RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9706
(39 letters)
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell
shape regulation; 2.5A {Listeria monocytogenes}
Length = 255
Score = 29.3 bits (66), Expect = 0.019
Identities = 8/28 (28%), Positives = 13/28 (46%)
Query: 10 ELKDLREENKKLKEESQNALQQLRRFTE 37
+LK+ EN+ LKE + Q +
Sbjct: 20 DLKNTYTENQHLKERLEELAQLESEVAD 47
Score = 27.8 bits (62), Expect = 0.070
Identities = 5/31 (16%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Query: 4 RHTLEEELKDLREENKKLKEESQNALQQLRR 34
E + L+E ++L + + L++
Sbjct: 21 LKNTYTENQHLKERLEELAQLESE-VADLKK 50
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 26.5 bits (57), Expect = 0.22
Identities = 8/23 (34%), Positives = 14/23 (60%), Gaps = 2/23 (8%)
Query: 8 EEELKDLREENKKL-KEESQNAL 29
++ LK L + + KL ++S AL
Sbjct: 19 KQALKKL-QASLKLYADDSAPAL 40
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer,
nucleotide twinning, protein complex, protein transport;
HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1
c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D
2iyl_D* 2cnw_D* 2j7p_D*
Length = 304
Score = 25.2 bits (56), Expect = 0.51
Identities = 6/12 (50%), Positives = 9/12 (75%)
Query: 26 QNALQQLRRFTE 37
QN L+Q ++F E
Sbjct: 234 QNGLEQAKKFHE 245
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin
subfragment 2, heavy meromyosin, essential light chain,
motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP:
i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 25.2 bits (55), Expect = 0.54
Identities = 9/31 (29%), Positives = 17/31 (54%)
Query: 2 RRRHTLEEELKDLREENKKLKEESQNALQQL 32
R EE + L+ E KK++++ + +QL
Sbjct: 934 ARIEEEEERSQQLQAEKKKMQQQMLDLEEQL 964
Score = 23.3 bits (50), Expect = 2.8
Identities = 9/34 (26%), Positives = 16/34 (47%)
Query: 1 MRRRHTLEEELKDLREENKKLKEESQNALQQLRR 34
+ + LE E DL E+ +L+ + QL +
Sbjct: 1059 EKIKRKLEGESSDLHEQIAELQAQIAELKAQLAK 1092
Score = 22.1 bits (47), Expect = 6.8
Identities = 8/31 (25%), Positives = 14/31 (45%)
Query: 7 LEEELKDLREENKKLKEESQNALQQLRRFTE 37
+E++ L +E K L+E + L E
Sbjct: 995 MEDQNNKLTKERKLLEERVSDLTTNLAEEEE 1025
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A
{Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20
c.37.1.20
Length = 854
Score = 24.8 bits (55), Expect = 0.70
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 3 RRHTLEEELKDLREENKKLKEESQN 27
R +E E+ L EE KL+ E +
Sbjct: 431 RLKAIEAEIAKLTEEIAKLRAEWER 455
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS
protein structure initiative, PSI, joint center for
structu genomics; HET: CIT; 1.60A {Thermotoga maritima}
SCOP: a.24.13.1 c.37.1.10
Length = 306
Score = 24.4 bits (54), Expect = 0.80
Identities = 6/12 (50%), Positives = 7/12 (58%)
Query: 26 QNALQQLRRFTE 37
QN L Q + F E
Sbjct: 236 QNGLVQAKIFKE 247
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein
translocation, GTP-binding, nucleotide-binding, protein
transport; 1.75A {Arabidopsis thaliana}
Length = 302
Score = 24.4 bits (54), Expect = 0.84
Identities = 6/12 (50%), Positives = 6/12 (50%)
Query: 26 QNALQQLRRFTE 37
N L Q R F E
Sbjct: 233 LNMLPQAREFNE 244
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein
transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Length = 320
Score = 24.1 bits (53), Expect = 1.1
Identities = 4/14 (28%), Positives = 7/14 (50%)
Query: 26 QNALQQLRRFTEWT 39
QN + Q F++
