Query psy9706
Match_columns 39
No_of_seqs 34 out of 36
Neff 2.7
Searched_HMMs 29240
Date Fri Aug 16 17:33:38 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9706.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9706hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3w03_C DNA repair protein XRCC 95.8 0.012 4.3E-07 37.3 4.3 30 5-34 155-184 (184)
2 3s9g_A Protein hexim1; cyclin 95.2 0.021 7.3E-07 34.4 3.5 26 5-30 68-93 (104)
3 1ik9_A DNA repair protein XRCC 92.9 0.25 8.5E-06 31.2 5.1 33 5-37 135-167 (213)
4 2wt7_A Proto-oncogene protein 91.5 0.42 1.4E-05 24.8 4.3 31 5-35 26-56 (63)
5 3i00_A HIP-I, huntingtin-inter 90.8 0.48 1.7E-05 27.9 4.5 29 6-34 19-47 (120)
6 2w6b_A RHO guanine nucleotide 90.4 0.79 2.7E-05 25.0 4.8 29 6-34 14-45 (56)
7 3q4f_C DNA repair protein XRCC 89.8 0.28 9.6E-06 31.7 3.1 21 5-25 164-184 (186)
8 1t6f_A Geminin; coiled-coil, c 89.3 0.24 8.3E-06 25.2 2.0 16 8-23 20-35 (37)
9 1dh3_A Transcription factor CR 88.8 0.6 2.1E-05 24.0 3.4 24 5-28 25-48 (55)
10 1gu4_A CAAT/enhancer binding p 88.1 1.7 5.9E-05 23.9 5.2 35 5-39 39-73 (78)
11 2aze_B Transcription factor E2 88.1 1.7 5.7E-05 24.9 5.3 34 4-37 8-41 (106)
12 1deb_A APC protein, adenomatou 87.2 1.8 6.2E-05 23.4 4.8 30 6-35 7-36 (54)
13 3l4f_A RHO guanine nucleotide 87.0 1.7 5.8E-05 23.8 4.7 29 6-34 11-42 (61)
14 1hjb_A Ccaat/enhancer binding 86.7 1.5 5.1E-05 24.7 4.5 32 6-37 40-71 (87)
15 2dgc_A Protein (GCN4); basic d 85.0 1.2 4.1E-05 23.4 3.3 27 5-31 33-59 (63)
16 2yy0_A C-MYC-binding protein; 84.8 1.8 6E-05 22.3 3.9 29 5-33 22-50 (53)
17 1am9_A Srebp-1A, protein (ster 83.5 1.6 5.5E-05 23.5 3.5 24 5-28 53-76 (82)
18 1t2k_D Cyclic-AMP-dependent tr 82.5 3.4 0.00012 21.0 4.5 28 5-32 25-52 (61)
19 3m91_A Proteasome-associated A 82.1 3.8 0.00013 21.2 5.5 31 5-35 12-42 (51)
20 1jnm_A Proto-oncogene C-JUN; B 81.8 3 0.0001 21.3 4.0 28 5-32 25-52 (62)
21 3ra3_B P2F; coiled coil domain 81.4 0.92 3.1E-05 21.8 1.8 17 11-27 2-18 (28)
22 2jee_A YIIU; FTSZ, septum, coi 81.1 5.4 0.00018 22.5 5.2 20 14-33 53-72 (81)
23 1wlq_A Geminin; coiled-coil; 2 80.1 1.4 5E-05 25.2 2.6 20 6-25 49-68 (83)
24 3u06_A Protein claret segregat 79.7 4.4 0.00015 27.3 5.3 32 4-35 5-36 (412)
25 2zxx_A Geminin; coiled-coil, c 77.9 2.6 9E-05 23.7 3.2 20 6-25 45-64 (79)
26 2jee_A YIIU; FTSZ, septum, coi 77.1 4.5 0.00016 22.8 4.1 25 6-30 24-48 (81)
27 2jn6_A Protein CGL2762, transp 76.6 0.64 2.2E-05 24.1 0.4 20 6-25 63-82 (97)
28 4dzo_A Mitotic spindle assembl 76.6 6.5 0.00022 22.9 4.8 30 5-34 7-36 (123)
29 1nkp_B MAX protein, MYC proto- 76.2 5.8 0.0002 20.9 4.2 29 6-34 51-79 (83)
30 3c3f_A Alpha/beta peptide with 74.3 2.5 8.4E-05 21.1 2.2 19 6-24 5-23 (34)
31 3c3g_A Alpha/beta peptide with 74.0 2.5 8.7E-05 20.9 2.2 19 6-24 4-22 (33)
32 1uii_A Geminin; human, DNA rep 73.3 3.2 0.00011 23.7 2.8 16 7-22 58-73 (83)
33 3m48_A General control protein 73.1 6.3 0.00021 19.4 3.5 21 6-26 4-24 (33)
34 2bni_A General control protein 72.3 2.9 0.0001 20.8 2.2 19 6-24 5-23 (34)
35 1ci6_A Transcription factor AT 72.0 8.4 0.00029 19.9 4.5 24 5-28 26-49 (63)
36 2oxj_A Hybrid alpha/beta pepti 71.4 3.2 0.00011 20.6 2.2 20 6-25 5-24 (34)
37 3oja_A Leucine-rich immune mol 71.4 10 0.00035 24.4 5.1 28 6-33 439-466 (487)
38 2wt7_B Transcription factor MA 71.3 9.8 0.00033 21.6 4.5 23 5-27 58-80 (90)
39 1go4_E MAD1 (mitotic arrest de 71.0 8.6 0.00029 22.3 4.3 29 6-34 16-44 (100)
40 2xdj_A Uncharacterized protein 70.8 11 0.00038 20.8 4.8 28 6-33 31-58 (83)
41 2wvr_A Geminin; DNA replicatio 70.4 9.3 0.00032 25.0 4.8 18 6-23 126-143 (209)
42 1kd8_A GABH AIV, GCN4 acid bas 69.8 4 0.00014 20.5 2.4 19 6-24 5-23 (36)
43 3viq_B Mating-type switching p 69.3 4.4 0.00015 23.0 2.8 29 4-32 3-31 (85)
44 2wuj_A Septum site-determining 69.1 5 0.00017 20.5 2.7 23 7-29 32-54 (57)
45 1jcd_A Major outer membrane li 68.6 10 0.00036 19.6 4.4 27 6-32 22-48 (52)
46 1got_G GT-gamma; complex (GTP- 67.5 3.3 0.00011 22.6 1.9 33 5-37 20-52 (73)
47 3u1c_A Tropomyosin alpha-1 cha 67.0 14 0.00048 20.5 5.5 32 4-35 39-70 (101)
48 3he5_A Synzip1; heterodimeric 66.6 6 0.0002 20.9 2.8 20 5-24 6-25 (49)
49 2hy6_A General control protein 65.3 5 0.00017 19.9 2.2 19 6-24 5-23 (34)
50 1uo4_A General control protein 64.7 5.2 0.00018 19.8 2.2 20 6-25 5-24 (34)
51 3m9b_A Proteasome-associated A 64.6 9.8 0.00034 25.1 4.1 31 5-35 57-87 (251)
52 1kd8_B GABH BLL, GCN4 acid bas 64.6 5.2 0.00018 20.0 2.2 19 6-24 5-23 (36)
53 3he5_B Synzip2; heterodimeric 64.5 7.7 0.00026 20.6 3.0 24 3-26 25-48 (52)
54 1a93_B MAX protein, coiled coi 62.9 12 0.00042 18.3 3.9 22 5-26 10-31 (34)
55 2wg5_A General control protein 62.4 11 0.00037 21.1 3.5 21 6-26 11-31 (109)
56 3jsv_C NF-kappa-B essential mo 62.2 2.6 8.9E-05 24.5 0.9 25 3-27 69-93 (94)
57 2j5u_A MREC protein; bacterial 62.2 3.5 0.00012 25.9 1.5 21 6-26 23-43 (255)
58 2wq1_A General control protein 61.5 6.6 0.00022 19.4 2.2 20 6-25 4-23 (33)
59 1gd2_E Transcription factor PA 60.5 15 0.00053 19.7 3.8 21 6-26 33-53 (70)
60 1nlw_A MAD protein, MAX dimeri 59.4 19 0.00064 19.3 4.5 27 6-32 51-77 (80)
61 1nkp_A C-MYC, MYC proto-oncoge 58.8 18 0.00061 19.6 3.9 19 6-24 63-81 (88)
62 2akf_A Coronin-1A; coiled coil 57.1 12 0.00042 18.3 2.7 19 6-24 3-21 (32)
63 1hlo_A Protein (transcription 57.1 11 0.00038 19.7 2.8 18 6-23 61-78 (80)
64 3s9g_A Protein hexim1; cyclin 56.6 24 0.00081 21.0 4.4 30 5-34 40-69 (104)
65 4b4t_M 26S protease regulatory 56.4 12 0.00041 25.3 3.5 30 5-34 35-64 (434)
66 1joc_A EEA1, early endosomal a 56.4 25 0.00086 19.9 4.9 23 6-28 15-37 (125)
67 4ath_A MITF, microphthalmia-as 55.7 6.8 0.00023 22.1 1.9 15 11-25 41-55 (83)
68 2ve7_A Kinetochore protein HEC 55.3 25 0.00085 22.7 4.7 15 10-24 186-200 (315)
69 3e98_A GAF domain of unknown f 54.8 23 0.00079 22.1 4.4 20 8-27 71-90 (252)
70 3viq_A SWI5-dependent recombin 54.5 30 0.001 20.2 4.7 21 2-22 7-27 (122)
71 2r2v_A GCN4 leucine zipper; co 51.8 12 0.0004 18.5 2.2 20 6-25 5-24 (34)
72 2oa5_A Hypothetical protein BQ 51.3 12 0.00041 22.3 2.6 22 5-26 11-32 (110)
73 4etp_A Kinesin-like protein KA 51.0 37 0.0013 22.5 5.1 29 5-33 6-34 (403)
74 3kf9_B MLCK2, myosin light cha 50.5 9.7 0.00033 17.3 1.6 11 26-36 11-21 (22)
75 3cve_A Homer protein homolog 1 50.1 30 0.001 18.9 4.3 31 7-37 19-49 (72)
76 3u06_A Protein claret segregat 49.4 34 0.0012 23.0 4.8 29 6-34 14-42 (412)
77 3q0x_A Centriole protein; cent 49.2 30 0.001 22.2 4.4 29 6-34 175-203 (228)
78 1tu3_F RAB GTPase binding effe 47.6 18 0.00063 20.6 2.9 35 2-36 5-39 (79)
79 3mq7_A Bone marrow stromal ant 47.1 46 0.0016 20.2 5.2 25 8-32 70-94 (121)
80 3sjd_D Golgi to ER traffic pro 46.2 31 0.0011 17.9 3.8 29 9-38 17-46 (46)
81 1ic2_A Tropomyosin alpha chain 46.1 32 0.0011 18.1 5.4 33 4-36 36-68 (81)
82 3w03_C DNA repair protein XRCC 45.9 50 0.0017 20.6 4.9 27 7-33 150-176 (184)
83 3bs5_B Connector enhancer of k 44.2 13 0.00044 18.9 1.7 22 3-24 58-79 (80)
84 2l48_A N-acetylmuramoyl-L-alan 44.1 6.4 0.00022 22.5 0.5 11 29-39 65-75 (85)
85 3v1a_A Computational design, M 42.5 32 0.0011 17.7 3.1 19 9-27 27-45 (48)
86 3cvf_A Homer-3, homer protein 42.1 44 0.0015 18.5 4.8 31 7-37 25-55 (79)
87 3mud_A DNA repair protein XRCC 41.5 60 0.0021 20.3 4.8 28 5-32 138-165 (175)
88 3h43_A Proteasome-activating n 39.6 21 0.00072 19.3 2.2 15 9-23 2-16 (85)
89 3plt_A Sphingolipid long chain 39.3 77 0.0026 20.6 5.5 35 2-36 111-158 (234)
90 3u59_A Tropomyosin beta chain; 39.1 47 0.0016 18.0 5.5 33 4-36 39-71 (101)
91 4etp_A Kinesin-like protein KA 34.3 83 0.0028 20.9 4.8 27 6-32 14-40 (403)
92 3oja_A Leucine-rich immune mol 33.7 93 0.0032 19.9 5.1 30 5-34 420-449 (487)
93 1z23_A CRK-associated substrat 33.3 49 0.0017 20.5 3.4 22 15-36 13-34 (163)
94 2oto_A M protein; helical coil 33.2 70 0.0024 18.3 4.3 28 5-32 53-80 (155)
95 1yzm_A FYVE-finger-containing 32.9 41 0.0014 17.4 2.6 18 9-26 28-45 (51)
96 1a92_A Delta antigen; leucine 31.0 62 0.0021 17.0 3.4 21 4-24 16-36 (50)
97 3m9b_A Proteasome-associated A 30.9 53 0.0018 21.6 3.4 20 7-26 73-92 (251)
98 2w83_C C-JUN-amino-terminal ki 30.4 55 0.0019 18.4 3.0 22 3-24 45-66 (77)
99 1z0k_B FYVE-finger-containing 30.3 45 0.0015 18.2 2.6 18 9-26 46-63 (69)
100 3o0z_A RHO-associated protein 29.9 1E+02 0.0035 19.1 4.7 27 4-30 99-125 (168)
101 1io1_A Phase 1 flagellin; beta 28.8 46 0.0016 22.1 2.8 21 2-22 54-74 (398)
102 2kk9_A M protein, serotype 5; 27.6 62 0.0021 17.1 2.7 16 4-19 14-29 (56)
103 2nrj_A HBL B protein; enteroto 27.5 1.3E+02 0.0044 19.5 5.1 34 3-36 117-150 (346)
104 1gmj_A ATPase inhibitor; coile 27.3 89 0.003 17.6 5.1 32 4-35 46-77 (84)
105 1wkc_A HB8 TT1367 protein; str 26.9 99 0.0034 18.1 3.9 34 4-38 3-36 (184)
106 2ean_A Connector enhancer of k 26.8 44 0.0015 17.0 2.1 19 3-21 62-80 (83)
107 3v47_C Flagellin; innate immun 26.7 51 0.0017 22.9 2.8 21 2-22 66-86 (425)
108 1z0j_B FYVE-finger-containing 26.5 59 0.002 17.3 2.6 18 9-26 35-52 (59)
109 3trt_A Vimentin; cytoskeleton, 26.4 71 0.0024 16.1 3.5 21 7-27 54-74 (77)
110 2dfs_A Myosin-5A; myosin-V, in 26.0 1.4E+02 0.0046 22.5 5.1 7 10-16 992-998 (1080)
