RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy9706
         (39 letters)



>d1slqa_ f.47.1.1 (A:) VP4 membrane interaction domain {Rhesus
           rotavirus [TaxId: 10969]}
          Length = 270

 Score = 25.1 bits (55), Expect = 0.17
 Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 2/29 (6%)

Query: 4   RHTLEEELKDLREENKKLKEESQNALQQL 32
           R  LE +L +LREE   L +E   A+ QL
Sbjct: 239 RQDLERQLGELREEFNALSQEI--AMSQL 265


>d2azeb1 e.63.1.2 (B:201-301) Transcription factor E2F1 {Human
          (Homo sapiens) [TaxId: 9606]}
          Length = 101

 Score = 24.7 bits (54), Expect = 0.24
 Identities = 10/35 (28%), Positives = 17/35 (48%)

Query: 3  RRHTLEEELKDLREENKKLKEESQNALQQLRRFTE 37
          R   L ++L+ L+E  ++L         QLR  +E
Sbjct: 2  RLEGLTQDLRQLQESEQQLDHLMNICTTQLRLLSE 36


>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G
          protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}
          Length = 340

 Score = 24.7 bits (52), Expect = 0.35
 Identities = 9/27 (33%), Positives = 16/27 (59%)

Query: 10 ELKDLREENKKLKEESQNALQQLRRFT 36
          EL  LR+E ++LK + ++A +     T
Sbjct: 3  ELDQLRQEAEQLKNQIRDARKACADAT 29


>d1nria_ c.80.1.3 (A:) Hypothetical protein HI0754 {Haemophilus
           influenzae [TaxId: 727]}
          Length = 248

 Score = 23.9 bits (51), Expect = 0.47
 Identities = 7/31 (22%), Positives = 13/31 (41%)

Query: 2   RRRHTLEEELKDLREENKKLKEESQNALQQL 32
                 E  + D++  N+KLK  +   + Q 
Sbjct: 213 LLGKCYENLMVDVQASNEKLKARAVRIVMQA 243


>d2vcha1 c.87.1.10 (A:6-476) Hydroquinone glucosyltransferase {Thale
           cress (Arabidopsis thaliana) [TaxId: 3702]}
          Length = 471

 Score = 22.8 bits (47), Expect = 1.4
 Identities = 9/23 (39%), Positives = 14/23 (60%)

Query: 8   EEELKDLREENKKLKEESQNALQ 30
            EE K +R + K+LKE +   L+
Sbjct: 424 GEEGKGVRNKMKELKEAACRVLK 446


>d1u7la_ e.57.1.1 (A:) Vacuolar ATP synthase subunit C {Baker's
           yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 388

 Score = 22.1 bits (47), Expect = 2.3
 Identities = 8/30 (26%), Positives = 14/30 (46%)

Query: 8   EEELKDLREENKKLKEESQNALQQLRRFTE 37
           EE +  L++E+       Q+   QL R  +
Sbjct: 260 EELIDQLKKEHDSAASLEQSLRVQLVRLAK 289


>d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret
          disjunctional) {Fruit fly (Drosophila melanogaster)
          [TaxId: 7227]}
          Length = 368

 Score = 21.0 bits (43), Expect = 6.6
 Identities = 6/28 (21%), Positives = 14/28 (50%)

Query: 7  LEEELKDLREENKKLKEESQNALQQLRR 34
          L +  ++L   N++   E +   +QL +
Sbjct: 1  LRQRTEELLRCNEQQAAELETCKEQLFQ 28


>d1qkka_ c.23.1.1 (A:) Transcriptional regulatory protein DctD,
           receiver domain {Sinorhizobium meliloti [TaxId: 382]}
          Length = 140

 Score = 20.8 bits (43), Expect = 7.5
 Identities = 8/25 (32%), Positives = 15/25 (60%)

Query: 9   EELKDLREENKKLKEESQNALQQLR 33
           EE + L  EN+ L+  ++ A + L+
Sbjct: 116 EEKRRLVMENRSLRRAAEAASEGLK 140


>d1sdma_ c.37.1.9 (A:) Kinesin heavy chain-like protein {Potato
           (Solanum tuberosum) [TaxId: 4113]}
          Length = 364

 Score = 20.3 bits (41), Expect = 9.9
 Identities = 4/31 (12%), Positives = 12/31 (38%)

Query: 3   RRHTLEEELKDLREENKKLKEESQNALQQLR 33
            ++   +E+  L++     KE++        
Sbjct: 327 SKNVSSKEVARLKKLVSYWKEQAGRKGDDEE 357


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.312    0.125    0.341 

Gapped
Lambda     K      H
   0.267   0.0614    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 152,022
Number of extensions: 4619
Number of successful extensions: 84
Number of sequences better than 10.0: 1
Number of HSP's gapped: 82
Number of HSP's successfully gapped: 44
Length of query: 39
Length of database: 2,407,596
Length adjustment: 12
Effective length of query: 27
Effective length of database: 2,242,836
Effective search space: 60556572
Effective search space used: 60556572
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 47 (22.1 bits)