 5 ~~Lq~Ev~~LRe~N~RL 21 (39)
.+||+|+..||.....+
T Consensus 125 sALEdELs~LRaQIA~I 141 (253)
T PF05308_consen 125 SALEDELSRLRAQIAKI 141 (253)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 57899999999876654
No 186
>PRK14157 heat shock protein GrpE; Provisional
Probab=25.15 E-value=2.2e+02 Score=19.16 Aligned_cols=25 Identities=16% Similarity=0.073 Sum_probs=17.9
Q ss_pred hhHHHHHHHHHHHhHHHHHHHHHHH
Q psy9706 5 HTLEEELKDLREENKKLKEESQNAL 29 (39)
Q Consensus 5 ~~Lq~Ev~~LRe~N~RLqeESqsA~ 29 (39)
..|++|+..+++.-.|++.|.++.-
T Consensus 87 ~~le~e~~e~kd~llR~~AEfeNyR 111 (227)
T PRK14157 87 GQAKKEAAEYLEALQRERAEFINYR 111 (227)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577778888777788877766544
No 187
>KOG3119|consensus
Probab=25.09 E-value=2.1e+02 Score=18.96 Aligned_cols=27 Identities=19% Similarity=0.407 Sum_probs=14.5
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhhh
Q psy9706 11 LKDLREENKKLKEESQNALQQLRRFTE 37 (39)
Q Consensus 11 v~~LRe~N~RLqeESqsA~~qLrkfte 37 (39)
|..|..+|..|..+...--.+|-+|..
T Consensus 224 ~~~leken~~lr~~v~~l~~el~~~~~ 250 (269)
T KOG3119|consen 224 VAELEKENEALRTQVEQLKKELATLRR 250 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666666555555555555443
No 188
>PRK14154 heat shock protein GrpE; Provisional
Probab=24.89 E-value=2.1e+02 Score=18.88 Aligned_cols=21 Identities=14% Similarity=0.378 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHhHHHHHHHHH
Q psy9706 7 LEEELKDLREENKKLKEESQN 27 (39)
Q Consensus 7 Lq~Ev~~LRe~N~RLqeESqs 27 (39)
|++++..|.+...|++.+.++
T Consensus 64 le~e~~elkd~~lRl~ADfeN 84 (208)
T PRK14154 64 MERKVDEYKTQYLRAQAEMDN 84 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555544443
No 189
>PRK14151 heat shock protein GrpE; Provisional
Probab=24.84 E-value=1.9e+02 Score=18.32 Aligned_cols=23 Identities=26% Similarity=0.423 Sum_probs=13.7
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHH
Q psy9706 6 TLEEELKDLREENKKLKEESQNA 28 (39)
Q Consensus 6 ~Lq~Ev~~LRe~N~RLqeESqsA 28 (39)
.|++|+..|++...|++.|..+.
T Consensus 31 ~le~e~~el~d~~lR~~Ae~eN~ 53 (176)
T PRK14151 31 ELEEQLAAAKDQSLRAAADLQNV 53 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666555543
No 190
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=24.66 E-value=1.8e+02 Score=17.91 Aligned_cols=28 Identities=32% Similarity=0.582 Sum_probs=20.4
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy9706 6 TLEEELKDLREENKKLKEESQNALQQLR 33 (39)
Q Consensus 6 ~Lq~Ev~~LRe~N~RLqeESqsA~~qLr 33 (39)
.|+.++..|...|....++.+.-.++++
T Consensus 55 eLk~~i~~lq~~~~~~~~~~e~~l~~~~ 82 (155)
T PF06810_consen 55 ELKKQIEELQAKNKTAKEEYEAKLAQMK 82 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5777888888888877777776666654
No 191
>PLN03188 kinesin-12 family protein; Provisional
Probab=24.55 E-value=2e+02 Score=24.42 Aligned_cols=20 Identities=40% Similarity=0.536 Sum_probs=14.5
Q ss_pred HhhHHHHHHHHHHHhHHHHH
Q psy9706 4 RHTLEEELKDLREENKKLKE 23 (39)
Q Consensus 4 r~~Lq~Ev~~LRe~N~RLqe 23 (39)
|+.=+.|.+-||.+|+.||-
T Consensus 1168 ~~ereker~~~~~enk~l~~ 1187 (1320)
T PLN03188 1168 KVEREKERRYLRDENKSLQA 1187 (1320)
T ss_pred HHHHHHHHHHHHHhhHHHHH
Confidence 44456677778888999984
No 192
>PF07061 Swi5: Swi5; InterPro: IPR010760 This entry represents Swi5 and is involved in meiotic DNA repair synthesis and meiotic joint molecule formation []. It is known to interact with Swi2, Rhp51 and Swi6 [].