Sbjct: 241 QNGVIQAEEFSKVA 254
>2og2_A Putative signal recognition particle receptor; nucleotide-binding,
protein transport; 2.00A {Arabidopsis thaliana}
Length = 359
Score = 24.2 bits (53), Expect = 1.2
Identities = 6/12 (50%), Positives = 6/12 (50%)
Query: 26 QNALQQLRRFTE 37
N L Q R F E
Sbjct: 290 LNMLPQAREFNE 301
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 24.3 bits (53), Expect = 1.2
Identities = 8/33 (24%), Positives = 19/33 (57%)
Query: 2 RRRHTLEEELKDLREENKKLKEESQNALQQLRR 34
+ +H E+ + +L+E+N LK E + +++
Sbjct: 1016 KYKHETEQLVSELKEQNTLLKTEKEELNRRIHD 1048
Score = 23.9 bits (52), Expect = 1.4
Identities = 8/32 (25%), Positives = 14/32 (43%)
Query: 2 RRRHTLEEELKDLREENKKLKEESQNALQQLR 33
R+ +E K L E+ L+ ++LR
Sbjct: 935 RKIDEQNKEYKSLLEKMNNLEITYSTETEKLR 966
Score = 22.8 bits (49), Expect = 4.0
Identities = 7/28 (25%), Positives = 14/28 (50%)
Query: 7 LEEELKDLREENKKLKEESQNALQQLRR 34
+ E K + E K K E++ + +L+
Sbjct: 1003 TQTEKKTIEEWADKYKHETEQLVSELKE 1030
Score = 22.8 bits (49), Expect = 4.4
Identities = 8/35 (22%), Positives = 18/35 (51%)
Query: 3 RRHTLEEELKDLREENKKLKEESQNALQQLRRFTE 37
R +L+EE+ LR+E + + E + + ++
Sbjct: 985 RVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKH 1019
Score = 22.0 bits (47), Expect = 8.2
Identities = 6/31 (19%), Positives = 13/31 (41%)
Query: 7 LEEELKDLREENKKLKEESQNALQQLRRFTE 37
L +EL + E K ++E + + +
Sbjct: 996 LRKELHQTQTEKKTIEEWADKYKHETEQLVS 1026
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain,
aminoacyl-tRNA synthetase, ATP-binding, cytoplasm,
ligase, nucleotide-binding; 3.20A {Archaeoglobus
fulgidus}
Length = 171
Score = 23.8 bits (52), Expect = 1.4
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 7 LEEELKDLREENKKLKEE 24
EE KD R+E ++LK
Sbjct: 37 FFEEWKDQRKEIERLKSV 54
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase,
protein-targeting, transport protein; HET: GDP; 1.97A
{Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Length = 328
Score = 23.8 bits (52), Expect = 1.6
Identities = 4/12 (33%), Positives = 7/12 (58%)
Query: 26 QNALQQLRRFTE 37
++Q R+F E
Sbjct: 255 NAIVEQARQFNE 266
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated
sodium-selective ION C membrane, metal transport; HET:
PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 3rw0_A*
Length = 285
Score = 23.5 bits (51), Expect = 2.0
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 2 RRRHTLEEELKDLREENKKLKEESQNALQ 30
+ E+ LREE +LKE + +L+
Sbjct: 256 SHEDNINNEIIKLREEIVELKELIKTSLK 284
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin,
overlap complex, coiled-coils, contractIle PROT; HET:
DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Length = 175
Score = 23.6 bits (50), Expect = 2.3
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 6 TLEEELKDLREENKKLKEESQNALQQLRRFTE 37
E+ + DL E+ KEE+ N Q L +
Sbjct: 139 KNEKSIDDLEEKVAHAKEENLNMHQMLDQTLL 170
>3k59_A POL II, DNA polymerase II; protein-DNA complex, DNA damage, DNA
repair, DNA-binding; HET: DNA DOC DCP; 1.92A
{Escherichia coli} PDB: 3k57_A* 3k58_A* 3k5l_A* 3k5m_A*
3k5n_A* 3k5o_A* 3maq_A* 1q8i_A*
Length = 786
Score = 23.2 bits (50), Expect = 3.0
Identities = 7/30 (23%), Positives = 13/30 (43%)
Query: 2 RRRHTLEEELKDLREENKKLKEESQNALQQ 31
R +H L E + ++ + K + L Q
Sbjct: 464 REKHCLPEIVTNIWHGRDEAKRQGNKPLSQ 493
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD
subdomain; structural genomics, oceanospirillum SP.