111 3swk_A Vimentin; cytoskeleton, 25.5 86 0.003 16.9 4.7 27 6-32 4-30 (86)
112 3rrk_A V-type ATPase 116 kDa s 25.5 1.2E+02 0.0042 18.7 5.0 33 6-38 103-138 (357)
113 2dfs_A Myosin-5A; myosin-V, in 25.5 1.4E+02 0.0048 22.5 5.1 20 5-24 1019-1038(1080)
114 4ati_A MITF, microphthalmia-as 24.7 51 0.0017 18.6 2.2 12 12-23 77-88 (118)
115 4gkw_A Spindle assembly abnorm 24.7 1.4E+02 0.0047 18.9 4.4 29 6-34 57-85 (167)
116 1wwv_A Connector enhancer of k 24.6 15 0.00053 20.0 -0.0 23 3-25 63-85 (91)
117 1zme_C Proline utilization tra 24.2 69 0.0024 15.3 2.6 17 6-22 48-64 (70)
118 4emc_A Monopolin complex subun 23.9 1.5E+02 0.005 18.9 4.8 17 18-34 43-59 (190)
119 2er8_A Regulatory protein Leu3 23.7 49 0.0017 16.0 1.8 17 5-21 52-68 (72)
120 3err_A Fusion protein of micro 23.7 1.6E+02 0.0055 20.4 4.9 32 5-36 176-207 (536)
121 3v86_A De novo design helix; c 23.4 69 0.0023 14.9 3.0 20 6-25 4-23 (27)
122 2v4h_A NF-kappa-B essential mo 23.2 31 0.0011 20.5 1.1 18 5-22 86-103 (110)
123 4ani_A Protein GRPE; chaperone 21.7 1.6E+02 0.0054 18.5 4.8 22 6-27 70-91 (213)
124 2v66_B Nuclear distribution pr 21.6 1.3E+02 0.0044 17.4 4.8 16 7-22 40-55 (111)
125 3hnw_A Uncharacterized protein 21.2 1.3E+02 0.0045 17.4 5.1 17 12-28 92-108 (138)
126 2d8c_A Phosphatidylcholine:cer 20.8 61 0.0021 17.7 2.0 17 3-19 69-85 (97)
127 2dq0_A Seryl-tRNA synthetase; 20.7 2E+02 0.0068 19.4 4.8 31 5-35 72-102 (455)
128 1ses_A Seryl-tRNA synthetase; 20.6 1.9E+02 0.0066 19.1 5.3 32 4-35 66-97 (421)
129 3mqp_B Phorbol-12-myristate-13 20.4 45 0.0015 15.4 1.1 10 28-37 7-16 (25)
No 1
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=95.83 E-value=0.012 Score=37.30 Aligned_cols=30 Identities=13% Similarity=0.272 Sum_probs=27.4
Q ss_pred hhHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy9706 5 HTLEEELKDLREENKKLKEESQNALQQLRR 34 (39)
Q Consensus 5 ~~Lq~Ev~~LRe~N~RLqeESqsA~~qLrk 34 (39)
..|++++.+|.++|.||+.|-+.+-+||.|
T Consensus 155 ~~L~~~n~~LqkeNeRL~~E~n~~l~qlEk 184 (184)
T 3w03_C 155 AENQAKNEHLQKENERLLRDWNDVQGRFEK 184 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 579999999999999999999999998864
No 2
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=95.19 E-value=0.021 Score=34.35 Aligned_cols=26 Identities=42% Similarity=0.428 Sum_probs=22.0
Q ss_pred hhHHHHHHHHHHHhHHHHHHHHHHHH
Q psy9706 5 HTLEEELKDLREENKKLKEESQNALQ 30 (39)
Q Consensus 5 ~~Lq~Ev~~LRe~N~RLqeESqsA~~ 30 (39)
..|++||.+||.+|++|.-|+.---+
T Consensus 68 ~eLe~everL~~ENq~L~~e~~~~~~ 93 (104)
T 3s9g_A 68 RELELELDRLRAENLQLLTENELHRQ 93 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 46999999999999999998875443
No 3
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=92.85 E-value=0.25 Score=31.18 Aligned_cols=33 Identities=12% Similarity=0.226 Sum_probs=29.7
Q ss_pred hhHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhh
Q psy9706 5 HTLEEELKDLREENKKLKEESQNALQQLRRFTE 37 (39)
Q Consensus 5 ~~Lq~Ev~~LRe~N~RLqeESqsA~~qLrkfte 37 (39)
..|++++.+|.+.|.+|+.+.....+||.+|..
T Consensus 135 ~~~~~~~~~L~~e~~~l~~~~~~l~~qlE~~v~ 167 (213)
T 1ik9_A 135 AENQAKNEHLQKENERLLRDWNDVQGRFEKAVS 167 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468899999999999999999999999999863
No 4
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=91.54 E-value=0.42 Score=24.84 Aligned_cols=31 Identities=29% Similarity=0.467 Sum_probs=24.4
Q ss_pred hhHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q psy9706 5 HTLEEELKDLREENKKLKEESQNALQQLRRF 35 (39)
Q Consensus 5 ~~Lq~Ev~~LRe~N~RLqeESqsA~~qLrkf 35 (39)
..|+.+|..|-.+|..|+.+...--.++..+
T Consensus 26 ~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~L 56 (63)
T 2wt7_A 26 DTLQAETDQLEDEKSALQTEIANLLKEKEKL 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4689999999999999999887655554443
No 5
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=90.84 E-value=0.48 Score=27.93 Aligned_cols=29 Identities=31% Similarity=0.448 Sum_probs=27.2
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy9706 6 TLEEELKDLREENKKLKEESQNALQQLRR 34 (39)
Q Consensus 6 ~Lq~Ev~~LRe~N~RLqeESqsA~~qLrk 34 (39)
.|..||..||.++.++.-|++..+.||+.
T Consensus 19 ~Lkreie~lk~ele~l~~E~q~~v~ql~~ 47 (120)
T 3i00_A 19 RLYREISGLKAQLENMKTESQRVVLQLKG 47 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999999985
No 6
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=90.45 E-value=0.79 Score=24.97 Aligned_cols=29 Identities=45% Similarity=0.776 Sum_probs=22.6
Q ss_pred hHHHHHHHHHHHhHHHH---HHHHHHHHHHHH
Q psy9706 6 TLEEELKDLREENKKLK---EESQNALQQLRR 34 (39)
Q Consensus 6 ~Lq~Ev~~LRe~N~RLq---eESqsA~~qLrk 34 (39)
+|-+||..|+++|.+|+ ||-|.|--.|-+
T Consensus 14 aLkDqV~eL~qe~k~m~k~lEeEqkARk~LE~ 45 (56)
T 2w6b_A 14 ALKDEVQELRQDNKKMKKSLEEEQRARKDLEK 45 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58899999999999997 666666555543
No 7
>3q4f_C DNA repair protein XRCC4; DSB repair, nuclear, recombination-recombination complex, DN protein-protein binding complex; HET: DNA; 5.50A {Homo sapiens}
Probab=89.83 E-value=0.28 Score=31.69 Aligned_cols=21 Identities=19% Similarity=0.276 Sum_probs=17.7
Q ss_pred hhHHHHHHHHHHHhHHHHHHH
Q psy9706 5 HTLEEELKDLREENKKLKEES 25 (39)
Q Consensus 5 ~~Lq~Ev~~LRe~N~RLqeES 25 (39)
..|+++..+|.++|+||+.|=
T Consensus 164 ~~L~a~N~hLqkENeRL~~e~ 184 (186)
T 3q4f_C 164 AENQAKNEHLQKENERLLRDW 184 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 568899999999999998763
No 8
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=89.28 E-value=0.24 Score=25.21 Aligned_cols=16 Identities=44% Similarity=0.754 Sum_probs=14.1
Q ss_pred HHHHHHHHHHhHHHHH
Q psy9706 8 EEELKDLREENKKLKE 23 (39)
Q Consensus 8 q~Ev~~LRe~N~RLqe 23 (39)
+.||++|+++|..|+|
T Consensus 20 deeIa~Lk~eN~eL~E 35 (37)
T 1t6f_A 20 DNEIARLKKENKELAE 35 (37)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhHHHHh
Confidence 5799999999998876
No 9
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=88.77 E-value=0.6 Score=24.02 Aligned_cols=24 Identities=33% Similarity=0.426 Sum_probs=19.9
Q ss_pred hhHHHHHHHHHHHhHHHHHHHHHH
Q psy9706 5 HTLEEELKDLREENKKLKEESQNA 28 (39)
Q Consensus 5 ~~Lq~Ev~~LRe~N~RLqeESqsA 28 (39)
..|+.+|..|..+|..|..+....
T Consensus 25 ~~LE~~v~~L~~eN~~L~~~~~~L 48 (55)
T 1dh3_A 25 KSLENRVAVLENQNKTLIEELKAL 48 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468999999999999999876554
No 10
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=88.13 E-value=1.7 Score=23.95 Aligned_cols=35 Identities=14% Similarity=0.288 Sum_probs=27.4
Q ss_pred hhHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhcC
Q psy9706 5 HTLEEELKDLREENKKLKEESQNALQQLRRFTEWT 39 (39)
Q Consensus 5 ~~Lq~Ev~~LRe~N~RLqeESqsA~~qLrkftew~ 39 (39)
..++..|..|..+|..|+.+...-...+..+...|
T Consensus 39 ~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ll 73 (78)
T 1gu4_A 39 LETQHKVLELTAENERLQKKVEQLSRELSTLRNLF 73 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35778899999999999999887777776665543
No 11
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=88.07 E-value=1.7 Score=24.90 Aligned_cols=34 Identities=26% Similarity=0.396 Sum_probs=31.1
Q ss_pred HhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhh
Q psy9706 4 RHTLEEELKDLREENKKLKEESQNALQQLRRFTE 37 (39)
Q Consensus 4 r~~Lq~Ev~~LRe~N~RLqeESqsA~~qLrkfte 37 (39)
-..|++|+.+|.+.-+.|-+-.....++|+.+|+
T Consensus 8 ~~~Lk~El~~L~~~E~~LD~~i~~~~~~l~~lte 41 (106)
T 2aze_B 8 LEGLTQDLRQLQESEQQLDHLMNICTTQLRLLSE 41 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3579999999999999999999999999999875
No 12
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=87.23 E-value=1.8 Score=23.40 Aligned_cols=30 Identities=23% Similarity=0.463 Sum_probs=27.2
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q psy9706 6 TLEEELKDLREENKKLKEESQNALQQLRRF 35 (39)
Q Consensus 6 ~Lq~Ev~~LRe~N~RLqeESqsA~~qLrkf 35 (39)
.|-.+|..|+-+|.-|..|.+.-+.||.|.
T Consensus 7 QL~~QVe~Lk~ENshLrrEL~dNS~~lskL 36 (54)
T 1deb_A 7 QLLKQVEALKMENSNLRQELEDNSNHLTKL 36 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHhhHHHHHHH
Confidence 577899999999999999999999999875
No 13
>3l4f_A RHO guanine nucleotide exchange factor 7; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Probab=87.04 E-value=1.7 Score=23.78 Aligned_cols=29 Identities=45% Similarity=0.776 Sum_probs=22.8
Q ss_pred hHHHHHHHHHHHhHHHH---HHHHHHHHHHHH
Q psy9706 6 TLEEELKDLREENKKLK---EESQNALQQLRR 34 (39)
Q Consensus 6 ~Lq~Ev~~LRe~N~RLq---eESqsA~~qLrk 34 (39)
+|-.||..|+++|+++. |++|.|--.|.+
T Consensus 11 alkDev~eLk~e~k~~k~~le~eqraRk~LE~ 42 (61)
T 3l4f_A 11 ALKDEVQELRQDNKKMKKSLEEEQRARKDLEK 42 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47789999999999887 677777666654
No 14
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=86.73 E-value=1.5 Score=24.71 Aligned_cols=32 Identities=16% Similarity=0.365 Sum_probs=24.4
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhh
Q psy9706 6 TLEEELKDLREENKKLKEESQNALQQLRRFTE 37 (39)
Q Consensus 6 ~Lq~Ev~~LRe~N~RLqeESqsA~~qLrkfte 37 (39)
.++.+|..|.++|..|+.+...-..++..+-.