Probab=24.44 E-value=1.5e+02 Score=16.85 Aligned_cols=27 Identities=26% Similarity=0.480 Sum_probs=17.8
Q ss_pred hhHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy9706 5 HTLEEELKDLREENKKLKEESQNALQQ 31 (39)
Q Consensus 5 ~~Lq~Ev~~LRe~N~RLqeESqsA~~q 31 (39)
..|++++..|.+....+..++......
T Consensus 3 ~~l~~~~~~L~~~~~~l~~~i~~~~~~ 29 (83)
T PF07061_consen 3 ESLEAEIQELKEQIEQLEKEISELEAE 29 (83)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 357777888887776666666554443
No 193
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=24.24 E-value=1.8e+02 Score=17.93 Aligned_cols=29 Identities=28% Similarity=0.487 Sum_probs=18.5
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy9706 6 TLEEELKDLREENKKLKEESQNALQQLRR 34 (39)
Q Consensus 6 ~Lq~Ev~~LRe~N~RLqeESqsA~~qLrk 34 (39)
.++..|..|+.+...|-+.......+|..
T Consensus 26 ~~~~~I~~L~~e~~~ld~~i~~~~~~L~~ 54 (188)
T PF10018_consen 26 ENQARIQQLRAEIEELDEQIRDILKQLKE 54 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777777776666666665543
No 194
>PRK14156 heat shock protein GrpE; Provisional
Probab=23.99 E-value=2.1e+02 Score=18.38 Aligned_cols=23 Identities=17% Similarity=0.225 Sum_probs=14.3
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHH
Q psy9706 6 TLEEELKDLREENKKLKEESQNA 28 (39)
Q Consensus 6 ~Lq~Ev~~LRe~N~RLqeESqsA 28 (39)
.|++++..|++.-.|++.+.++.
T Consensus 38 ~l~~e~~elkd~~lR~~AEfeN~ 60 (177)
T PRK14156 38 LANERADEFENKYLRAHAEMQNI 60 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666665543
No 195
>COG4951 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.81 E-value=66 Score=23.48 Aligned_cols=18 Identities=39% Similarity=0.530 Sum_probs=15.3
Q ss_pred hhHHHHHHHHHHHhHHHH
Q psy9706 5 HTLEEELKDLREENKKLK 22 (39)
Q Consensus 5 ~~Lq~Ev~~LRe~N~RLq 22 (39)
..++.|++-||++|.|+-
T Consensus 4 ~~~~~e~aa~r~e~~~~~ 21 (361)
T COG4951 4 KSDSDELAALRAENARLV 21 (361)
T ss_pred chhhHHHHHHHHHhhhhe
Confidence 368899999999999863
No 196
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.62 E-value=1.7e+02 Score=20.00 Aligned_cols=26 Identities=15% Similarity=0.392 Sum_probs=15.8
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy9706 6 TLEEELKDLREENKKLKEESQNALQQL 32 (39)
Q Consensus 6 ~Lq~Ev~~LRe~N~RLqeESqsA~~qL 32 (39)
.|+.+|..|+. +++||-..+.-..++
T Consensus 67 ~l~g~i~~L~~-~~~~q~q~~~~~~~q 92 (262)
T COG1729 67 QLQGKIEELRG-IQELQYQNNQNVERQ 92 (262)
T ss_pred HHHhhHHHHHh-HHHHHHHHHHHHHHH
Confidence 46677777776 666665554444443
No 197
>PRK14163 heat shock protein GrpE; Provisional
Probab=23.47 E-value=2.3e+02 Score=18.82 Aligned_cols=23 Identities=22% Similarity=0.302 Sum_probs=14.3
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHH
Q psy9706 6 TLEEELKDLREENKKLKEESQNA 28 (39)
Q Consensus 6 ~Lq~Ev~~LRe~N~RLqeESqsA 28 (39)
.|++++..|++...|++.|.++.