MED92; 2.10A {Neptuniibacter caesariensis}
Length = 154
Score = 22.9 bits (50), Expect = 3.5
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 10 ELKDLREENKKLKEESQNALQQLRRF 35
+L LREEN +L+EE++ +Q
Sbjct: 125 QLAFLREENLRLQEETEAKNKQEGHH 150
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell
cycle, transcription; 2.55A {Homo sapiens} SCOP:
e.63.1.2
Length = 106
Score = 22.9 bits (49), Expect = 3.6
Identities = 10/35 (28%), Positives = 17/35 (48%)
Query: 3 RRHTLEEELKDLREENKKLKEESQNALQQLRRFTE 37
R L ++L+ L+E ++L QLR +E
Sbjct: 7 RLEGLTQDLRQLQESEQQLDHLMNICTTQLRLLSE 41
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory
protein; receiver domain, 2-component signal
transduction; 1.7A {Sinorhizobium meliloti} SCOP:
c.23.1.1 PDB: 1l5z_A 1l5y_A
Length = 155
Score = 22.5 bits (49), Expect = 5.0
Identities = 7/33 (21%), Positives = 13/33 (39%), Gaps = 9/33 (27%)
Query: 10 ELKDLREENKKLKEESQN---------ALQQLR 33
E + L EN+ L+ ++ AL+
Sbjct: 120 EKRRLVMENRSLRRAAEAASEGLKLAAALEHHH 152
>3jte_A Response regulator receiver protein; structural genomics, nysgrc,
response regulator receiver domain, target 11226E,
PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Length = 143
Score = 22.1 bits (48), Expect = 5.4
Identities = 5/15 (33%), Positives = 9/15 (60%)
Query: 10 ELKDLREENKKLKEE 24
K L EN+++ +E
Sbjct: 122 NRKKLLMENERMTQE 136
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting,
simibi class GTPase, GTP-BIND membrane,
nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A
2xxa_B* 1fts_A
Length = 503
Score = 22.1 bits (47), Expect = 6.7
Identities = 6/12 (50%), Positives = 8/12 (66%)
Query: 26 QNALQQLRRFTE 37
QNA+ Q + F E
Sbjct: 425 QNAVSQAKLFHE 436
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB,
proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR
binding; 3.65A {Bacillus subtilis}
Length = 468
Score = 21.8 bits (47), Expect = 8.2
Identities = 5/26 (19%), Positives = 15/26 (57%)
Query: 9 EELKDLREENKKLKEESQNALQQLRR 34
E+ LR+ ++L+E+ ++ + +
Sbjct: 420 EKAASLRDTEQRLREQVEDTKKSWKE 445
>2ksd_A Aerobic respiration control sensor protein ARCB; methods
development, histidine kinase receptor, membrane domain,
two-helical hairpin; NMR {Escherichia coli}
Length = 115
Score = 21.8 bits (46), Expect = 9.0
Identities = 6/24 (25%), Positives = 16/24 (66%)
Query: 9 EELKDLREENKKLKEESQNALQQL 32
++L+++RE + L + ++ + QL
Sbjct: 92 QKLEEMRERDLSLNVQLKDNIAQL 115
>2wd5_A Structural maintenance of chromosomes protein 1A; DNA damage,
cell cycle, cell division; 2.70A {Mus musculus}
Length = 233
Score = 21.5 bits (46), Expect = 9.3
Identities = 5/26 (19%), Positives = 13/26 (50%)
Query: 9 EELKDLREENKKLKEESQNALQQLRR 34
EE++ + ++ +E ++QL
Sbjct: 1 EEVEMAKRRIDEINKELNQVMEQLGD 26
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics
consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A
{Homo sapiens}
Length = 197
Score = 21.8 bits (47), Expect = 9.5
Identities = 4/21 (19%), Positives = 14/21 (66%)
Query: 4 RHTLEEELKDLREENKKLKEE 24
+ T E L+ L+++++ ++ +
Sbjct: 142 QGTQTEALQQLQKDSEAIRSQ 162
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.312 0.125 0.341
Gapped
Lambda K H
0.267 0.0599 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 620,200
Number of extensions: 21493
Number of successful extensions: 380
Number of sequences better than 10.0: 1
Number of HSP's gapped: 373
Number of HSP's successfully gapped: 129
Length of query: 39
Length of database: 6,701,793
Length adjustment: 13
Effective length of query: 26
Effective length of database: 6,338,820
Effective search space: 164809320
Effective search space used: 164809320
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (23.7 bits)