T Consensus 40 e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ 71 (87)
T 1hjb_A 40 ETQHKVLELTAENERLQKKVEQLSRELSTLRN 71 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778889999999999888776666655443
No 15
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=85.03 E-value=1.2 Score=23.43 Aligned_cols=27 Identities=22% Similarity=0.356 Sum_probs=21.3
Q ss_pred hhHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy9706 5 HTLEEELKDLREENKKLKEESQNALQQ 31 (39)
Q Consensus 5 ~~Lq~Ev~~LRe~N~RLqeESqsA~~q 31 (39)
..|+.+|..|..+|..|..|....-++
T Consensus 33 ~~Le~~v~~L~~eN~~L~~ev~~Lr~~ 59 (63)
T 2dgc_A 33 KQLEDKVEELLSKNYHLENEVARLKKL 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468999999999999998876554433
No 16
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=84.78 E-value=1.8 Score=22.34 Aligned_cols=29 Identities=24% Similarity=0.383 Sum_probs=19.7
Q ss_pred hhHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy9706 5 HTLEEELKDLREENKKLKEESQNALQQLR 33 (39)
Q Consensus 5 ~~Lq~Ev~~LRe~N~RLqeESqsA~~qLr 33 (39)
..|+.|+..|+..+..|+++-+...++|.
T Consensus 22 eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 22 ELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35677777777777777777666666654
No 17
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=83.54 E-value=1.6 Score=23.46 Aligned_cols=24 Identities=21% Similarity=0.365 Sum_probs=19.4
Q ss_pred hhHHHHHHHHHHHhHHHHHHHHHH
Q psy9706 5 HTLEEELKDLREENKKLKEESQNA 28 (39)
Q Consensus 5 ~~Lq~Ev~~LRe~N~RLqeESqsA 28 (39)
..|+.++..|.++|..|+.+.++-
T Consensus 53 ~~Lq~~~~~L~~e~~~L~~~~~~~ 76 (82)
T 1am9_A 53 RFLQHSNQKLKQENLSLRTAVHKS 76 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 358889999999999998877653
No 18
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=82.50 E-value=3.4 Score=20.95 Aligned_cols=28 Identities=25% Similarity=0.345 Sum_probs=20.7
Q ss_pred hhHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy9706 5 HTLEEELKDLREENKKLKEESQNALQQL 32 (39)
Q Consensus 5 ~~Lq~Ev~~LRe~N~RLqeESqsA~~qL 32 (39)
..|+.+|..|-.+|..|+.+...--.++
T Consensus 25 ~~Le~~~~~L~~~n~~L~~~i~~L~~e~ 52 (61)
T 1t2k_D 25 QSLEKKAEDLSSLNGQLQSEVTLLRNEV 52 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578888888888888888766554443
No 19
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=82.06 E-value=3.8 Score=21.22 Aligned_cols=31 Identities=39% Similarity=0.473 Sum_probs=27.1
Q ss_pred hhHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q psy9706 5 HTLEEELKDLREENKKLKEESQNALQQLRRF 35 (39)
Q Consensus 5 ~~Lq~Ev~~LRe~N~RLqeESqsA~~qLrkf 35 (39)
..|+.++..|-..|.+|-+.-..|-++|.+.
T Consensus 12 ~~l~~~l~~L~~rN~rL~~~L~~AR~el~~L 42 (51)
T 3m91_A 12 HQLEARIDSLAARNSKLMETLKEARQQLLAL 42 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4689999999999999999999998888764
No 20
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=81.78 E-value=3 Score=21.28 Aligned_cols=28 Identities=29% Similarity=0.430 Sum_probs=21.4
Q ss_pred hhHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy9706 5 HTLEEELKDLREENKKLKEESQNALQQL 32 (39)
Q Consensus 5 ~~Lq~Ev~~LRe~N~RLqeESqsA~~qL 32 (39)
..|+.+|..|..+|..|..+...--.++
T Consensus 25 ~~Le~~v~~L~~~n~~L~~~v~~L~~e~ 52 (62)
T 1jnm_A 25 ARLEEKVKTLKAQNSELASTANMLREQV 52 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3588999999999999988876544443
No 21
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=81.37 E-value=0.92 Score=21.80 Aligned_cols=17 Identities=29% Similarity=0.610 Sum_probs=13.4
Q ss_pred HHHHHHHhHHHHHHHHH
Q psy9706 11 LKDLREENKKLKEESQN 27 (39)
Q Consensus 11 v~~LRe~N~RLqeESqs 27 (39)
+++|.+.|.||+.|...
T Consensus 2 irrlkqknarlkqeiaa 18 (28)
T 3ra3_B 2 IRRLKQKNARLKQEIAA 18 (28)
T ss_dssp -CHHHHHHHHHHHHHHH
T ss_pred hhHHHHhhhHHHHHHHH
Confidence 67899999999988643
No 22
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=81.13 E-value=5.4 Score=22.50 Aligned_cols=20 Identities=35% Similarity=0.516 Sum_probs=9.5
Q ss_pred HHHHhHHHHHHHHHHHHHHH
Q psy9706 14 LREENKKLKEESQNALQQLR 33 (39)
Q Consensus 14 LRe~N~RLqeESqsA~~qLr 33 (39)
|+++|++|++|-.+=-..|+
T Consensus 53 L~~en~qLk~E~~~wq~Rl~ 72 (81)
T 2jee_A 53 LERENNHLKEQQNGWQERLQ 72 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44455555555444444443
No 23
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=80.06 E-value=1.4 Score=25.23 Aligned_cols=20 Identities=40% Similarity=0.566 Sum_probs=15.4
Q ss_pred hHHHHHHHHHHHhHHHHHHH
Q psy9706 6 TLEEELKDLREENKKLKEES 25 (39)
Q Consensus 6 ~Lq~Ev~~LRe~N~RLqeES 25 (39)
.+++||..|+++|.+|++=.
T Consensus 49 ~~~eEi~~Lk~en~~L~elA 68 (83)
T 1wlq_A 49 QKDSEIARLRKENKDLAEVA 68 (83)
T ss_dssp HHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 46778888999998888643
No 24
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=79.66 E-value=4.4 Score=27.27 Aligned_cols=32 Identities=19% Similarity=0.297 Sum_probs=22.3
Q ss_pred HhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q psy9706 4 RHTLEEELKDLREENKKLKEESQNALQQLRRF 35 (39)
Q Consensus 4 r~~Lq~Ev~~LRe~N~RLqeESqsA~~qLrkf 35 (39)
+..|++|+..|++....|+++.....+.+...
T Consensus 5 ~~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~ 36 (412)
T 3u06_A 5 HAALSTEVVHLRQRTEELLRCNEQQAAELETC 36 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57788888888877777776666665555443
No 25
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=77.93 E-value=2.6 Score=23.75 Aligned_cols=20 Identities=40% Similarity=0.566 Sum_probs=15.1
Q ss_pred hHHHHHHHHHHHhHHHHHHH
Q psy9706 6 TLEEELKDLREENKKLKEES 25 (39)
Q Consensus 6 ~Lq~Ev~~LRe~N~RLqeES 25 (39)
.+++||..|+++|..|++-.
T Consensus 45 ~~~eEi~~LkeEN~~L~el~ 64 (79)
T 2zxx_A 45 QKDSEIARLRKENKDLAEVA 64 (79)
T ss_dssp HHHHHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 35678888999998887643
No 26
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=77.14 E-value=4.5 Score=22.81 Aligned_cols=25 Identities=40% Similarity=0.611 Sum_probs=20.2
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHH
Q psy9706 6 TLEEELKDLREENKKLKEESQNALQ 30 (39)
Q Consensus 6 ~Lq~Ev~~LRe~N~RLqeESqsA~~ 30 (39)
-||-||..|++.|..|.++-+.|..
T Consensus 24 lLqmEieELKekN~~L~~e~~e~~~ 48 (81)
T 2jee_A 24 LLQMEIEELKEKNNSLSQEVQNAQH 48 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4788999999999999888777443
No 27
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=76.65 E-value=0.64 Score=24.08 Aligned_cols=20 Identities=20% Similarity=0.438 Sum_probs=16.2
Q ss_pred hHHHHHHHHHHHhHHHHHHH
Q psy9706 6 TLEEELKDLREENKKLKEES 25 (39)
Q Consensus 6 ~Lq~Ev~~LRe~N~RLqeES 25 (39)
...+|++.|+.+|.+|+.|.
T Consensus 63 ~~~~ei~~L~~e~~~L~~e~ 82 (97)
T 2jn6_A 63 SEAEQIRQLKKENALQRART 82 (97)
T ss_dssp HTHHHHHHHHHCGGGGGGTT
T ss_pred ChHHHHHHHHHHHHHHHHHH
Confidence 45788999999999998763
No 28
>4dzo_A Mitotic spindle assembly checkpoint protein MAD1; homodimer, kinetochore, mitosis, spindle checkpoint protein, nucleus, cell cycle; HET: MSE; 1.76A {Homo sapiens}
Probab=76.61 E-value=6.5 Score=22.89 Aligned_cols=30 Identities=27% Similarity=0.465 Sum_probs=25.9
Q ss_pred hhHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy9706 5 HTLEEELKDLREENKKLKEESQNALQQLRR 34 (39)
Q Consensus 5 ~~Lq~Ev~~LRe~N~RLqeESqsA~~qLrk 34 (39)
..|++||.++.--|+||+|-=...+...|.
T Consensus 7 ~~l~~qi~~~ekr~~RLKevF~~ks~eFRe 36 (123)
T 4dzo_A 7 AELKKQVESAELKNQRLKEVFQTKIQEFRK 36 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 579999999999999999988877776665
No 29
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=76.23 E-value=5.8 Score=20.87 Aligned_cols=29 Identities=17% Similarity=0.197 Sum_probs=16.8
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy9706 6 TLEEELKDLREENKKLKEESQNALQQLRR 34 (39)
Q Consensus 6 ~Lq~Ev~~LRe~N~RLqeESqsA~~qLrk 34 (39)
.|+.+++.|..+...|+.+...--++|..
T Consensus 51 ~L~~~~~~l~~e~~~L~~~~~~L~~~l~~ 79 (83)
T 1nkp_B 51 YMRRKNHTHQQDIDDLKRQNALLEQQVRA 79 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666665555555543
No 30
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=74.30 E-value=2.5 Score=21.07 Aligned_cols=19 Identities=16% Similarity=0.281 Sum_probs=12.8
Q ss_pred hHHHHHHHHHHHhHHHHHH
Q psy9706 6 TLEEELKDLREENKKLKEE 24 (39)
Q Consensus 6 ~Lq~Ev~~LRe~N~RLqeE 24 (39)
.|++-|..|=..|.-|+.|
T Consensus 5 QLEdKVEeLl~~~~~Le~E 23 (34)
T 3c3f_A 5 QIEXKLEXILSXLYHXENE 23 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHHH
Confidence 4666777777777766655
No 31
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=73.97 E-value=2.5 Score=20.88 Aligned_cols=19 Identities=11% Similarity=0.261 Sum_probs=12.4
Q ss_pred hHHHHHHHHHHHhHHHHHH
Q psy9706 6 TLEEELKDLREENKKLKEE 24 (39)
Q Consensus 6 ~Lq~Ev~~LRe~N~RLqeE 24 (39)
.|++-|..|=..|.-|+.|
T Consensus 4 QLEdKvEeLl~~~~~Le~E 22 (33)
T 3c3g_A 4 XIEXKLXEIXSKXYHXENX 22 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHH
Confidence 4666667777777666655
No 32
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=73.32 E-value=3.2 Score=23.71 Aligned_cols=16 Identities=38% Similarity=0.636 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHhHHHH
Q psy9706 7 LEEELKDLREENKKLK 22 (39)
Q Consensus 7 Lq~Ev~~LRe~N~RLq 22 (39)
|+.|+..|++.|..|+
T Consensus 58 l~eEi~~lk~en~eL~ 73 (83)
T 1uii_A 58 KDNEIARLKKENKELA 73 (83)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444555555554444
No 33
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=73.12 E-value=6.3 Score=19.40 Aligned_cols=21 Identities=29% Similarity=0.435 Sum_probs=17.7
Q ss_pred hHHHHHHHHHHHhHHHHHHHH
Q psy9706 6 TLEEELKDLREENKKLKEESQ 26 (39)
Q Consensus 6 ~Lq~Ev~~LRe~N~RLqeESq 26 (39)
.|++.|..|...|..|+.|..