T Consensus 51 ~l~~e~~el~d~~lR~~AEfeN~ 73 (214)
T PRK14163 51 QVRTALGERTADLQRLQAEYQNY 73 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666666554
No 198
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=23.32 E-value=1.4e+02 Score=16.36 Aligned_cols=33 Identities=30% Similarity=0.479 Sum_probs=22.1
Q ss_pred HhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHhh
Q psy9706 4 RHTLEEELKDLREENKKLKEESQNALQQLRRFT 36 (39)
Q Consensus 4 r~~Lq~Ev~~LRe~N~RLqeESqsA~~qLrkft 36 (39)
...|-+|++.|.+.-.-|.++...+-++|..+.
T Consensus 69 ~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~~l 101 (108)
T PF02403_consen 69 AEELKAEVKELKEEIKELEEQLKELEEELNELL 101 (108)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777777777777777776666665543
No 199
>KOG4657|consensus
Probab=23.12 E-value=1e+02 Score=21.47 Aligned_cols=21 Identities=38% Similarity=0.460 Sum_probs=16.6
Q ss_pred hHHHHHHHHHHHhHHHHHHHH
Q psy9706 6 TLEEELKDLREENKKLKEESQ 26 (39)
Q Consensus 6 ~Lq~Ev~~LRe~N~RLqeESq 26 (39)
.+++|+..|+-+||-|.+|--
T Consensus 97 ~~q~elEvl~~n~Q~lkeE~d 117 (246)
T KOG4657|consen 97 ATQSELEVLRRNLQLLKEEKD 117 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 467788888889999988754
No 200
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=22.99 E-value=1.6e+02 Score=16.88 Aligned_cols=30 Identities=30% Similarity=0.485 Sum_probs=20.3
Q ss_pred hhHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy9706 5 HTLEEELKDLREENKKLKEESQNALQQLRR 34 (39)
Q Consensus 5 ~~Lq~Ev~~LRe~N~RLqeESqsA~~qLrk 34 (39)
..++.++.+++.+|-++...++.-+..+..
T Consensus 13 ~~l~~~L~~v~~~~l~l~~~n~el~~el~~ 42 (106)
T PF05837_consen 13 RSLQEKLSDVEKKRLRLKRRNQELAQELLE 42 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677777777777777777666666543
No 201
>KOG1962|consensus
Probab=22.94 E-value=1.8e+02 Score=19.62 Aligned_cols=27 Identities=33% Similarity=0.471 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy9706 7 LEEELKDLREENKKLKEESQNALQQLR 33 (39)
Q Consensus 7 Lq~Ev~~LRe~N~RLqeESqsA~~qLr 33 (39)
|++|...+-++-..|++|+++-...|.