T Consensus 4 QLE~kVEeLl~~n~~Le~EV~ 24 (33)
T 3m48_A 4 QLEAKVEELLSKNWNLENEVA 24 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHH
Confidence 588999999999999988753
No 34
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=72.33 E-value=2.9 Score=20.75 Aligned_cols=19 Identities=16% Similarity=0.463 Sum_probs=11.5
Q ss_pred hHHHHHHHHHHHhHHHHHH
Q psy9706 6 TLEEELKDLREENKKLKEE 24 (39)
Q Consensus 6 ~Lq~Ev~~LRe~N~RLqeE 24 (39)
.|++-|..|=..|.-|+.|
T Consensus 5 QLEdKvEeLl~~~~~L~~E 23 (34)
T 2bni_A 5 QIEDKLEEILSKGHHICNE 23 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccHHHHHH
Confidence 4566666666666666554
No 35
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=71.99 E-value=8.4 Score=19.88 Aligned_cols=24 Identities=33% Similarity=0.506 Sum_probs=18.9
Q ss_pred hhHHHHHHHHHHHhHHHHHHHHHH
Q psy9706 5 HTLEEELKDLREENKKLKEESQNA 28 (39)
Q Consensus 5 ~~Lq~Ev~~LRe~N~RLqeESqsA 28 (39)
..|+.++..|.+.|..|..+..+-
T Consensus 26 ~~le~~~~~L~~~N~~L~~~i~~L 49 (63)
T 1ci6_A 26 EALTGECKELEKKNEALKERADSL 49 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468888899999998888776544
No 36
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=71.42 E-value=3.2 Score=20.65 Aligned_cols=20 Identities=30% Similarity=0.478 Sum_probs=13.7
Q ss_pred hHHHHHHHHHHHhHHHHHHH
Q psy9706 6 TLEEELKDLREENKKLKEES 25 (39)
Q Consensus 6 ~Lq~Ev~~LRe~N~RLqeES 25 (39)
.|++-|..|=..|.-|+.|-
T Consensus 5 QLE~kVEeLl~~n~~Le~eV 24 (34)
T 2oxj_A 5 QLEXKVXELLXKNXHLEXEV 24 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHH
Confidence 46777777777777776653
No 37
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=71.41 E-value=10 Score=24.39 Aligned_cols=28 Identities=29% Similarity=0.287 Sum_probs=19.3
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy9706 6 TLEEELKDLREENKKLKEESQNALQQLR 33 (39)
Q Consensus 6 ~Lq~Ev~~LRe~N~RLqeESqsA~~qLr 33 (39)
..+.|+.+|+++|.||+.+.+..-.++.
T Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (487)
T 3oja_A 439 MYQHKETQLAEENARLKKLNGEADLALA 466 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHhhhhhhhhhhhhhhhH
Confidence 4567777888888888877666555543
No 38
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=71.27 E-value=9.8 Score=21.62 Aligned_cols=23 Identities=22% Similarity=0.420 Sum_probs=13.5
Q ss_pred hhHHHHHHHHHHHhHHHHHHHHH
Q psy9706 5 HTLEEELKDLREENKKLKEESQN 27 (39)
Q Consensus 5 ~~Lq~Ev~~LRe~N~RLqeESqs 27 (39)
..|+.|+..|+++|.++..|-..
T Consensus 58 ~~L~~e~~~L~~e~~~~~~e~d~ 80 (90)
T 2wt7_B 58 TQLIQQVEQLKQEVSRLARERDA 80 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666666655443
No 39
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=71.04 E-value=8.6 Score=22.28 Aligned_cols=29 Identities=34% Similarity=0.469 Sum_probs=22.6
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy9706 6 TLEEELKDLREENKKLKEESQNALQQLRR 34 (39)
Q Consensus 6 ~Lq~Ev~~LRe~N~RLqeESqsA~~qLrk 34 (39)
.|..+|..|+.+|.||.++-..-=.+|-+
T Consensus 16 ~lr~ei~~Le~E~~rLr~~~~~LE~~Le~ 44 (100)
T 1go4_E 16 TLRLKVEELEGERSRLEEEKRMLEAQLER 44 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57788999999999999887766555544
No 40
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=70.80 E-value=11 Score=20.78 Aligned_cols=28 Identities=7% Similarity=0.215 Sum_probs=14.9
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy9706 6 TLEEELKDLREENKKLKEESQNALQQLR 33 (39)
Q Consensus 6 ~Lq~Ev~~LRe~N~RLqeESqsA~~qLr 33 (39)
.|+.||+.||-.+..++-+......+.+
T Consensus 31 ~Lq~Ev~~LRGqiE~~~~~l~ql~~rQr 58 (83)
T 2xdj_A 31 DNQSDIDSLRGQIQENQYQLNQVVERQK 58 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 4556666666555555555444444443
No 41
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=70.36 E-value=9.3 Score=24.99 Aligned_cols=18 Identities=39% Similarity=0.632 Sum_probs=13.1
Q ss_pred hHHHHHHHHHHHhHHHHH
Q psy9706 6 TLEEELKDLREENKKLKE 23 (39)
Q Consensus 6 ~Lq~Ev~~LRe~N~RLqe 23 (39)
.|+.||+.|+++|..|++
T Consensus 126 ~l~eEi~~LkeEn~eLke 143 (209)
T 2wvr_A 126 QKDNEIARLKKENKELAE 143 (209)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 466778888888877764
No 42
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=69.83 E-value=4 Score=20.47 Aligned_cols=19 Identities=32% Similarity=0.501 Sum_probs=11.2
Q ss_pred hHHHHHHHHHHHhHHHHHH
Q psy9706 6 TLEEELKDLREENKKLKEE 24 (39)
Q Consensus 6 ~Lq~Ev~~LRe~N~RLqeE 24 (39)
.|++.|..|=..|.-|+.|
T Consensus 5 QLE~kVEeLl~~~~~Le~E 23 (36)
T 1kd8_A 5 QLEAEVEEIESEVWHLENE 23 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHH
Confidence 4566666666666655544
No 43
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=69.35 E-value=4.4 Score=23.04 Aligned_cols=29 Identities=28% Similarity=0.467 Sum_probs=23.8
Q ss_pred HhhHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy9706 4 RHTLEEELKDLREENKKLKEESQNALQQL 32 (39)
Q Consensus 4 r~~Lq~Ev~~LRe~N~RLqeESqsA~~qL 32 (39)
+..|+++|+.|.+.-..|..+.+.+.++|
T Consensus 3 ~~~L~~~i~~L~~q~~~L~~ei~~~~a~L 31 (85)
T 3viq_B 3 KSQLESRVHLLEQQKEQLESSLQDALAKL 31 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46789999999999999988888776654
No 44
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=69.06 E-value=5 Score=20.47 Aligned_cols=23 Identities=4% Similarity=0.127 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHH
Q psy9706 7 LEEELKDLREENKKLKEESQNAL 29 (39)
Q Consensus 7 Lq~Ev~~LRe~N~RLqeESqsA~ 29 (39)
+..++..|..+|..|+++....-
T Consensus 32 v~~~~~~l~~e~~~L~~~~~~l~ 54 (57)
T 2wuj_A 32 VRKDYEIVLRKKTELEAKVNELD 54 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666666554443
No 45
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=68.56 E-value=10 Score=19.61 Aligned_cols=27 Identities=15% Similarity=0.250 Sum_probs=21.9
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy9706 6 TLEEELKDLREENKKLKEESQNALQQL 32 (39)
Q Consensus 6 ~Lq~Ev~~LRe~N~RLqeESqsA~~qL 32 (39)
.|..+|..||-+-+--++|...|-++|
T Consensus 22 qLssdV~al~~~v~~ak~eA~RAN~Rl 48 (52)
T 1jcd_A 22 QASNDANAARSDAQAAKDDAARANQRA 48 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 577888888888888888888887776
No 46
>1got_G GT-gamma; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: a.137.3.1 PDB: 1tbg_E 2trc_G 1b9y_B 1b9x_B 1a0r_G*
Probab=67.49 E-value=3.3 Score=22.59 Aligned_cols=33 Identities=18% Similarity=0.309 Sum_probs=20.3
Q ss_pred hhHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhh
Q psy9706 5 HTLEEELKDLREENKKLKEESQNALQQLRRFTE 37 (39)
Q Consensus 5 ~~Lq~Ev~~LRe~N~RLqeESqsA~~qLrkfte 37 (39)
..+..+|..||.+-.+=.--..-|++.|.+|.+
T Consensus 20 ~~lr~~veqLr~el~~~RikVS~aa~~L~~Yce 52 (73)
T 1got_G 20 DKLKMEVDQLKKEVTLERMLVSKCCEEFRDYVE 52 (73)
T ss_dssp HHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCchhhHHHHHHHHHHHHH
Confidence 345555555555554444445677888888874
No 47
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=67.00 E-value=14 Score=20.46 Aligned_cols=32 Identities=16% Similarity=0.386 Sum_probs=25.8
Q ss_pred HhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q psy9706 4 RHTLEEELKDLREENKKLKEESQNALQQLRRF 35 (39)
Q Consensus 4 r~~Lq~Ev~~LRe~N~RLqeESqsA~~qLrkf 35 (39)
...++.||.+|...|+-|.++...+-.+|...
T Consensus 39 ~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea 70 (101)
T 3u1c_A 39 SKQLEDDIVQLEKQLRVTEDSRDQVLEELHKS 70 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678899999999999988888777777654
No 48
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=66.57 E-value=6 Score=20.86 Aligned_cols=20 Identities=40% Similarity=0.614 Sum_probs=16.7
Q ss_pred hhHHHHHHHHHHHhHHHHHH
Q psy9706 5 HTLEEELKDLREENKKLKEE 24 (39)
Q Consensus 5 ~~Lq~Ev~~LRe~N~RLqeE 24 (39)
+.|+.||++|-.+|.-|+..
T Consensus 6 aqlenevaslenenetlkkk 25 (49)
T 3he5_A 6 AQLENEVASLENENETLKKK 25 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcccHHHHHh
Confidence 57899999999999887754
No 49
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=65.33 E-value=5 Score=19.90 Aligned_cols=19 Identities=21% Similarity=0.401 Sum_probs=13.8
Q ss_pred hHHHHHHHHHHHhHHHHHH
Q psy9706 6 TLEEELKDLREENKKLKEE 24 (39)
Q Consensus 6 ~Lq~Ev~~LRe~N~RLqeE 24 (39)
.|++-|..|=..|.-|+.|
T Consensus 5 QLEdkVEeLl~~~~~Le~e 23 (34)
T 2hy6_A 5 QLADAVEELASANYHLANA 23 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHH
Confidence 4777788888888777654
No 50
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=64.69 E-value=5.2 Score=19.81 Aligned_cols=20 Identities=10% Similarity=0.230 Sum_probs=14.5
Q ss_pred hHHHHHHHHHHHhHHHHHHH
Q psy9706 6 TLEEELKDLREENKKLKEES 25 (39)
Q Consensus 6 ~Lq~Ev~~LRe~N~RLqeES 25 (39)
.|++.|..|=..|.-|+.|-
T Consensus 5 QLEdKVEeLl~~n~~Le~EV 24 (34)
T 1uo4_A 5 QIEDKGEEILSKLYHIENEL 24 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHH
Confidence 57777777777777776663
No 51
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=64.59 E-value=9.8 Score=25.08 Aligned_cols=31 Identities=39% Similarity=0.473 Sum_probs=23.6
Q ss_pred hhHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q psy9706 5 HTLEEELKDLREENKKLKEESQNALQQLRRF 35 (39)
Q Consensus 5 ~~Lq~Ev~~LRe~N~RLqeESqsA~~qLrkf 35 (39)
..|+.++..|-.+|.+|.++-..+-.+|.+.
T Consensus 57 ~eL~~ql~~L~arNe~L~~~Lk~ar~El~~L 87 (251)
T 3m9b_A 57 HQLEARIDSLAARNSKLMETLKEARQQLLAL 87 (251)
T ss_dssp HHHHHHHHHHTTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678888888888888888877777776654
No 52
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=64.58 E-value=5.2 Score=20.05 Aligned_cols=19 Identities=21% Similarity=0.415 Sum_probs=11.7
Q ss_pred hHHHHHHHHHHHhHHHHHH
Q psy9706 6 TLEEELKDLREENKKLKEE 24 (39)
Q Consensus 6 ~Lq~Ev~~LRe~N~RLqeE 24 (39)
.|++-|..|-..|.-|+.|
T Consensus 5 QLE~KVEeLl~~~~~Le~e 23 (36)
T 1kd8_B 5 QLKAKVEELKSKLWHLKNK 23 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHH
Confidence 4666666666666666554
No 53
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=64.50 E-value=7.7 Score=20.63 Aligned_cols=24 Identities=29% Similarity=0.494 Sum_probs=16.5
Q ss_pred hHhhHHHHHHHHHHHhHHHHHHHH
Q psy9706 3 RRHTLEEELKDLREENKKLKEESQ 26 (39)
Q Consensus 3 ~r~~Lq~Ev~~LRe~N~RLqeESq 26 (39)
+-..|+.=+++||.+..||..|..