T Consensus 149 ~~~~~~~~~~~~~kL~~el~~~~~~Le 175 (216)
T KOG1962|consen 149 LEEENDKLKADLEKLETELEKKQKKLE 175 (216)
T ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHH
Confidence 455666666666666666665555444
No 202
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=22.91 E-value=2.1e+02 Score=18.16 Aligned_cols=26 Identities=35% Similarity=0.497 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy9706 7 LEEELKDLREENKKLKEESQNALQQL 32 (39)
Q Consensus 7 Lq~Ev~~LRe~N~RLqeESqsA~~qL 32 (39)
|-.++...+..|..|.++.+....++
T Consensus 86 LReQLEq~~~~N~~L~~dl~klt~~~ 111 (182)
T PF15035_consen 86 LREQLEQARKANEALQEDLQKLTQDW 111 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455555555555544443
No 203
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=22.85 E-value=1.5e+02 Score=16.47 Aligned_cols=31 Identities=29% Similarity=0.440 Sum_probs=18.5
Q ss_pred hHhhHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy9706 3 RRHTLEEELKDLREENKKLKEESQNALQQLR 33 (39)
Q Consensus 3 ~r~~Lq~Ev~~LRe~N~RLqeESqsA~~qLr 33 (39)
.+....+|+..|..+...|+.+....-..|.
T Consensus 75 ~~~~k~~ei~~l~~~l~~l~~~~~k~e~~l~ 105 (126)
T PF13863_consen 75 KKEEKEAEIKKLKAELEELKSEISKLEEKLE 105 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666777777777777666554444443
No 204
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=22.69 E-value=1.6e+02 Score=16.61 Aligned_cols=20 Identities=35% Similarity=0.607 Sum_probs=16.3
Q ss_pred ChhHhhHHHHHHHHHHHhHH
Q psy9706 1 MRRRHTLEEELKDLREENKK 20 (39)
Q Consensus 1 ~r~r~~Lq~Ev~~LRe~N~R 20 (39)
||++.+|..|++.|+..+.+
T Consensus 51 mr~~d~l~~e~k~L~~~~~K 70 (96)
T PF08647_consen 51 MRSKDALDNEMKKLNTQLSK 70 (96)
T ss_pred HHhHHHHHHHHHHHHHHHHH
Confidence 57888999999999876655
No 205
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=22.58 E-value=2.3e+02 Score=20.87 Aligned_cols=29 Identities=28% Similarity=0.583 Sum_probs=22.7
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy9706 6 TLEEELKDLREENKKLKEESQNALQQLRR 34 (39)
Q Consensus 6 ~Lq~Ev~~LRe~N~RLqeESqsA~~qLrk 34 (39)
.|+.++..|..++.+|+.+-...-.+|.+
T Consensus 507 ~L~~~~~~Le~e~~~L~~~~~~Le~~l~~ 535 (722)
T PF05557_consen 507 ELQKEIEELERENERLRQELEELESELEK 535 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47888888888888888887777666654
No 206
>KOG2297|consensus
Probab=22.56 E-value=52 Score=24.42 Aligned_cols=14 Identities=36% Similarity=0.852 Sum_probs=11.0
Q ss_pred HHHHHHHHHhhhcC
Q psy9706 26 QNALQQLRRFTEWT 39 (39)
Q Consensus 26 qsA~~qLrkftew~ 39 (39)
+.-..|+++|.+|+
T Consensus 391 ~~FleqmkkFVeWL 404 (412)
T KOG2297|consen 391 SVFLEQMKKFVEWL 404 (412)
T ss_pred HHHHHHHHHHHHHH
Confidence 45578999999995
No 207
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=22.27 E-value=2.9e+02 Score=20.38 Aligned_cols=32 Identities=28% Similarity=0.448 Sum_probs=19.8
Q ss_pred hHhhHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy9706 3 RRHTLEEELKDLREENKKLKEESQNALQQLRR 34 (39)
Q Consensus 3 ~r~~Lq~Ev~~LRe~N~RLqeESqsA~~qLrk 34 (39)
.+..|+.++++|..++.++..+.-....-|.+
T Consensus 60 ~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~ 91 (420)
T COG4942 60 QRAKLEKQLKSLETEIASLEAQLIETADDLKK 91 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 35567777777777777776655444444433
No 208
>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function.; PDB: 3E98_B.
Probab=22.05 E-value=2.1e+02 Score=17.80 Aligned_cols=34 Identities=21% Similarity=0.321 Sum_probs=22.6
Q ss_pred hhHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhc
Q psy9706 5 HTLEEELKDLREENKKLKEESQNALQQLRRFTEW 38 (39)
Q Consensus 5 ~~Lq~Ev~~LRe~N~RLqeESqsA~~qLrkftew 38 (39)
..|.++++.|++.+..|-+-...--+-..+|.+|
T Consensus 50 ~~LR~~~~~L~~~l~~Li~~Ar~Ne~~~~~~~~l 83 (225)
T PF04340_consen 50 ERLRERNRQLEEQLEELIENARENEAIFQRLHRL 83 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888888888877776655555555555443
No 209
>PRK14160 heat shock protein GrpE; Provisional
Probab=21.96 E-value=2.5e+02 Score=18.57 Aligned_cols=20 Identities=50% Similarity=0.720 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHhHHHHHHHH
Q psy9706 7 LEEELKDLREENKKLKEESQ 26 (39)
Q Consensus 7 Lq~Ev~~LRe~N~RLqeESq 26 (39)
|+.++..|.+.+..|+++..
T Consensus 59 l~~e~~~l~~~l~~l~~e~~ 78 (211)
T PRK14160 59 LKDENNKLKEENKKLENELE 78 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444443333
No 210
>PF11594 Med28: Mediator complex subunit 28; InterPro: IPR021640 Mediator is a large complex of up to 33 proteins that is conserved from plants to fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function []. Subunit Med28 of the Mediator may function as a scaffolding protein within Mediator by maintaining the stability of a submodule within the head module, and components of this submodule act together in a gene-regulatory programme to suppress smooth muscle cell differentiation. Thus, mammalian Mediator subunit Med28 functions as a repressor of smooth muscle-cell differentiation, which could have implications for disorders associated with abnormalities in smooth muscle cell growth and differentiation, including atherosclerosis, asthma, hypertension, and smooth muscle tumours [].
Probab=21.75 E-value=2e+02 Score=17.53 Aligned_cols=22 Identities=45% Similarity=0.522 Sum_probs=11.7
Q ss_pred HHHHhHHHHHHHHHHHHHHHHh
Q psy9706 14 LREENKKLKEESQNALQQLRRF 35 (39)
Q Consensus 14 LRe~N~RLqeESqsA~~qLrkf 35 (39)
|.+++..|++|-+..-+=++|.
T Consensus 40 lkEEi~eLK~ElqRKe~Ll~Kh 61 (106)
T PF11594_consen 40 LKEEINELKEELQRKEQLLQKH 61 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555556655555544443
No 211
>COG5230 Uncharacterized conserved protein [Function unknown]
Probab=21.57 E-value=1.1e+02 Score=20.64 Aligned_cols=22 Identities=36% Similarity=0.444 Sum_probs=17.6
Q ss_pred hHHHHHHHH-HHHhHHHHHHHHH
Q psy9706 6 TLEEELKDL-REENKKLKEESQN 27 (39)
Q Consensus 6 ~Lq~Ev~~L-Re~N~RLqeESqs 27 (39)
..+.|+.+| |++.-=|||.||.
T Consensus 32 ~i~~E~~~ldr~~~eilqeasq~ 54 (194)
T COG5230 32 AIEGENEHLDRRMEEILQEASQA 54 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc
Confidence 457899999 8888888988764
No 212
>COG5570 Uncharacterized small protein [Function unknown]
Probab=21.57 E-value=93 Score=17.49 Aligned_cols=16 Identities=31% Similarity=0.655 Sum_probs=8.7
Q ss_pred HHHHHHHhHHHHHHHH
Q psy9706 11 LKDLREENKKLKEESQ 26 (39)
Q Consensus 11 v~~LRe~N~RLqeESq 26 (39)
+++|...--||+||..