T Consensus 25 deqnlekiianlrdeiarleneva 48 (52)
T 3he5_B 25 DEQNLEKIIANLRDEIARLENEVA 48 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHhhHHHHHHHHHHHHHHHHHHHh
Confidence 445566677788888888776643
No 54
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=62.87 E-value=12 Score=18.32 Aligned_cols=22 Identities=23% Similarity=0.521 Sum_probs=19.3
Q ss_pred hhHHHHHHHHHHHhHHHHHHHH
Q psy9706 5 HTLEEELKDLREENKKLKEESQ 26 (39)
Q Consensus 5 ~~Lq~Ev~~LRe~N~RLqeESq 26 (39)
.+.+++|..|+..|.-|.++.-
T Consensus 10 ~a~qqDIddlkrQN~~Le~Qir 31 (34)
T 1a93_B 10 DTHQQDIDDLKRQNALLEQQVR 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHhhHHHHHHHHHHHHHHHH
Confidence 5789999999999999998763
No 55
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=62.35 E-value=11 Score=21.13 Aligned_cols=21 Identities=29% Similarity=0.496 Sum_probs=15.2
Q ss_pred hHHHHHHHHHHHhHHHHHHHH
Q psy9706 6 TLEEELKDLREENKKLKEESQ 26 (39)
Q Consensus 6 ~Lq~Ev~~LRe~N~RLqeESq 26 (39)
.|+++...|+++..+|++|..
T Consensus 11 ~l~~~~~~l~~~i~~lkeel~ 31 (109)
T 2wg5_A 11 QLEDKVEELLSKNYHLENEVA 31 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 577777777777777777654
No 56
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=62.24 E-value=2.6 Score=24.54 Aligned_cols=25 Identities=32% Similarity=0.509 Sum_probs=13.6
Q ss_pred hHhhHHHHHHHHHHHhHHHHHHHHH
Q psy9706 3 RRHTLEEELKDLREENKKLKEESQN 27 (39)
Q Consensus 3 ~r~~Lq~Ev~~LRe~N~RLqeESqs 27 (39)
.|..|+.+++.|+..|.+|..+++.
T Consensus 69 eKe~L~~ql~~lq~q~~~L~~~~~~ 93 (94)
T 3jsv_C 69 KKEYLQEQLEQLQREFNKLKVGCHE 93 (94)
T ss_dssp TTSHHHHHHHHHHHTTC--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3567888888888888888887654
No 57
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=62.19 E-value=3.5 Score=25.92 Aligned_cols=21 Identities=19% Similarity=0.191 Sum_probs=9.9
Q ss_pred hHHHHHHHHHHHhHHHHHHHH
Q psy9706 6 TLEEELKDLREENKKLKEESQ 26 (39)
Q Consensus 6 ~Lq~Ev~~LRe~N~RLqeESq 26 (39)
.|.+|.+.|+++|.+|+.+.+
T Consensus 23 ~l~~eN~~Lk~e~~~l~~~~~ 43 (255)
T 2j5u_A 23 NTYTENQHLKERLEELAQLES 43 (255)
T ss_dssp ---CTTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344555556666655554443
No 58
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=61.47 E-value=6.6 Score=19.35 Aligned_cols=20 Identities=15% Similarity=0.200 Sum_probs=12.9
Q ss_pred hHHHHHHHHHHHhHHHHHHH
Q psy9706 6 TLEEELKDLREENKKLKEES 25 (39)
Q Consensus 6 ~Lq~Ev~~LRe~N~RLqeES 25 (39)
.|++-|..|=..|.-|+.|.
T Consensus 4 QLEdKVEell~~~~~le~EV 23 (33)
T 2wq1_A 4 QLEDKIEENTSKIYHNTNEI 23 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHH
Confidence 46666777777776666553
No 59
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=60.55 E-value=15 Score=19.71 Aligned_cols=21 Identities=24% Similarity=0.322 Sum_probs=12.5
Q ss_pred hHHHHHHHHHHHhHHHHHHHH
Q psy9706 6 TLEEELKDLREENKKLKEESQ 26 (39)
Q Consensus 6 ~Lq~Ev~~LRe~N~RLqeESq 26 (39)
.|+.+|..|...|..|..|.+
T Consensus 33 ~LE~~v~~le~~~~~l~~en~ 53 (70)
T 1gd2_E 33 ALETQVVTLKELHSSTTLEND 53 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 466677777665555554443
No 60
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=59.36 E-value=19 Score=19.32 Aligned_cols=27 Identities=22% Similarity=0.313 Sum_probs=15.7
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy9706 6 TLEEELKDLREENKKLKEESQNALQQL 32 (39)
Q Consensus 6 ~Lq~Ev~~LRe~N~RLqeESqsA~~qL 32 (39)
.|+.+.+.|.+++.+|+.+...--++|
T Consensus 51 ~L~~~~~~l~~e~~~L~~e~~~L~~~L 77 (80)
T 1nlw_A 51 KLEDSDRKAVHQIDQLQREQRHLKRQL 77 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666655554444
No 61
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=58.80 E-value=18 Score=19.60 Aligned_cols=19 Identities=32% Similarity=0.370 Sum_probs=9.7
Q ss_pred hHHHHHHHHHHHhHHHHHH
Q psy9706 6 TLEEELKDLREENKKLKEE 24 (39)
Q Consensus 6 ~Lq~Ev~~LRe~N~RLqeE 24 (39)
.|+.++..|+..|+.|+.+
T Consensus 63 ~l~~~~~~L~~~n~~L~~r 81 (88)
T 1nkp_A 63 KLISEEDLLRKRREQLKHK 81 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555544
No 62
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=57.10 E-value=12 Score=18.26 Aligned_cols=19 Identities=37% Similarity=0.597 Sum_probs=11.8
Q ss_pred hHHHHHHHHHHHhHHHHHH
Q psy9706 6 TLEEELKDLREENKKLKEE 24 (39)
Q Consensus 6 ~Lq~Ev~~LRe~N~RLqeE 24 (39)
.|+++|++|.---|.||+-
T Consensus 3 rlee~~r~l~~ivq~lq~r 21 (32)
T 2akf_A 3 RLEEDVRNLNAIVQKLQER 21 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 3666777766666666653
No 63
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=57.09 E-value=11 Score=19.73 Aligned_cols=18 Identities=11% Similarity=0.193 Sum_probs=9.2
Q ss_pred hHHHHHHHHHHHhHHHHH
Q psy9706 6 TLEEELKDLREENKKLKE 23 (39)
Q Consensus 6 ~Lq~Ev~~LRe~N~RLqe 23 (39)
.|+.+++.|.+++..|+.
T Consensus 61 ~L~~~~~~L~~e~~~L~~ 78 (80)
T 1hlo_A 61 YMRRKNHTHQQDIDDLKR 78 (80)
T ss_dssp HHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 345555555555555544
No 64
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=56.59 E-value=24 Score=21.00 Aligned_cols=30 Identities=30% Similarity=0.469 Sum_probs=22.6
Q ss_pred hhHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy9706 5 HTLEEELKDLREENKKLKEESQNALQQLRR 34 (39)
Q Consensus 5 ~~Lq~Ev~~LRe~N~RLqeESqsA~~qLrk 34 (39)
..|+..+..|-++|.||+-.|.....+++.
T Consensus 40 l~LE~~~s~le~e~~rlr~~~~~~~~~v~e 69 (104)
T 3s9g_A 40 LELEKSLSRMEDENNRLRLESKRLDARVRE 69 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchhhHHH
Confidence 357888888999999999877766655543
No 65
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=56.39 E-value=12 Score=25.29 Aligned_cols=30 Identities=23% Similarity=0.480 Sum_probs=18.7
Q ss_pred hhHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy9706 5 HTLEEELKDLREENKKLKEESQNALQQLRR 34 (39)
Q Consensus 5 ~~Lq~Ev~~LRe~N~RLqeESqsA~~qLrk 34 (39)
..|+.|++-|+.+++|+..|......+++.
T Consensus 35 ~~le~e~~~l~~e~~r~~~e~~~~~~~~~~ 64 (434)
T 4b4t_M 35 KLLDNEIRIFRSELQRLSHENNVMLEKIKD 64 (434)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357888888898999988887776666554
No 66
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=56.37 E-value=25 Score=19.90 Aligned_cols=23 Identities=22% Similarity=0.297 Sum_probs=16.1
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHH
Q psy9706 6 TLEEELKDLREENKKLKEESQNA 28 (39)
Q Consensus 6 ~Lq~Ev~~LRe~N~RLqeESqsA 28 (39)
..+.||..|+..+..|+..-..+
T Consensus 15 ~~e~e~~~l~~~~~el~~~l~~~ 37 (125)
T 1joc_A 15 KGEGEIEKLQTKVLELQRKLDNT 37 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHH
Confidence 34678889998888888544333
No 67
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=55.67 E-value=6.8 Score=22.12 Aligned_cols=15 Identities=20% Similarity=0.501 Sum_probs=8.6
Q ss_pred HHHHHHHhHHHHHHH
Q psy9706 11 LKDLREENKKLKEES 25 (39)
Q Consensus 11 v~~LRe~N~RLqeES 25 (39)
|+.|+++|+|+.++-
T Consensus 41 I~~Lq~e~~r~~e~e 55 (83)
T 4ath_A 41 IRKLQREQQRAKDLE 55 (83)
T ss_dssp HHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 455666666665543
No 68
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=55.26 E-value=25 Score=22.67 Aligned_cols=15 Identities=33% Similarity=0.638 Sum_probs=7.0
Q ss_pred HHHHHHHHhHHHHHH
Q psy9706 10 ELKDLREENKKLKEE 24 (39)
Q Consensus 10 Ev~~LRe~N~RLqeE 24 (39)
|+.+|.++|++|++|
T Consensus 186 eie~L~~~~~~L~eE 200 (315)
T 2ve7_A 186 KLESLEAKNRALNEQ 200 (315)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444444
No 69
>3e98_A GAF domain of unknown function; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.43A {Pseudomonas aeruginosa}
Probab=54.83 E-value=23 Score=22.12 Aligned_cols=20 Identities=25% Similarity=0.449 Sum_probs=15.8
Q ss_pred HHHHHHHHHHhHHHHHHHHH
Q psy9706 8 EEELKDLREENKKLKEESQN 27 (39)
Q Consensus 8 q~Ev~~LRe~N~RLqeESqs 27 (39)
+-+|..||+.|+.|+++-.+
T Consensus 71 erQ~~~LR~r~~~Le~~L~~ 90 (252)
T 3e98_A 71 ERQVRLLRERNIEMRHRLSQ 90 (252)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55788999999999877643
No 70
>3viq_A SWI5-dependent recombination DNA repair protein 1; recombination activator; 2.20A {Schizosaccharomyces pombe}
Probab=54.49 E-value=30 Score=20.18 Aligned_cols=21 Identities=33% Similarity=0.514 Sum_probs=16.7
Q ss_pred hhHhhHHHHHHHHHHHhHHHH
Q psy9706 2 RRRHTLEEELKDLREENKKLK 22 (39)
Q Consensus 2 r~r~~Lq~Ev~~LRe~N~RLq 22 (39)
.++..|+.+|+.|++..+.|+
T Consensus 7 ~~~~~L~~~i~~l~~~L~~lk 27 (122)
T 3viq_A 7 SRRLKLEKEVRNLQEQLITAE 27 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 357788888888888887776
No 71
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=51.82 E-value=12 Score=18.50 Aligned_cols=20 Identities=10% Similarity=0.180 Sum_probs=12.3
Q ss_pred hHHHHHHHHHHHhHHHHHHH
Q psy9706 6 TLEEELKDLREENKKLKEES 25 (39)
Q Consensus 6 ~Lq~Ev~~LRe~N~RLqeES 25 (39)
.|++-|..|=..|.-|+.|-
T Consensus 5 QledKvEel~~~~~~l~nEv 24 (34)
T 2r2v_A 5 QVADKLEEVASKLYHNANEL 24 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHH
Confidence 35666666666666666553
No 72
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=51.28 E-value=12 Score=22.29 Aligned_cols=22 Identities=32% Similarity=0.514 Sum_probs=17.7
Q ss_pred hhHHHHHHHHHHHhHHHHHHHH
Q psy9706 5 HTLEEELKDLREENKKLKEESQ 26 (39)
Q Consensus 5 ~~Lq~Ev~~LRe~N~RLqeESq 26 (39)
..|.+|+++|.=+|.-|+-...