T Consensus 35 i~eLKRrKL~lKeeIE 50 (57)
T COG5570 35 IRELKRRKLRLKEEIE 50 (57)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4455555556665543
No 213
>PRK14153 heat shock protein GrpE; Provisional
Probab=21.00 E-value=2.5e+02 Score=18.28 Aligned_cols=23 Identities=30% Similarity=0.377 Sum_probs=15.4
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHH
Q psy9706 6 TLEEELKDLREENKKLKEESQNA 28 (39)
Q Consensus 6 ~Lq~Ev~~LRe~N~RLqeESqsA 28 (39)
.|++++..|+....|++.|.++.
T Consensus 44 ~l~~e~~elkd~~lR~~AEfeN~ 66 (194)
T PRK14153 44 KCREEIESLKEQLFRLAAEFDNF 66 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677777777777777666544
No 214
>PRK14139 heat shock protein GrpE; Provisional
Probab=20.71 E-value=2.5e+02 Score=18.12 Aligned_cols=23 Identities=22% Similarity=0.338 Sum_probs=13.8
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHH
Q psy9706 6 TLEEELKDLREENKKLKEESQNA 28 (39)
Q Consensus 6 ~Lq~Ev~~LRe~N~RLqeESqsA 28 (39)
.|++|+..|++...|++.|.++.
T Consensus 43 ~le~e~~elkd~~lR~~AefeN~ 65 (185)
T PRK14139 43 EAEAKAAELQDSFLRAKAETENV 65 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666666666666665544
No 215
>KOG0288|consensus
Probab=20.70 E-value=2.7e+02 Score=21.09 Aligned_cols=23 Identities=43% Similarity=0.514 Sum_probs=18.0
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHH
Q psy9706 6 TLEEELKDLREENKKLKEESQNA 28 (39)
Q Consensus 6 ~Lq~Ev~~LRe~N~RLqeESqsA 28 (39)
..+.|+++|.++|.-|-||--++
T Consensus 52 ~~E~~l~~Lq~e~~~l~e~~v~~ 74 (459)
T KOG0288|consen 52 EKELELNRLQEENTQLNEERVRE 74 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788999999998888876543
No 216
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=20.36 E-value=2.7e+02 Score=18.41 Aligned_cols=29 Identities=28% Similarity=0.329 Sum_probs=18.1
Q ss_pred hHhhHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy9706 3 RRHTLEEELKDLREENKKLKEESQNALQQ 31 (39)
Q Consensus 3 ~r~~Lq~Ev~~LRe~N~RLqeESqsA~~q 31 (39)
+.-.|++.|++++.+..+.++..+..-..
T Consensus 61 DIn~lE~iIkqa~~er~~~~~~i~r~~ee 89 (230)
T PF10146_consen 61 DINTLENIIKQAESERNKRQEKIQRLYEE 89 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777777777777766665544433
No 217
>PF11172 DUF2959: Protein of unknown function (DUF2959); InterPro: IPR021342 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=20.28 E-value=2.8e+02 Score=18.60 Aligned_cols=33 Identities=15% Similarity=0.342 Sum_probs=29.0
Q ss_pred hhHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhh
Q psy9706 5 HTLEEELKDLREENKKLKEESQNALQQLRRFTE 37 (39)
Q Consensus 5 ~~Lq~Ev~~LRe~N~RLqeESqsA~~qLrkfte 37 (39)
.+|+.|+..+..+..+|-.+-..+.++--+|..
T Consensus 166 ~sL~~e~~~~~~di~~Li~~m~~sI~ead~FI~ 198 (201)
T PF11172_consen 166 ASLQGEFSSIESDISQLIKEMERSIAEADAFIA 198 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478899999999999999999999998888864
No 218
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=20.24 E-value=1.7e+02 Score=15.99 Aligned_cols=29 Identities=14% Similarity=0.451 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q psy9706 7 LEEELKDLREENKKLKEESQNALQQLRRF 35 (39)
Q Consensus 7 Lq~Ev~~LRe~N~RLqeESqsA~~qLrkf 35 (39)
+...|..+|.+|+.+.++-+.--+-.++.
T Consensus 12 ~~~~i~tvk~en~~i~~~ve~i~envk~l 40 (55)
T PF05377_consen 12 IESSINTVKKENEEISESVEKIEENVKDL 40 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567777888887777766555544443
No 219
>KOG4797|consensus
Probab=20.23 E-value=1.5e+02 Score=18.80 Aligned_cols=31 Identities=29% Similarity=0.547 Sum_probs=17.7
Q ss_pred hHHHHHHHHHHHhHHHHHHHH-----HHHHHHHHhh
Q psy9706 6 TLEEELKDLREENKKLKEESQ-----NALQQLRRFT 36 (39)
Q Consensus 6 ~Lq~Ev~~LRe~N~RLqeESq-----sA~~qLrkft 36 (39)
.|...|+.|-+.|.+|.+|.. ..-+||.+|.
T Consensus 71 ~Lk~qI~eL~er~~~Le~EN~lLk~~~spe~L~ql~ 106 (123)
T KOG4797|consen 71 VLKEQIRELEERNSALERENSLLKTLASPEQLAQLP 106 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHH
Confidence 455666666666776666532 2345665553
No 220
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=20.22 E-value=2.4e+02 Score=21.24 Aligned_cols=24 Identities=33% Similarity=0.475 Sum_probs=13.0
Q ss_pred hHhhHHHHHHHHHHHhHHHHHHHH
Q psy9706 3 RRHTLEEELKDLREENKKLKEESQ 26 (39)
Q Consensus 3 ~r~~Lq~Ev~~LRe~N~RLqeESq 26 (39)
+|.-|.+|+++|++.+.....|++
T Consensus 420 ~R~pL~~e~r~lk~~~~~~~~e~~ 443 (594)
T PF05667_consen 420 HRAPLIEEYRRLKEKASNRESESK 443 (594)
T ss_pred HHhHHHHHHHHHHHHHhhcchHHH
Confidence 456666666666655443333333
No 221
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=20.15 E-value=2.6e+02 Score=21.40 Aligned_cols=24 Identities=42% Similarity=0.675 Sum_probs=13.9
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHH
Q psy9706 6 TLEEELKDLREENKKLKEESQNAL 29 (39)
Q Consensus 6 ~Lq~Ev~~LRe~N~RLqeESqsA~ 29 (39)
.|..|+..||++|.-||..-+..+
T Consensus 457 ~lk~eL~qlr~ene~Lq~Kl~~L~ 480 (697)
T PF09726_consen 457 SLKSELSQLRQENEQLQNKLQNLV 480 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666665444443
No 222
>PF06657 Cep57_MT_bd: Centrosome microtubule-binding domain of Cep57; InterPro: IPR010597 This entry is thought to represent a centrosomal protein of 57 kDa (Cep57-related protein). It is required for spindle microtubule attachment to both kinetochores and centrosomes and functions to tether minus-ends of spindle microtubules to centrosomes. It may act by forming ring-like structures around microtubules, or by serving as a cross-linker or scaffold at the attachment site [].
Probab=20.03 E-value=1.8e+02 Score=16.21 Aligned_cols=19 Identities=26% Similarity=0.644 Sum_probs=14.4
Q ss_pred hHHHHHHHHHHHhHHHHHH
Q psy9706 6 TLEEELKDLREENKKLKEE 24 (39)
Q Consensus 6 ~Lq~Ev~~LRe~N~RLqeE 24 (39)
.||.|+.+|.-+-+.|+++
T Consensus 21 ~LqDE~~hm~~e~~~L~~~ 39 (79)
T PF06657_consen 21 ALQDEFGHMKMEHQELQDE 39 (79)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5788888888877777654
Done!