T Consensus 11 EeLaaeL~kLqmENK~LKkkl~ 32 (110)
T 2oa5_A 11 EEMVKEVERLKLENKTLKQKVK 32 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3689999999999999986544
No 73
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=50.99 E-value=37 Score=22.54 Aligned_cols=29 Identities=24% Similarity=0.397 Sum_probs=15.5
Q ss_pred hhHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy9706 5 HTLEEELKDLREENKKLKEESQNALQQLR 33 (39)
Q Consensus 5 ~~Lq~Ev~~LRe~N~RLqeESqsA~~qLr 33 (39)
..|+.|++.|++....|+++...+-..++
T Consensus 6 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~ 34 (403)
T 4etp_A 6 AALKEKIAALKEKIAALKEKIKDTELGMK 34 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566665555555555555444443
No 74
>3kf9_B MLCK2, myosin light chain kinase 2, skeletal/cardiac MUS; centrin, cell cycle, cell divisio mitosis, calmodulin-binding; 2.60A {Scherffelia dubia}
Probab=50.48 E-value=9.7 Score=17.29 Aligned_cols=11 Identities=9% Similarity=0.386 Sum_probs=9.3
Q ss_pred HHHHHHHHHhh
Q psy9706 26 QNALQQLRRFT 36 (39)
Q Consensus 26 qsA~~qLrkft 36 (39)
-+|+..|+||+
T Consensus 11 v~Aanrl~k~~ 21 (22)
T 3kf9_B 11 VSAANRFKKIS 21 (26)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHhhcC
Confidence 47899999997
No 75
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=50.07 E-value=30 Score=18.91 Aligned_cols=31 Identities=23% Similarity=0.358 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHhhh
Q psy9706 7 LEEELKDLREENKKLKEESQNALQQLRRFTE 37 (39)
Q Consensus 7 Lq~Ev~~LRe~N~RLqeESqsA~~qLrkfte 37 (39)
|+..|+.|.++-.-=+.+....-..|++|.+
T Consensus 19 Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e 49 (72)
T 3cve_A 19 LEGQLSEMEQRLEKSQSEQDAFRSNLKTLLE 49 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444433333333333333344555544
No 76
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=49.39 E-value=34 Score=22.96 Aligned_cols=29 Identities=21% Similarity=0.247 Sum_probs=19.5
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy9706 6 TLEEELKDLREENKKLKEESQNALQQLRR 34 (39)
Q Consensus 6 ~Lq~Ev~~LRe~N~RLqeESqsA~~qLrk 34 (39)
.|+.++..|.+.++++++|.....+||.+
T Consensus 14 ~~~~~~~~l~~~~~~~~~~~~~~~~~l~~ 42 (412)
T 3u06_A 14 HLRQRTEELLRCNEQQAAELETCKEQLFQ 42 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666667777777777777777776654
No 77
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=49.25 E-value=30 Score=22.21 Aligned_cols=29 Identities=14% Similarity=0.366 Sum_probs=22.0
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy9706 6 TLEEELKDLREENKKLKEESQNALQQLRR 34 (39)
Q Consensus 6 ~Lq~Ev~~LRe~N~RLqeESqsA~~qLrk 34 (39)
.+.++...|.++-++.++|++|..++|-.
T Consensus 175 ~lK~kl~~l~~~L~~~~~e~~s~~~~~~~ 203 (228)
T 3q0x_A 175 EVKGTCHDLSDDLSRTRDDRDSMVAQLAQ 203 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777888888888888888777644
No 78
>1tu3_F RAB GTPase binding effector protein 1; rabaptin5, effector-binding, protein transport; HET: GNP; 2.31A {Homo sapiens} SCOP: h.1.27.2
Probab=47.59 E-value=18 Score=20.60 Aligned_cols=35 Identities=20% Similarity=0.296 Sum_probs=13.9
Q ss_pred hhHhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHhh
Q psy9706 2 RRRHTLEEELKDLREENKKLKEESQNALQQLRRFT 36 (39)
Q Consensus 2 r~r~~Lq~Ev~~LRe~N~RLqeESqsA~~qLrkft 36 (39)
..|+.|+..+..++..-++||.|..+.-+==|-|.
T Consensus 5 ~~k~~Le~~~~e~k~kv~~LQ~eLdtsE~VQrDFV 39 (79)
T 1tu3_F 5 SAKATVEQLMFEEKNKAQRLQTELDVSEQVQRDFV 39 (79)
T ss_dssp ----------------CHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46889999999999999999999877655555554
No 79
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=47.12 E-value=46 Score=20.16 Aligned_cols=25 Identities=20% Similarity=0.364 Sum_probs=15.2
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHH
Q psy9706 8 EEELKDLREENKKLKEESQNALQQL 32 (39)
Q Consensus 8 q~Ev~~LRe~N~RLqeESqsA~~qL 32 (39)
+..|+.|..++..|..+.+.|++.+
T Consensus 70 q~~vqeLqgEI~~Lnq~Lq~a~ae~ 94 (121)
T 3mq7_A 70 QKKVEELEGEITTLNHKLQDASAEV 94 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446667777666666666655443
No 80
>3sjd_D Golgi to ER traffic protein 2; ATPase, receptor complex, TA-protein biogenesis, GET pathway hydrolase-transport protein complex; HET: ADP; 4.60A {Saccharomyces cerevisiae}
Probab=46.21 E-value=31 Score=17.94 Aligned_cols=29 Identities=31% Similarity=0.470 Sum_probs=17.9
Q ss_pred HHHHHHHHHhHHHHHHHHH-HHHHHHHhhhc
Q psy9706 9 EELKDLREENKKLKEESQN-ALQQLRRFTEW 38 (39)
Q Consensus 9 ~Ev~~LRe~N~RLqeESqs-A~~qLrkftew 38 (39)
+|-++||.+- |.+.=+.. |+..|-+.|-|
T Consensus 17 ~EkaRLrRER-R~aKi~~G~assRLNkItg~ 46 (46)
T 3sjd_D 17 AEKRRLLRER-RQKKFSNGGASSRLNKITGW 46 (46)
T ss_dssp HHHHHHHHHH-HHHHHHHHTHHHHHHHHC--
T ss_pred HHHHHHHHHH-HHHHHHccchHHHHHHHhcC
Confidence 4566666654 33444455 99999999887
No 81
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=46.14 E-value=32 Score=18.08 Aligned_cols=33 Identities=24% Similarity=0.313 Sum_probs=24.5
Q ss_pred HhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHhh
Q psy9706 4 RHTLEEELKDLREENKKLKEESQNALQQLRRFT 36 (39)
Q Consensus 4 r~~Lq~Ev~~LRe~N~RLqeESqsA~~qLrkft 36 (39)
...++.||..|..-++-|.++...+-.+|...+
T Consensus 36 ~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~ 68 (81)
T 1ic2_A 36 SKQLEDELVALQKKLKGTEDELDKYSESLKDAQ 68 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346778888888888888888877777765543
No 82
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=45.87 E-value=50 Score=20.65 Aligned_cols=27 Identities=15% Similarity=0.331 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy9706 7 LEEELKDLREENKKLKEESQNALQQLR 33 (39)
Q Consensus 7 Lq~Ev~~LRe~N~RLqeESqsA~~qLr 33 (39)
+-..+..|...|.+|++|-+.-....-
T Consensus 150 ~ld~~~~L~~~n~~LqkeNeRL~~E~n 176 (184)
T 3w03_C 150 CLDTIAENQAKNEHLQKENERLLRDWN 176 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456789999999999999877555443
No 83
>3bs5_B Connector enhancer of kinase suppressor of RAS 2; sterIle alpha motif, SAM domain, SAM domain dimer, SAM domain complex, cytoplasm, membrane; 2.00A {Homo sapiens}
Probab=44.20 E-value=13 Score=18.90 Aligned_cols=22 Identities=23% Similarity=0.175 Sum_probs=15.6
Q ss_pred hHhhHHHHHHHHHHHhHHHHHH
Q psy9706 3 RRHTLEEELKDLREENKKLKEE 24 (39)
Q Consensus 3 ~r~~Lq~Ev~~LRe~N~RLqeE 24 (39)
+|..+...|+.||..|..|.-|
T Consensus 58 hr~~il~~I~~L~~~~~~l~~e 79 (80)
T 3bs5_B 58 HQELILEAVDLLCALNYGLETE 79 (80)
T ss_dssp HHHHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHhhhccccC
Confidence 5677888899999888777655
No 84
>2l48_A N-acetylmuramoyl-L-alanine amidase; bacillus anthracis gamma- phage endolysin, PLYG, cell WALL B domain, homodimer, ACT-type domain; NMR {Bacillus phage gamma}
Probab=44.07 E-value=6.4 Score=22.52 Aligned_cols=11 Identities=27% Similarity=0.386 Sum_probs=9.1
Q ss_pred HHHHHHhhhcC
Q psy9706 29 LQQLRRFTEWT 39 (39)
Q Consensus 29 ~~qLrkftew~ 39 (39)
-.||.+||+||
T Consensus 65 ~~eLdk~t~wL 75 (85)
T 2l48_A 65 DAQLKAMKEYL 75 (85)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 36899999995
No 85
>3v1a_A Computational design, MID1-APO1; helix-turn-helix, metal binding, homodimer, de novo protein, binding protein; 0.98A {Artificial gene} PDB: 3v1b_A* 3v1c_A* 3v1d_A* 3v1f_A* 3v1e_A
Probab=42.53 E-value=32 Score=17.69 Aligned_cols=19 Identities=26% Similarity=0.399 Sum_probs=16.3
Q ss_pred HHHHHHHHHhHHHHHHHHH
Q psy9706 9 EELKDLREENKKLKEESQN 27 (39)
Q Consensus 9 ~Ev~~LRe~N~RLqeESqs 27 (39)
+||..|..|-..|+.|-..
T Consensus 27 dEV~~L~~NL~EL~~E~~~ 45 (48)
T 3v1a_A 27 DEVRTLQENLHQLMHEYFQ 45 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 6999999999999988653
No 86
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=42.07 E-value=44 Score=18.49 Aligned_cols=31 Identities=19% Similarity=0.361 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHhhh
Q psy9706 7 LEEELKDLREENKKLKEESQNALQQLRRFTE 37 (39)
Q Consensus 7 Lq~Ev~~LRe~N~RLqeESqsA~~qLrkfte 37 (39)
|+..|+.|.++-.-=+.+...+-..|++|.+
T Consensus 25 Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e 55 (79)
T 3cvf_A 25 LEHQLRAMERSLEEARAERERARAEVGRAAQ 55 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444443333333344445555544
No 87
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=41.55 E-value=60 Score=20.33 Aligned_cols=28 Identities=36% Similarity=0.381 Sum_probs=20.5
Q ss_pred hhHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy9706 5 HTLEEELKDLREENKKLKEESQNALQQL 32 (39)
Q Consensus 5 ~~Lq~Ev~~LRe~N~RLqeESqsA~~qL 32 (39)
..||.++.+|.+++...+++.....+.|
T Consensus 138 ~kLqkeiD~LEDeL~~eKek~k~i~~eL 165 (175)
T 3mud_A 138 AKNEKSIDDLEEKVAHAKEENLNMHQML 165 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888888887777777776666655
No 88
>3h43_A Proteasome-activating nucleotidase; regulatory particle, nucleosidase, ATP-binding, cytoplasm, nucleotide-binding, hydrolase; 2.10A {Methanocaldococcus jannaschii}
Probab=39.63 E-value=21 Score=19.29 Aligned_cols=15 Identities=27% Similarity=0.350 Sum_probs=10.7
Q ss_pred HHHHHHHHHhHHHHH
Q psy9706 9 EELKDLREENKKLKE 23 (39)
Q Consensus 9 ~Ev~~LRe~N~RLqe 23 (39)
.|++.|++++.+|+.
T Consensus 2 ~ev~~lkeei~~L~~ 16 (85)
T 3h43_A 2 KENEILRRELDRMRV 16 (85)
T ss_dssp HHHHHHHHHHHHHHS
T ss_pred cHHHHHHHHHHHhcC
Confidence 367777888777763
No 89
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=39.30 E-value=77 Score=20.56 Aligned_cols=35 Identities=29% Similarity=0.371 Sum_probs=23.2
Q ss_pred hhHhhHHHHHHH-------------HHHHhHHHHHHHHHHHHHHHHhh
Q psy9706 2 RRRHTLEEELKD-------------LREENKKLKEESQNALQQLRRFT 36 (39)
Q Consensus 2 r~r~~Lq~Ev~~-------------LRe~N~RLqeESqsA~~qLrkft 36 (39)
++|..|..++.. |.++-.|..-|+..|-+||--|+
T Consensus 111 ~~R~~l~~~I~kLk~k~P~s~kl~~LeqELvraEae~lvaEAqL~n~k 158 (234)
T 3plt_A 111 DRKEKITDEIAHLKYKDPQSTKIPVLEQELVRAEAESLVAEAQLSNIT 158 (234)
T ss_dssp HHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHhhHHHHHHHHhH
Confidence 356667777764 45566666677777778886554
No 90
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=39.06 E-value=47 Score=18.02 Aligned_cols=33 Identities=21% Similarity=0.285 Sum_probs=25.0
Q ss_pred HhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHhh
Q psy9706 4 RHTLEEELKDLREENKKLKEESQNALQQLRRFT 36 (39)
Q Consensus 4 r~~Lq~Ev~~LRe~N~RLqeESqsA~~qLrkft 36 (39)
...++.||.+|...++-|+++...+..+|....
T Consensus 39 ~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~ 71 (101)
T 3u59_A 39 CKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQ 71 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345778899998888888888777777776543
No 91
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=34.30 E-value=83 Score=20.86 Aligned_cols=27 Identities=22% Similarity=0.273 Sum_probs=12.7
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy9706 6 TLEEELKDLREENKKLKEESQNALQQL 32 (39)
Q Consensus 6 ~Lq~Ev~~LRe~N~RLqeESqsA~~qL 32 (39)
.|+.++..|.+....++++-....++|
T Consensus 14 ~l~~~~~~l~~~~~~~~~~~~~~~~~~ 40 (403)
T 4etp_A 14 ALKEKIAALKEKIKDTELGMKELNEIL 40 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444
No 92
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=33.75 E-value=93 Score=19.87 Aligned_cols=30 Identities=13% Similarity=0.074 Sum_probs=20.3
Q ss_pred hhHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy9706 5 HTLEEELKDLREENKKLKEESQNALQQLRR 34 (39)
Q Consensus 5 ~~Lq~Ev~~LRe~N~RLqeESqsA~~qLrk 34 (39)
..+.+|.+..|++..++-++.+.-.++|++
T Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (487)
T 3oja_A 420 EEMYVEQQSVQNNAIRDWDMYQHKETQLAE 449 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcchhhhhhhhhHHHHHHH
Confidence 346677777777777777777766666654
No 93
>1z23_A CRK-associated substrate; four-helix bundle, cell adhesion; NMR {Rattus norvegicus}
Probab=33.26 E-value=49 Score=20.46 Aligned_cols=22 Identities=14% Similarity=0.211 Sum_probs=19.4
Q ss_pred HHHhHHHHHHHHHHHHHHHHhh
Q psy9706 15 REENKKLKEESQNALQQLRRFT 36 (39)
Q Consensus 15 Re~N~RLqeESqsA~~qLrkft 36 (39)
.|.-.|||.+..+++.+|-.|.
T Consensus 13 ~E~L~rLQ~~v~~sVs~Ll~fv 34 (163)
T 1z23_A 13 VETLARLQQGVSTTVAHLLDLV 34 (163)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4556899999999999999997
No 94
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=33.21 E-value=70 Score=18.29 Aligned_cols=28 Identities=21% Similarity=0.340 Sum_probs=18.2
Q ss_pred hhHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy9706 5 HTLEEELKDLREENKKLKEESQNALQQL 32 (39)
Q Consensus 5 ~~Lq~Ev~~LRe~N~RLqeESqsA~~qL 32 (39)
..|+.+++.|...|+-|+++......+.
T Consensus 53 ~eL~~~~~~Le~~n~~L~~~lke~~~~~ 80 (155)
T 2oto_A 53 EELEKAKQALEDQRKDLETKLKELQQDY 80 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566677777777777776665554433
No 95
>1yzm_A FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB GTPase, vesicular trafficking, protein transport; 1.50A {Homo sapiens} SCOP: a.2.19.1
Probab=32.91 E-value=41 Score=17.42 Aligned_cols=18 Identities=28% Similarity=0.608 Sum_probs=14.6
Q ss_pred HHHHHHHHHhHHHHHHHH
Q psy9706 9 EELKDLREENKKLKEESQ 26 (39)
Q Consensus 9 ~Ev~~LRe~N~RLqeESq 26 (39)
+||..|-.|-.-|++|-.
T Consensus 28 DEV~~Le~NLrEL~~ei~ 45 (51)
T 1yzm_A 28 DEVRTLQENLRQLQDEYD 45 (51)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 688888888888888754
No 96
>1a92_A Delta antigen; leucine zipper, coiled-coil, oligomerization; 1.80A {Hepatitis delta virus} SCOP: h.4.6.1 PDB: 1by0_A
Probab=31.02 E-value=62 Score=17.00 Aligned_cols=21 Identities=38% Similarity=0.639 Sum_probs=15.9
Q ss_pred HhhHHHHHHHHHHHhHHHHHH
Q psy9706 4 RHTLEEELKDLREENKKLKEE 24 (39)
Q Consensus 4 r~~Lq~Ev~~LRe~N~RLqeE 24 (39)
...|+.+++..+..+++|.+|
T Consensus 16 ~eeler~lrk~kk~iKklEde 36 (50)
T 1a92_A 16 LEELERDLRKLKKKIKKLEED 36 (50)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhcc
Confidence 345777788888888888876
No 97
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=30.86 E-value=53 Score=21.57 Aligned_cols=20 Identities=40% Similarity=0.511 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHhHHHHHHHH
Q psy9706 7 LEEELKDLREENKKLKEESQ 26 (39)
Q Consensus 7 Lq~Ev~~LRe~N~RLqeESq 26 (39)
|.++.+.+|++..+|++|..
T Consensus 73 L~~~Lk~ar~El~~LkeEle 92 (251)
T 3m9b_A 73 LMETLKEARQQLLALREEVD 92 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55666666666666666643
No 98
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=30.37 E-value=55 Score=18.41 Aligned_cols=22 Identities=27% Similarity=0.531 Sum_probs=13.5
Q ss_pred hHhhHHHHHHHHHHHhHHHHHH
Q psy9706 3 RRHTLEEELKDLREENKKLKEE 24 (39)
Q Consensus 3 ~r~~Lq~Ev~~LRe~N~RLqeE 24 (39)
.+.+|..|+.++++--.|+++-
T Consensus 45 E~e~l~~El~s~~~~~~r~~~r 66 (77)
T 2w83_C 45 EKDVLQGELEAVKQAKLKLEEK 66 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666666666666666543
No 99
>1z0k_B FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB gtpases, effector complex, vesicular trafficking, protein transport; HET: GTP MES; 1.92A {Homo sapiens} SCOP: a.2.19.1
Probab=30.28 E-value=45 Score=18.20 Aligned_cols=18 Identities=28% Similarity=0.608 Sum_probs=15.0
Q ss_pred HHHHHHHHHhHHHHHHHH
Q psy9706 9 EELKDLREENKKLKEESQ 26 (39)
Q Consensus 9 ~Ev~~LRe~N~RLqeESq 26 (39)
+||..|-.|.+.|++|-.
T Consensus 46 DEV~tLe~NLrEL~~ei~ 63 (69)
T 1z0k_B 46 DEVRTLQENLRQLQDEYD 63 (69)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 689999999998988754
No 100
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=29.91 E-value=1e+02 Score=19.12 Aligned_cols=27 Identities=30% Similarity=0.448 Sum_probs=14.1
Q ss_pred HhhHHHHHHHHHHHhHHHHHHHHHHHH
Q psy9706 4 RHTLEEELKDLREENKKLKEESQNALQ 30 (39)
Q Consensus 4 r~~Lq~Ev~~LRe~N~RLqeESqsA~~ 30 (39)
-..|+.|+.++++.-.++..+-....+
T Consensus 99 i~~L~~El~~~k~~~~k~~~e~r~L~E 125 (168)
T 3o0z_A 99 ITSLQEEVKHLKHNLEKVEGERKEAQD 125 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666654444444444333
No 101
>1io1_A Phase 1 flagellin; beta-folium, structural protein; 2.00A {Salmonella typhimurium} SCOP: e.32.1.1
Probab=28.82 E-value=46 Score=22.07 Aligned_cols=21 Identities=10% Similarity=0.216 Sum_probs=17.4
Q ss_pred hhHhhHHHHHHHHHHHhHHHH
Q psy9706 2 RRRHTLEEELKDLREENKKLK 22 (39)
Q Consensus 2 r~r~~Lq~Ev~~LRe~N~RLq 22 (39)
.+|..++.||..|+++..++-
T Consensus 54 ~dr~ai~~Ei~~l~~ei~~ia 74 (398)
T 1io1_A 54 SDLDSIQAEITQRLNEIDRVS 74 (398)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 368899999999999887754
No 102
>2kk9_A M protein, serotype 5; S. pyogenes, synthetic peptide vaccine, cell WAL peptidoglycan-anchor, phagocytosis, secreted, virulence, UN function; NMR {Synthetic}
Probab=27.57 E-value=62 Score=17.08 Aligned_cols=16 Identities=44% Similarity=0.659 Sum_probs=11.7
Q ss_pred HhhHHHHHHHHHHHhH
Q psy9706 4 RHTLEEELKDLREENK 19 (39)
Q Consensus 4 r~~Lq~Ev~~LRe~N~ 19 (39)
|..|++|.+.|-++||
T Consensus 14 Kk~lEAe~qKLeEekq 29 (56)
T 2kk9_A 14 KKQLEAEQQKLEEQNK 29 (56)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5567778777777776
No 103
>2nrj_A HBL B protein; enterotoxin, hemolysis, transmembrane, structural genomics, PSI-2, protein structure initiative; 2.03A {Bacillus cereus} SCOP: h.4.4.2
Probab=27.48 E-value=1.3e+02 Score=19.54 Aligned_cols=34 Identities=26% Similarity=0.430 Sum_probs=30.0
Q ss_pred hHhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHhh
Q psy9706 3 RRHTLEEELKDLREENKKLKEESQNALQQLRRFT 36 (39)
Q Consensus 3 ~r~~Lq~Ev~~LRe~N~RLqeESqsA~~qLrkft 36 (39)
.+..|..-+..|+.+-...|.+.+.++.-|..|-
T Consensus 117 d~~~l~~~L~~L~~~i~~~q~~~~~~~~~L~~F~ 150 (346)
T 2nrj_A 117 DGETLKEGITDLRGEIQQNQKYAQQLIEELTKLR 150 (346)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567778889999999999999999999999995
No 104
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=27.29 E-value=89 Score=17.59 Aligned_cols=32 Identities=19% Similarity=0.380 Sum_probs=22.4
Q ss_pred HhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q psy9706 4 RHTLEEELKDLREENKKLKEESQNALQQLRRF 35 (39)
Q Consensus 4 r~~Lq~Ev~~LRe~N~RLqeESqsA~~qLrkf 35 (39)
|..|++|+..-.++..+|+++....-..++.+
T Consensus 46 Kkkl~~el~~h~~ei~~le~~i~rhk~~i~~l 77 (84)
T 1gmj_A 46 KKHKENEISHHAKEIERLQKEIERHKQSIKKL 77 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45566777777788888888877666655543
No 105
>1wkc_A HB8 TT1367 protein; structural genomics, riken structural genomics/proteomi initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.124.1.6
Probab=26.90 E-value=99 Score=18.08 Aligned_cols=34 Identities=9% Similarity=-0.053 Sum_probs=22.3
Q ss_pred HhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhc
Q psy9706 4 RHTLEEELKDLREENKKLKEESQNALQQLRRFTEW 38 (39)
Q Consensus 4 r~~Lq~Ev~~LRe~N~RLqeESqsA~~qLrkftew 38 (39)
|..|-.++...|.....-+ .|+.++++|..+-+|
T Consensus 3 K~~lR~~~~~~r~~l~~~~-~s~~i~~~l~~~~~~ 36 (184)
T 1wkc_A 3 KAELRRRARAAWRRLDLKA-LSRAVGAALLPWLRE 36 (184)
T ss_dssp HHHHHHHHHHHHHTSCHHH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHH-HHHHHHHHHHhChhh
Confidence 6677777777776543322 577777887766544
No 106
>2ean_A Connector enhancer of kinase suppressor of RAS 2; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.82 E-value=44 Score=17.01 Aligned_cols=19 Identities=16% Similarity=0.048 Sum_probs=14.5
Q ss_pred hHhhHHHHHHHHHHHhHHH
Q psy9706 3 RRHTLEEELKDLREENKKL 21 (39)
Q Consensus 3 ~r~~Lq~Ev~~LRe~N~RL 21 (39)
+|..+...|+.||..|..|
T Consensus 62 hr~~il~~I~~L~~~~~~l 80 (83)
T 2ean_A 62 HQELILEAVDLLCALNSGP 80 (83)
T ss_dssp HHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHhhcc
Confidence 5777788888888877654
No 107
>3v47_C Flagellin; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Salmonella enterica subsp}
Probab=26.67 E-value=51 Score=22.85 Aligned_cols=21 Identities=14% Similarity=0.327 Sum_probs=17.2
Q ss_pred hhHhhHHHHHHHHHHHhHHHH
Q psy9706 2 RRRHTLEEELKDLREENKKLK 22 (39)
Q Consensus 2 r~r~~Lq~Ev~~LRe~N~RLq 22 (39)
.+|..++.||..|+++..++-
T Consensus 66 ~DR~aIq~Ei~qL~~eI~~Ia 86 (425)
T 3v47_C 66 SDLKSIQDEIQQRLEEIDRVS 86 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 368899999999998887764
No 108
>1z0j_B FYVE-finger-containing RAB5 effector protein RABE, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Homo sapiens} SCOP: a.2.19.1
Probab=26.47 E-value=59 Score=17.33 Aligned_cols=18 Identities=28% Similarity=0.386 Sum_probs=15.0
Q ss_pred HHHHHHHHHhHHHHHHHH
Q psy9706 9 EELKDLREENKKLKEESQ 26 (39)
Q Consensus 9 ~Ev~~LRe~N~RLqeESq 26 (39)
+||..|-.|.+-|++|-.
T Consensus 35 DEV~~Le~NLrEL~~ei~ 52 (59)
T 1z0j_B 35 DEVEVLTENLRELKHTLA 52 (59)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 689999999999988754
No 109
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=26.37 E-value=71 Score=16.15 Aligned_cols=21 Identities=19% Similarity=0.280 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHH
Q psy9706 7 LEEELKDLREENKKLKEESQN 27 (39)
Q Consensus 7 Lq~Ev~~LRe~N~RLqeESqs 27 (39)
...||..||..-++|+-|.++
T Consensus 54 ~k~Ei~elrr~iq~L~~el~s 74 (77)
T 3trt_A 54 AKQESTEYRRQVQSLTMEVDA 74 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 456788888888888877665
No 110
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=25.99 E-value=1.4e+02 Score=22.53 Aligned_cols=7 Identities=43% Similarity=0.781 Sum_probs=2.5
Q ss_pred HHHHHHH
Q psy9706 10 ELKDLRE 16 (39)
Q Consensus 10 Ev~~LRe 16 (39)
|+..|++
T Consensus 992 e~~~l~~ 998 (1080)
T 2dfs_A 992 EIAKLRK 998 (1080)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 111
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=25.54 E-value=86 Score=16.86 Aligned_cols=27 Identities=15% Similarity=0.400 Sum_probs=17.6
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy9706 6 TLEEELKDLREENKKLKEESQNALQQL 32 (39)
Q Consensus 6 ~Lq~Ev~~LRe~N~RLqeESqsA~~qL 32 (39)
.|..+|..+-.+|.||.-|..++..-+
T Consensus 4 eLr~qi~~l~~e~~~l~~e~dn~~~~~ 30 (86)
T 3swk_A 4 ELRRQVDQLTNDKARVEVERDNLAEDI 30 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 466677777777777776665554443
No 112
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=25.49 E-value=1.2e+02 Score=18.66 Aligned_cols=33 Identities=18% Similarity=0.171 Sum_probs=20.3
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHH---HHHhhhc
Q psy9706 6 TLEEELKDLREENKKLKEESQNALQQ---LRRFTEW 38 (39)
Q Consensus 6 ~Lq~Ev~~LRe~N~RLqeESqsA~~q---Lrkftew 38 (39)
.+..++..|.++...|+++...-..+ +.....|
T Consensus 103 ~l~~~~~~l~~~~~~L~~~~~~l~~~~~~l~~L~p~ 138 (357)
T 3rrk_A 103 PVASRAEVLGKERAALEEEIQTIELFGKAAEKLAAL 138 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhh
Confidence 45566677777777777666666555 5554444
No 113
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=25.45 E-value=1.4e+02 Score=22.47 Aligned_cols=20 Identities=40% Similarity=0.604 Sum_probs=12.1
Q ss_pred hhHHHHHHHHHHHhHHHHHH
Q psy9706 5 HTLEEELKDLREENKKLKEE 24 (39)
Q Consensus 5 ~~Lq~Ev~~LRe~N~RLqeE 24 (39)
..|+..|.+|.++|+.|+.+
T Consensus 1019 ~~L~~kv~~L~~e~~~L~qq 1038 (1080)
T 2dfs_A 1019 HETEQLVSELKEQNTLLKTE 1038 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 35566666666666666643
No 114
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=24.71 E-value=51 Score=18.62 Aligned_cols=12 Identities=25% Similarity=0.620 Sum_probs=5.4
Q ss_pred HHHHHHhHHHHH
Q psy9706 12 KDLREENKKLKE 23 (39)
Q Consensus 12 ~~LRe~N~RLqe 23 (39)
+.|++.+++|++
T Consensus 77 k~Lq~~~~~l~~ 88 (118)
T 4ati_A 77 RKLQREQQRAKD 88 (118)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344444444443
No 115
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=24.66 E-value=1.4e+02 Score=18.87 Aligned_cols=29 Identities=28% Similarity=0.330 Sum_probs=20.6
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy9706 6 TLEEELKDLREENKKLKEESQNALQQLRR 34 (39)
Q Consensus 6 ~Lq~Ev~~LRe~N~RLqeESqsA~~qLrk 34 (39)
.-|.|+..||-+|.-+|---+.|-.+|++
T Consensus 57 ~HQKEi~~Lrae~~~~QRn~~K~~~~Lkr 85 (167)
T 4gkw_A 57 AHQKEIGKLRAELGTAQRNLEKADQLLKR 85 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHh
Confidence 44778889998888777666666555554
No 116
>1wwv_A Connector enhancer of kinase suppressor of RAS 1; structural genomics, protein regulation, transcription; NMR {Homo sapiens} SCOP: a.60.1.2
Probab=24.61 E-value=15 Score=19.97 Aligned_cols=23 Identities=13% Similarity=0.289 Sum_probs=17.5
Q ss_pred hHhhHHHHHHHHHHHhHHHHHHH
Q psy9706 3 RRHTLEEELKDLREENKKLKEES 25 (39)
Q Consensus 3 ~r~~Lq~Ev~~LRe~N~RLqeES 25 (39)
||..+...|+.||..|..|.-|.
T Consensus 63 hr~~Il~~I~~L~~~~~~l~~e~ 85 (91)
T 1wwv_A 63 HQELILGGVEQLQALSSRLQTEN 85 (91)
T ss_dssp HHHHHHHHHHHHHHHHSCSSTTT
T ss_pred HHHHHHHHHHHHHHHhhccchhc
Confidence 67788888999998887665543
No 117
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=24.18 E-value=69 Score=15.27 Aligned_cols=17 Identities=47% Similarity=0.755 Sum_probs=9.3
Q ss_pred hHHHHHHHHHHHhHHHH
Q psy9706 6 TLEEELKDLREENKKLK 22 (39)
Q Consensus 6 ~Lq~Ev~~LRe~N~RLq 22 (39)
.|+.+|+.|......|+
T Consensus 48 ~L~~ri~~Le~~l~~l~ 64 (70)
T 1zme_C 48 QLQKDLNDKTEENNRLK 64 (70)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45556666655555544
No 118
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=23.88 E-value=1.5e+02 Score=18.93 Aligned_cols=17 Identities=18% Similarity=0.266 Sum_probs=8.7
Q ss_pred hHHHHHHHHHHHHHHHH
Q psy9706 18 NKKLKEESQNALQQLRR 34 (39)
Q Consensus 18 N~RLqeESqsA~~qLrk 34 (39)
+..|+++.+++-++.+.
T Consensus 43 i~~L~~ql~sl~~~~~~ 59 (190)
T 4emc_A 43 IKQLQKQIDSLNAQVKE 59 (190)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhh
Confidence 44455555555555543
No 119
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=23.70 E-value=49 Score=16.04 Aligned_cols=17 Identities=24% Similarity=0.450 Sum_probs=9.0
Q ss_pred hhHHHHHHHHHHHhHHH
Q psy9706 5 HTLEEELKDLREENKKL 21 (39)
Q Consensus 5 ~~Lq~Ev~~LRe~N~RL 21 (39)
..|+.+|..|......|
T Consensus 52 ~~Le~ri~~Le~~l~~l 68 (72)
T 2er8_A 52 EAIEKRFKELTRTLTNL 68 (72)
T ss_dssp HHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34566666665544443
No 120
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} PDB: 3j1t_A 3j1u_A
Probab=23.69 E-value=1.6e+02 Score=20.42 Aligned_cols=32 Identities=22% Similarity=0.420 Sum_probs=27.5
Q ss_pred hhHHHHHHHHHHHhHHHHHHHHHHHHHHHHhh
Q psy9706 5 HTLEEELKDLREENKKLKEESQNALQQLRRFT 36 (39)
Q Consensus 5 ~~Lq~Ev~~LRe~N~RLqeESqsA~~qLrkft 36 (39)
..+.++|+.|+++...|+++...+-++|....
T Consensus 176 ~~l~~eV~pLk~eLk~lE~eL~e~e~eL~~ll 207 (536)
T 3err_A 176 ADMLKRVEPLRNELQKLEDDAKDNQQKLEALL 207 (536)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 45788999999999999999999999987653
No 121
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=23.35 E-value=69 Score=14.94 Aligned_cols=20 Identities=35% Similarity=0.617 Sum_probs=12.8
Q ss_pred hHHHHHHHHHHHhHHHHHHH
Q psy9706 6 TLEEELKDLREENKKLKEES 25 (39)
Q Consensus 6 ~Lq~Ev~~LRe~N~RLqeES 25 (39)
.|..||-.|.-+-+-|++|.
T Consensus 4 qlkdevgelkgevralkdev 23 (27)
T 3v86_A 4 QLKDEVGELKGEVRALKDEV 23 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHhHHHHHHHHH
Confidence 35666767766666666664
No 122
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=23.17 E-value=31 Score=20.45 Aligned_cols=18 Identities=28% Similarity=0.366 Sum_probs=7.7
Q ss_pred hhHHHHHHHHHHHhHHHH
Q psy9706 5 HTLEEELKDLREENKKLK 22 (39)
Q Consensus 5 ~~Lq~Ev~~LRe~N~RLq 22 (39)
..+..|...|-+.+..||
T Consensus 86 Ekl~~eKe~L~~ql~~Lq 103 (110)
T 2v4h_A 86 EKLVEKKEYLQEQLEQLQ 103 (110)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHH
Confidence 334444444444444443
No 123
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=21.67 E-value=1.6e+02 Score=18.50 Aligned_cols=22 Identities=23% Similarity=0.395 Sum_probs=11.8
Q ss_pred hHHHHHHHHHHHhHHHHHHHHH
Q psy9706 6 TLEEELKDLREENKKLKEESQN 27 (39)
Q Consensus 6 ~Lq~Ev~~LRe~N~RLqeESqs 27 (39)
.|++++..|.+...|++.|..+
T Consensus 70 ~l~~e~~el~d~~lR~~AEfeN 91 (213)
T 4ani_A 70 ELEAKLSEMEHRYLRLYADFEN 91 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555555555565555443
No 124
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=21.63 E-value=1.3e+02 Score=17.43 Aligned_cols=16 Identities=31% Similarity=0.559 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHhHHHH
Q psy9706 7 LEEELKDLREENKKLK 22 (39)
Q Consensus 7 Lq~Ev~~LRe~N~RLq 22 (39)
||.|+..||..|..|+
T Consensus 40 Lq~El~~lr~~~~~l~ 55 (111)
T 2v66_B 40 LEDDLSQTRAIKEQLH 55 (111)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5555555555555544
No 125
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=21.15 E-value=1.3e+02 Score=17.42 Aligned_cols=17 Identities=18% Similarity=0.225 Sum_probs=6.7
Q ss_pred HHHHHHhHHHHHHHHHH
Q psy9706 12 KDLREENKKLKEESQNA 28 (39)
Q Consensus 12 ~~LRe~N~RLqeESqsA 28 (39)
.+|.+++..++.+..++
T Consensus 92 ~~lK~el~~~~~k~e~~ 108 (138)
T 3hnw_A 92 YDLKHELIAAQIKAESS 108 (138)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444333333
No 126
>2d8c_A Phosphatidylcholine:ceramide cholinephosphotransferase 1; cell-free protein synthesis, protein regulation, lipid metabolism, structural genomics; NMR {Mus musculus} SCOP: a.60.1.2
Probab=20.80 E-value=61 Score=17.74 Aligned_cols=17 Identities=18% Similarity=0.321 Sum_probs=13.2
Q ss_pred hHhhHHHHHHHHHHHhH
Q psy9706 3 RRHTLEEELKDLREENK 19 (39)
Q Consensus 3 ~r~~Lq~Ev~~LRe~N~ 19 (39)
+|..|..+|+.||..|.
T Consensus 69 ~rkkl~~~I~~L~~~~~ 85 (97)
T 2d8c_A 69 NGQRLLDMIETLKMEHH 85 (97)
T ss_dssp TTHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHhH
Confidence 56778888999987764
No 127
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=20.66 E-value=2e+02 Score=19.37 Aligned_cols=31 Identities=10% Similarity=0.244 Sum_probs=21.1
Q ss_pred hhHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q psy9706 5 HTLEEELKDLREENKKLKEESQNALQQLRRF 35 (39)
Q Consensus 5 ~~Lq~Ev~~LRe~N~RLqeESqsA~~qLrkf 35 (39)
..|.+|++.|+++...|.++....-++|...
T Consensus 72 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (455)
T 2dq0_A 72 DELLAKSREIVKRIGELENEVEELKKKIDYY 102 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777777777666666543
No 128
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=20.61 E-value=1.9e+02 Score=19.13 Aligned_cols=32 Identities=28% Similarity=0.342 Sum_probs=22.8
Q ss_pred HhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q psy9706 4 RHTLEEELKDLREENKKLKEESQNALQQLRRF 35 (39)
Q Consensus 4 r~~Lq~Ev~~LRe~N~RLqeESqsA~~qLrkf 35 (39)
...|.+|++.|+++...|.++.....++|...
T Consensus 66 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (421)
T 1ses_A 66 KEALIARGKALGEEAKRLEEALREKEARLEAL 97 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34577778888888888877777777766543
No 129
>3mqp_B Phorbol-12-myristate-13-acetate-induced protein 1; BCL-2 family, structural genomics, PSI-2, protein structure initiative; 2.24A {Homo sapiens} PDB: 2nla_B
Probab=20.38 E-value=45 Score=15.41 Aligned_cols=10 Identities=50% Similarity=0.800 Sum_probs=7.3
Q ss_pred HHHHHHHhhh
Q psy9706 28 ALQQLRRFTE 37 (39)
Q Consensus 28 A~~qLrkfte 37 (39)
-+.|||+|-+
T Consensus 7 ca~qlrr~gd 16 (25)
T 3mqp_B 7 CATQLRRFGD 16 (26)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhH
Confidence 4678998854
Done!